Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087120 | XP_013469646.1 | 93.333 | 315 | 21 | 0 | 45 | 359 | 1 | 315 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087120 | sp|Q6RVV4|TIC32_PEA | 78.481 | 316 | 67 | 1 | 45 | 359 | 1 | 316 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087120 | A0A072VNT5 | 93.333 | 315 | 21 | 0 | 45 | 359 | 1 | 315 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087120 | Msa0186240 | 0.807708 | 4.430040e-50 | -8.615850e-47 |
| Msa0087120 | Msa0242720 | 0.801003 | 1.105141e-48 | -8.615850e-47 |
| Msa0087120 | Msa0265650 | 0.808250 | 3.396063e-50 | -8.615850e-47 |
| Msa0087120 | Msa0303900 | 0.809614 | 1.734680e-50 | -8.615850e-47 |
| Msa0087120 | Msa0306790 | 0.951016 | 4.952479e-109 | -8.615850e-47 |
| Msa0087120 | Msa0333770 | 0.803791 | 2.944625e-49 | -8.615850e-47 |
| Msa0087120 | Msa0434300 | 0.803638 | 3.169204e-49 | -8.615850e-47 |
| Msa0087120 | Msa0481440 | 0.805711 | 1.170039e-49 | -8.615850e-47 |
| Msa0087120 | Msa0522140 | 0.804743 | 1.865686e-49 | -8.615850e-47 |
| Msa0087120 | Msa0522170 | 0.811017 | 8.638543e-51 | -8.615850e-47 |
| Msa0087120 | Msa0557250 | 0.824030 | 1.006633e-53 | -8.615850e-47 |
| Msa0087120 | Msa0565180 | 0.815224 | 1.031407e-51 | -8.615850e-47 |
| Msa0087120 | Msa0603310 | 0.801343 | 9.414560e-49 | -8.615850e-47 |
| Msa0087120 | Msa0615200 | 0.807403 | 5.142159e-50 | -8.615850e-47 |
| Msa0087120 | Msa0629160 | 0.800783 | 1.225746e-48 | -8.615850e-47 |
| Msa0087120 | Msa0652600 | 0.816053 | 6.740660e-52 | -8.615850e-47 |
| Msa0087120 | Msa0657340 | 0.827641 | 1.398761e-54 | -8.615850e-47 |
| Msa0087120 | Msa0701430 | 0.803003 | 4.288618e-49 | -8.615850e-47 |
| Msa0087120 | Msa0725580 | 0.810000 | 1.432640e-50 | -8.615850e-47 |
| Msa0087120 | Msa0772490 | 0.801535 | 8.601181e-49 | -8.615850e-47 |
| Msa0087120 | Msa0791110 | 0.949831 | 5.724150e-108 | -8.615850e-47 |
| Msa0087120 | Msa0873940 | 0.801171 | 1.021195e-48 | -8.615850e-47 |
| Msa0087120 | Msa0975960 | 0.800857 | 1.183583e-48 | -8.615850e-47 |
| Msa0087120 | Msa1001120 | 0.806137 | 9.518745e-50 | -8.615850e-47 |
| Msa0087120 | Msa1062060 | 0.812336 | 4.463763e-51 | -8.615850e-47 |
| Msa0087120 | Msa1080820 | 0.802165 | 6.385929e-49 | -8.615850e-47 |
| Msa0087120 | Msa1095590 | 0.805479 | 1.308519e-49 | -8.615850e-47 |
| Msa0087120 | Msa1118960 | 0.802557 | 5.301237e-49 | -8.615850e-47 |
| Msa0087120 | Msa1174280 | 0.835163 | 1.969147e-56 | -8.615850e-47 |
| Msa0087120 | Msa1202110 | 0.820262 | 7.527809e-53 | -8.615850e-47 |
| Msa0087120 | Msa1254870 | 0.818332 | 2.071961e-52 | -8.615850e-47 |
| Msa0087120 | Msa1320430 | 0.804549 | 2.047905e-49 | -8.615850e-47 |
| Msa0087120 | Msa1328430 | 0.817622 | 2.996589e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087120 | MtrunA17_Chr1g0202891 | 93.333 | 315 | 21 | 0 | 45 | 359 | 1 | 315 | 0.0 | 607 |
| Msa0087120 | MtrunA17_Chr1g0202931 | 91.746 | 315 | 26 | 0 | 45 | 359 | 1 | 315 | 0.0 | 596 |
| Msa0087120 | MtrunA17_Chr1g0202871 | 82.857 | 315 | 54 | 0 | 45 | 359 | 1 | 315 | 0.0 | 543 |
| Msa0087120 | MtrunA17_Chr1g0202861 | 77.607 | 326 | 68 | 1 | 34 | 359 | 36 | 356 | 0.0 | 528 |
| Msa0087120 | MtrunA17_Chr1g0202861 | 88.889 | 36 | 4 | 0 | 1 | 36 | 104 | 139 | 5.17e-12 | 66.2 |
| Msa0087120 | MtrunA17_Chr8g0386971 | 68.167 | 311 | 99 | 0 | 45 | 355 | 1 | 311 | 1.85e-158 | 447 |
| Msa0087120 | MtrunA17_Chr6g0470321 | 70.779 | 308 | 85 | 3 | 54 | 357 | 18 | 324 | 1.07e-153 | 435 |
| Msa0087120 | MtrunA17_Chr6g0470501 | 69.055 | 307 | 92 | 2 | 54 | 357 | 37 | 343 | 1.59e-153 | 435 |
| Msa0087120 | MtrunA17_Chr1g0182541 | 58.689 | 305 | 126 | 0 | 52 | 356 | 13 | 317 | 2.99e-127 | 368 |
| Msa0087120 | MtrunA17_Chr7g0262941 | 58.824 | 306 | 125 | 1 | 52 | 356 | 13 | 318 | 2.44e-125 | 363 |
| Msa0087120 | MtrunA17_Chr4g0058731 | 45.631 | 309 | 164 | 2 | 52 | 356 | 24 | 332 | 1.89e-83 | 257 |
| Msa0087120 | MtrunA17_Chr8g0388831 | 43.260 | 319 | 177 | 3 | 44 | 358 | 5 | 323 | 3.41e-81 | 251 |
| Msa0087120 | MtrunA17_Chr3g0117241 | 49.296 | 142 | 69 | 1 | 52 | 190 | 13 | 154 | 1.23e-38 | 135 |
| Msa0087120 | MtrunA17_Chr3g0117251 | 41.176 | 170 | 99 | 1 | 191 | 359 | 1 | 170 | 9.53e-37 | 131 |
| Msa0087120 | MtrunA17_Chr6g0481311 | 35.798 | 257 | 145 | 8 | 74 | 319 | 62 | 309 | 2.27e-27 | 111 |
| Msa0087120 | MtrunA17_Chr6g0466681 | 29.889 | 271 | 170 | 7 | 69 | 335 | 62 | 316 | 3.31e-25 | 104 |
| Msa0087120 | MtrunA17_Chr1g0202911 | 64.865 | 74 | 26 | 0 | 77 | 150 | 4 | 77 | 3.94e-25 | 97.4 |
| Msa0087120 | MtrunA17_Chr1g0202911 | 77.778 | 36 | 8 | 0 | 1 | 36 | 34 | 69 | 9.89e-11 | 57.8 |
| Msa0087120 | MtrunA17_Chr2g0317921 | 31.190 | 311 | 179 | 12 | 77 | 356 | 90 | 396 | 2.55e-23 | 100 |
| Msa0087120 | MtrunA17_Chr6g0469251 | 27.609 | 297 | 185 | 10 | 81 | 356 | 14 | 301 | 3.08e-14 | 72.8 |
| Msa0087120 | MtrunA17_Chr3g0079561 | 29.134 | 254 | 150 | 11 | 124 | 356 | 13 | 257 | 5.00e-12 | 65.5 |
| Msa0087120 | MtrunA17_Chr7g0247011 | 25.172 | 290 | 159 | 11 | 76 | 327 | 9 | 278 | 3.68e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087120 | AT4G23420.1 | 68.671 | 316 | 98 | 1 | 45 | 359 | 1 | 316 | 2.46e-161 | 454 |
| Msa0087120 | AT4G23420.2 | 68.671 | 316 | 98 | 1 | 45 | 359 | 1 | 316 | 2.46e-161 | 454 |
| Msa0087120 | AT4G23430.2 | 67.722 | 316 | 101 | 1 | 45 | 359 | 1 | 316 | 7.33e-161 | 453 |
| Msa0087120 | AT4G11410.1 | 67.619 | 315 | 102 | 0 | 45 | 359 | 1 | 315 | 1.01e-158 | 447 |
| Msa0087120 | AT4G23420.3 | 66.159 | 328 | 104 | 2 | 39 | 359 | 6 | 333 | 4.12e-158 | 447 |
| Msa0087120 | AT4G23430.1 | 67.089 | 316 | 101 | 2 | 45 | 359 | 1 | 314 | 2.67e-157 | 444 |
| Msa0087120 | AT4G23430.4 | 64.873 | 316 | 100 | 2 | 45 | 359 | 1 | 306 | 1.00e-150 | 427 |
| Msa0087120 | AT4G23430.3 | 64.241 | 316 | 100 | 3 | 45 | 359 | 1 | 304 | 1.84e-147 | 419 |
| Msa0087120 | AT4G23420.5 | 69.847 | 262 | 78 | 1 | 45 | 305 | 1 | 262 | 1.14e-133 | 382 |
| Msa0087120 | AT4G23420.4 | 74.684 | 237 | 60 | 0 | 45 | 281 | 1 | 237 | 1.90e-131 | 376 |
| Msa0087120 | AT2G37540.1 | 55.700 | 307 | 136 | 0 | 50 | 356 | 10 | 316 | 3.61e-124 | 360 |
| Msa0087120 | AT5G02540.1 | 58.632 | 307 | 127 | 0 | 50 | 356 | 10 | 316 | 7.28e-123 | 357 |
| Msa0087120 | AT4G11410.2 | 68.980 | 245 | 76 | 0 | 45 | 289 | 1 | 245 | 3.18e-122 | 353 |
| Msa0087120 | AT2G37540.2 | 58.650 | 237 | 98 | 0 | 50 | 286 | 10 | 246 | 3.43e-100 | 297 |
| Msa0087120 | AT4G24050.1 | 44.839 | 310 | 168 | 2 | 52 | 358 | 13 | 322 | 4.13e-85 | 261 |
| Msa0087120 | AT5G50130.1 | 46.945 | 311 | 161 | 3 | 52 | 358 | 13 | 323 | 2.99e-84 | 259 |
| Msa0087120 | AT5G50130.8 | 46.290 | 283 | 151 | 1 | 77 | 358 | 7 | 289 | 1.81e-77 | 241 |
| Msa0087120 | AT5G50130.7 | 46.479 | 284 | 150 | 2 | 77 | 358 | 7 | 290 | 4.06e-77 | 239 |
| Msa0087120 | AT1G64590.1 | 44.746 | 295 | 160 | 2 | 61 | 352 | 22 | 316 | 5.70e-73 | 230 |
| Msa0087120 | AT5G50130.2 | 45.196 | 281 | 149 | 4 | 52 | 327 | 13 | 293 | 1.92e-69 | 221 |
| Msa0087120 | AT5G50130.4 | 45.390 | 282 | 148 | 5 | 52 | 327 | 13 | 294 | 4.83e-69 | 219 |
| Msa0087120 | AT5G50130.9 | 48.980 | 245 | 122 | 2 | 52 | 293 | 13 | 257 | 7.04e-69 | 217 |
| Msa0087120 | AT4G24050.2 | 44.697 | 264 | 141 | 3 | 52 | 312 | 13 | 274 | 8.52e-69 | 217 |
| Msa0087120 | AT5G50130.3 | 49.187 | 246 | 121 | 3 | 52 | 293 | 13 | 258 | 1.76e-68 | 216 |
| Msa0087120 | AT5G50130.6 | 44.488 | 254 | 138 | 3 | 77 | 327 | 7 | 260 | 1.86e-62 | 201 |
| Msa0087120 | AT5G50130.5 | 44.706 | 255 | 137 | 4 | 77 | 327 | 7 | 261 | 5.37e-62 | 200 |
| Msa0087120 | AT4G27760.1 | 31.270 | 307 | 174 | 10 | 74 | 356 | 58 | 351 | 1.74e-29 | 117 |
| Msa0087120 | AT1G03630.2 | 33.866 | 313 | 169 | 13 | 76 | 356 | 90 | 396 | 1.75e-26 | 109 |
| Msa0087120 | AT1G03630.1 | 33.758 | 314 | 170 | 13 | 75 | 356 | 91 | 398 | 1.77e-26 | 109 |
| Msa0087120 | AT5G54190.1 | 30.547 | 311 | 181 | 12 | 77 | 356 | 96 | 402 | 2.01e-26 | 109 |
| Msa0087120 | AT5G53090.1 | 31.561 | 301 | 181 | 6 | 74 | 356 | 57 | 350 | 1.14e-25 | 106 |
| Msa0087120 | AT4G09750.1 | 29.137 | 278 | 155 | 8 | 73 | 335 | 43 | 293 | 7.01e-25 | 103 |
| Msa0087120 | AT5G53100.1 | 30.263 | 304 | 184 | 7 | 74 | 356 | 45 | 341 | 4.85e-24 | 102 |
| Msa0087120 | AT4G27440.2 | 31.325 | 332 | 189 | 14 | 60 | 356 | 71 | 398 | 6.66e-24 | 102 |
| Msa0087120 | AT4G27440.1 | 31.325 | 332 | 189 | 14 | 60 | 356 | 71 | 398 | 6.66e-24 | 102 |
| Msa0087120 | AT5G15940.3 | 28.803 | 309 | 190 | 11 | 71 | 358 | 58 | 357 | 9.48e-21 | 92.8 |
| Msa0087120 | AT5G15940.2 | 28.803 | 309 | 190 | 11 | 71 | 358 | 58 | 357 | 9.48e-21 | 92.8 |
| Msa0087120 | AT5G15940.1 | 28.803 | 309 | 190 | 11 | 71 | 358 | 57 | 356 | 9.66e-21 | 92.4 |
| Msa0087120 | AT5G04070.1 | 27.723 | 303 | 191 | 7 | 75 | 358 | 60 | 353 | 8.49e-19 | 87.0 |
| Msa0087120 | AT5G54190.2 | 28.070 | 285 | 171 | 11 | 102 | 356 | 1 | 281 | 1.75e-18 | 85.1 |
| Msa0087120 | AT5G15940.4 | 28.947 | 228 | 145 | 5 | 71 | 285 | 58 | 281 | 9.02e-16 | 77.8 |
| Msa0087120 | AT5G61830.1 | 23.448 | 290 | 170 | 8 | 75 | 329 | 38 | 310 | 3.00e-13 | 70.1 |
| Msa0087120 | AT5G61830.2 | 23.448 | 290 | 170 | 8 | 75 | 329 | 38 | 310 | 3.00e-13 | 70.1 |
Find 81 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCAAGAAAGGGGTTTC+TGG | 0.179687 | 1_2:+67926943 | Msa0087120:CDS |
| CCTTCCCTGTGATTCTCTTT+TGG | 0.235273 | 1_2:-67929517 | None:intergenic |
| ATGCAGTTCAATGTTGTCTT+TGG | 0.245720 | 1_2:-67928231 | None:intergenic |
| TTTCAGCATGAATTTGATTA+AGG | 0.259296 | 1_2:+67929569 | Msa0087120:CDS |
| GCGTGGTGTCCATGTGATTA+TGG | 0.305515 | 1_2:+67927428 | Msa0087120:CDS |
| CACCAATCTTTCCCGCCATA+TGG | 0.337645 | 1_2:+67928939 | Msa0087120:CDS |
| GATTTGGTTATTACCTTGAT+TGG | 0.339925 | 1_2:-67928581 | None:intergenic |
| CGCTAACTCCCTTCACTTGT+GGG | 0.342424 | 1_2:-67929467 | None:intergenic |
| TTGTCAAAACGGATTCCTTC+AGG | 0.344301 | 1_2:-67928549 | None:intergenic |
| TTGTATACAGTTACAGCAAA+TGG | 0.345777 | 1_2:+67928714 | Msa0087120:intron |
| ACAGGGAAGGGACGCTGATT+TGG | 0.349751 | 1_2:+67929530 | Msa0087120:CDS |
| CTGATTTGGCTAAGAAACTT+TGG | 0.364749 | 1_2:+67929544 | Msa0087120:CDS |
| AAAGGGGTTTCTGGATTCTC+AGG | 0.371144 | 1_2:+67926952 | Msa0087120:CDS |
| GATTATGGCTGTTAGAAATA+AGG | 0.377539 | 1_2:+67927443 | Msa0087120:CDS |
| GGAGTTAGATCTCAGTTCAT+TGG | 0.382633 | 1_2:+67927530 | Msa0087120:CDS |
| ACAGGTATAATAAAGGTGAT+TGG | 0.389434 | 1_2:+67929258 | Msa0087120:intron |
| ACCCATATGGCGGGAAAGAT+TGG | 0.391956 | 1_2:-67928941 | None:intergenic |
| GAGGCATCTTGCAAGTTCAT+TGG | 0.404865 | 1_2:-67928777 | None:intergenic |
| CAGGTATAATAAAGGTGATT+GGG | 0.427139 | 1_2:+67929259 | Msa0087120:intron |
| TACAGCAAATGGGGTGCATA+TGG | 0.428773 | 1_2:+67928725 | Msa0087120:CDS |
| GAATGGCCACATGATGATAA+TGG | 0.429571 | 1_2:-67926923 | None:intergenic |
| ACAGGAGCATCCAGTGGTAT+TGG | 0.435914 | 1_2:+67927378 | Msa0087120:intron |
| TGTATACAGTTACAGCAAAT+GGG | 0.440853 | 1_2:+67928715 | Msa0087120:intron |
| GGAGTTAGATCTCAGCTCAT+TGG | 0.445576 | 1_2:+67926677 | Msa0087120:CDS |
| CGCCATATGGGTGTACTTGA+CGG | 0.445799 | 1_2:+67928952 | Msa0087120:CDS |
| ACAAAATTAATGACCAATCA+AGG | 0.448930 | 1_2:+67928568 | Msa0087120:CDS |
| TTACATCTTGATCAGGATGA+TGG | 0.449048 | 1_2:+67928874 | Msa0087120:intron |
| TTATGCAACAGGTATAATAA+AGG | 0.452058 | 1_2:+67929251 | Msa0087120:intron |
| CCGCTAACTCCCTTCACTTG+TGG | 0.453882 | 1_2:-67929468 | None:intergenic |
| AAGACCAGTGGAATCAAATT+CGG | 0.464641 | 1_2:-67927574 | None:intergenic |
| ATGTGGCCATTCAGCAAGAA+AGG | 0.469855 | 1_2:+67926934 | Msa0087120:CDS |
| GAAACCCCTTTCTTGCTGAA+TGG | 0.470036 | 1_2:-67926940 | None:intergenic |
| TCTTACATCAAGATGTTCAA+TGG | 0.471739 | 1_2:-67927597 | None:intergenic |
| AGATTGGTGAGAATGATTCC+TGG | 0.477751 | 1_2:-67928925 | None:intergenic |
| TTCATTGGCATGTAAAATGT+TGG | 0.478897 | 1_2:-67928762 | None:intergenic |
| GGCCTCATTGCTATTGTCAC+TGG | 0.483291 | 1_2:+67927018 | Msa0087120:CDS |
| CTCTGCTAAAATTGATGTCA+TGG | 0.483780 | 1_2:+67927509 | Msa0087120:CDS |
| CTCTGCTAAACTTGATGCCA+TGG | 0.490137 | 1_2:+67926656 | Msa0087120:CDS |
| TTGTCTTTGGACAGCATGAA+AGG | 0.496194 | 1_2:-67928218 | None:intergenic |
| GCATCCGAATTTGATTCCAC+TGG | 0.499929 | 1_2:+67927570 | Msa0087120:CDS |
| TGTGGCCATTCAGCAAGAAA+GGG | 0.508330 | 1_2:+67926935 | Msa0087120:CDS |
| ACCAATCTTTCCCGCCATAT+GGG | 0.511754 | 1_2:+67928940 | Msa0087120:CDS |
| CAGCATGAATTTGATTAAGG+AGG | 0.517327 | 1_2:+67929572 | Msa0087120:CDS |
| TGTGGCCAAAAGAGAATCAC+AGG | 0.521249 | 1_2:+67929512 | Msa0087120:CDS |
| GCACATGAAAGTAAGAAAGA+AGG | 0.529008 | 1_2:+67928483 | Msa0087120:CDS |
| TACCGTCAAGTACACCCATA+TGG | 0.533410 | 1_2:-67928954 | None:intergenic |
| TTCAGGATATGCAAATATGT+AGG | 0.537061 | 1_2:-67928532 | None:intergenic |
| ATTGTGAATTCTCTTCATCC+AGG | 0.539076 | 1_2:+67928907 | Msa0087120:CDS |
| CCACAAGTGAAGGGAGTTAG+CGG | 0.540315 | 1_2:+67929468 | Msa0087120:CDS |
| AGCATTGCACCCACAAGTGA+AGG | 0.549189 | 1_2:+67929458 | Msa0087120:CDS |
| ACTGCTGAACAAGTTACTCA+TGG | 0.551436 | 1_2:+67926982 | Msa0087120:CDS |
| TGTCTTTGGACAGCATGAAA+GGG | 0.555783 | 1_2:-67928217 | None:intergenic |
| GTAATTGCAAGAAACAATGC+AGG | 0.558972 | 1_2:+67928182 | Msa0087120:intron |
| TACATCTTGATCAGGATGAT+GGG | 0.560641 | 1_2:+67928875 | Msa0087120:intron |
| GTCAAGTACACCCATATGGC+GGG | 0.577914 | 1_2:-67928950 | None:intergenic |
| AGTCTCAACTCCAATACCAC+TGG | 0.581087 | 1_2:-67927388 | None:intergenic |
| TGTCAAAGAAACAATACTCA+AGG | 0.582192 | 1_2:+67926626 | Msa0087120:CDS |
| TACATATTTGCATATCCTGA+AGG | 0.585299 | 1_2:+67928534 | Msa0087120:CDS |
| CAAAAGAGAATCACAGGGAA+GGG | 0.585563 | 1_2:+67929518 | Msa0087120:CDS |
| AAGGGGTTTCTGGATTCTCA+GGG | 0.585889 | 1_2:+67926953 | Msa0087120:CDS |
| ATGCGTGTTCTTGCTTTGCG+TGG | 0.595996 | 1_2:+67927411 | Msa0087120:CDS |
| CCAAAAGAGAATCACAGGGA+AGG | 0.615970 | 1_2:+67929517 | Msa0087120:CDS |
| TGAACTTGCAAGATGCCTCA+AGG | 0.616025 | 1_2:+67928781 | Msa0087120:CDS |
| GAGTTTCCATTATCATCATG+TGG | 0.618765 | 1_2:+67926917 | Msa0087120:CDS |
| TTCTAACAGCCATAATCACA+TGG | 0.621462 | 1_2:-67927437 | None:intergenic |
| GCATTGCACCCACAAGTGAA+GGG | 0.624705 | 1_2:+67929459 | Msa0087120:CDS |
| TCTTGATCAGGATGATGGGG+TGG | 0.624894 | 1_2:+67928879 | Msa0087120:intron |
| CAATGCTACATAGCATGTTG+TGG | 0.627328 | 1_2:-67929442 | None:intergenic |
| GTGGCCATTCAGCAAGAAAG+GGG | 0.627372 | 1_2:+67926936 | Msa0087120:CDS |
| GATGTTCAATGGAAGACCAG+TGG | 0.631573 | 1_2:-67927586 | None:intergenic |
| CGTCAAGTACACCCATATGG+CGG | 0.638805 | 1_2:-67928951 | None:intergenic |
| ACTCATGGAATTGATGCAAG+TGG | 0.647904 | 1_2:+67926997 | Msa0087120:CDS |
| TGAGCTGAGATCTAACTCCA+TGG | 0.649334 | 1_2:-67926673 | None:intergenic |
| ATGGCATCAAGTTTAGCAGA+GGG | 0.654356 | 1_2:-67926654 | None:intergenic |
| GTATACAGTTACAGCAAATG+GGG | 0.659776 | 1_2:+67928716 | Msa0087120:intron |
| ACATCTTGATCAGGATGATG+GGG | 0.677424 | 1_2:+67928876 | Msa0087120:intron |
| CATGGCATCAAGTTTAGCAG+AGG | 0.683203 | 1_2:-67926655 | None:intergenic |
| ATGGTAACAGGAGCATCCAG+TGG | 0.683391 | 1_2:+67927372 | Msa0087120:intron |
| ATATTTCCCACATACCTAGG+TGG | 0.684024 | 1_2:-67928265 | None:intergenic |
| GACCAGTGACAATAGCAATG+AGG | 0.700937 | 1_2:-67927020 | None:intergenic |
| GTGGCCAAAAGAGAATCACA+GGG | 0.763656 | 1_2:+67929513 | Msa0087120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAATAGTAAATAAA+AGG | - | chr1_2:67928071-67928090 | None:intergenic | 10.0% |
| !! | AAAACATAACTTAATTATAT+AGG | - | chr1_2:67928314-67928333 | None:intergenic | 10.0% |
| !!! | ATTTTATTTATGATTTACGT+TGG | - | chr1_2:67926798-67926817 | None:intergenic | 15.0% |
| !! | AAAAACTACTATTTAACAAA+GGG | - | chr1_2:67927100-67927119 | None:intergenic | 15.0% |
| !! | TAAAAACTACTATTTAACAA+AGG | - | chr1_2:67927101-67927120 | None:intergenic | 15.0% |
| !! | AAATTATTATATGGATATGA+TGG | + | chr1_2:67927348-67927367 | Msa0087120:intron | 15.0% |
| !! | GAAACTTTAAATTAAGTTAA+AGG | + | chr1_2:67928028-67928047 | Msa0087120:intron | 15.0% |
| !!! | TTTTATGTTGCAGAATTATT+TGG | + | chr1_2:67927116-67927135 | Msa0087120:intron | 20.0% |
| !! | AAAACTTTAGATTAAGTTAG+AGG | - | chr1_2:67927681-67927700 | None:intergenic | 20.0% |
| !! | TCATTGAACAATATATGATA+AGG | - | chr1_2:67927902-67927921 | None:intergenic | 20.0% |
| !! | TAACAACTTCAATAAAAATC+AGG | - | chr1_2:67928097-67928116 | None:intergenic | 20.0% |
| !!! | ACTTAATTATATAGGTTGAT+TGG | - | chr1_2:67928306-67928325 | None:intergenic | 20.0% |
| !! | TATCATTCATCTACATTTAT+AGG | + | chr1_2:67929121-67929140 | Msa0087120:intron | 20.0% |
| ! | TTACATAAAATTCTTGCAAC+TGG | + | chr1_2:67927318-67927337 | Msa0087120:intron | 25.0% |
| ! | GGCTACGATAAATTATTATA+TGG | + | chr1_2:67927339-67927358 | Msa0087120:intron | 25.0% |
| ! | ATTATATGGATATGATGGTA+TGG | + | chr1_2:67927353-67927372 | Msa0087120:intron | 25.0% |
| ! | GTTTACAGAAAAACTCTTTA+TGG | + | chr1_2:67927773-67927792 | Msa0087120:intron | 25.0% |
| ! | TTGAACGCTGTAAATATAAA+GGG | + | chr1_2:67927969-67927988 | Msa0087120:intron | 25.0% |
| ! | TTCTTTAAATGCTTAAACTG+TGG | + | chr1_2:67928364-67928383 | Msa0087120:intron | 25.0% |
| ! | TGTAAATTATGTAATTGTGC+AGG | + | chr1_2:67928414-67928433 | Msa0087120:intron | 25.0% |
| !! | GGTCATTAATTTTGTCAAAA+CGG | - | chr1_2:67928563-67928582 | None:intergenic | 25.0% |
| ! | ACAAAATTAATGACCAATCA+AGG | + | chr1_2:67928568-67928587 | Msa0087120:CDS | 25.0% |
| !!! | TTTGTTTTTGTGTGTAAAAC+TGG | + | chr1_2:67928818-67928837 | Msa0087120:intron | 25.0% |
| !! | TGTCATTACTACACATTTTA+TGG | - | chr1_2:67929193-67929212 | None:intergenic | 25.0% |
| !! | TTATGTTTGATTTATGCAAC+AGG | + | chr1_2:67929240-67929259 | Msa0087120:intron | 25.0% |
| ! | TTATGCAACAGGTATAATAA+AGG | + | chr1_2:67929251-67929270 | Msa0087120:intron | 25.0% |
| ! | AATCAGTTCAAATAAATGTG+AGG | + | chr1_2:67929318-67929337 | Msa0087120:intron | 25.0% |
| ! | AGGATCAGTTCAAATAAAAT+TGG | + | chr1_2:67929338-67929357 | Msa0087120:intron | 25.0% |
| !!! | GTATTTTTCAGACAATAATG+TGG | + | chr1_2:67929494-67929513 | Msa0087120:CDS | 25.0% |
| ! | TTTCAGCATGAATTTGATTA+AGG | + | chr1_2:67929569-67929588 | Msa0087120:CDS | 25.0% |
| TGTCAAAGAAACAATACTCA+AGG | + | chr1_2:67926626-67926645 | Msa0087120:CDS | 30.0% | |
| TATTTGAATGATGACATCAG+TGG | + | chr1_2:67926729-67926748 | Msa0087120:intron | 30.0% | |
| ATTTGAATGATGACATCAGT+GGG | + | chr1_2:67926730-67926749 | Msa0087120:intron | 30.0% | |
| ATTGACATTGTGAATTGTGA+CGG | + | chr1_2:67926888-67926907 | Msa0087120:intron | 30.0% | |
| GATTATGGCTGTTAGAAATA+AGG | + | chr1_2:67927443-67927462 | Msa0087120:CDS | 30.0% | |
| !! | ATGACATCAATTTTAGCAGA+GGG | - | chr1_2:67927510-67927529 | None:intergenic | 30.0% |
| TCTTACATCAAGATGTTCAA+TGG | - | chr1_2:67927600-67927619 | None:intergenic | 30.0% | |
| GAACATCTTGATGTAAGAAA+AGG | + | chr1_2:67927602-67927621 | Msa0087120:intron | 30.0% | |
| ! | CAGTTTTGCCTAAACAAAAA+TGG | - | chr1_2:67927648-67927667 | None:intergenic | 30.0% |
| GTTGAACGCTGTAAATATAA+AGG | + | chr1_2:67927968-67927987 | Msa0087120:intron | 30.0% | |
| TAAAAGGAAAATCTGCACAT+GGG | - | chr1_2:67928055-67928074 | None:intergenic | 30.0% | |
| ATAAAAGGAAAATCTGCACA+TGG | - | chr1_2:67928056-67928075 | None:intergenic | 30.0% | |
| CATGATCAAGAAAGATAAAC+TGG | - | chr1_2:67928155-67928174 | None:intergenic | 30.0% | |
| !!! | GGGAAATATGTTTGGTTTTA+AGG | + | chr1_2:67928279-67928298 | Msa0087120:intron | 30.0% |
| ! | TCTCTTGACAAATCTTTTGT+TGG | + | chr1_2:67928443-67928462 | Msa0087120:CDS | 30.0% |
| TTCAGGATATGCAAATATGT+AGG | - | chr1_2:67928535-67928554 | None:intergenic | 30.0% | |
| TACATATTTGCATATCCTGA+AGG | + | chr1_2:67928534-67928553 | Msa0087120:CDS | 30.0% | |
| ! | GATTTGGTTATTACCTTGAT+TGG | - | chr1_2:67928584-67928603 | None:intergenic | 30.0% |
| AGGTAATAACCAAATCCAAT+AGG | + | chr1_2:67928588-67928607 | Msa0087120:intron | 30.0% | |
| TTTGAACTTAGGTTACCTAT+TGG | - | chr1_2:67928606-67928625 | None:intergenic | 30.0% | |
| CTTAATTCTTCATGCAACTA+AGG | - | chr1_2:67928664-67928683 | None:intergenic | 30.0% | |
| ATGAAGAATTAAGAGTGGAA+AGG | + | chr1_2:67928671-67928690 | Msa0087120:intron | 30.0% | |
| !! | ATTTGCTGTAACTGTATACA+AGG | - | chr1_2:67928715-67928734 | None:intergenic | 30.0% |
| TTGTATACAGTTACAGCAAA+TGG | + | chr1_2:67928714-67928733 | Msa0087120:intron | 30.0% | |
| TGTATACAGTTACAGCAAAT+GGG | + | chr1_2:67928715-67928734 | Msa0087120:intron | 30.0% | |
| TTCATTGGCATGTAAAATGT+TGG | - | chr1_2:67928765-67928784 | None:intergenic | 30.0% | |
| ! | TTACTTGTTACATCTTGATC+AGG | + | chr1_2:67928867-67928886 | Msa0087120:intron | 30.0% |
| ! | ATTTAGAATGTCATGTCACA+GGG | - | chr1_2:67929035-67929054 | None:intergenic | 30.0% |
| CATTATCTACCAATGTTATG+TGG | + | chr1_2:67929068-67929087 | Msa0087120:intron | 30.0% | |
| ! | ATGACAGTATCTCAGTTTTA+TGG | + | chr1_2:67929207-67929226 | Msa0087120:intron | 30.0% |
| ACAGGTATAATAAAGGTGAT+TGG | + | chr1_2:67929258-67929277 | Msa0087120:intron | 30.0% | |
| CAGGTATAATAAAGGTGATT+GGG | + | chr1_2:67929259-67929278 | Msa0087120:intron | 30.0% | |
| ACTTTCTCCTATCTAAATGT+AGG | + | chr1_2:67929413-67929432 | Msa0087120:intron | 30.0% | |
| CTTTCTCCTATCTAAATGTA+GGG | + | chr1_2:67929414-67929433 | Msa0087120:intron | 30.0% | |
| TTTCTCCTATCTAAATGTAG+GGG | + | chr1_2:67929415-67929434 | Msa0087120:intron | 30.0% | |
| GAGTTTCCATTATCATCATG+TGG | + | chr1_2:67926917-67926936 | Msa0087120:CDS | 35.0% | |
| TTCTAACAGCCATAATCACA+TGG | - | chr1_2:67927440-67927459 | None:intergenic | 35.0% | |
| !! | CATGACATCAATTTTAGCAG+AGG | - | chr1_2:67927511-67927530 | None:intergenic | 35.0% |
| CTCTGCTAAAATTGATGTCA+TGG | + | chr1_2:67927509-67927528 | Msa0087120:CDS | 35.0% | |
| AAGACCAGTGGAATCAAATT+CGG | - | chr1_2:67927577-67927596 | None:intergenic | 35.0% | |
| TGTAAGAAAAGGAACTGACT+TGG | + | chr1_2:67927613-67927632 | Msa0087120:intron | 35.0% | |
| !! | TCCCAGAACCATTTTTGTTT+AGG | + | chr1_2:67927637-67927656 | Msa0087120:intron | 35.0% |
| GCCTAAACAAAAATGGTTCT+GGG | - | chr1_2:67927641-67927660 | None:intergenic | 35.0% | |
| TGCCTAAACAAAAATGGTTC+TGG | - | chr1_2:67927642-67927661 | None:intergenic | 35.0% | |
| ! | CTTTTGTGGTCAATTTCTGT+GGG | - | chr1_2:67927804-67927823 | None:intergenic | 35.0% |
| ! | TCTTTTGTGGTCAATTTCTG+TGG | - | chr1_2:67927805-67927824 | None:intergenic | 35.0% |
| ! | TCTCAGATTCGAATCTTTTG+TGG | - | chr1_2:67927818-67927837 | None:intergenic | 35.0% |
| TATAAAGGGCTAACTTGACA+CGG | + | chr1_2:67927983-67928002 | Msa0087120:intron | 35.0% | |
| GTAATTGCAAGAAACAATGC+AGG | + | chr1_2:67928182-67928201 | Msa0087120:intron | 35.0% | |
| ATGCAGTTCAATGTTGTCTT+TGG | - | chr1_2:67928234-67928253 | None:intergenic | 35.0% | |
| AACATATTTCCCACATACCT+AGG | - | chr1_2:67928271-67928290 | None:intergenic | 35.0% | |
| AGGTATGTGGGAAATATGTT+TGG | + | chr1_2:67928271-67928290 | Msa0087120:intron | 35.0% | |
| GCACATGAAAGTAAGAAAGA+AGG | + | chr1_2:67928483-67928502 | Msa0087120:CDS | 35.0% | |
| ! | TGCAAATATGTAGGCTTTTG+CGG | - | chr1_2:67928526-67928545 | None:intergenic | 35.0% |
| CTTAGGTTACCTATTGGATT+TGG | - | chr1_2:67928600-67928619 | None:intergenic | 35.0% | |
| TCTCGTCATGATTTGAACTT+AGG | - | chr1_2:67928617-67928636 | None:intergenic | 35.0% | |
| GTTGCATGAAGAATTAAGAG+TGG | + | chr1_2:67928666-67928685 | Msa0087120:intron | 35.0% | |
| AAGAATTAAGAGTGGAAAGG+TGG | + | chr1_2:67928674-67928693 | Msa0087120:intron | 35.0% | |
| CTGTAACTGTATACAAGGAA+GGG | - | chr1_2:67928710-67928729 | None:intergenic | 35.0% | |
| GTATACAGTTACAGCAAATG+GGG | + | chr1_2:67928716-67928735 | Msa0087120:intron | 35.0% | |
| TTACATCTTGATCAGGATGA+TGG | + | chr1_2:67928874-67928893 | Msa0087120:intron | 35.0% | |
| TACATCTTGATCAGGATGAT+GGG | + | chr1_2:67928875-67928894 | Msa0087120:intron | 35.0% | |
| ATTGTGAATTCTCTTCATCC+AGG | + | chr1_2:67928907-67928926 | Msa0087120:CDS | 35.0% | |
| ! | CATTTAGAATGTCATGTCAC+AGG | - | chr1_2:67929036-67929055 | None:intergenic | 35.0% |
| !!! | TAGGTGTTTTATTTGCACAC+TGG | + | chr1_2:67929140-67929159 | Msa0087120:intron | 35.0% |
| TGTGATGAAAAATGTTCAGC+AGG | + | chr1_2:67929287-67929306 | Msa0087120:CDS | 35.0% | |
| TTCTCCTATCTAAATGTAGG+GGG | + | chr1_2:67929416-67929435 | Msa0087120:intron | 35.0% | |
| !! | CTGATTTGGCTAAGAAACTT+TGG | + | chr1_2:67929544-67929563 | Msa0087120:CDS | 35.0% |
| CAGCATGAATTTGATTAAGG+AGG | + | chr1_2:67929572-67929591 | Msa0087120:CDS | 35.0% | |
| ATGGCATCAAGTTTAGCAGA+GGG | - | chr1_2:67926657-67926676 | None:intergenic | 40.0% | |
| AATGATGACATCAGTGGGAT+TGG | + | chr1_2:67926735-67926754 | Msa0087120:intron | 40.0% | |
| CAATAGTGCAGATCATGCTT+TGG | - | chr1_2:67926872-67926891 | None:intergenic | 40.0% | |
| GAATGGCCACATGATGATAA+TGG | - | chr1_2:67926926-67926945 | None:intergenic | 40.0% | |
| ACTGCTGAACAAGTTACTCA+TGG | + | chr1_2:67926982-67927001 | Msa0087120:CDS | 40.0% | |
| ACTCATGGAATTGATGCAAG+TGG | + | chr1_2:67926997-67927016 | Msa0087120:CDS | 40.0% | |
| CTGCTGAAATTTGCATAGTC+AGG | + | chr1_2:67927266-67927285 | Msa0087120:intron | 40.0% | |
| GGATATGATGGTATGGTAAC+AGG | + | chr1_2:67927360-67927379 | Msa0087120:intron | 40.0% | |
| GGAGTTAGATCTCAGTTCAT+TGG | + | chr1_2:67927530-67927549 | Msa0087120:CDS | 40.0% | |
| TGTTTAGGCAAAACTGCACT+AGG | + | chr1_2:67927652-67927671 | Msa0087120:intron | 40.0% | |
| ATAAAGGGCTAACTTGACAC+GGG | + | chr1_2:67927984-67928003 | Msa0087120:intron | 40.0% | |
| AACTGGAACACAGATACTCA+TGG | - | chr1_2:67928138-67928157 | None:intergenic | 40.0% | |
| TGTCTTTGGACAGCATGAAA+GGG | - | chr1_2:67928220-67928239 | None:intergenic | 40.0% | |
| TTGTCTTTGGACAGCATGAA+AGG | - | chr1_2:67928221-67928240 | None:intergenic | 40.0% | |
| ! | CATTTTGCAACAAACCACCT+AGG | + | chr1_2:67928251-67928270 | Msa0087120:CDS | 40.0% |
| AACAAACCACCTAGGTATGT+GGG | + | chr1_2:67928259-67928278 | Msa0087120:intron | 40.0% | |
| ATATTTCCCACATACCTAGG+TGG | - | chr1_2:67928268-67928287 | None:intergenic | 40.0% | |
| ! | TTGTCAAAACGGATTCCTTC+AGG | - | chr1_2:67928552-67928571 | None:intergenic | 40.0% |
| GCTGTAACTGTATACAAGGA+AGG | - | chr1_2:67928711-67928730 | None:intergenic | 40.0% | |
| ACATCTTGATCAGGATGATG+GGG | + | chr1_2:67928876-67928895 | Msa0087120:intron | 40.0% | |
| AGATTGGTGAGAATGATTCC+TGG | - | chr1_2:67928928-67928947 | None:intergenic | 40.0% | |
| ACGATAGTGCCACATAACAT+TGG | - | chr1_2:67929080-67929099 | None:intergenic | 40.0% | |
| AATGTTATGTGGCACTATCG+TGG | + | chr1_2:67929079-67929098 | Msa0087120:intron | 40.0% | |
| ! | GCACTATCGTGGATTTTACA+AGG | + | chr1_2:67929090-67929109 | Msa0087120:intron | 40.0% |
| CAATGCTACATAGCATGTTG+TGG | - | chr1_2:67929445-67929464 | None:intergenic | 40.0% | |
| CAAAAGAGAATCACAGGGAA+GGG | + | chr1_2:67929518-67929537 | Msa0087120:CDS | 40.0% | |
| CATGGCATCAAGTTTAGCAG+AGG | - | chr1_2:67926658-67926677 | None:intergenic | 45.0% | |
| CTCTGCTAAACTTGATGCCA+TGG | + | chr1_2:67926656-67926675 | Msa0087120:CDS | 45.0% | |
| TGAGCTGAGATCTAACTCCA+TGG | - | chr1_2:67926676-67926695 | None:intergenic | 45.0% | |
| GGAGTTAGATCTCAGCTCAT+TGG | + | chr1_2:67926677-67926696 | Msa0087120:CDS | 45.0% | |
| ATGTGGCCATTCAGCAAGAA+AGG | + | chr1_2:67926934-67926953 | Msa0087120:CDS | 45.0% | |
| TGTGGCCATTCAGCAAGAAA+GGG | + | chr1_2:67926935-67926954 | Msa0087120:CDS | 45.0% | |
| GAAACCCCTTTCTTGCTGAA+TGG | - | chr1_2:67926943-67926962 | None:intergenic | 45.0% | |
| TTCAGCAAGAAAGGGGTTTC+TGG | + | chr1_2:67926943-67926962 | Msa0087120:CDS | 45.0% | |
| ! | AAAGGGGTTTCTGGATTCTC+AGG | + | chr1_2:67926952-67926971 | Msa0087120:CDS | 45.0% |
| ! | AAGGGGTTTCTGGATTCTCA+GGG | + | chr1_2:67926953-67926972 | Msa0087120:CDS | 45.0% |
| GACCAGTGACAATAGCAATG+AGG | - | chr1_2:67927023-67927042 | None:intergenic | 45.0% | |
| AGTCTCAACTCCAATACCAC+TGG | - | chr1_2:67927391-67927410 | None:intergenic | 45.0% | |
| GCATCCGAATTTGATTCCAC+TGG | + | chr1_2:67927570-67927589 | Msa0087120:CDS | 45.0% | |
| GATGTTCAATGGAAGACCAG+TGG | - | chr1_2:67927589-67927608 | None:intergenic | 45.0% | |
| TATGATAAGGAAACCCCCAG+CGG | - | chr1_2:67927889-67927908 | None:intergenic | 45.0% | |
| TAAAGGGCTAACTTGACACG+GGG | + | chr1_2:67927985-67928004 | Msa0087120:intron | 45.0% | |
| CAACAAACCACCTAGGTATG+TGG | + | chr1_2:67928258-67928277 | Msa0087120:intron | 45.0% | |
| TACAGCAAATGGGGTGCATA+TGG | + | chr1_2:67928725-67928744 | Msa0087120:CDS | 45.0% | |
| ! | GAGGCATCTTGCAAGTTCAT+TGG | - | chr1_2:67928780-67928799 | None:intergenic | 45.0% |
| TGAACTTGCAAGATGCCTCA+AGG | + | chr1_2:67928781-67928800 | Msa0087120:CDS | 45.0% | |
| AGAGAAACTAGCACACCTTG+AGG | - | chr1_2:67928799-67928818 | None:intergenic | 45.0% | |
| ACCAATCTTTCCCGCCATAT+GGG | + | chr1_2:67928940-67928959 | Msa0087120:CDS | 45.0% | |
| TACCGTCAAGTACACCCATA+TGG | - | chr1_2:67928957-67928976 | None:intergenic | 45.0% | |
| TGTGGCCAAAAGAGAATCAC+AGG | + | chr1_2:67929512-67929531 | Msa0087120:CDS | 45.0% | |
| GTGGCCAAAAGAGAATCACA+GGG | + | chr1_2:67929513-67929532 | Msa0087120:CDS | 45.0% | |
| ! | CCTTCCCTGTGATTCTCTTT+TGG | - | chr1_2:67929520-67929539 | None:intergenic | 45.0% |
| CCAAAAGAGAATCACAGGGA+AGG | + | chr1_2:67929517-67929536 | Msa0087120:CDS | 45.0% | |
| !!! | AAAATGAAATTTTTTAAAAA+TGG | - | chr1_2:67927068-67927087 | None:intergenic | 5.0% |
| GTGGCCATTCAGCAAGAAAG+GGG | + | chr1_2:67926936-67926955 | Msa0087120:CDS | 50.0% | |
| ! | GGCCTCATTGCTATTGTCAC+TGG | + | chr1_2:67927018-67927037 | Msa0087120:CDS | 50.0% |
| !! | ATGGTAACAGGAGCATCCAG+TGG | + | chr1_2:67927372-67927391 | Msa0087120:intron | 50.0% |
| !! | ACAGGAGCATCCAGTGGTAT+TGG | + | chr1_2:67927378-67927397 | Msa0087120:intron | 50.0% |
| ATGCGTGTTCTTGCTTTGCG+TGG | + | chr1_2:67927411-67927430 | Msa0087120:CDS | 50.0% | |
| GCGTGGTGTCCATGTGATTA+TGG | + | chr1_2:67927428-67927447 | Msa0087120:CDS | 50.0% | |
| CTTCGAGTGTGCTCTTCTCA+AGG | - | chr1_2:67927841-67927860 | None:intergenic | 50.0% | |
| ! | CTTGAGAAGAGCACACTCGA+AGG | + | chr1_2:67927839-67927858 | Msa0087120:intron | 50.0% |
| AGGTCTCAAGCCTAACCACT+AGG | + | chr1_2:67927859-67927878 | Msa0087120:intron | 50.0% | |
| TAACCACTAGGCAAACCGCT+GGG | + | chr1_2:67927871-67927890 | Msa0087120:intron | 50.0% | |
| !! | TCTTGATCAGGATGATGGGG+TGG | + | chr1_2:67928879-67928898 | Msa0087120:intron | 50.0% |
| CACCAATCTTTCCCGCCATA+TGG | + | chr1_2:67928939-67928958 | Msa0087120:CDS | 50.0% | |
| ! | ACCCATATGGCGGGAAAGAT+TGG | - | chr1_2:67928944-67928963 | None:intergenic | 50.0% |
| GTCAAGTACACCCATATGGC+GGG | - | chr1_2:67928953-67928972 | None:intergenic | 50.0% | |
| CGTCAAGTACACCCATATGG+CGG | - | chr1_2:67928954-67928973 | None:intergenic | 50.0% | |
| CGCCATATGGGTGTACTTGA+CGG | + | chr1_2:67928952-67928971 | Msa0087120:CDS | 50.0% | |
| GCTGCCCCCTACATTTAGAT+AGG | - | chr1_2:67929423-67929442 | None:intergenic | 50.0% | |
| AGCATTGCACCCACAAGTGA+AGG | + | chr1_2:67929458-67929477 | Msa0087120:CDS | 50.0% | |
| GCATTGCACCCACAAGTGAA+GGG | + | chr1_2:67929459-67929478 | Msa0087120:CDS | 50.0% | |
| CGCTAACTCCCTTCACTTGT+GGG | - | chr1_2:67929470-67929489 | None:intergenic | 50.0% | |
| CCACAAGTGAAGGGAGTTAG+CGG | + | chr1_2:67929468-67929487 | Msa0087120:CDS | 50.0% | |
| CAGCGGTTTGCCTAGTGGTT+AGG | - | chr1_2:67927872-67927891 | None:intergenic | 55.0% | |
| CTAACCACTAGGCAAACCGC+TGG | + | chr1_2:67927870-67927889 | Msa0087120:intron | 55.0% | |
| AACCACTAGGCAAACCGCTG+GGG | + | chr1_2:67927872-67927891 | Msa0087120:intron | 55.0% | |
| CCGCTAACTCCCTTCACTTG+TGG | - | chr1_2:67929471-67929490 | None:intergenic | 55.0% | |
| ! | ACAGGGAAGGGACGCTGATT+TGG | + | chr1_2:67929530-67929549 | Msa0087120:CDS | 55.0% |
| ACCACTAGGCAAACCGCTGG+GGG | + | chr1_2:67927873-67927892 | Msa0087120:intron | 60.0% | |
| ACCCCCAGCGGTTTGCCTAG+TGG | - | chr1_2:67927877-67927896 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 67926609 | 67929599 | 67926609 | ID=Msa0087120;Name=Msa0087120 |
| chr1_2 | mRNA | 67926609 | 67929599 | 67926609 | ID=Msa0087120-mRNA-1;Parent=Msa0087120;Name=Msa0087120-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.75|0.55|1|1|1|9|0|359 |
| chr1_2 | exon | 67926609 | 67926722 | 67926609 | ID=Msa0087120-mRNA-1:exon:23137;Parent=Msa0087120-mRNA-1 |
| chr1_2 | exon | 67926916 | 67927039 | 67926916 | ID=Msa0087120-mRNA-1:exon:23138;Parent=Msa0087120-mRNA-1 |
| chr1_2 | exon | 67927382 | 67927613 | 67927382 | ID=Msa0087120-mRNA-1:exon:23139;Parent=Msa0087120-mRNA-1 |
| chr1_2 | exon | 67928193 | 67928272 | 67928193 | ID=Msa0087120-mRNA-1:exon:23140;Parent=Msa0087120-mRNA-1 |
| chr1_2 | exon | 67928436 | 67928589 | 67928436 | ID=Msa0087120-mRNA-1:exon:23141;Parent=Msa0087120-mRNA-1 |
| chr1_2 | exon | 67928724 | 67928802 | 67928724 | ID=Msa0087120-mRNA-1:exon:23142;Parent=Msa0087120-mRNA-1 |
| chr1_2 | exon | 67928889 | 67928973 | 67928889 | ID=Msa0087120-mRNA-1:exon:23143;Parent=Msa0087120-mRNA-1 |
| chr1_2 | exon | 67929262 | 67929308 | 67929262 | ID=Msa0087120-mRNA-1:exon:23144;Parent=Msa0087120-mRNA-1 |
| chr1_2 | exon | 67929435 | 67929599 | 67929435 | ID=Msa0087120-mRNA-1:exon:23145;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67926609 | 67926722 | 67926609 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67926916 | 67927039 | 67926916 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67927382 | 67927613 | 67927382 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67928193 | 67928272 | 67928193 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67928436 | 67928589 | 67928436 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67928724 | 67928802 | 67928724 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67928889 | 67928973 | 67928889 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67929262 | 67929308 | 67929262 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| chr1_2 | CDS | 67929435 | 67929599 | 67929435 | ID=Msa0087120-mRNA-1:cds;Parent=Msa0087120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
