Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481440 | XP_013445033.1 | 90.504 | 337 | 26 | 4 | 1 | 334 | 1 | 334 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481440 | sp|Q66GR3|BH130_ARATH | 31.118 | 331 | 144 | 13 | 40 | 334 | 15 | 297 | 2.26e-20 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481440 | A0A072TQD6 | 90.504 | 337 | 26 | 4 | 1 | 334 | 1 | 334 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa0481440 | 0.801696 | 7.969957e-49 | -8.615850e-47 |
| Msa0027020 | Msa0481440 | -0.804596 | 2.001901e-49 | -8.615850e-47 |
| Msa0087120 | Msa0481440 | 0.805711 | 1.170039e-49 | -8.615850e-47 |
| Msa0098380 | Msa0481440 | 0.807001 | 6.256666e-50 | -8.615850e-47 |
| Msa0105140 | Msa0481440 | -0.806426 | 8.273688e-50 | -8.615850e-47 |
| Msa0141410 | Msa0481440 | 0.805757 | 1.144189e-49 | -8.615850e-47 |
| Msa0143640 | Msa0481440 | 0.818158 | 2.268401e-52 | -8.615850e-47 |
| Msa0167160 | Msa0481440 | -0.809041 | 2.302170e-50 | -8.615850e-47 |
| Msa0186240 | Msa0481440 | 0.810581 | 1.073483e-50 | -8.615850e-47 |
| Msa0202380 | Msa0481440 | 0.809566 | 1.776351e-50 | -8.615850e-47 |
| Msa0224590 | Msa0481440 | 0.806728 | 7.143387e-50 | -8.615850e-47 |
| Msa0375930 | Msa0481440 | -0.808224 | 3.439688e-50 | -8.615850e-47 |
| Msa0383900 | Msa0481440 | 0.817301 | 3.539860e-52 | -8.615850e-47 |
| Msa0383960 | Msa0481440 | 0.802876 | 4.555274e-49 | -8.615850e-47 |
| Msa0390160 | Msa0481440 | 0.800654 | 1.302558e-48 | -8.615850e-47 |
| Msa0393100 | Msa0481440 | 0.804186 | 2.437673e-49 | -8.615850e-47 |
| Msa0405200 | Msa0481440 | 0.809841 | 1.549752e-50 | -8.615850e-47 |
| Msa0424570 | Msa0481440 | -0.805199 | 1.497664e-49 | -8.615850e-47 |
| Msa0434300 | Msa0481440 | 0.807878 | 4.075109e-50 | -8.615850e-47 |
| Msa0434400 | Msa0481440 | 0.820723 | 5.900374e-53 | -8.615850e-47 |
| Msa0434460 | Msa0481440 | 0.800263 | 1.564614e-48 | -8.615850e-47 |
| Msa0441750 | Msa0481440 | 0.809329 | 1.997123e-50 | -8.615850e-47 |
| Msa0449490 | Msa0481440 | 0.815007 | 1.152278e-51 | -8.615850e-47 |
| Msa0449500 | Msa0481440 | 0.807029 | 6.172092e-50 | -8.615850e-47 |
| Msa0459930 | Msa0481440 | 0.815982 | 6.991266e-52 | -8.615850e-47 |
| Msa0478080 | Msa0481440 | 0.810520 | 1.106384e-50 | -8.615850e-47 |
| Msa0480540 | Msa0481440 | 0.802589 | 5.222615e-49 | -8.615850e-47 |
| Msa0480550 | Msa0481440 | 0.806927 | 6.484420e-50 | -8.615850e-47 |
| Msa0481440 | Msa0490060 | 0.817371 | 3.414729e-52 | -8.615850e-47 |
| Msa0481440 | Msa0490100 | 0.809329 | 1.996488e-50 | -8.615850e-47 |
| Msa0481440 | Msa0493870 | 0.802896 | 4.513944e-49 | -8.615850e-47 |
| Msa0481440 | Msa0510870 | 0.817674 | 2.916783e-52 | -8.615850e-47 |
| Msa0481440 | Msa0516000 | -0.808649 | 2.792261e-50 | -8.615850e-47 |
| Msa0481440 | Msa0522140 | 0.814224 | 1.717784e-51 | -8.615850e-47 |
| Msa0481440 | Msa0522170 | 0.815446 | 9.208931e-52 | -8.615850e-47 |
| Msa0481440 | Msa0534610 | 0.802222 | 6.216428e-49 | -8.615850e-47 |
| Msa0481440 | Msa0550980 | -0.811982 | 5.329932e-51 | -8.615850e-47 |
| Msa0481440 | Msa0554770 | -0.803557 | 3.293134e-49 | -8.615850e-47 |
| Msa0481440 | Msa0561110 | 0.801321 | 9.514658e-49 | -8.615850e-47 |
| Msa0481440 | Msa0561830 | 0.806656 | 7.398211e-50 | -8.615850e-47 |
| Msa0481440 | Msa0565180 | 0.804165 | 2.461751e-49 | -8.615850e-47 |
| Msa0481440 | Msa0568780 | -0.820205 | 7.756052e-53 | -8.615850e-47 |
| Msa0481440 | Msa0580840 | 0.813897 | 2.028205e-51 | -8.615850e-47 |
| Msa0481440 | Msa0580890 | -0.801059 | 1.076387e-48 | -8.615850e-47 |
| Msa0481440 | Msa0581350 | 0.800057 | 1.722667e-48 | -8.615850e-47 |
| Msa0481440 | Msa0583270 | -0.804780 | 1.832628e-49 | -8.615850e-47 |
| Msa0481440 | Msa0588730 | 0.800760 | 1.239147e-48 | -8.615850e-47 |
| Msa0481440 | Msa0597180 | 0.823591 | 1.275457e-53 | -8.615850e-47 |
| Msa0481440 | Msa0603310 | 0.831171 | 1.942050e-55 | -8.615850e-47 |
| Msa0481440 | Msa0606340 | -0.817285 | 3.569945e-52 | -8.615850e-47 |
| Msa0481440 | Msa0606600 | 0.801244 | 9.865711e-49 | -8.615850e-47 |
| Msa0481440 | Msa0614960 | 0.803799 | 2.934073e-49 | -8.615850e-47 |
| Msa0481440 | Msa0615070 | 0.808243 | 3.407557e-50 | -8.615850e-47 |
| Msa0481440 | Msa0619030 | -0.825994 | 3.459990e-54 | -8.615850e-47 |
| Msa0481440 | Msa0629160 | 0.803787 | 2.950443e-49 | -8.615850e-47 |
| Msa0481440 | Msa0647300 | 0.803787 | 2.950053e-49 | -8.615850e-47 |
| Msa0481440 | Msa0652590 | 0.812738 | 3.644284e-51 | -8.615850e-47 |
| Msa0481440 | Msa0652600 | 0.818183 | 2.239174e-52 | -8.615850e-47 |
| Msa0481440 | Msa0657340 | 0.814346 | 1.614734e-51 | -8.615850e-47 |
| Msa0481440 | Msa0666950 | 0.802629 | 5.122615e-49 | -8.615850e-47 |
| Msa0481440 | Msa0675630 | 0.803230 | 3.849033e-49 | -8.615850e-47 |
| Msa0481440 | Msa0686830 | 0.817361 | 3.431871e-52 | -8.615850e-47 |
| Msa0481440 | Msa0690100 | -0.809622 | 1.727882e-50 | -8.615850e-47 |
| Msa0481440 | Msa0695250 | -0.804798 | 1.817132e-49 | -8.615850e-47 |
| Msa0481440 | Msa0699170 | 0.812297 | 4.551060e-51 | -8.615850e-47 |
| Msa0481440 | Msa0704350 | -0.804098 | 2.543216e-49 | -8.615850e-47 |
| Msa0481440 | Msa0725580 | 0.824547 | 7.609082e-54 | -8.615850e-47 |
| Msa0481440 | Msa0731580 | 0.802899 | 4.506711e-49 | -8.615850e-47 |
| Msa0481440 | Msa0736560 | 0.822414 | 2.399883e-53 | -8.615850e-47 |
| Msa0481440 | Msa0738680 | 0.815577 | 8.609395e-52 | -8.615850e-47 |
| Msa0481440 | Msa0739820 | -0.807839 | 4.154297e-50 | -8.615850e-47 |
| Msa0481440 | Msa0743370 | 0.824285 | 8.769540e-54 | -8.615850e-47 |
| Msa0481440 | Msa0744550 | 0.804779 | 1.833504e-49 | -8.615850e-47 |
| Msa0481440 | Msa0744560 | 0.803999 | 2.665717e-49 | -8.615850e-47 |
| Msa0481440 | Msa0744710 | 0.811155 | 8.065616e-51 | -8.615850e-47 |
| Msa0481440 | Msa0766170 | 0.836940 | 6.968447e-57 | -8.615850e-47 |
| Msa0481440 | Msa0792410 | 0.802408 | 5.691103e-49 | -8.615850e-47 |
| Msa0481440 | Msa0795320 | 0.802263 | 6.095650e-49 | -8.615850e-47 |
| Msa0481440 | Msa0802600 | 0.813337 | 2.694249e-51 | -8.615850e-47 |
| Msa0481440 | Msa0819150 | 0.812779 | 3.570328e-51 | -8.615850e-47 |
| Msa0481440 | Msa0826240 | 0.814379 | 1.587927e-51 | -8.615850e-47 |
| Msa0481440 | Msa0829250 | -0.818420 | 1.978852e-52 | -8.615850e-47 |
| Msa0481440 | Msa0829990 | 0.803237 | 3.837173e-49 | -8.615850e-47 |
| Msa0481440 | Msa0838210 | 0.822183 | 2.714539e-53 | -8.615850e-47 |
| Msa0481440 | Msa0845670 | 0.802640 | 5.096942e-49 | -8.615850e-47 |
| Msa0481440 | Msa0855260 | 0.816522 | 5.294894e-52 | -8.615850e-47 |
| Msa0481440 | Msa0882480 | -0.806231 | 9.095274e-50 | -8.615850e-47 |
| Msa0481440 | Msa0901270 | 0.821896 | 3.164767e-53 | -8.615850e-47 |
| Msa0481440 | Msa0901290 | 0.801560 | 8.501702e-49 | -8.615850e-47 |
| Msa0481440 | Msa0925940 | 0.810692 | 1.015700e-50 | -8.615850e-47 |
| Msa0481440 | Msa0934290 | -0.810442 | 1.150323e-50 | -8.615850e-47 |
| Msa0481440 | Msa0945160 | -0.801054 | 1.078943e-48 | -8.615850e-47 |
| Msa0481440 | Msa0971780 | -0.818453 | 1.944592e-52 | -8.615850e-47 |
| Msa0481440 | Msa0976400 | 0.800224 | 1.593286e-48 | -8.615850e-47 |
| Msa0481440 | Msa1001120 | 0.842496 | 2.496093e-58 | -8.615850e-47 |
| Msa0481440 | Msa1002550 | -0.809208 | 2.119748e-50 | -8.615850e-47 |
| Msa0481440 | Msa1030210 | 0.836658 | 8.223839e-57 | -8.615850e-47 |
| Msa0481440 | Msa1035050 | 0.834578 | 2.764644e-56 | -8.615850e-47 |
| Msa0481440 | Msa1062060 | 0.805851 | 1.093240e-49 | -8.615850e-47 |
| Msa0481440 | Msa1069250 | 0.832993 | 6.883493e-56 | -8.615850e-47 |
| Msa0481440 | Msa1075090 | 0.848328 | 6.572432e-60 | -8.615850e-47 |
| Msa0481440 | Msa1078120 | -0.808104 | 3.649481e-50 | -8.615850e-47 |
| Msa0481440 | Msa1080820 | 0.812358 | 4.412791e-51 | -8.615850e-47 |
| Msa0481440 | Msa1095590 | 0.846916 | 1.608317e-59 | -8.615850e-47 |
| Msa0481440 | Msa1100330 | 0.802095 | 6.599101e-49 | -8.615850e-47 |
| Msa0481440 | Msa1104020 | -0.806707 | 7.217463e-50 | -8.615850e-47 |
| Msa0481440 | Msa1107220 | 0.808860 | 2.516448e-50 | -8.615850e-47 |
| Msa0481440 | Msa1108560 | 0.808548 | 2.934227e-50 | -8.615850e-47 |
| Msa0481440 | Msa1110900 | 0.826908 | 2.095314e-54 | -8.615850e-47 |
| Msa0481440 | Msa1115980 | 0.844968 | 5.443200e-59 | -8.615850e-47 |
| Msa0481440 | Msa1117770 | -0.803300 | 3.723368e-49 | -8.615850e-47 |
| Msa0481440 | Msa1118960 | 0.814154 | 1.780257e-51 | -8.615850e-47 |
| Msa0481440 | Msa1120580 | 0.810233 | 1.275939e-50 | -8.615850e-47 |
| Msa0481440 | Msa1121720 | -0.803791 | 2.945627e-49 | -8.615850e-47 |
| Msa0481440 | Msa1129120 | -0.802327 | 5.912351e-49 | -8.615850e-47 |
| Msa0481440 | Msa1130150 | -0.804199 | 2.423015e-49 | -8.615850e-47 |
| Msa0481440 | Msa1136630 | 0.841960 | 3.461269e-58 | -8.615850e-47 |
| Msa0481440 | Msa1142390 | 0.833189 | 6.152884e-56 | -8.615850e-47 |
| Msa0481440 | Msa1157110 | 0.801849 | 7.415896e-49 | -8.615850e-47 |
| Msa0481440 | Msa1162430 | 0.807112 | 5.927192e-50 | -8.615850e-47 |
| Msa0481440 | Msa1174280 | 0.835158 | 1.974483e-56 | -8.615850e-47 |
| Msa0481440 | Msa1177650 | 0.800721 | 1.261630e-48 | -8.615850e-47 |
| Msa0481440 | Msa1185270 | 0.803331 | 3.667722e-49 | -8.615850e-47 |
| Msa0481440 | Msa1191530 | -0.809667 | 1.689516e-50 | -8.615850e-47 |
| Msa0481440 | Msa1199540 | -0.810296 | 1.237201e-50 | -8.615850e-47 |
| Msa0481440 | Msa1202110 | 0.849529 | 3.050593e-60 | -8.615850e-47 |
| Msa0481440 | Msa1211610 | 0.818913 | 1.529239e-52 | -8.615850e-47 |
| Msa0481440 | Msa1212150 | -0.809481 | 1.851933e-50 | -8.615850e-47 |
| Msa0481440 | Msa1212210 | -0.802461 | 5.550359e-49 | -8.615850e-47 |
| Msa0481440 | Msa1221270 | 0.802412 | 5.680782e-49 | -8.615850e-47 |
| Msa0481440 | Msa1223960 | 0.817046 | 4.039244e-52 | -8.615850e-47 |
| Msa0481440 | Msa1239210 | 0.805645 | 1.207817e-49 | -8.615850e-47 |
| Msa0481440 | Msa1239940 | 0.852076 | 5.853391e-61 | -8.615850e-47 |
| Msa0481440 | Msa1254870 | 0.846750 | 1.784818e-59 | -8.615850e-47 |
| Msa0481440 | Msa1263110 | 0.805859 | 1.089179e-49 | -8.615850e-47 |
| Msa0481440 | Msa1268360 | 0.801653 | 8.136054e-49 | -8.615850e-47 |
| Msa0481440 | Msa1281300 | 0.881850 | 1.703091e-70 | -8.615850e-47 |
| Msa0481440 | Msa1299480 | 0.812074 | 5.090928e-51 | -8.615850e-47 |
| Msa0481440 | Msa1317740 | 0.804695 | 1.909644e-49 | -8.615850e-47 |
| Msa0481440 | Msa1320160 | 0.812651 | 3.807665e-51 | -8.615850e-47 |
| Msa0481440 | Msa1320430 | 0.875362 | 3.272547e-68 | -8.615850e-47 |
| Msa0481440 | Msa1328430 | 0.846274 | 2.407196e-59 | -8.615850e-47 |
| Msa0481440 | Msa1328680 | -0.801589 | 8.386030e-49 | -8.615850e-47 |
| Msa0481440 | Msa1350590 | -0.802832 | 4.652775e-49 | -8.615850e-47 |
| Msa0481440 | Msa1356100 | -0.801983 | 6.959515e-49 | -8.615850e-47 |
| Msa0481440 | Msa1386910 | -0.806456 | 8.155295e-50 | -8.615850e-47 |
| Msa0481440 | Msa1398140 | 0.801091 | 1.060477e-48 | -8.615850e-47 |
| Msa0481440 | Msa1408230 | -0.802827 | 4.663963e-49 | -8.615850e-47 |
| Msa0481440 | Msa1415510 | -0.800448 | 1.434162e-48 | -8.615850e-47 |
| Msa0481440 | Msa1420540 | 0.814688 | 1.356251e-51 | -8.615850e-47 |
| Msa0481440 | Msa1459920 | 0.831205 | 1.904530e-55 | -8.615850e-47 |
| Msa0481440 | Msa1462610 | 0.802429 | 5.632859e-49 | -8.615850e-47 |
| Msa0242720 | Msa0481440 | 0.826676 | 2.379859e-54 | -8.615850e-47 |
| Msa0253230 | Msa0481440 | -0.811417 | 7.076424e-51 | -8.615850e-47 |
| Msa0265650 | Msa0481440 | 0.838246 | 3.222636e-57 | -8.615850e-47 |
| Msa0294200 | Msa0481440 | 0.812179 | 4.828857e-51 | -8.615850e-47 |
| Msa0299130 | Msa0481440 | -0.803069 | 4.155643e-49 | -8.615850e-47 |
| Msa0303900 | Msa0481440 | 0.819344 | 1.219953e-52 | -8.615850e-47 |
| Msa0306790 | Msa0481440 | 0.803254 | 3.805187e-49 | -8.615850e-47 |
| Msa0307630 | Msa0481440 | 0.806284 | 8.864547e-50 | -8.615850e-47 |
| Msa0316230 | Msa0481440 | 0.805055 | 1.605361e-49 | -8.615850e-47 |
| Msa0320170 | Msa0481440 | 0.822870 | 1.879565e-53 | -8.615850e-47 |
| Msa0333770 | Msa0481440 | 0.810851 | 9.382485e-51 | -8.615850e-47 |
| Msa0340700 | Msa0481440 | -0.811411 | 7.094324e-51 | -8.615850e-47 |
| Msa0345050 | Msa0481440 | 0.806081 | 9.782935e-50 | -8.615850e-47 |
| Msa0345890 | Msa0481440 | 0.800625 | 1.320425e-48 | -8.615850e-47 |
| Msa0353010 | Msa0481440 | 0.804146 | 2.485023e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481440 | MtrunA17_Chr8g0351881 | 90.504 | 337 | 26 | 4 | 1 | 334 | 1 | 334 | 0.0 | 587 |
| Msa0481440 | MtrunA17_Chr3g0087771 | 48.901 | 364 | 106 | 16 | 18 | 334 | 10 | 340 | 1.07e-83 | 259 |
| Msa0481440 | MtrunA17_Chr1g0174271 | 32.424 | 330 | 179 | 10 | 28 | 334 | 8 | 316 | 1.13e-24 | 103 |
| Msa0481440 | MtrunA17_Chr2g0329041 | 30.303 | 363 | 173 | 14 | 32 | 334 | 8 | 350 | 6.54e-21 | 92.8 |
| Msa0481440 | MtrunA17_Chr4g0032951 | 33.824 | 204 | 100 | 10 | 155 | 334 | 181 | 373 | 8.29e-17 | 80.9 |
| Msa0481440 | MtrunA17_Chr7g0258181 | 67.347 | 49 | 16 | 0 | 286 | 334 | 213 | 261 | 1.41e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0481440 | AT2G42280.3 | 31.481 | 324 | 152 | 13 | 40 | 334 | 15 | 297 | 2.11e-21 | 94.0 |
| Msa0481440 | AT2G42280.1 | 31.118 | 331 | 144 | 13 | 40 | 334 | 15 | 297 | 2.30e-21 | 94.0 |
| Msa0481440 | AT2G42280.2 | 31.212 | 330 | 143 | 13 | 40 | 333 | 15 | 296 | 5.12e-21 | 92.0 |
| Msa0481440 | AT1G05805.1 | 28.909 | 339 | 147 | 14 | 36 | 334 | 17 | 301 | 4.53e-13 | 69.7 |
| Msa0481440 | AT1G51140.1 | 27.273 | 330 | 191 | 12 | 32 | 334 | 15 | 322 | 3.67e-12 | 67.0 |
Find 57 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAAATGGATTCAAAATT+TGG | 0.143373 | 3_3:+87532508 | Msa0481440:CDS |
| TATTGTATTCCATGTGAAAA+AGG | 0.176835 | 3_3:-87532769 | None:intergenic |
| TGTTACCAGGGTGTAGATTT+TGG | 0.188539 | 3_3:+87535113 | Msa0481440:intron |
| ACCCTCTCTGCAATGCTTCT+AGG | 0.208569 | 3_3:-87535272 | None:intergenic |
| ACCACTATCAACCGAATAAT+TGG | 0.239497 | 3_3:-87532956 | None:intergenic |
| GGATTTCCAAATGGTTCTTT+AGG | 0.260650 | 3_3:+87532850 | Msa0481440:CDS |
| CAATACAATGATTACTCTTA+TGG | 0.263413 | 3_3:+87532787 | Msa0481440:CDS |
| CAATTTGCTTGAAGAGCTTC+AGG | 0.284637 | 3_3:-87534379 | None:intergenic |
| AGAGAGGTAGGAAGTGTAAA+TGG | 0.308528 | 3_3:+87534259 | Msa0481440:intron |
| ATCCTTGATTATGTTGAGTT+TGG | 0.317397 | 3_3:-87532831 | None:intergenic |
| GCGTTAAGCCGGAATTGTTT+TGG | 0.328492 | 3_3:-87532558 | None:intergenic |
| GTGAGTGGCAAAGCCTCTTT+TGG | 0.336425 | 3_3:-87535249 | None:intergenic |
| TCCAATTATTCGGTTGATAG+TGG | 0.369287 | 3_3:+87532955 | Msa0481440:CDS |
| CCCTCTCTGCAATGCTTCTA+GGG | 0.373214 | 3_3:-87535271 | None:intergenic |
| CATTGTCTCCAAAACAATTC+CGG | 0.388810 | 3_3:+87532550 | Msa0481440:CDS |
| CTTCTCCGTAGGAGCCATCT+TGG | 0.392779 | 3_3:-87535186 | None:intergenic |
| TCCCTCTACAAGTTCAGAAA+TGG | 0.398455 | 3_3:+87532693 | Msa0481440:CDS |
| CACTGACAAAGATTCAGAAT+TGG | 0.412608 | 3_3:-87532728 | None:intergenic |
| AGAAACATGGGAAATGATAA+TGG | 0.418925 | 3_3:+87534412 | Msa0481440:CDS |
| TTCAAATGCTTTGGAAAGTC+AGG | 0.424743 | 3_3:+87534546 | Msa0481440:CDS |
| TCAACACCTAAAGAACCATT+TGG | 0.425199 | 3_3:-87532856 | None:intergenic |
| AATGGTTCTTTAGGTGTTGA+AGG | 0.428511 | 3_3:+87532859 | Msa0481440:CDS |
| TTCAATGAAGAACACAGAAA+TGG | 0.438657 | 3_3:+87532495 | Msa0481440:CDS |
| GTCAGTGAAACAAGAAGAAA+AGG | 0.444248 | 3_3:+87532744 | Msa0481440:CDS |
| CCCTAGAAGCATTGCAGAGA+GGG | 0.444514 | 3_3:+87535271 | Msa0481440:CDS |
| TGTAAAATTCGTGCCAAAAG+AGG | 0.450273 | 3_3:+87535236 | Msa0481440:CDS |
| ATAATTGCTCCAATCTCATT+AGG | 0.465778 | 3_3:+87532905 | Msa0481440:CDS |
| TACATGGAACAGATCCTTGA+AGG | 0.468658 | 3_3:-87535217 | None:intergenic |
| CTAGCTTCACCAATGACTAC+TGG | 0.472078 | 3_3:+87534455 | Msa0481440:CDS |
| TTCTTCCAAGATGGCTCCTA+CGG | 0.484781 | 3_3:+87535181 | Msa0481440:CDS |
| AACCTATGTTTGTGTCTACA+AGG | 0.486036 | 3_3:-87532615 | None:intergenic |
| GCCTAGCTCTTCTTCCAAGA+TGG | 0.486683 | 3_3:+87535172 | Msa0481440:CDS |
| AGCTAGGCAGACTCAAATGA+TGG | 0.490931 | 3_3:-87535157 | None:intergenic |
| CATAATCAAGGATTTCCAAA+TGG | 0.493678 | 3_3:+87532841 | Msa0481440:CDS |
| AGAACTATCCCAGTAGTCAT+TGG | 0.496050 | 3_3:-87534464 | None:intergenic |
| TACCAAACTCAACATAATCA+AGG | 0.522748 | 3_3:+87532829 | Msa0481440:CDS |
| TTCCATTTCTGAACTTGTAG+AGG | 0.527988 | 3_3:-87532695 | None:intergenic |
| ACTTTCCAAAGCATTTGAAG+TGG | 0.539932 | 3_3:-87534542 | None:intergenic |
| TGAACGATACCGCGTTAAGC+CGG | 0.550117 | 3_3:-87532569 | None:intergenic |
| TGTATTAAAAGTAGAAACAT+GGG | 0.555635 | 3_3:+87534400 | Msa0481440:CDS |
| TCCATTTCTGAACTTGTAGA+GGG | 0.558247 | 3_3:-87532694 | None:intergenic |
| TAGCTTCACCAATGACTACT+GGG | 0.565945 | 3_3:+87534456 | Msa0481440:CDS |
| AGATTCAGAATTGGTAAACA+TGG | 0.566542 | 3_3:-87532719 | None:intergenic |
| TTGTATTAAAAGTAGAAACA+TGG | 0.569384 | 3_3:+87534399 | Msa0481440:CDS |
| CAGTAGTCATTGGTGAAGCT+AGG | 0.577944 | 3_3:-87534454 | None:intergenic |
| AGGCTTGTAAGTAACGAGCT+TGG | 0.582153 | 3_3:-87532595 | None:intergenic |
| TGGCATCTTGATAGAGCAAG+AGG | 0.582833 | 3_3:-87534338 | None:intergenic |
| CAAGCTTTCAACTACTCTGA+AGG | 0.588993 | 3_3:+87532469 | Msa0481440:CDS |
| TGCAATGCTTCTAGGGTGAG+TGG | 0.590036 | 3_3:-87535264 | None:intergenic |
| CAAGCTACTACATCATCTAG+TGG | 0.611174 | 3_3:+87534283 | Msa0481440:CDS |
| AAAACAATTCCGGCTTAACG+CGG | 0.617284 | 3_3:+87532560 | Msa0481440:CDS |
| ATCTTGATAGAGCAAGAGGA+TGG | 0.627820 | 3_3:-87534334 | None:intergenic |
| GCTAGGCAGACTCAAATGAT+GGG | 0.628666 | 3_3:-87535156 | None:intergenic |
| GCTTTCAACTACTCTGAAGG+TGG | 0.629565 | 3_3:+87532472 | Msa0481440:CDS |
| GCCATCTTGGAAGAAGAGCT+AGG | 0.634212 | 3_3:-87535173 | None:intergenic |
| AGCCTTGTAGACACAAACAT+AGG | 0.644549 | 3_3:+87532613 | Msa0481440:CDS |
| ACCCTAGAAGCATTGCAGAG+AGG | 0.691130 | 3_3:+87535270 | Msa0481440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTTTTTTATCTTACT+TGG | + | chr3_3:87532978-87532997 | Msa0481440:intron | 15.0% |
| !!! | ATACTAAAATTTAGTTTAGA+AGG | + | chr3_3:87533698-87533717 | Msa0481440:intron | 15.0% |
| !!! | AAATATATGCATATTTTTCT+AGG | + | chr3_3:87533735-87533754 | Msa0481440:intron | 15.0% |
| !!! | AGTAAAATATACTTTTTCAA+TGG | - | chr3_3:87534190-87534209 | None:intergenic | 15.0% |
| !!! | AAAAGTATATTTTACTTTGT+AGG | + | chr3_3:87534194-87534213 | Msa0481440:intron | 15.0% |
| !!! | AAAGTATATTTTACTTTGTA+GGG | + | chr3_3:87534195-87534214 | Msa0481440:intron | 15.0% |
| !! | CAAAATGAGATTAAAAATTT+GGG | - | chr3_3:87535009-87535028 | None:intergenic | 15.0% |
| !!! | TTACTTGGTAATATCTATTA+TGG | + | chr3_3:87532993-87533012 | Msa0481440:intron | 20.0% |
| !!! | ATTTCTTTTTTGATAATGCT+TGG | + | chr3_3:87533059-87533078 | Msa0481440:intron | 20.0% |
| !!! | TCTAAGAAAAGTAATTTTGT+AGG | + | chr3_3:87533302-87533321 | Msa0481440:intron | 20.0% |
| !!! | ATACCTGTTCTTATTTTTTA+TGG | + | chr3_3:87533333-87533352 | Msa0481440:intron | 20.0% |
| !! | TTTCCATAAAAAATAAGAAC+AGG | - | chr3_3:87533339-87533358 | None:intergenic | 20.0% |
| !! | TGATAATATAGTAAAGCAAT+TGG | + | chr3_3:87533461-87533480 | Msa0481440:intron | 20.0% |
| !! | GATAATATAGTAAAGCAATT+GGG | + | chr3_3:87533462-87533481 | Msa0481440:intron | 20.0% |
| !! | TAATTAATTGTCTATTCATC+AGG | - | chr3_3:87533586-87533605 | None:intergenic | 20.0% |
| !! | GAATAGACAATTAATTATCT+TGG | + | chr3_3:87533589-87533608 | Msa0481440:intron | 20.0% |
| !! | TAATTATCTTGGACATTATT+AGG | + | chr3_3:87533600-87533619 | Msa0481440:intron | 20.0% |
| !! | TCTAAAAAAACTTGTACTAA+TGG | + | chr3_3:87534219-87534238 | Msa0481440:intron | 20.0% |
| !! | TTGTATTAAAAGTAGAAACA+TGG | + | chr3_3:87534399-87534418 | Msa0481440:CDS | 20.0% |
| !! | TGTATTAAAAGTAGAAACAT+GGG | + | chr3_3:87534400-87534419 | Msa0481440:CDS | 20.0% |
| !! | CTAAGTATAATCTTTACAAA+AGG | - | chr3_3:87534613-87534632 | None:intergenic | 20.0% |
| !!! | AACTTTTTGAGAAAAAATTC+TGG | - | chr3_3:87534803-87534822 | None:intergenic | 20.0% |
| !!! | AGATTAAAAATTTGGGTTTT+TGG | - | chr3_3:87535002-87535021 | None:intergenic | 20.0% |
| !! | GCAAAATGAGATTAAAAATT+TGG | - | chr3_3:87535010-87535029 | None:intergenic | 20.0% |
| !!! | TTTTTTTAGTAGAGAATAGT+AGG | + | chr3_3:87535032-87535051 | Msa0481440:intron | 20.0% |
| !! | ACAGAAATGGATTCAAAATT+TGG | + | chr3_3:87532508-87532527 | Msa0481440:CDS | 25.0% |
| ! | ATTGTATTCCATGTGAAAAA+GGG | - | chr3_3:87532771-87532790 | None:intergenic | 25.0% |
| ! | TATTGTATTCCATGTGAAAA+AGG | - | chr3_3:87532772-87532791 | None:intergenic | 25.0% |
| ! | CAATACAATGATTACTCTTA+TGG | + | chr3_3:87532787-87532806 | Msa0481440:CDS | 25.0% |
| !! | TGAGTTTTTCTCCAATTATT+CGG | + | chr3_3:87532945-87532964 | Msa0481440:CDS | 25.0% |
| ! | ATCAAGCTCAAATCTATTAT+CGG | + | chr3_3:87533083-87533102 | Msa0481440:intron | 25.0% |
| !! | AAATCAGGTCTTTTCTTTTA+CGG | - | chr3_3:87533194-87533213 | None:intergenic | 25.0% |
| ! | GGATCAACTAAAAATTTAAG+AGG | + | chr3_3:87533229-87533248 | Msa0481440:intron | 25.0% |
| ! | CAATAATACTGCACAAAATA+GGG | - | chr3_3:87533443-87533462 | None:intergenic | 25.0% |
| ! | TCAATAATACTGCACAAAAT+AGG | - | chr3_3:87533444-87533463 | None:intergenic | 25.0% |
| ! | TATATTTACTTAACACACGA+TGG | + | chr3_3:87533784-87533803 | Msa0481440:intron | 25.0% |
| ! | AACAAGACATGTATTGTTAA+GGG | - | chr3_3:87533908-87533927 | None:intergenic | 25.0% |
| ! | AAACAAGACATGTATTGTTA+AGG | - | chr3_3:87533909-87533928 | None:intergenic | 25.0% |
| !! | TTAACAATACATGTCTTGTT+TGG | + | chr3_3:87533908-87533927 | Msa0481440:intron | 25.0% |
| ! | GTAAAAGTAGTTTATGCATA+AGG | - | chr3_3:87533953-87533972 | None:intergenic | 25.0% |
| ! | TCCAAAAAATGCTACTAATA+AGG | + | chr3_3:87534504-87534523 | Msa0481440:CDS | 25.0% |
| ! | CCAAAAAATGCTACTAATAA+GGG | + | chr3_3:87534505-87534524 | Msa0481440:CDS | 25.0% |
| !!! | GAATTTCCATTTTAACCAAT+TGG | + | chr3_3:87534587-87534606 | Msa0481440:intron | 25.0% |
| !!! | CTTGTTTTAGGTAAAATTGT+GGG | - | chr3_3:87534711-87534730 | None:intergenic | 25.0% |
| !!! | TCTTGTTTTAGGTAAAATTG+TGG | - | chr3_3:87534712-87534731 | None:intergenic | 25.0% |
| ! | TTGGATCAAAATTGTGAAAT+CGG | - | chr3_3:87534778-87534797 | None:intergenic | 25.0% |
| ! | TCTCTTTAGATTCAAAATTC+GGG | - | chr3_3:87534857-87534876 | None:intergenic | 25.0% |
| ! | CTCTCTTTAGATTCAAAATT+CGG | - | chr3_3:87534858-87534877 | None:intergenic | 25.0% |
| ! | ACAAAAAATTATCACTTTCG+AGG | + | chr3_3:87534881-87534900 | Msa0481440:intron | 25.0% |
| !! | CATTGTACCTTAAACTTTTA+TGG | + | chr3_3:87535069-87535088 | Msa0481440:intron | 25.0% |
| ! | TCAACAACCATAAAAGTTTA+AGG | - | chr3_3:87535079-87535098 | None:intergenic | 25.0% |
| ! | TTGTGAAAATTTATGTTACC+AGG | + | chr3_3:87535100-87535119 | Msa0481440:intron | 25.0% |
| ! | TGTGAAAATTTATGTTACCA+GGG | + | chr3_3:87535101-87535120 | Msa0481440:intron | 25.0% |
| TTCAATGAAGAACACAGAAA+TGG | + | chr3_3:87532495-87532514 | Msa0481440:CDS | 30.0% | |
| AGATTCAGAATTGGTAAACA+TGG | - | chr3_3:87532722-87532741 | None:intergenic | 30.0% | |
| TACCAAACTCAACATAATCA+AGG | + | chr3_3:87532829-87532848 | Msa0481440:CDS | 30.0% | |
| ATCCTTGATTATGTTGAGTT+TGG | - | chr3_3:87532834-87532853 | None:intergenic | 30.0% | |
| CATAATCAAGGATTTCCAAA+TGG | + | chr3_3:87532841-87532860 | Msa0481440:CDS | 30.0% | |
| !! | GTTGAAGGAAATGTTTTTGA+TGG | + | chr3_3:87532874-87532893 | Msa0481440:CDS | 30.0% |
| ATAATTGCTCCAATCTCATT+AGG | + | chr3_3:87532905-87532924 | Msa0481440:CDS | 30.0% | |
| AGCACTAACAATTACACAAA+AGG | - | chr3_3:87533024-87533043 | None:intergenic | 30.0% | |
| TCAAGCTCAAATCTATTATC+GGG | + | chr3_3:87533084-87533103 | Msa0481440:intron | 30.0% | |
| ! | AGGTCTTATCTCATCAAATA+TGG | - | chr3_3:87533169-87533188 | None:intergenic | 30.0% |
| ! | GAAAAGTAATTTTGTAGGAG+TGG | + | chr3_3:87533307-87533326 | Msa0481440:intron | 30.0% |
| TTAATTGTCTATTCATCAGG+AGG | - | chr3_3:87533583-87533602 | None:intergenic | 30.0% | |
| !! | GTTGATTTTAGAAACTATCC+TGG | + | chr3_3:87534018-87534037 | Msa0481440:intron | 30.0% |
| !!! | CTTATTTTTATAAGCTCTCC+AGG | - | chr3_3:87534039-87534058 | None:intergenic | 30.0% |
| AAAAAACTTGTACTAATGGC+AGG | + | chr3_3:87534223-87534242 | Msa0481440:intron | 30.0% | |
| ! | GGTTCATTTTCAACAATTTG+TGG | - | chr3_3:87534361-87534380 | None:intergenic | 30.0% |
| AGAAACATGGGAAATGATAA+TGG | + | chr3_3:87534412-87534431 | Msa0481440:CDS | 30.0% | |
| !!! | CCCTTATTAGTAGCATTTTT+TGG | - | chr3_3:87534508-87534527 | None:intergenic | 30.0% |
| AAAAGGCCAATTGGTTAAAA+TGG | - | chr3_3:87534596-87534615 | None:intergenic | 30.0% | |
| AATCTTTACAAAAGGCCAAT+TGG | - | chr3_3:87534605-87534624 | None:intergenic | 30.0% | |
| TGGATCAAAATTGTGAAATC+GGG | - | chr3_3:87534777-87534796 | None:intergenic | 30.0% | |
| !! | TTGAGAAAAAATTCTGGCTT+TGG | - | chr3_3:87534797-87534816 | None:intergenic | 30.0% |
| CTCAAAAAGTTGTGATTCTT+AGG | + | chr3_3:87534812-87534831 | Msa0481440:intron | 30.0% | |
| CCATATTGTTTACCCAAAAT+TGG | - | chr3_3:87534940-87534959 | None:intergenic | 30.0% | |
| !! | CCAATTTTGGGTAAACAATA+TGG | + | chr3_3:87534937-87534956 | Msa0481440:intron | 30.0% |
| TTTGGGTAAACAATATGGAT+TGG | + | chr3_3:87534942-87534961 | Msa0481440:intron | 30.0% | |
| TTGGGTAAACAATATGGATT+GGG | + | chr3_3:87534943-87534962 | Msa0481440:intron | 30.0% | |
| ! | TTCACACATTGTCGTAATTT+TGG | - | chr3_3:87534970-87534989 | None:intergenic | 30.0% |
| ATTACGACAATGTGTGAAAT+TGG | + | chr3_3:87534972-87534991 | Msa0481440:intron | 30.0% | |
| TTACGACAATGTGTGAAATT+GGG | + | chr3_3:87534973-87534992 | Msa0481440:intron | 30.0% | |
| ! | GATTTTGGATACCAAAAACT+TGG | + | chr3_3:87535128-87535147 | Msa0481440:CDS | 30.0% |
| CATTGTCTCCAAAACAATTC+CGG | + | chr3_3:87532550-87532569 | Msa0481440:CDS | 35.0% | |
| AACCTATGTTTGTGTCTACA+AGG | - | chr3_3:87532618-87532637 | None:intergenic | 35.0% | |
| TCCATTTCTGAACTTGTAGA+GGG | - | chr3_3:87532697-87532716 | None:intergenic | 35.0% | |
| TTCCATTTCTGAACTTGTAG+AGG | - | chr3_3:87532698-87532717 | None:intergenic | 35.0% | |
| CACTGACAAAGATTCAGAAT+TGG | - | chr3_3:87532731-87532750 | None:intergenic | 35.0% | |
| GTCAGTGAAACAAGAAGAAA+AGG | + | chr3_3:87532744-87532763 | Msa0481440:CDS | 35.0% | |
| GGATTTCCAAATGGTTCTTT+AGG | + | chr3_3:87532850-87532869 | Msa0481440:CDS | 35.0% | |
| TCAACACCTAAAGAACCATT+TGG | - | chr3_3:87532859-87532878 | None:intergenic | 35.0% | |
| !! | AATGGTTCTTTAGGTGTTGA+AGG | + | chr3_3:87532859-87532878 | Msa0481440:CDS | 35.0% |
| ! | ACTCTTTTGCCTAATGAGAT+TGG | - | chr3_3:87532917-87532936 | None:intergenic | 35.0% |
| TAATTGGAGAAAAACTCAGC+AGG | - | chr3_3:87532943-87532962 | None:intergenic | 35.0% | |
| !! | TCCAATTATTCGGTTGATAG+TGG | + | chr3_3:87532955-87532974 | Msa0481440:CDS | 35.0% |
| ACCACTATCAACCGAATAAT+TGG | - | chr3_3:87532959-87532978 | None:intergenic | 35.0% | |
| !! | ACACTCCAAGATGTTAGTTT+TGG | + | chr3_3:87533118-87533137 | Msa0481440:intron | 35.0% |
| !!! | CACTCCAAGATGTTAGTTTT+GGG | + | chr3_3:87533119-87533138 | Msa0481440:intron | 35.0% |
| ! | AGGTCTTTTCTTTTACGGTT+AGG | - | chr3_3:87533189-87533208 | None:intergenic | 35.0% |
| ! | GAAAAGACCTGATTTTGTAG+CGG | + | chr3_3:87533199-87533218 | Msa0481440:intron | 35.0% |
| ! | TGGTTGGTCAATATTGATCA+TGG | - | chr3_3:87533371-87533390 | None:intergenic | 35.0% |
| ! | TTGCTTGCTAGTTGTTAACT+AGG | + | chr3_3:87533395-87533414 | Msa0481440:intron | 35.0% |
| AATAGTCAACTCTCTTAGCA+AGG | - | chr3_3:87533529-87533548 | None:intergenic | 35.0% | |
| TATCTTGGACATTATTAGGC+TGG | + | chr3_3:87533604-87533623 | Msa0481440:intron | 35.0% | |
| GAAGAGAAGAGGGTAAAAAT+GGG | + | chr3_3:87533626-87533645 | Msa0481440:intron | 35.0% | |
| GAGGGTAAAAATGGGATATT+AGG | + | chr3_3:87533634-87533653 | Msa0481440:intron | 35.0% | |
| ! | TGTTTTCTTCAAGAGAAGCT+TGG | + | chr3_3:87533841-87533860 | Msa0481440:intron | 35.0% |
| ! | GTTTTCTTCAAGAGAAGCTT+GGG | + | chr3_3:87533842-87533861 | Msa0481440:intron | 35.0% |
| ! | GTTTTCCACTTCAAATGCTT+TGG | + | chr3_3:87534537-87534556 | Msa0481440:CDS | 35.0% |
| ! | ACTTTCCAAAGCATTTGAAG+TGG | - | chr3_3:87534545-87534564 | None:intergenic | 35.0% |
| !! | TTCAAATGCTTTGGAAAGTC+AGG | + | chr3_3:87534546-87534565 | Msa0481440:CDS | 35.0% |
| TTTAATCGTCTCTTTGTGAG+AGG | - | chr3_3:87534663-87534682 | None:intergenic | 35.0% | |
| !!! | GAGGACGAAAATCTTGTTTT+AGG | - | chr3_3:87534723-87534742 | None:intergenic | 35.0% |
| GCAAAATCCGGATTTCAAAT+GGG | - | chr3_3:87534745-87534764 | None:intergenic | 35.0% | |
| ATCAAAATTGTGAAATCGGG+GGG | - | chr3_3:87534774-87534793 | None:intergenic | 35.0% | |
| GATCAAAATTGTGAAATCGG+GGG | - | chr3_3:87534775-87534794 | None:intergenic | 35.0% | |
| GGATCAAAATTGTGAAATCG+GGG | - | chr3_3:87534776-87534795 | None:intergenic | 35.0% | |
| TCTCAAAAAACGGCGATATT+TGG | - | chr3_3:87534908-87534927 | None:intergenic | 35.0% | |
| GCAACCTTTGTCTCAAAAAA+CGG | - | chr3_3:87534918-87534937 | None:intergenic | 35.0% | |
| ! | AGACAAAGGTTGCCAATTTT+GGG | + | chr3_3:87534925-87534944 | Msa0481440:intron | 35.0% |
| TACGACAATGTGTGAAATTG+GGG | + | chr3_3:87534974-87534993 | Msa0481440:intron | 35.0% | |
| AGGTACAATGCTACAAACAT+TGG | - | chr3_3:87535059-87535078 | None:intergenic | 35.0% | |
| ! | GAGAAGTTTTTACACCTTCA+AGG | + | chr3_3:87535203-87535222 | Msa0481440:CDS | 35.0% |
| ! | CTTTTGGCACGAATTTTACA+TGG | - | chr3_3:87535236-87535255 | None:intergenic | 35.0% |
| TGTAAAATTCGTGCCAAAAG+AGG | + | chr3_3:87535236-87535255 | Msa0481440:CDS | 35.0% | |
| CAAGCTTTCAACTACTCTGA+AGG | + | chr3_3:87532469-87532488 | Msa0481440:CDS | 40.0% | |
| AAAACAATTCCGGCTTAACG+CGG | + | chr3_3:87532560-87532579 | Msa0481440:CDS | 40.0% | |
| ! | AGCCTTGTAGACACAAACAT+AGG | + | chr3_3:87532613-87532632 | Msa0481440:CDS | 40.0% |
| TCCCTCTACAAGTTCAGAAA+TGG | + | chr3_3:87532693-87532712 | Msa0481440:CDS | 40.0% | |
| !! | GAAAAGGACCCTTTTTCACA+TGG | + | chr3_3:87532760-87532779 | Msa0481440:CDS | 40.0% |
| AAATCTATTATCGGGCCACT+CGG | + | chr3_3:87533092-87533111 | Msa0481440:intron | 40.0% | |
| TACGCCCAAAACTAACATCT+TGG | - | chr3_3:87533126-87533145 | None:intergenic | 40.0% | |
| !!! | GATGTTAGTTTTGGGCGTAA+TGG | + | chr3_3:87533127-87533146 | Msa0481440:intron | 40.0% |
| TAATCCACCGCTACAAAATC+AGG | - | chr3_3:87533209-87533228 | None:intergenic | 40.0% | |
| !! | TGATTTTGTAGCGGTGGATT+AGG | + | chr3_3:87533208-87533227 | Msa0481440:intron | 40.0% |
| AACAACTAGCAAGCAAGCTT+TGG | - | chr3_3:87533391-87533410 | None:intergenic | 40.0% | |
| TTATTAGGCTGGAAGAGAAG+AGG | + | chr3_3:87533615-87533634 | Msa0481440:intron | 40.0% | |
| TATTAGGCTGGAAGAGAAGA+GGG | + | chr3_3:87533616-87533635 | Msa0481440:intron | 40.0% | |
| GGAAGAGAAGAGGGTAAAAA+TGG | + | chr3_3:87533625-87533644 | Msa0481440:intron | 40.0% | |
| GGAGAGAATCTGTGAAAAGA+AGG | + | chr3_3:87533655-87533674 | Msa0481440:intron | 40.0% | |
| TCTTGAGTCCTAACTCCTAA+GGG | + | chr3_3:87533807-87533826 | Msa0481440:intron | 40.0% | |
| ! | ATCTTTTGCCCTTAGGAGTT+AGG | - | chr3_3:87533818-87533837 | None:intergenic | 40.0% |
| ! | AACAGAGATCTTTTGCCCTT+AGG | - | chr3_3:87533825-87533844 | None:intergenic | 40.0% |
| ! | AGGTTTTGCACCATTAAGAG+AGG | + | chr3_3:87534243-87534262 | Msa0481440:intron | 40.0% |
| TTTGCACCATTAAGAGAGGT+AGG | + | chr3_3:87534247-87534266 | Msa0481440:intron | 40.0% | |
| ACACTTCCTACCTCTCTTAA+TGG | - | chr3_3:87534256-87534275 | None:intergenic | 40.0% | |
| ! | AGAGAGGTAGGAAGTGTAAA+TGG | + | chr3_3:87534259-87534278 | Msa0481440:intron | 40.0% |
| CAAGCTACTACATCATCTAG+TGG | + | chr3_3:87534283-87534302 | Msa0481440:CDS | 40.0% | |
| ATCTTGATAGAGCAAGAGGA+TGG | - | chr3_3:87534337-87534356 | None:intergenic | 40.0% | |
| ! | CAATTTGCTTGAAGAGCTTC+AGG | - | chr3_3:87534382-87534401 | None:intergenic | 40.0% |
| TAGCTTCACCAATGACTACT+GGG | + | chr3_3:87534456-87534475 | Msa0481440:CDS | 40.0% | |
| AGAACTATCCCAGTAGTCAT+TGG | - | chr3_3:87534467-87534486 | None:intergenic | 40.0% | |
| TACTTAGATACGCCTAAGCA+TGG | + | chr3_3:87534626-87534645 | Msa0481440:intron | 40.0% | |
| GAACAAGAAGAACCATGCTT+AGG | - | chr3_3:87534641-87534660 | None:intergenic | 40.0% | |
| AAATCCGGATTTCAAATGGG+AGG | - | chr3_3:87534742-87534761 | None:intergenic | 40.0% | |
| GGCAAAATCCGGATTTCAAA+TGG | - | chr3_3:87534746-87534765 | None:intergenic | 40.0% | |
| TCAAAATTGTGAAATCGGGG+GGG | - | chr3_3:87534773-87534792 | None:intergenic | 40.0% | |
| ! | CGGGCAAAAAGACAACTTTT+AGG | - | chr3_3:87534838-87534857 | None:intergenic | 40.0% |
| !!! | ATCGCCGTTTTTTGAGACAA+AGG | + | chr3_3:87534911-87534930 | Msa0481440:intron | 40.0% |
| ! | GAGACAAAGGTTGCCAATTT+TGG | + | chr3_3:87534924-87534943 | Msa0481440:intron | 40.0% |
| ACGACAATGTGTGAAATTGG+GGG | + | chr3_3:87534975-87534994 | Msa0481440:intron | 40.0% | |
| ! | TGTTACCAGGGTGTAGATTT+TGG | + | chr3_3:87535113-87535132 | Msa0481440:intron | 40.0% |
| ! | GATGGGTCAAACCAAGTTTT+TGG | - | chr3_3:87535142-87535161 | None:intergenic | 40.0% |
| AGGTGTAAAAACTTCTCCGT+AGG | - | chr3_3:87535200-87535219 | None:intergenic | 40.0% | |
| TACATGGAACAGATCCTTGA+AGG | - | chr3_3:87535220-87535239 | None:intergenic | 40.0% | |
| ! | GCTTTCAACTACTCTGAAGG+TGG | + | chr3_3:87532472-87532491 | Msa0481440:CDS | 45.0% |
| ! | GCGTTAAGCCGGAATTGTTT+TGG | - | chr3_3:87532561-87532580 | None:intergenic | 45.0% |
| AGGCTTGTAAGTAACGAGCT+TGG | - | chr3_3:87532598-87532617 | None:intergenic | 45.0% | |
| ! | AAGACCTGATTTTGTAGCGG+TGG | + | chr3_3:87533202-87533221 | Msa0481440:intron | 45.0% |
| ! | ACTAGCAAGCAAGCTTTGGT+TGG | - | chr3_3:87533387-87533406 | None:intergenic | 45.0% |
| GCAATTGGGAGTGACTTGAA+TGG | + | chr3_3:87533476-87533495 | Msa0481440:intron | 45.0% | |
| GTCTTGAGTCCTAACTCCTA+AGG | + | chr3_3:87533806-87533825 | Msa0481440:intron | 45.0% | |
| TTCTTCAAGAGAAGCTTGGG+AGG | + | chr3_3:87533845-87533864 | Msa0481440:intron | 45.0% | |
| TCTTCAAGAGAAGCTTGGGA+GGG | + | chr3_3:87533846-87533865 | Msa0481440:intron | 45.0% | |
| TGGCATCTTGATAGAGCAAG+AGG | - | chr3_3:87534341-87534360 | None:intergenic | 45.0% | |
| CAGTAGTCATTGGTGAAGCT+AGG | - | chr3_3:87534457-87534476 | None:intergenic | 45.0% | |
| CTAGCTTCACCAATGACTAC+TGG | + | chr3_3:87534455-87534474 | Msa0481440:CDS | 45.0% | |
| ! | TCGTCCTCCCATTTGAAATC+CGG | + | chr3_3:87534735-87534754 | Msa0481440:intron | 45.0% |
| AAAATTGTGAAATCGGGGGG+GGG | - | chr3_3:87534771-87534790 | None:intergenic | 45.0% | |
| CAAAATTGTGAAATCGGGGG+GGG | - | chr3_3:87534772-87534791 | None:intergenic | 45.0% | |
| GGTATCCAAAATCTACACCC+TGG | - | chr3_3:87535121-87535140 | None:intergenic | 45.0% | |
| GCTAGGCAGACTCAAATGAT+GGG | - | chr3_3:87535159-87535178 | None:intergenic | 45.0% | |
| AGCTAGGCAGACTCAAATGA+TGG | - | chr3_3:87535160-87535179 | None:intergenic | 45.0% | |
| TTCTTCCAAGATGGCTCCTA+CGG | + | chr3_3:87535181-87535200 | Msa0481440:CDS | 45.0% | |
| TGAACGATACCGCGTTAAGC+CGG | - | chr3_3:87532572-87532591 | None:intergenic | 50.0% | |
| ATCTTGGAGTGTGATCCGAG+TGG | - | chr3_3:87533110-87533129 | None:intergenic | 50.0% | |
| AGCTTGGGAGGGTCTTTGAT+TGG | + | chr3_3:87533857-87533876 | Msa0481440:intron | 50.0% | |
| AAATTGTGAAATCGGGGGGG+GGG | - | chr3_3:87534770-87534789 | None:intergenic | 50.0% | |
| ! | GCCTAGCTCTTCTTCCAAGA+TGG | + | chr3_3:87535172-87535191 | Msa0481440:CDS | 50.0% |
| GCCATCTTGGAAGAAGAGCT+AGG | - | chr3_3:87535176-87535195 | None:intergenic | 50.0% | |
| ! | GTGAGTGGCAAAGCCTCTTT+TGG | - | chr3_3:87535252-87535271 | None:intergenic | 50.0% |
| !! | TGCAATGCTTCTAGGGTGAG+TGG | - | chr3_3:87535267-87535286 | None:intergenic | 50.0% |
| !! | ACCCTAGAAGCATTGCAGAG+AGG | + | chr3_3:87535270-87535289 | Msa0481440:CDS | 50.0% |
| CCCTCTCTGCAATGCTTCTA+GGG | - | chr3_3:87535274-87535293 | None:intergenic | 50.0% | |
| !! | CCCTAGAAGCATTGCAGAGA+GGG | + | chr3_3:87535271-87535290 | Msa0481440:CDS | 50.0% |
| ACCCTCTCTGCAATGCTTCT+AGG | - | chr3_3:87535275-87535294 | None:intergenic | 50.0% | |
| AATTGTGAAATCGGGGGGGG+GGG | - | chr3_3:87534769-87534788 | None:intergenic | 55.0% | |
| CTTCTCCGTAGGAGCCATCT+TGG | - | chr3_3:87535189-87535208 | None:intergenic | 55.0% | |
| ATTGTGAAATCGGGGGGGGG+GGG | - | chr3_3:87534768-87534787 | None:intergenic | 60.0% | |
| TTGTGAAATCGGGGGGGGGG+GGG | - | chr3_3:87534767-87534786 | None:intergenic | 65.0% | |
| GGGGGGGGGGGGGCAAAATC+CGG | - | chr3_3:87534757-87534776 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 87532451 | 87535304 | 87532451 | ID=Msa0481440;Name=Msa0481440 |
| chr3_3 | mRNA | 87532451 | 87535304 | 87532451 | ID=Msa0481440-mRNA-1;Parent=Msa0481440;Name=Msa0481440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0|1|1|1|3|0|335 |
| chr3_3 | exon | 87532451 | 87532976 | 87532451 | ID=Msa0481440-mRNA-1:exon:25403;Parent=Msa0481440-mRNA-1 |
| chr3_3 | exon | 87534269 | 87534567 | 87534269 | ID=Msa0481440-mRNA-1:exon:25404;Parent=Msa0481440-mRNA-1 |
| chr3_3 | exon | 87535122 | 87535304 | 87535122 | ID=Msa0481440-mRNA-1:exon:25405;Parent=Msa0481440-mRNA-1 |
| chr3_3 | CDS | 87532451 | 87532976 | 87532451 | ID=Msa0481440-mRNA-1:cds;Parent=Msa0481440-mRNA-1 |
| chr3_3 | CDS | 87534269 | 87534567 | 87534269 | ID=Msa0481440-mRNA-1:cds;Parent=Msa0481440-mRNA-1 |
| chr3_3 | CDS | 87535122 | 87535304 | 87535122 | ID=Msa0481440-mRNA-1:cds;Parent=Msa0481440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
