AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1320430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320430 MtrunA17_Chr8g0351881 90.828 338 24 4 1 335 1 334 0.0 593
Msa1320430 MtrunA17_Chr3g0087771 48.493 365 107 15 18 335 10 340 5.63e-85 262
Msa1320430 MtrunA17_Chr1g0174271 31.722 331 181 10 28 335 8 316 3.42e-24 101
Msa1320430 MtrunA17_Chr2g0329041 30.812 357 180 13 32 335 8 350 3.50e-22 96.3
Msa1320430 MtrunA17_Chr4g0032951 34.314 204 99 10 156 335 181 373 4.80e-17 81.6
Msa1320430 MtrunA17_Chr7g0258181 67.347 49 16 0 287 335 213 261 6.43e-15 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320430 AT2G42280.3 31.307 329 147 14 40 335 15 297 1.54e-22 97.1
Msa1320430 AT2G42280.1 31.307 329 147 14 40 335 15 297 1.83e-22 97.1
Msa1320430 AT2G42280.2 31.402 328 146 14 40 334 15 296 3.29e-22 95.1
Msa1320430 AT1G05805.1 30.556 324 162 13 36 335 17 301 2.04e-13 70.9
Msa1320430 AT1G51140.1 28.659 328 190 13 32 335 15 322 3.42e-13 70.1
Msa1320430 AT2G43140.2 33.168 202 97 6 148 335 72 249 2.27e-11 64.3

Find 57 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGAAATGGATTCAAAATT+TGG 0.143373 8_4:-24882979 Msa1320430:CDS
TGTTACCAGGGTGTAGATTT+TGG 0.188539 8_4:-24880019 Msa1320430:intron
ACCCTCTCTGCAATGCTTCT+AGG 0.208569 8_4:+24879860 None:intergenic
TATTGTATTCCATGTGAAAA+AGG 0.235273 8_4:+24882715 None:intergenic
ACCACTATCAACCGAATAAT+TGG 0.239497 8_4:+24882528 None:intergenic
GGATTTCCAAATGGTTCTTT+AGG 0.260650 8_4:-24882634 Msa1320430:CDS
CAATACAATGATTACTCTTA+TGG 0.263413 8_4:-24882697 Msa1320430:CDS
CAATTTGCTTGAAGAGCTTC+AGG 0.284637 8_4:+24880757 None:intergenic
AGAGAGGTAGGAAGTGTAAA+TGG 0.308528 8_4:-24880877 Msa1320430:intron
GCGTTAAGCCGGAATTGTTT+TGG 0.328492 8_4:+24882929 None:intergenic
GTGAGTGGCAAAGCCTCTTT+TGG 0.336425 8_4:+24879883 None:intergenic
TCCAATTATTCGGTTGATAG+TGG 0.369287 8_4:-24882529 Msa1320430:intron
CCCTCTCTGCAATGCTTCTA+GGG 0.373214 8_4:+24879861 None:intergenic
ACTACATCATCTAGTGGATA+TGG 0.382484 8_4:-24880847 Msa1320430:CDS
CTTCTCCGTAGTAGCCATCT+TGG 0.383312 8_4:+24879946 None:intergenic
CATTGTCTCCAAAACAATTC+CGG 0.388810 8_4:-24882937 Msa1320430:CDS
TCCCTCTACAAGTTCAGAAA+TGG 0.398455 8_4:-24882791 Msa1320430:CDS
CACTGACAAAGATTCAGAAT+TGG 0.412608 8_4:+24882756 None:intergenic
AGAAACATGGGAAATGATAA+TGG 0.418925 8_4:-24880724 Msa1320430:CDS
TTCAAATGCTTTGGAAAGTC+AGG 0.424743 8_4:-24880590 Msa1320430:intron
TCAACACCTAAAGAACCATT+TGG 0.425199 8_4:+24882628 None:intergenic
AATGGTTCTTTAGGTGTTGA+AGG 0.428511 8_4:-24882625 Msa1320430:CDS
GTCAGTGAAACAAGAAGAAA+AGG 0.437216 8_4:-24882740 Msa1320430:CDS
TTCAATGAAGAACACAGAAA+TGG 0.438657 8_4:-24882992 Msa1320430:CDS
CCCTAGAAGCATTGCAGAGA+GGG 0.444514 8_4:-24879861 Msa1320430:CDS
TGTAAAATTCGTGCCAAAAG+AGG 0.450273 8_4:-24879896 Msa1320430:CDS
ATAATTGCTCCAATCTCATT+AGG 0.465778 8_4:-24882579 Msa1320430:CDS
TACATGGAACAGATCCTTGA+AGG 0.468658 8_4:+24879915 None:intergenic
CTAGCTTCACCAATGACTAC+TGG 0.472078 8_4:-24880681 Msa1320430:CDS
AACCTATGTTTGTGTCTACA+AGG 0.486036 8_4:+24882872 None:intergenic
AGCTAGGCAGACTCAAATGA+TGG 0.490931 8_4:+24879975 None:intergenic
CATAATCAAGGATTTCCAAA+TGG 0.493678 8_4:-24882643 Msa1320430:CDS
AGAACTATCCCAGTAGTCAT+TGG 0.496050 8_4:+24880672 None:intergenic
TTCTTCCAAGATGGCTACTA+CGG 0.504065 8_4:-24879951 Msa1320430:CDS
TATCAAACTCAACATAATCA+AGG 0.521491 8_4:-24882655 Msa1320430:CDS
TTCCATTTCTGAACTTGTAG+AGG 0.527988 8_4:+24882789 None:intergenic
GCCTAGCTCTTCTTCCAAGA+TGG 0.534945 8_4:-24879960 Msa1320430:CDS
ACTTTCCAAAGCATTTGAAG+TGG 0.539932 8_4:+24880594 None:intergenic
TGAACGATACCGCGTTAAGC+CGG 0.550117 8_4:+24882918 None:intergenic
TGTATTAAAAGTAGAAACAT+GGG 0.555635 8_4:-24880736 Msa1320430:CDS
TCCATTTCTGAACTTGTAGA+GGG 0.558247 8_4:+24882790 None:intergenic
AGGCTTGTAAGTAATGAGCT+TGG 0.565645 8_4:+24882892 None:intergenic
TAGCTTCACCAATGACTACT+GGG 0.565945 8_4:-24880680 Msa1320430:CDS
AGATTCAGAATTGGTAAACA+TGG 0.566542 8_4:+24882765 None:intergenic
TTGTATTAAAAGTAGAAACA+TGG 0.569384 8_4:-24880737 Msa1320430:CDS
CAGTAGTCATTGGTGAAGCT+AGG 0.577944 8_4:+24880682 None:intergenic
TGGCATCTTGATAGAGCAAG+AGG 0.582833 8_4:+24880798 None:intergenic
CAAGCTTTCAACTACTCTGA+AGG 0.588993 8_4:-24883018 Msa1320430:CDS
TGCAATGCTTCTAGGGTGAG+TGG 0.590036 8_4:+24879868 None:intergenic
CAAGCTACTACATCATCTAG+TGG 0.611174 8_4:-24880853 Msa1320430:CDS
AAAACAATTCCGGCTTAACG+CGG 0.617284 8_4:-24882927 Msa1320430:CDS
GCCATCTTGGAAGAAGAGCT+AGG 0.619465 8_4:+24879959 None:intergenic
ATCTTGATAGAGCAAGAGGA+TGG 0.627820 8_4:+24880802 None:intergenic
GCTAGGCAGACTCAAATGAT+GGG 0.628666 8_4:+24879976 None:intergenic
GCTTTCAACTACTCTGAAGG+TGG 0.629565 8_4:-24883015 Msa1320430:CDS
AGCCTTGTAGACACAAACAT+AGG 0.644549 8_4:-24882874 Msa1320430:CDS
ACCCTAGAAGCATTGCAGAG+AGG 0.691130 8_4:-24879862 Msa1320430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAGAAAAAAATAGATTT+TGG - chr8_4:24881070-24881089 Msa1320430:intron 10.0%
!!! TATGTTTTTTTTATCTTACT+TGG - chr8_4:24880380-24880399 Msa1320430:intron 15.0%
!!! AAATGATTTTTTTAGCAAAA+TGG - chr8_4:24881130-24881149 Msa1320430:intron 15.0%
!!! ATACTAAAATTTAGTTTAGA+AGG - chr8_4:24881448-24881467 Msa1320430:intron 15.0%
!!! AAATATATGCATATTTTTCT+AGG - chr8_4:24881485-24881504 Msa1320430:intron 15.0%
!!! AGTAAAATATACTTTTTCAA+TGG + chr8_4:24881940-24881959 None:intergenic 15.0%
!!! AAAAGTATATTTTACTTTGT+AGG - chr8_4:24881944-24881963 Msa1320430:intron 15.0%
!!! AAAGTATATTTTACTTTGTA+GGG - chr8_4:24881945-24881964 Msa1320430:intron 15.0%
!! CAAAATGAGATTAAAAATTT+GGG + chr8_4:24882763-24882782 None:intergenic 15.0%
!!! TTACTTGGTAATATCTATTA+TGG - chr8_4:24880395-24880414 Msa1320430:intron 20.0%
!!! ATTTCTTTTTTGATAATGCT+TGG - chr8_4:24880461-24880480 Msa1320430:intron 20.0%
!!! TCTAAGAAAAGTAATTTTGT+AGG - chr8_4:24880704-24880723 Msa1320430:CDS 20.0%
!!! ATACCTGTTCTTATTTTTTA+TGG - chr8_4:24880735-24880754 Msa1320430:CDS 20.0%
!! TTTCCATAAAAAATAAGAAC+AGG + chr8_4:24880741-24880760 None:intergenic 20.0%
!! TGATAATATAGTAAAGCAAT+TGG - chr8_4:24880863-24880882 Msa1320430:CDS 20.0%
!! GATAATATAGTAAAGCAATT+GGG - chr8_4:24880864-24880883 Msa1320430:CDS 20.0%
!!! TCTATTTTTTTCTTAATGCA+AGG + chr8_4:24881067-24881086 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG - chr8_4:24881103-24881122 Msa1320430:intron 20.0%
!! AAAAAAAATCCAAAACAAAC+AGG - chr8_4:24881228-24881247 Msa1320430:intron 20.0%
!! TAATTAATTGTCTATTCATC+AGG + chr8_4:24881336-24881355 None:intergenic 20.0%
!! GAATAGACAATTAATTATCT+TGG - chr8_4:24881339-24881358 Msa1320430:intron 20.0%
!! TAATTATCTTGGACATTATT+AGG - chr8_4:24881350-24881369 Msa1320430:intron 20.0%
!! TCTAAAAAAACTTGTACTAA+TGG - chr8_4:24881969-24881988 Msa1320430:intron 20.0%
!! TTGTATTAAAAGTAGAAACA+TGG - chr8_4:24882149-24882168 Msa1320430:intron 20.0%
!! TGTATTAAAAGTAGAAACAT+GGG - chr8_4:24882150-24882169 Msa1320430:intron 20.0%
!! CTAAGTATAATCTTTACAAA+AGG + chr8_4:24882363-24882382 None:intergenic 20.0%
!!! AACTTTTTGAGAAAAAATTC+TGG + chr8_4:24882555-24882574 None:intergenic 20.0%
!!! AGATTAAAAATTTGGGTTTT+TGG + chr8_4:24882756-24882775 None:intergenic 20.0%
!! GCAAAATGAGATTAAAAATT+TGG + chr8_4:24882764-24882783 None:intergenic 20.0%
!!! TTTTTTTAGTAGAGAATAGT+AGG - chr8_4:24882786-24882805 Msa1320430:CDS 20.0%
!! ACAGAAATGGATTCAAAATT+TGG - chr8_4:24879907-24879926 Msa1320430:CDS 25.0%
! TATTGTATTCCATGTGAAAA+AGG + chr8_4:24880174-24880193 None:intergenic 25.0%
! CAATACAATGATTACTCTTA+TGG - chr8_4:24880189-24880208 Msa1320430:intron 25.0%
! TATCAAACTCAACATAATCA+AGG - chr8_4:24880231-24880250 Msa1320430:intron 25.0%
!! TGAGTTTTTCTCCAATTATT+CGG - chr8_4:24880347-24880366 Msa1320430:intron 25.0%
! ATCAAGCTCAAATCTATTAT+TGG - chr8_4:24880485-24880504 Msa1320430:intron 25.0%
! TCAAGCTCAAATCTATTATT+GGG - chr8_4:24880486-24880505 Msa1320430:intron 25.0%
!! AAATCAGGTCTTTTCTTTTA+CGG + chr8_4:24880596-24880615 None:intergenic 25.0%
! GGATCAACTAAAAATTTAAG+AGG - chr8_4:24880631-24880650 Msa1320430:CDS 25.0%
! CAATAATACTGCACAAAATA+GGG + chr8_4:24880845-24880864 None:intergenic 25.0%
! TCAATAATACTGCACAAAAT+AGG + chr8_4:24880846-24880865 None:intergenic 25.0%
! TATATTTACTTAACACACGA+TGG - chr8_4:24881534-24881553 Msa1320430:intron 25.0%
! AACAAGACATGTATTGTTAA+GGG + chr8_4:24881658-24881677 None:intergenic 25.0%
! AAACAAGACATGTATTGTTA+AGG + chr8_4:24881659-24881678 None:intergenic 25.0%
!! TTAACAATACATGTCTTGTT+TGG - chr8_4:24881658-24881677 Msa1320430:intron 25.0%
! GTAAAAGTAGTTTATGCATA+AGG + chr8_4:24881703-24881722 None:intergenic 25.0%
!!! GTTGATTTTATAAACTATCC+TGG - chr8_4:24881768-24881787 Msa1320430:intron 25.0%
! TCCAAAAAATGCTACTAATA+AGG - chr8_4:24882254-24882273 Msa1320430:intron 25.0%
! CCAAAAAATGCTACTAATAA+GGG - chr8_4:24882255-24882274 Msa1320430:intron 25.0%
!!! GAATTTCCATTTTAACCAAT+TGG - chr8_4:24882337-24882356 Msa1320430:intron 25.0%
!!! CTTGTTTTAGGTAAAATTGT+GGG + chr8_4:24882461-24882480 None:intergenic 25.0%
!!! TCTTGTTTTAGGTAAAATTG+TGG + chr8_4:24882462-24882481 None:intergenic 25.0%
! TCTCTTTAGATTCAAAATTC+GGG + chr8_4:24882611-24882630 None:intergenic 25.0%
! CTCTCTTTAGATTCAAAATT+CGG + chr8_4:24882612-24882631 None:intergenic 25.0%
! ACAAAAAATTATCACTTTCG+AGG - chr8_4:24882635-24882654 Msa1320430:CDS 25.0%
!! CATTGTACCTTAAACTTTTA+TGG - chr8_4:24882823-24882842 Msa1320430:CDS 25.0%
! TCAACAACCATAAAAGTTTA+AGG + chr8_4:24882833-24882852 None:intergenic 25.0%
! TTGTGAAAATTTATGTTACC+AGG - chr8_4:24882854-24882873 Msa1320430:CDS 25.0%
! TGTGAAAATTTATGTTACCA+GGG - chr8_4:24882855-24882874 Msa1320430:CDS 25.0%
TTCAATGAAGAACACAGAAA+TGG - chr8_4:24879894-24879913 Msa1320430:CDS 30.0%
AGATTCAGAATTGGTAAACA+TGG + chr8_4:24880124-24880143 None:intergenic 30.0%
CATAATCAAGGATTTCCAAA+TGG - chr8_4:24880243-24880262 Msa1320430:intron 30.0%
!! GTTGAAGGAAATGTTTTTGA+TGG - chr8_4:24880276-24880295 Msa1320430:intron 30.0%
ATAATTGCTCCAATCTCATT+AGG - chr8_4:24880307-24880326 Msa1320430:intron 30.0%
AGCACTAACAATTACACAAA+AGG + chr8_4:24880426-24880445 None:intergenic 30.0%
! AGGTCTTATCTCATCAAATA+TGG + chr8_4:24880571-24880590 None:intergenic 30.0%
! GAAAAGTAATTTTGTAGGAG+TGG - chr8_4:24880709-24880728 Msa1320430:CDS 30.0%
AGTGACTTGAATGGAATATA+AGG - chr8_4:24880887-24880906 Msa1320430:intron 30.0%
GTGACTTGAATGGAATATAA+GGG - chr8_4:24880888-24880907 Msa1320430:intron 30.0%
TGACTTGAATGGAATATAAG+GGG - chr8_4:24880889-24880908 Msa1320430:intron 30.0%
TTAATTGTCTATTCATCAGG+AGG + chr8_4:24881333-24881352 None:intergenic 30.0%
!!! CTTATTTTTATAAGCTCTCC+AGG + chr8_4:24881789-24881808 None:intergenic 30.0%
AAAAAACTTGTACTAATGGC+AGG - chr8_4:24881973-24881992 Msa1320430:intron 30.0%
! GGTTCATTTTCAACAATTTG+TGG + chr8_4:24882111-24882130 None:intergenic 30.0%
AGAAACATGGGAAATGATAA+TGG - chr8_4:24882162-24882181 Msa1320430:intron 30.0%
!!! CCCTTATTAGTAGCATTTTT+TGG + chr8_4:24882258-24882277 None:intergenic 30.0%
AAAAGGCCAATTGGTTAAAA+TGG + chr8_4:24882346-24882365 None:intergenic 30.0%
AATCTTTACAAAAGGCCAAT+TGG + chr8_4:24882355-24882374 None:intergenic 30.0%
TCAAAATCCGGATTTCAAAT+GGG + chr8_4:24882495-24882514 None:intergenic 30.0%
ATCAAAATCCGGATTTCAAA+TGG + chr8_4:24882496-24882515 None:intergenic 30.0%
!! TTGAGAAAAAATTCTGGCTT+TGG + chr8_4:24882549-24882568 None:intergenic 30.0%
CTCAAAAAGTTGTGATTCTT+AGG - chr8_4:24882564-24882583 Msa1320430:CDS 30.0%
CCATATTGTTTACCCAAAAT+TGG + chr8_4:24882694-24882713 None:intergenic 30.0%
!! CCAATTTTGGGTAAACAATA+TGG - chr8_4:24882691-24882710 Msa1320430:CDS 30.0%
TTTGGGTAAACAATATGGAT+TGG - chr8_4:24882696-24882715 Msa1320430:CDS 30.0%
TTGGGTAAACAATATGGATT+GGG - chr8_4:24882697-24882716 Msa1320430:CDS 30.0%
! TTCACACATTGTCGTAATTT+TGG + chr8_4:24882724-24882743 None:intergenic 30.0%
ATTACGACAATGTGTGAAAT+TGG - chr8_4:24882726-24882745 Msa1320430:CDS 30.0%
TTACGACAATGTGTGAAATT+GGG - chr8_4:24882727-24882746 Msa1320430:CDS 30.0%
! GATTTTGGATACCAAAAACT+TGG - chr8_4:24882882-24882901 Msa1320430:CDS 30.0%
CATTGTCTCCAAAACAATTC+CGG - chr8_4:24879949-24879968 Msa1320430:CDS 35.0%
AACCTATGTTTGTGTCTACA+AGG + chr8_4:24880017-24880036 None:intergenic 35.0%
TCCATTTCTGAACTTGTAGA+GGG + chr8_4:24880099-24880118 None:intergenic 35.0%
TTCCATTTCTGAACTTGTAG+AGG + chr8_4:24880100-24880119 None:intergenic 35.0%
CACTGACAAAGATTCAGAAT+TGG + chr8_4:24880133-24880152 None:intergenic 35.0%
GTCAGTGAAACAAGAAGAAA+AGG - chr8_4:24880146-24880165 Msa1320430:intron 35.0%
!! GAAAAGGATCCTTTTTCACA+TGG - chr8_4:24880162-24880181 Msa1320430:intron 35.0%
GGATTTCCAAATGGTTCTTT+AGG - chr8_4:24880252-24880271 Msa1320430:intron 35.0%
TCAACACCTAAAGAACCATT+TGG + chr8_4:24880261-24880280 None:intergenic 35.0%
!! AATGGTTCTTTAGGTGTTGA+AGG - chr8_4:24880261-24880280 Msa1320430:intron 35.0%
! ACTCTTTTGCCTAATGAGAT+TGG + chr8_4:24880319-24880338 None:intergenic 35.0%
TAATTGGAGAAAAACTCAGC+AGG + chr8_4:24880345-24880364 None:intergenic 35.0%
!! TCCAATTATTCGGTTGATAG+TGG - chr8_4:24880357-24880376 Msa1320430:intron 35.0%
ACCACTATCAACCGAATAAT+TGG + chr8_4:24880361-24880380 None:intergenic 35.0%
AAATCTATTATTGGGCCACT+CGG - chr8_4:24880494-24880513 Msa1320430:intron 35.0%
!! ACACTCCAAGATGTTAGTTT+TGG - chr8_4:24880520-24880539 Msa1320430:intron 35.0%
!!! CACTCCAAGATGTTAGTTTT+GGG - chr8_4:24880521-24880540 Msa1320430:intron 35.0%
! AGGTCTTTTCTTTTACGGTT+AGG + chr8_4:24880591-24880610 None:intergenic 35.0%
! GAAAAGACCTGATTTTGTAG+CGG - chr8_4:24880601-24880620 Msa1320430:CDS 35.0%
! TGGTTGGTCAATATTGATCA+TGG + chr8_4:24880773-24880792 None:intergenic 35.0%
! TTGCTTGCTAGTTGTTAACT+AGG - chr8_4:24880797-24880816 Msa1320430:CDS 35.0%
ATTGTCAGCAAACAGATCTT+GGG + chr8_4:24881254-24881273 None:intergenic 35.0%
AATTGTCAGCAAACAGATCT+TGG + chr8_4:24881255-24881274 None:intergenic 35.0%
AATAGTCAACTCTCTTAGCA+AGG + chr8_4:24881279-24881298 None:intergenic 35.0%
TATCTTGGACATTATTAGGC+TGG - chr8_4:24881354-24881373 Msa1320430:intron 35.0%
GAAGAGAAGAGGGTAAAAAT+GGG - chr8_4:24881376-24881395 Msa1320430:intron 35.0%
GAGGGTAAAAATGGGATATT+AGG - chr8_4:24881384-24881403 Msa1320430:intron 35.0%
! TGTTTTCTTCAAGAGAAGCT+TGG - chr8_4:24881591-24881610 Msa1320430:intron 35.0%
! GTTTTCTTCAAGAGAAGCTT+GGG - chr8_4:24881592-24881611 Msa1320430:intron 35.0%
! ACTACATCATCTAGTGGATA+TGG - chr8_4:24882039-24882058 Msa1320430:intron 35.0%
! GTTTTCCACTTCAAATGCTT+TGG - chr8_4:24882287-24882306 Msa1320430:intron 35.0%
! ACTTTCCAAAGCATTTGAAG+TGG + chr8_4:24882295-24882314 None:intergenic 35.0%
!! TTCAAATGCTTTGGAAAGTC+AGG - chr8_4:24882296-24882315 Msa1320430:intron 35.0%
TTTAATCGTCTCTTTGTGAG+AGG + chr8_4:24882413-24882432 None:intergenic 35.0%
!!! GAGGACGAAAATCTTGTTTT+AGG + chr8_4:24882473-24882492 None:intergenic 35.0%
!! ATTCTGGCTTTGGATCAAAA+GGG + chr8_4:24882539-24882558 None:intergenic 35.0%
!! AATTCTGGCTTTGGATCAAA+AGG + chr8_4:24882540-24882559 None:intergenic 35.0%
! GGCAAAAAGACAACACTTTT+AGG + chr8_4:24882590-24882609 None:intergenic 35.0%
TCTCAAAAAACGGCGATATT+GGG + chr8_4:24882662-24882681 None:intergenic 35.0%
GCAACCTTTGTCTCAAAAAA+CGG + chr8_4:24882672-24882691 None:intergenic 35.0%
! AGACAAAGGTTGCCAATTTT+GGG - chr8_4:24882679-24882698 Msa1320430:CDS 35.0%
TACGACAATGTGTGAAATTG+GGG - chr8_4:24882728-24882747 Msa1320430:CDS 35.0%
AGGTACAATGCTACAAACAT+TGG + chr8_4:24882813-24882832 None:intergenic 35.0%
! GAGAAGTTTTTACACCTTCA+AGG - chr8_4:24882957-24882976 Msa1320430:CDS 35.0%
! CTTTTGGCACGAATTTTACA+TGG + chr8_4:24882990-24883009 None:intergenic 35.0%
TGTAAAATTCGTGCCAAAAG+AGG - chr8_4:24882990-24883009 Msa1320430:CDS 35.0%
CAAGCTTTCAACTACTCTGA+AGG - chr8_4:24879868-24879887 Msa1320430:CDS 40.0%
AAAACAATTCCGGCTTAACG+CGG - chr8_4:24879959-24879978 Msa1320430:CDS 40.0%
AGGCTTGTAAGTAATGAGCT+TGG + chr8_4:24879997-24880016 None:intergenic 40.0%
! AGCCTTGTAGACACAAACAT+AGG - chr8_4:24880012-24880031 Msa1320430:CDS 40.0%
TCCCTCTACAAGTTCAGAAA+TGG - chr8_4:24880095-24880114 Msa1320430:intron 40.0%
TACGCCCAAAACTAACATCT+TGG + chr8_4:24880528-24880547 None:intergenic 40.0%
!!! GATGTTAGTTTTGGGCGTAA+TGG - chr8_4:24880529-24880548 Msa1320430:intron 40.0%
TAATCCACCGCTACAAAATC+AGG + chr8_4:24880611-24880630 None:intergenic 40.0%
!! TGATTTTGTAGCGGTGGATT+AGG - chr8_4:24880610-24880629 Msa1320430:CDS 40.0%
AACAACTAGCAAGCAAGCTT+TGG + chr8_4:24880793-24880812 None:intergenic 40.0%
TTATTAGGCTGGAAGAGAAG+AGG - chr8_4:24881365-24881384 Msa1320430:intron 40.0%
TATTAGGCTGGAAGAGAAGA+GGG - chr8_4:24881366-24881385 Msa1320430:intron 40.0%
GGAAGAGAAGAGGGTAAAAA+TGG - chr8_4:24881375-24881394 Msa1320430:intron 40.0%
GGAGAGAATCTGTGAAAAGA+AGG - chr8_4:24881405-24881424 Msa1320430:intron 40.0%
TCTTGAGTCCTAACTCCTAA+GGG - chr8_4:24881557-24881576 Msa1320430:intron 40.0%
! ATCTTTTGCCCTTAGGAGTT+AGG + chr8_4:24881568-24881587 None:intergenic 40.0%
! AACAGAGATCTTTTGCCCTT+AGG + chr8_4:24881575-24881594 None:intergenic 40.0%
! AGGTTTTGCACCATTAAGAG+AGG - chr8_4:24881993-24882012 Msa1320430:intron 40.0%
TTTGCACCATTAAGAGAGGT+AGG - chr8_4:24881997-24882016 Msa1320430:intron 40.0%
ACACTTCCTACCTCTCTTAA+TGG + chr8_4:24882006-24882025 None:intergenic 40.0%
! AGAGAGGTAGGAAGTGTAAA+TGG - chr8_4:24882009-24882028 Msa1320430:intron 40.0%
CAAGCTACTACATCATCTAG+TGG - chr8_4:24882033-24882052 Msa1320430:intron 40.0%
ATCTTGATAGAGCAAGAGGA+TGG + chr8_4:24882087-24882106 None:intergenic 40.0%
! CAATTTGCTTGAAGAGCTTC+AGG + chr8_4:24882132-24882151 None:intergenic 40.0%
TAGCTTCACCAATGACTACT+GGG - chr8_4:24882206-24882225 Msa1320430:intron 40.0%
AGAACTATCCCAGTAGTCAT+TGG + chr8_4:24882217-24882236 None:intergenic 40.0%
TACTTAGATACGCCTAAGCA+TGG - chr8_4:24882376-24882395 Msa1320430:intron 40.0%
GAACAAGAAGAACCATGCTT+AGG + chr8_4:24882391-24882410 None:intergenic 40.0%
AAATCCGGATTTCAAATGGG+AGG + chr8_4:24882492-24882511 None:intergenic 40.0%
!! TTCTGGCTTTGGATCAAAAG+GGG + chr8_4:24882538-24882557 None:intergenic 40.0%
GTCTCAAAAAACGGCGATAT+TGG + chr8_4:24882663-24882682 None:intergenic 40.0%
!!! ATCGCCGTTTTTTGAGACAA+AGG - chr8_4:24882665-24882684 Msa1320430:CDS 40.0%
! GAGACAAAGGTTGCCAATTT+TGG - chr8_4:24882678-24882697 Msa1320430:CDS 40.0%
ACGACAATGTGTGAAATTGG+GGG - chr8_4:24882729-24882748 Msa1320430:CDS 40.0%
! TGTTACCAGGGTGTAGATTT+TGG - chr8_4:24882867-24882886 Msa1320430:CDS 40.0%
! GATGGGTCAAACCAAGTTTT+TGG + chr8_4:24882896-24882915 None:intergenic 40.0%
TTCTTCCAAGATGGCTACTA+CGG - chr8_4:24882935-24882954 Msa1320430:CDS 40.0%
TACATGGAACAGATCCTTGA+AGG + chr8_4:24882974-24882993 None:intergenic 40.0%
! GCTTTCAACTACTCTGAAGG+TGG - chr8_4:24879871-24879890 Msa1320430:CDS 45.0%
! GCGTTAAGCCGGAATTGTTT+TGG + chr8_4:24879960-24879979 None:intergenic 45.0%
! AAGACCTGATTTTGTAGCGG+TGG - chr8_4:24880604-24880623 Msa1320430:CDS 45.0%
! ACTAGCAAGCAAGCTTTGGT+TGG + chr8_4:24880789-24880808 None:intergenic 45.0%
GCAATTGGGAGTGACTTGAA+TGG - chr8_4:24880878-24880897 Msa1320430:intron 45.0%
! GATCTTGGGCCTGTTTGTTT+TGG + chr8_4:24881240-24881259 None:intergenic 45.0%
GTCTTGAGTCCTAACTCCTA+AGG - chr8_4:24881556-24881575 Msa1320430:intron 45.0%
TTCTTCAAGAGAAGCTTGGG+AGG - chr8_4:24881595-24881614 Msa1320430:intron 45.0%
TCTTCAAGAGAAGCTTGGGA+GGG - chr8_4:24881596-24881615 Msa1320430:intron 45.0%
TGGCATCTTGATAGAGCAAG+AGG + chr8_4:24882091-24882110 None:intergenic 45.0%
CAGTAGTCATTGGTGAAGCT+AGG + chr8_4:24882207-24882226 None:intergenic 45.0%
CTAGCTTCACCAATGACTAC+TGG - chr8_4:24882205-24882224 Msa1320430:intron 45.0%
! TCGTCCTCCCATTTGAAATC+CGG - chr8_4:24882485-24882504 Msa1320430:intron 45.0%
!! TCTGGCTTTGGATCAAAAGG+GGG + chr8_4:24882537-24882556 None:intergenic 45.0%
GGTATCCAAAATCTACACCC+TGG + chr8_4:24882875-24882894 None:intergenic 45.0%
GCTAGGCAGACTCAAATGAT+GGG + chr8_4:24882913-24882932 None:intergenic 45.0%
AGCTAGGCAGACTCAAATGA+TGG + chr8_4:24882914-24882933 None:intergenic 45.0%
TGAACGATACCGCGTTAAGC+CGG + chr8_4:24879971-24879990 None:intergenic 50.0%
ATCTTGGAGTGTGATCCGAG+TGG + chr8_4:24880512-24880531 None:intergenic 50.0%
AGCTTGGGAGGGTCTTTGAT+TGG - chr8_4:24881607-24881626 Msa1320430:intron 50.0%
!! GGGTGTGGTGGATCAAAATC+CGG + chr8_4:24882507-24882526 None:intergenic 50.0%
TTTGGATCAAAAGGGGGTGG+GGG + chr8_4:24882531-24882550 None:intergenic 50.0%
CTTTGGATCAAAAGGGGGTG+GGG + chr8_4:24882532-24882551 None:intergenic 50.0%
! GCTTTGGATCAAAAGGGGGT+GGG + chr8_4:24882533-24882552 None:intergenic 50.0%
! GCCTAGCTCTTCTTCCAAGA+TGG - chr8_4:24882926-24882945 Msa1320430:CDS 50.0%
GCCATCTTGGAAGAAGAGCT+AGG + chr8_4:24882930-24882949 None:intergenic 50.0%
CTTCTCCGTAGTAGCCATCT+TGG + chr8_4:24882943-24882962 None:intergenic 50.0%
! GTGAGTGGCAAAGCCTCTTT+TGG + chr8_4:24883006-24883025 None:intergenic 50.0%
!! TGCAATGCTTCTAGGGTGAG+TGG + chr8_4:24883021-24883040 None:intergenic 50.0%
!! ACCCTAGAAGCATTGCAGAG+AGG - chr8_4:24883024-24883043 Msa1320430:CDS 50.0%
CCCTCTCTGCAATGCTTCTA+GGG + chr8_4:24883028-24883047 None:intergenic 50.0%
!! CCCTAGAAGCATTGCAGAGA+GGG - chr8_4:24883025-24883044 Msa1320430:CDS 50.0%
ACCCTCTCTGCAATGCTTCT+AGG + chr8_4:24883029-24883048 None:intergenic 50.0%
!! GGCTTTGGATCAAAAGGGGG+TGG + chr8_4:24882534-24882553 None:intergenic 55.0%
GATCAAAAGGGGGTGGGGGT+GGG + chr8_4:24882527-24882546 None:intergenic 60.0%
GGATCAAAAGGGGGTGGGGG+TGG + chr8_4:24882528-24882547 None:intergenic 65.0%
AAAGGGGGTGGGGGTGGGTG+TGG + chr8_4:24882522-24882541 None:intergenic 70.0%
! GGGGGTGGGGGTGGGTGTGG+TGG + chr8_4:24882519-24882538 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 24879850 24883058 24879850 ID=Msa1320430;Name=Msa1320430
chr8_4 mRNA 24879850 24883058 24879850 ID=Msa1320430-mRNA-1;Parent=Msa1320430;Name=Msa1320430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0|1|1|1|3|0|336
chr8_4 exon 24882530 24883058 24882530 ID=Msa1320430-mRNA-1:exon:8528;Parent=Msa1320430-mRNA-1
chr8_4 exon 24880591 24880889 24880591 ID=Msa1320430-mRNA-1:exon:8527;Parent=Msa1320430-mRNA-1
chr8_4 exon 24879850 24880032 24879850 ID=Msa1320430-mRNA-1:exon:8526;Parent=Msa1320430-mRNA-1
chr8_4 CDS 24882530 24883058 24882530 ID=Msa1320430-mRNA-1:cds;Parent=Msa1320430-mRNA-1
chr8_4 CDS 24880591 24880889 24880591 ID=Msa1320430-mRNA-1:cds;Parent=Msa1320430-mRNA-1
chr8_4 CDS 24879850 24880032 24879850 ID=Msa1320430-mRNA-1:cds;Parent=Msa1320430-mRNA-1
Gene Sequence

>Msa1320430

ATGAGCATTGTGTATACTCAAGCTTTCAACTACTCTGAAGGTGGTTCAATGAAGAACACAGAAATGGATTCAAAATTTGGTTACTCACAAACACAACAACATTGTCTCCAAAACAATTCCGGCTTAACGCGGTATCGTTCAGCTCCAAGCTCATTACTTACAAGCCTTGTAGACACAAACATAGGTTTTTTCAATGATGAAACTTTCAGAAATGATAATCAGCAGCAGCAGCAGCAGCATTATTCTCCCTCTACAAGTTCAGAAATGGAAACCATGTTTACCAATTCTGAATCTTTGTCAGTGAAACAAGAAGAAAAGGATCCTTTTTCACATGGAATACAATACAATGATTACTCTTATGGATCTCAAAATCAGATAAATTATCAAACTCAACATAATCAAGGATTTCCAAATGGTTCTTTAGGTGTTGAAGGAAATGTTTTTGATGGTTCTTCTAATAATTGCTCCAATCTCATTAGGCAAAAGAGTTCTCCTGCTGAGTTTTTCTCCAATTATTCGGTTGATAGTGGAAGTGTAAATGGACAAGCTACTACATCATCTAGTGGATATGGTACTTTGAACTTCTCATCTAGACCATCCTCTTGCTCTATCAAGATGCCACAAATTGTTGAAAATGAACCTGAAGCTCTTCAAGCAAATTGTATTAAAAGTAGAAACATGGGAAATGATAATGGTATCACAAAATGTTACATGCCTAGCTTCACCAATGACTACTGGGATAGTTCTACTTCTACATTCAGTGCTCCAAAAAATGCTACTAATAAGGGTGAATTCATGTTTTCCACTTCAAATGCTTTGGAAAGTCAGGGTGTAGATTTTGGATACCAAAAACTTGGTTTGACCCATCATTTGAGTCTGCCTAGCTCTTCTTCCAAGATGGCTACTACGGAGAAGTTTTTACACCTTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGGTAAAAGTCTAA

Protein sequence

>Msa1320430

MSIVYTQAFNYSEGGSMKNTEMDSKFGYSQTQQHCLQNNSGLTRYRSAPSSLLTSLVDTNIGFFNDETFRNDNQQQQQQHYSPSTSSEMETMFTNSESLSVKQEEKDPFSHGIQYNDYSYGSQNQINYQTQHNQGFPNGSLGVEGNVFDGSSNNCSNLIRQKSSPAEFFSNYSVDSGSVNGQATTSSSGYGTLNFSSRPSSCSIKMPQIVENEPEALQANCIKSRNMGNDNGITKCYMPSFTNDYWDSSTSTFSAPKNATNKGEFMFSTSNALESQGVDFGYQKLGLTHHLSLPSSSSKMATTEKFLHLQGSVPCKIRAKRGFATHPRSIAERVKV*