Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306790 | XP_013469646.1 | 93.333 | 315 | 21 | 0 | 45 | 359 | 1 | 315 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306790 | sp|Q6RVV4|TIC32_PEA | 78.481 | 316 | 67 | 1 | 45 | 359 | 1 | 316 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306790 | A0A072VNT5 | 93.333 | 315 | 21 | 0 | 45 | 359 | 1 | 315 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073110 | Msa0306790 | 0.800913 | 1.153093e-48 | -8.615850e-47 |
| Msa0087120 | Msa0306790 | 0.951016 | 4.952479e-109 | -8.615850e-47 |
| Msa0174950 | Msa0306790 | 0.806293 | 8.824784e-50 | -8.615850e-47 |
| Msa0186240 | Msa0306790 | 0.802297 | 5.997599e-49 | -8.615850e-47 |
| Msa0242720 | Msa0306790 | 0.807520 | 4.856359e-50 | -8.615850e-47 |
| Msa0265650 | Msa0306790 | 0.823376 | 1.432413e-53 | -8.615850e-47 |
| Msa0303900 | Msa0306790 | 0.824824 | 6.545475e-54 | -8.615850e-47 |
| Msa0306790 | Msa0318490 | 0.806907 | 6.549279e-50 | -8.615850e-47 |
| Msa0306790 | Msa0320170 | 0.807577 | 4.722849e-50 | -8.615850e-47 |
| Msa0306790 | Msa0333770 | 0.812635 | 3.838736e-51 | -8.615850e-47 |
| Msa0306790 | Msa0393100 | 0.801014 | 1.099526e-48 | -8.615850e-47 |
| Msa0306790 | Msa0434300 | 0.800100 | 1.688504e-48 | -8.615850e-47 |
| Msa0306790 | Msa0459930 | 0.800436 | 1.442440e-48 | -8.615850e-47 |
| Msa0306790 | Msa0481440 | 0.803254 | 3.805187e-49 | -8.615850e-47 |
| Msa0306790 | Msa0522170 | 0.805970 | 1.032146e-49 | -8.615850e-47 |
| Msa0306790 | Msa0557240 | 0.806887 | 6.614084e-50 | -8.615850e-47 |
| Msa0306790 | Msa0557250 | 0.829092 | 6.245476e-55 | -8.615850e-47 |
| Msa0306790 | Msa0565180 | 0.823419 | 1.399170e-53 | -8.615850e-47 |
| Msa0306790 | Msa0603310 | 0.804318 | 2.287989e-49 | -8.615850e-47 |
| Msa0306790 | Msa0615200 | 0.802322 | 5.927411e-49 | -8.615850e-47 |
| Msa0306790 | Msa0620340 | 0.802370 | 5.794137e-49 | -8.615850e-47 |
| Msa0306790 | Msa0629160 | 0.825710 | 4.041011e-54 | -8.615850e-47 |
| Msa0306790 | Msa0652590 | 0.813598 | 2.360075e-51 | -8.615850e-47 |
| Msa0306790 | Msa0652600 | 0.801591 | 8.375657e-49 | -8.615850e-47 |
| Msa0306790 | Msa0657340 | 0.830704 | 2.528053e-55 | -8.615850e-47 |
| Msa0306790 | Msa0682110 | 0.811353 | 7.305251e-51 | -8.615850e-47 |
| Msa0306790 | Msa0682160 | 0.821310 | 4.322168e-53 | -8.615850e-47 |
| Msa0306790 | Msa0686830 | 0.809233 | 2.093555e-50 | -8.615850e-47 |
| Msa0306790 | Msa0699170 | 0.809436 | 1.893994e-50 | -8.615850e-47 |
| Msa0306790 | Msa0701430 | 0.806613 | 7.556577e-50 | -8.615850e-47 |
| Msa0306790 | Msa0725580 | 0.832777 | 7.788250e-56 | -8.615850e-47 |
| Msa0306790 | Msa0733560 | 0.800802 | 1.214522e-48 | -8.615850e-47 |
| Msa0306790 | Msa0743370 | 0.803521 | 3.350278e-49 | -8.615850e-47 |
| Msa0306790 | Msa0744710 | 0.805245 | 1.464866e-49 | -8.615850e-47 |
| Msa0306790 | Msa0774660 | 0.801340 | 9.428502e-49 | -8.615850e-47 |
| Msa0306790 | Msa0791110 | 0.916294 | 2.116536e-85 | -8.615850e-47 |
| Msa0306790 | Msa0826240 | 0.807537 | 4.815754e-50 | -8.615850e-47 |
| Msa0306790 | Msa0829990 | 0.815862 | 7.438140e-52 | -8.615850e-47 |
| Msa0306790 | Msa0838210 | 0.800700 | 1.274250e-48 | -8.615850e-47 |
| Msa0306790 | Msa0873940 | 0.807525 | 4.843198e-50 | -8.615850e-47 |
| Msa0306790 | Msa0903020 | 0.811192 | 7.915592e-51 | -8.615850e-47 |
| Msa0306790 | Msa1001120 | 0.811134 | 8.149970e-51 | -8.615850e-47 |
| Msa0306790 | Msa1007900 | 0.801987 | 6.945934e-49 | -8.615850e-47 |
| Msa0306790 | Msa1029860 | 0.801179 | 1.017201e-48 | -8.615850e-47 |
| Msa0306790 | Msa1035050 | 0.807902 | 4.028893e-50 | -8.615850e-47 |
| Msa0306790 | Msa1062060 | 0.822152 | 2.759710e-53 | -8.615850e-47 |
| Msa0306790 | Msa1071350 | 0.814649 | 1.383772e-51 | -8.615850e-47 |
| Msa0306790 | Msa1080820 | 0.807265 | 5.500204e-50 | -8.615850e-47 |
| Msa0306790 | Msa1095590 | 0.811541 | 6.650576e-51 | -8.615850e-47 |
| Msa0306790 | Msa1107220 | 0.813423 | 2.578761e-51 | -8.615850e-47 |
| Msa0306790 | Msa1108560 | 0.800918 | 1.150424e-48 | -8.615850e-47 |
| Msa0306790 | Msa1115980 | 0.804530 | 2.066452e-49 | -8.615850e-47 |
| Msa0306790 | Msa1118960 | 0.806145 | 9.480818e-50 | -8.615850e-47 |
| Msa0306790 | Msa1120580 | 0.801553 | 8.527421e-49 | -8.615850e-47 |
| Msa0306790 | Msa1136630 | 0.810125 | 1.346777e-50 | -8.615850e-47 |
| Msa0306790 | Msa1149270 | 0.809051 | 2.290328e-50 | -8.615850e-47 |
| Msa0306790 | Msa1174280 | 0.842866 | 1.990956e-58 | -8.615850e-47 |
| Msa0306790 | Msa1202110 | 0.826448 | 2.698449e-54 | -8.615850e-47 |
| Msa0306790 | Msa1239940 | 0.802522 | 5.391616e-49 | -8.615850e-47 |
| Msa0306790 | Msa1240490 | 0.803301 | 3.721294e-49 | -8.615850e-47 |
| Msa0306790 | Msa1254870 | 0.824737 | 6.863885e-54 | -8.615850e-47 |
| Msa0306790 | Msa1320430 | 0.816306 | 5.918081e-52 | -8.615850e-47 |
| Msa0306790 | Msa1328430 | 0.825283 | 5.101682e-54 | -8.615850e-47 |
| Msa0306790 | Msa1380790 | 0.806802 | 6.891335e-50 | -8.615850e-47 |
| Msa0306790 | Msa1398140 | 0.802199 | 6.283413e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306790 | MtrunA17_Chr1g0202891 | 93.333 | 315 | 21 | 0 | 45 | 359 | 1 | 315 | 0.0 | 607 |
| Msa0306790 | MtrunA17_Chr1g0202931 | 91.746 | 315 | 26 | 0 | 45 | 359 | 1 | 315 | 0.0 | 596 |
| Msa0306790 | MtrunA17_Chr1g0202871 | 82.857 | 315 | 54 | 0 | 45 | 359 | 1 | 315 | 0.0 | 543 |
| Msa0306790 | MtrunA17_Chr1g0202861 | 77.607 | 326 | 68 | 1 | 34 | 359 | 36 | 356 | 0.0 | 528 |
| Msa0306790 | MtrunA17_Chr1g0202861 | 88.889 | 36 | 4 | 0 | 1 | 36 | 104 | 139 | 5.17e-12 | 66.2 |
| Msa0306790 | MtrunA17_Chr8g0386971 | 68.167 | 311 | 99 | 0 | 45 | 355 | 1 | 311 | 1.85e-158 | 447 |
| Msa0306790 | MtrunA17_Chr6g0470321 | 70.779 | 308 | 85 | 3 | 54 | 357 | 18 | 324 | 1.07e-153 | 435 |
| Msa0306790 | MtrunA17_Chr6g0470501 | 69.055 | 307 | 92 | 2 | 54 | 357 | 37 | 343 | 1.59e-153 | 435 |
| Msa0306790 | MtrunA17_Chr1g0182541 | 58.689 | 305 | 126 | 0 | 52 | 356 | 13 | 317 | 2.99e-127 | 368 |
| Msa0306790 | MtrunA17_Chr7g0262941 | 58.824 | 306 | 125 | 1 | 52 | 356 | 13 | 318 | 2.44e-125 | 363 |
| Msa0306790 | MtrunA17_Chr4g0058731 | 45.631 | 309 | 164 | 2 | 52 | 356 | 24 | 332 | 1.89e-83 | 257 |
| Msa0306790 | MtrunA17_Chr8g0388831 | 43.260 | 319 | 177 | 3 | 44 | 358 | 5 | 323 | 3.41e-81 | 251 |
| Msa0306790 | MtrunA17_Chr3g0117241 | 49.296 | 142 | 69 | 1 | 52 | 190 | 13 | 154 | 1.23e-38 | 135 |
| Msa0306790 | MtrunA17_Chr3g0117251 | 41.176 | 170 | 99 | 1 | 191 | 359 | 1 | 170 | 9.53e-37 | 131 |
| Msa0306790 | MtrunA17_Chr6g0481311 | 35.798 | 257 | 145 | 8 | 74 | 319 | 62 | 309 | 2.27e-27 | 111 |
| Msa0306790 | MtrunA17_Chr6g0466681 | 29.889 | 271 | 170 | 7 | 69 | 335 | 62 | 316 | 3.31e-25 | 104 |
| Msa0306790 | MtrunA17_Chr1g0202911 | 64.865 | 74 | 26 | 0 | 77 | 150 | 4 | 77 | 3.94e-25 | 97.4 |
| Msa0306790 | MtrunA17_Chr1g0202911 | 77.778 | 36 | 8 | 0 | 1 | 36 | 34 | 69 | 9.89e-11 | 57.8 |
| Msa0306790 | MtrunA17_Chr2g0317921 | 31.190 | 311 | 179 | 12 | 77 | 356 | 90 | 396 | 2.55e-23 | 100 |
| Msa0306790 | MtrunA17_Chr6g0469251 | 27.609 | 297 | 185 | 10 | 81 | 356 | 14 | 301 | 3.08e-14 | 72.8 |
| Msa0306790 | MtrunA17_Chr3g0079561 | 29.134 | 254 | 150 | 11 | 124 | 356 | 13 | 257 | 5.00e-12 | 65.5 |
| Msa0306790 | MtrunA17_Chr7g0247011 | 25.172 | 290 | 159 | 11 | 76 | 327 | 9 | 278 | 3.68e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0306790 | AT4G23420.1 | 68.671 | 316 | 98 | 1 | 45 | 359 | 1 | 316 | 2.46e-161 | 454 |
| Msa0306790 | AT4G23420.2 | 68.671 | 316 | 98 | 1 | 45 | 359 | 1 | 316 | 2.46e-161 | 454 |
| Msa0306790 | AT4G23430.2 | 67.722 | 316 | 101 | 1 | 45 | 359 | 1 | 316 | 7.33e-161 | 453 |
| Msa0306790 | AT4G11410.1 | 67.619 | 315 | 102 | 0 | 45 | 359 | 1 | 315 | 1.01e-158 | 447 |
| Msa0306790 | AT4G23420.3 | 66.159 | 328 | 104 | 2 | 39 | 359 | 6 | 333 | 4.12e-158 | 447 |
| Msa0306790 | AT4G23430.1 | 67.089 | 316 | 101 | 2 | 45 | 359 | 1 | 314 | 2.67e-157 | 444 |
| Msa0306790 | AT4G23430.4 | 64.873 | 316 | 100 | 2 | 45 | 359 | 1 | 306 | 1.00e-150 | 427 |
| Msa0306790 | AT4G23430.3 | 64.241 | 316 | 100 | 3 | 45 | 359 | 1 | 304 | 1.84e-147 | 419 |
| Msa0306790 | AT4G23420.5 | 69.847 | 262 | 78 | 1 | 45 | 305 | 1 | 262 | 1.14e-133 | 382 |
| Msa0306790 | AT4G23420.4 | 74.684 | 237 | 60 | 0 | 45 | 281 | 1 | 237 | 1.90e-131 | 376 |
| Msa0306790 | AT2G37540.1 | 55.700 | 307 | 136 | 0 | 50 | 356 | 10 | 316 | 3.61e-124 | 360 |
| Msa0306790 | AT5G02540.1 | 58.632 | 307 | 127 | 0 | 50 | 356 | 10 | 316 | 7.28e-123 | 357 |
| Msa0306790 | AT4G11410.2 | 68.980 | 245 | 76 | 0 | 45 | 289 | 1 | 245 | 3.18e-122 | 353 |
| Msa0306790 | AT2G37540.2 | 58.650 | 237 | 98 | 0 | 50 | 286 | 10 | 246 | 3.43e-100 | 297 |
| Msa0306790 | AT4G24050.1 | 44.839 | 310 | 168 | 2 | 52 | 358 | 13 | 322 | 4.13e-85 | 261 |
| Msa0306790 | AT5G50130.1 | 46.945 | 311 | 161 | 3 | 52 | 358 | 13 | 323 | 2.99e-84 | 259 |
| Msa0306790 | AT5G50130.8 | 46.290 | 283 | 151 | 1 | 77 | 358 | 7 | 289 | 1.81e-77 | 241 |
| Msa0306790 | AT5G50130.7 | 46.479 | 284 | 150 | 2 | 77 | 358 | 7 | 290 | 4.06e-77 | 239 |
| Msa0306790 | AT1G64590.1 | 44.746 | 295 | 160 | 2 | 61 | 352 | 22 | 316 | 5.70e-73 | 230 |
| Msa0306790 | AT5G50130.2 | 45.196 | 281 | 149 | 4 | 52 | 327 | 13 | 293 | 1.92e-69 | 221 |
| Msa0306790 | AT5G50130.4 | 45.390 | 282 | 148 | 5 | 52 | 327 | 13 | 294 | 4.83e-69 | 219 |
| Msa0306790 | AT5G50130.9 | 48.980 | 245 | 122 | 2 | 52 | 293 | 13 | 257 | 7.04e-69 | 217 |
| Msa0306790 | AT4G24050.2 | 44.697 | 264 | 141 | 3 | 52 | 312 | 13 | 274 | 8.52e-69 | 217 |
| Msa0306790 | AT5G50130.3 | 49.187 | 246 | 121 | 3 | 52 | 293 | 13 | 258 | 1.76e-68 | 216 |
| Msa0306790 | AT5G50130.6 | 44.488 | 254 | 138 | 3 | 77 | 327 | 7 | 260 | 1.86e-62 | 201 |
| Msa0306790 | AT5G50130.5 | 44.706 | 255 | 137 | 4 | 77 | 327 | 7 | 261 | 5.37e-62 | 200 |
| Msa0306790 | AT4G27760.1 | 31.270 | 307 | 174 | 10 | 74 | 356 | 58 | 351 | 1.74e-29 | 117 |
| Msa0306790 | AT1G03630.2 | 33.866 | 313 | 169 | 13 | 76 | 356 | 90 | 396 | 1.75e-26 | 109 |
| Msa0306790 | AT1G03630.1 | 33.758 | 314 | 170 | 13 | 75 | 356 | 91 | 398 | 1.77e-26 | 109 |
| Msa0306790 | AT5G54190.1 | 30.547 | 311 | 181 | 12 | 77 | 356 | 96 | 402 | 2.01e-26 | 109 |
| Msa0306790 | AT5G53090.1 | 31.561 | 301 | 181 | 6 | 74 | 356 | 57 | 350 | 1.14e-25 | 106 |
| Msa0306790 | AT4G09750.1 | 29.137 | 278 | 155 | 8 | 73 | 335 | 43 | 293 | 7.01e-25 | 103 |
| Msa0306790 | AT5G53100.1 | 30.263 | 304 | 184 | 7 | 74 | 356 | 45 | 341 | 4.85e-24 | 102 |
| Msa0306790 | AT4G27440.2 | 31.325 | 332 | 189 | 14 | 60 | 356 | 71 | 398 | 6.66e-24 | 102 |
| Msa0306790 | AT4G27440.1 | 31.325 | 332 | 189 | 14 | 60 | 356 | 71 | 398 | 6.66e-24 | 102 |
| Msa0306790 | AT5G15940.3 | 28.803 | 309 | 190 | 11 | 71 | 358 | 58 | 357 | 9.48e-21 | 92.8 |
| Msa0306790 | AT5G15940.2 | 28.803 | 309 | 190 | 11 | 71 | 358 | 58 | 357 | 9.48e-21 | 92.8 |
| Msa0306790 | AT5G15940.1 | 28.803 | 309 | 190 | 11 | 71 | 358 | 57 | 356 | 9.66e-21 | 92.4 |
| Msa0306790 | AT5G04070.1 | 27.723 | 303 | 191 | 7 | 75 | 358 | 60 | 353 | 8.49e-19 | 87.0 |
| Msa0306790 | AT5G54190.2 | 28.070 | 285 | 171 | 11 | 102 | 356 | 1 | 281 | 1.75e-18 | 85.1 |
| Msa0306790 | AT5G15940.4 | 28.947 | 228 | 145 | 5 | 71 | 285 | 58 | 281 | 9.02e-16 | 77.8 |
| Msa0306790 | AT5G61830.1 | 23.448 | 290 | 170 | 8 | 75 | 329 | 38 | 310 | 3.00e-13 | 70.1 |
| Msa0306790 | AT5G61830.2 | 23.448 | 290 | 170 | 8 | 75 | 329 | 38 | 310 | 3.00e-13 | 70.1 |
Find 81 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCAAGAAAGGGGTTTC+TGG | 0.179687 | 2_3:+65909854 | Msa0306790:CDS |
| CCTTCCCTGTGATTCTCTTT+TGG | 0.235273 | 2_3:-65912428 | None:intergenic |
| ATGCAGTTCAATGTTGTCTT+TGG | 0.245720 | 2_3:-65911142 | None:intergenic |
| TTTCAGCATGAATTTGATTA+AGG | 0.259296 | 2_3:+65912480 | Msa0306790:CDS |
| GCGTGGTGTCCATGTGATTA+TGG | 0.305515 | 2_3:+65910339 | Msa0306790:CDS |
| CACCAATCTTTCCCGCCATA+TGG | 0.337645 | 2_3:+65911850 | Msa0306790:CDS |
| GATTTGGTTATTACCTTGAT+TGG | 0.339925 | 2_3:-65911492 | None:intergenic |
| CGCTAACTCCCTTCACTTGT+GGG | 0.342424 | 2_3:-65912378 | None:intergenic |
| TTGTCAAAACGGATTCCTTC+AGG | 0.344301 | 2_3:-65911460 | None:intergenic |
| TTGTATACAGTTACAGCAAA+TGG | 0.345777 | 2_3:+65911625 | Msa0306790:intron |
| ACAGGGAAGGGACGCTGATT+TGG | 0.349751 | 2_3:+65912441 | Msa0306790:CDS |
| CTGATTTGGCTAAGAAACTT+TGG | 0.364749 | 2_3:+65912455 | Msa0306790:CDS |
| AAAGGGGTTTCTGGATTCTC+AGG | 0.371144 | 2_3:+65909863 | Msa0306790:CDS |
| GATTATGGCTGTTAGAAATA+AGG | 0.377539 | 2_3:+65910354 | Msa0306790:CDS |
| GGAGTTAGATCTCAGTTCAT+TGG | 0.382633 | 2_3:+65910441 | Msa0306790:CDS |
| ACAGGTATAATAAAGGTGAT+TGG | 0.389434 | 2_3:+65912169 | Msa0306790:intron |
| ACCCATATGGCGGGAAAGAT+TGG | 0.391956 | 2_3:-65911852 | None:intergenic |
| GAGGCATCTTGCAAGTTCAT+TGG | 0.404865 | 2_3:-65911688 | None:intergenic |
| CAGGTATAATAAAGGTGATT+GGG | 0.427139 | 2_3:+65912170 | Msa0306790:intron |
| TACAGCAAATGGGGTGCATA+TGG | 0.428773 | 2_3:+65911636 | Msa0306790:CDS |
| GAATGGCCACATGATGATAA+TGG | 0.429571 | 2_3:-65909834 | None:intergenic |
| ACAGGAGCATCCAGTGGTAT+TGG | 0.435914 | 2_3:+65910289 | Msa0306790:intron |
| TGTATACAGTTACAGCAAAT+GGG | 0.440853 | 2_3:+65911626 | Msa0306790:intron |
| GGAGTTAGATCTCAGCTCAT+TGG | 0.445576 | 2_3:+65909588 | Msa0306790:CDS |
| CGCCATATGGGTGTACTTGA+CGG | 0.445799 | 2_3:+65911863 | Msa0306790:CDS |
| ACAAAATTAATGACCAATCA+AGG | 0.448930 | 2_3:+65911479 | Msa0306790:CDS |
| TTACATCTTGATCAGGATGA+TGG | 0.449048 | 2_3:+65911785 | Msa0306790:intron |
| TTATGCAACAGGTATAATAA+AGG | 0.452058 | 2_3:+65912162 | Msa0306790:intron |
| CCGCTAACTCCCTTCACTTG+TGG | 0.453882 | 2_3:-65912379 | None:intergenic |
| AAGACCAGTGGAATCAAATT+CGG | 0.464641 | 2_3:-65910485 | None:intergenic |
| ATGTGGCCATTCAGCAAGAA+AGG | 0.469855 | 2_3:+65909845 | Msa0306790:CDS |
| GAAACCCCTTTCTTGCTGAA+TGG | 0.470036 | 2_3:-65909851 | None:intergenic |
| TCTTACATCAAGATGTTCAA+TGG | 0.471739 | 2_3:-65910508 | None:intergenic |
| AGATTGGTGAGAATGATTCC+TGG | 0.477751 | 2_3:-65911836 | None:intergenic |
| TTCATTGGCATGTAAAATGT+TGG | 0.478897 | 2_3:-65911673 | None:intergenic |
| GGCCTCATTGCTATTGTCAC+TGG | 0.483291 | 2_3:+65909929 | Msa0306790:CDS |
| CTCTGCTAAAATTGATGTCA+TGG | 0.483780 | 2_3:+65910420 | Msa0306790:CDS |
| CTCTGCTAAACTTGATGCCA+TGG | 0.490137 | 2_3:+65909567 | Msa0306790:CDS |
| TTGTCTTTGGACAGCATGAA+AGG | 0.496194 | 2_3:-65911129 | None:intergenic |
| GCATCCGAATTTGATTCCAC+TGG | 0.499929 | 2_3:+65910481 | Msa0306790:CDS |
| TGTGGCCATTCAGCAAGAAA+GGG | 0.508330 | 2_3:+65909846 | Msa0306790:CDS |
| ACCAATCTTTCCCGCCATAT+GGG | 0.511754 | 2_3:+65911851 | Msa0306790:CDS |
| CAGCATGAATTTGATTAAGG+AGG | 0.517327 | 2_3:+65912483 | Msa0306790:CDS |
| TGTGGCCAAAAGAGAATCAC+AGG | 0.521249 | 2_3:+65912423 | Msa0306790:CDS |
| GCACATGAAAGTAAGAAAGA+AGG | 0.529008 | 2_3:+65911394 | Msa0306790:CDS |
| TACCGTCAAGTACACCCATA+TGG | 0.533410 | 2_3:-65911865 | None:intergenic |
| TTCAGGATATGCAAATATGT+AGG | 0.537061 | 2_3:-65911443 | None:intergenic |
| ATTGTGAATTCTCTTCATCC+AGG | 0.539076 | 2_3:+65911818 | Msa0306790:CDS |
| CCACAAGTGAAGGGAGTTAG+CGG | 0.540315 | 2_3:+65912379 | Msa0306790:CDS |
| AGCATTGCACCCACAAGTGA+AGG | 0.549189 | 2_3:+65912369 | Msa0306790:CDS |
| ACTGCTGAACAAGTTACTCA+TGG | 0.551436 | 2_3:+65909893 | Msa0306790:CDS |
| TGTCTTTGGACAGCATGAAA+GGG | 0.555783 | 2_3:-65911128 | None:intergenic |
| GTAATTGCAAGAAACAATGC+AGG | 0.558972 | 2_3:+65911093 | Msa0306790:intron |
| TACATCTTGATCAGGATGAT+GGG | 0.560641 | 2_3:+65911786 | Msa0306790:intron |
| GTCAAGTACACCCATATGGC+GGG | 0.577914 | 2_3:-65911861 | None:intergenic |
| AGTCTCAACTCCAATACCAC+TGG | 0.581087 | 2_3:-65910299 | None:intergenic |
| TGTCAAAGAAACAATACTCA+AGG | 0.582192 | 2_3:+65909537 | Msa0306790:CDS |
| TACATATTTGCATATCCTGA+AGG | 0.585299 | 2_3:+65911445 | Msa0306790:CDS |
| CAAAAGAGAATCACAGGGAA+GGG | 0.585563 | 2_3:+65912429 | Msa0306790:CDS |
| AAGGGGTTTCTGGATTCTCA+GGG | 0.585889 | 2_3:+65909864 | Msa0306790:CDS |
| ATGCGTGTTCTTGCTTTGCG+TGG | 0.595996 | 2_3:+65910322 | Msa0306790:CDS |
| CCAAAAGAGAATCACAGGGA+AGG | 0.615970 | 2_3:+65912428 | Msa0306790:CDS |
| TGAACTTGCAAGATGCCTCA+AGG | 0.616025 | 2_3:+65911692 | Msa0306790:CDS |
| GAGTTTCCATTATCATCATG+TGG | 0.618765 | 2_3:+65909828 | Msa0306790:CDS |
| TTCTAACAGCCATAATCACA+TGG | 0.621462 | 2_3:-65910348 | None:intergenic |
| GCATTGCACCCACAAGTGAA+GGG | 0.624705 | 2_3:+65912370 | Msa0306790:CDS |
| TCTTGATCAGGATGATGGGG+TGG | 0.624894 | 2_3:+65911790 | Msa0306790:intron |
| CAATGCTACATAGCATGTTG+TGG | 0.627328 | 2_3:-65912353 | None:intergenic |
| GTGGCCATTCAGCAAGAAAG+GGG | 0.627372 | 2_3:+65909847 | Msa0306790:CDS |
| GATGTTCAATGGAAGACCAG+TGG | 0.631573 | 2_3:-65910497 | None:intergenic |
| CGTCAAGTACACCCATATGG+CGG | 0.638805 | 2_3:-65911862 | None:intergenic |
| ACTCATGGAATTGATGCAAG+TGG | 0.647904 | 2_3:+65909908 | Msa0306790:CDS |
| TGAGCTGAGATCTAACTCCA+TGG | 0.649334 | 2_3:-65909584 | None:intergenic |
| ATGGCATCAAGTTTAGCAGA+GGG | 0.654356 | 2_3:-65909565 | None:intergenic |
| GTATACAGTTACAGCAAATG+GGG | 0.659776 | 2_3:+65911627 | Msa0306790:intron |
| ACATCTTGATCAGGATGATG+GGG | 0.677424 | 2_3:+65911787 | Msa0306790:intron |
| CATGGCATCAAGTTTAGCAG+AGG | 0.683203 | 2_3:-65909566 | None:intergenic |
| ATGGTAACAGGAGCATCCAG+TGG | 0.683391 | 2_3:+65910283 | Msa0306790:intron |
| ATATTTCCCACATACCTAGG+TGG | 0.684024 | 2_3:-65911176 | None:intergenic |
| GACCAGTGACAATAGCAATG+AGG | 0.700937 | 2_3:-65909931 | None:intergenic |
| GTGGCCAAAAGAGAATCACA+GGG | 0.763656 | 2_3:+65912424 | Msa0306790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAATAAATAGTAAATAAA+AGG | - | chr2_3:65910982-65911001 | None:intergenic | 10.0% |
| !! | AAAACATAACTTAATTATAT+AGG | - | chr2_3:65911225-65911244 | None:intergenic | 10.0% |
| !!! | ATTTTATTTATGATTTACGT+TGG | - | chr2_3:65909709-65909728 | None:intergenic | 15.0% |
| !! | AAAAACTACTATTTAACAAA+GGG | - | chr2_3:65910011-65910030 | None:intergenic | 15.0% |
| !! | TAAAAACTACTATTTAACAA+AGG | - | chr2_3:65910012-65910031 | None:intergenic | 15.0% |
| !! | AAATTATTATATGGATATGA+TGG | + | chr2_3:65910259-65910278 | Msa0306790:intron | 15.0% |
| !! | GAAACTTTAAATTAAGTTAA+AGG | + | chr2_3:65910939-65910958 | Msa0306790:intron | 15.0% |
| !!! | TTTTATGTTGCAGAATTATT+TGG | + | chr2_3:65910027-65910046 | Msa0306790:intron | 20.0% |
| !! | AAAACTTTAGATTAAGTTAG+AGG | - | chr2_3:65910592-65910611 | None:intergenic | 20.0% |
| !! | TCATTGAACAATATATGATA+AGG | - | chr2_3:65910813-65910832 | None:intergenic | 20.0% |
| !! | TAACAACTTCAATAAAAATC+AGG | - | chr2_3:65911008-65911027 | None:intergenic | 20.0% |
| !!! | ACTTAATTATATAGGTTGAT+TGG | - | chr2_3:65911217-65911236 | None:intergenic | 20.0% |
| !! | TATCATTCATCTACATTTAT+AGG | + | chr2_3:65912032-65912051 | Msa0306790:intron | 20.0% |
| ! | TTACATAAAATTCTTGCAAC+TGG | + | chr2_3:65910229-65910248 | Msa0306790:intron | 25.0% |
| ! | GGCTACGATAAATTATTATA+TGG | + | chr2_3:65910250-65910269 | Msa0306790:intron | 25.0% |
| ! | ATTATATGGATATGATGGTA+TGG | + | chr2_3:65910264-65910283 | Msa0306790:intron | 25.0% |
| ! | GTTTACAGAAAAACTCTTTA+TGG | + | chr2_3:65910684-65910703 | Msa0306790:intron | 25.0% |
| ! | TTGAACGCTGTAAATATAAA+GGG | + | chr2_3:65910880-65910899 | Msa0306790:intron | 25.0% |
| ! | TTCTTTAAATGCTTAAACTG+TGG | + | chr2_3:65911275-65911294 | Msa0306790:intron | 25.0% |
| ! | TGTAAATTATGTAATTGTGC+AGG | + | chr2_3:65911325-65911344 | Msa0306790:intron | 25.0% |
| !! | GGTCATTAATTTTGTCAAAA+CGG | - | chr2_3:65911474-65911493 | None:intergenic | 25.0% |
| ! | ACAAAATTAATGACCAATCA+AGG | + | chr2_3:65911479-65911498 | Msa0306790:CDS | 25.0% |
| !!! | TTTGTTTTTGTGTGTAAAAC+TGG | + | chr2_3:65911729-65911748 | Msa0306790:intron | 25.0% |
| !! | TGTCATTACTACACATTTTA+TGG | - | chr2_3:65912104-65912123 | None:intergenic | 25.0% |
| !! | TTATGTTTGATTTATGCAAC+AGG | + | chr2_3:65912151-65912170 | Msa0306790:intron | 25.0% |
| ! | TTATGCAACAGGTATAATAA+AGG | + | chr2_3:65912162-65912181 | Msa0306790:intron | 25.0% |
| ! | AATCAGTTCAAATAAATGTG+AGG | + | chr2_3:65912229-65912248 | Msa0306790:intron | 25.0% |
| ! | AGGATCAGTTCAAATAAAAT+TGG | + | chr2_3:65912249-65912268 | Msa0306790:intron | 25.0% |
| !!! | GTATTTTTCAGACAATAATG+TGG | + | chr2_3:65912405-65912424 | Msa0306790:CDS | 25.0% |
| ! | TTTCAGCATGAATTTGATTA+AGG | + | chr2_3:65912480-65912499 | Msa0306790:CDS | 25.0% |
| TGTCAAAGAAACAATACTCA+AGG | + | chr2_3:65909537-65909556 | Msa0306790:CDS | 30.0% | |
| TATTTGAATGATGACATCAG+TGG | + | chr2_3:65909640-65909659 | Msa0306790:intron | 30.0% | |
| ATTTGAATGATGACATCAGT+GGG | + | chr2_3:65909641-65909660 | Msa0306790:intron | 30.0% | |
| ATTGACATTGTGAATTGTGA+CGG | + | chr2_3:65909799-65909818 | Msa0306790:intron | 30.0% | |
| GATTATGGCTGTTAGAAATA+AGG | + | chr2_3:65910354-65910373 | Msa0306790:CDS | 30.0% | |
| !! | ATGACATCAATTTTAGCAGA+GGG | - | chr2_3:65910421-65910440 | None:intergenic | 30.0% |
| TCTTACATCAAGATGTTCAA+TGG | - | chr2_3:65910511-65910530 | None:intergenic | 30.0% | |
| GAACATCTTGATGTAAGAAA+AGG | + | chr2_3:65910513-65910532 | Msa0306790:intron | 30.0% | |
| ! | CAGTTTTGCCTAAACAAAAA+TGG | - | chr2_3:65910559-65910578 | None:intergenic | 30.0% |
| GTTGAACGCTGTAAATATAA+AGG | + | chr2_3:65910879-65910898 | Msa0306790:intron | 30.0% | |
| TAAAAGGAAAATCTGCACAT+GGG | - | chr2_3:65910966-65910985 | None:intergenic | 30.0% | |
| ATAAAAGGAAAATCTGCACA+TGG | - | chr2_3:65910967-65910986 | None:intergenic | 30.0% | |
| CATGATCAAGAAAGATAAAC+TGG | - | chr2_3:65911066-65911085 | None:intergenic | 30.0% | |
| !!! | GGGAAATATGTTTGGTTTTA+AGG | + | chr2_3:65911190-65911209 | Msa0306790:intron | 30.0% |
| ! | TCTCTTGACAAATCTTTTGT+TGG | + | chr2_3:65911354-65911373 | Msa0306790:CDS | 30.0% |
| TTCAGGATATGCAAATATGT+AGG | - | chr2_3:65911446-65911465 | None:intergenic | 30.0% | |
| TACATATTTGCATATCCTGA+AGG | + | chr2_3:65911445-65911464 | Msa0306790:CDS | 30.0% | |
| ! | GATTTGGTTATTACCTTGAT+TGG | - | chr2_3:65911495-65911514 | None:intergenic | 30.0% |
| AGGTAATAACCAAATCCAAT+AGG | + | chr2_3:65911499-65911518 | Msa0306790:intron | 30.0% | |
| TTTGAACTTAGGTTACCTAT+TGG | - | chr2_3:65911517-65911536 | None:intergenic | 30.0% | |
| CTTAATTCTTCATGCAACTA+AGG | - | chr2_3:65911575-65911594 | None:intergenic | 30.0% | |
| ATGAAGAATTAAGAGTGGAA+AGG | + | chr2_3:65911582-65911601 | Msa0306790:intron | 30.0% | |
| !! | ATTTGCTGTAACTGTATACA+AGG | - | chr2_3:65911626-65911645 | None:intergenic | 30.0% |
| TTGTATACAGTTACAGCAAA+TGG | + | chr2_3:65911625-65911644 | Msa0306790:intron | 30.0% | |
| TGTATACAGTTACAGCAAAT+GGG | + | chr2_3:65911626-65911645 | Msa0306790:intron | 30.0% | |
| TTCATTGGCATGTAAAATGT+TGG | - | chr2_3:65911676-65911695 | None:intergenic | 30.0% | |
| ! | TTACTTGTTACATCTTGATC+AGG | + | chr2_3:65911778-65911797 | Msa0306790:intron | 30.0% |
| ! | ATTTAGAATGTCATGTCACA+GGG | - | chr2_3:65911946-65911965 | None:intergenic | 30.0% |
| CATTATCTACCAATGTTATG+TGG | + | chr2_3:65911979-65911998 | Msa0306790:intron | 30.0% | |
| ! | ATGACAGTATCTCAGTTTTA+TGG | + | chr2_3:65912118-65912137 | Msa0306790:intron | 30.0% |
| ACAGGTATAATAAAGGTGAT+TGG | + | chr2_3:65912169-65912188 | Msa0306790:intron | 30.0% | |
| CAGGTATAATAAAGGTGATT+GGG | + | chr2_3:65912170-65912189 | Msa0306790:intron | 30.0% | |
| ACTTTCTCCTATCTAAATGT+AGG | + | chr2_3:65912324-65912343 | Msa0306790:intron | 30.0% | |
| CTTTCTCCTATCTAAATGTA+GGG | + | chr2_3:65912325-65912344 | Msa0306790:intron | 30.0% | |
| TTTCTCCTATCTAAATGTAG+GGG | + | chr2_3:65912326-65912345 | Msa0306790:intron | 30.0% | |
| GAGTTTCCATTATCATCATG+TGG | + | chr2_3:65909828-65909847 | Msa0306790:CDS | 35.0% | |
| TTCTAACAGCCATAATCACA+TGG | - | chr2_3:65910351-65910370 | None:intergenic | 35.0% | |
| !! | CATGACATCAATTTTAGCAG+AGG | - | chr2_3:65910422-65910441 | None:intergenic | 35.0% |
| CTCTGCTAAAATTGATGTCA+TGG | + | chr2_3:65910420-65910439 | Msa0306790:CDS | 35.0% | |
| AAGACCAGTGGAATCAAATT+CGG | - | chr2_3:65910488-65910507 | None:intergenic | 35.0% | |
| TGTAAGAAAAGGAACTGACT+TGG | + | chr2_3:65910524-65910543 | Msa0306790:intron | 35.0% | |
| !! | TCCCAGAACCATTTTTGTTT+AGG | + | chr2_3:65910548-65910567 | Msa0306790:intron | 35.0% |
| GCCTAAACAAAAATGGTTCT+GGG | - | chr2_3:65910552-65910571 | None:intergenic | 35.0% | |
| TGCCTAAACAAAAATGGTTC+TGG | - | chr2_3:65910553-65910572 | None:intergenic | 35.0% | |
| ! | CTTTTGTGGTCAATTTCTGT+GGG | - | chr2_3:65910715-65910734 | None:intergenic | 35.0% |
| ! | TCTTTTGTGGTCAATTTCTG+TGG | - | chr2_3:65910716-65910735 | None:intergenic | 35.0% |
| ! | TCTCAGATTCGAATCTTTTG+TGG | - | chr2_3:65910729-65910748 | None:intergenic | 35.0% |
| TATAAAGGGCTAACTTGACA+CGG | + | chr2_3:65910894-65910913 | Msa0306790:intron | 35.0% | |
| GTAATTGCAAGAAACAATGC+AGG | + | chr2_3:65911093-65911112 | Msa0306790:intron | 35.0% | |
| ATGCAGTTCAATGTTGTCTT+TGG | - | chr2_3:65911145-65911164 | None:intergenic | 35.0% | |
| AACATATTTCCCACATACCT+AGG | - | chr2_3:65911182-65911201 | None:intergenic | 35.0% | |
| AGGTATGTGGGAAATATGTT+TGG | + | chr2_3:65911182-65911201 | Msa0306790:intron | 35.0% | |
| GCACATGAAAGTAAGAAAGA+AGG | + | chr2_3:65911394-65911413 | Msa0306790:CDS | 35.0% | |
| ! | TGCAAATATGTAGGCTTTTG+CGG | - | chr2_3:65911437-65911456 | None:intergenic | 35.0% |
| CTTAGGTTACCTATTGGATT+TGG | - | chr2_3:65911511-65911530 | None:intergenic | 35.0% | |
| TCTCGTCATGATTTGAACTT+AGG | - | chr2_3:65911528-65911547 | None:intergenic | 35.0% | |
| GTTGCATGAAGAATTAAGAG+TGG | + | chr2_3:65911577-65911596 | Msa0306790:intron | 35.0% | |
| AAGAATTAAGAGTGGAAAGG+TGG | + | chr2_3:65911585-65911604 | Msa0306790:intron | 35.0% | |
| CTGTAACTGTATACAAGGAA+GGG | - | chr2_3:65911621-65911640 | None:intergenic | 35.0% | |
| GTATACAGTTACAGCAAATG+GGG | + | chr2_3:65911627-65911646 | Msa0306790:intron | 35.0% | |
| TTACATCTTGATCAGGATGA+TGG | + | chr2_3:65911785-65911804 | Msa0306790:intron | 35.0% | |
| TACATCTTGATCAGGATGAT+GGG | + | chr2_3:65911786-65911805 | Msa0306790:intron | 35.0% | |
| ATTGTGAATTCTCTTCATCC+AGG | + | chr2_3:65911818-65911837 | Msa0306790:CDS | 35.0% | |
| ! | CATTTAGAATGTCATGTCAC+AGG | - | chr2_3:65911947-65911966 | None:intergenic | 35.0% |
| !!! | TAGGTGTTTTATTTGCACAC+TGG | + | chr2_3:65912051-65912070 | Msa0306790:intron | 35.0% |
| TGTGATGAAAAATGTTCAGC+AGG | + | chr2_3:65912198-65912217 | Msa0306790:CDS | 35.0% | |
| TTCTCCTATCTAAATGTAGG+GGG | + | chr2_3:65912327-65912346 | Msa0306790:intron | 35.0% | |
| !! | CTGATTTGGCTAAGAAACTT+TGG | + | chr2_3:65912455-65912474 | Msa0306790:CDS | 35.0% |
| CAGCATGAATTTGATTAAGG+AGG | + | chr2_3:65912483-65912502 | Msa0306790:CDS | 35.0% | |
| ATGGCATCAAGTTTAGCAGA+GGG | - | chr2_3:65909568-65909587 | None:intergenic | 40.0% | |
| AATGATGACATCAGTGGGAT+TGG | + | chr2_3:65909646-65909665 | Msa0306790:intron | 40.0% | |
| CAATAGTGCAGATCATGCTT+TGG | - | chr2_3:65909783-65909802 | None:intergenic | 40.0% | |
| GAATGGCCACATGATGATAA+TGG | - | chr2_3:65909837-65909856 | None:intergenic | 40.0% | |
| ACTGCTGAACAAGTTACTCA+TGG | + | chr2_3:65909893-65909912 | Msa0306790:CDS | 40.0% | |
| ACTCATGGAATTGATGCAAG+TGG | + | chr2_3:65909908-65909927 | Msa0306790:CDS | 40.0% | |
| CTGCTGAAATTTGCATAGTC+AGG | + | chr2_3:65910177-65910196 | Msa0306790:intron | 40.0% | |
| GGATATGATGGTATGGTAAC+AGG | + | chr2_3:65910271-65910290 | Msa0306790:intron | 40.0% | |
| GGAGTTAGATCTCAGTTCAT+TGG | + | chr2_3:65910441-65910460 | Msa0306790:CDS | 40.0% | |
| TGTTTAGGCAAAACTGCACT+AGG | + | chr2_3:65910563-65910582 | Msa0306790:intron | 40.0% | |
| ATAAAGGGCTAACTTGACAC+GGG | + | chr2_3:65910895-65910914 | Msa0306790:intron | 40.0% | |
| AACTGGAACACAGATACTCA+TGG | - | chr2_3:65911049-65911068 | None:intergenic | 40.0% | |
| TGTCTTTGGACAGCATGAAA+GGG | - | chr2_3:65911131-65911150 | None:intergenic | 40.0% | |
| TTGTCTTTGGACAGCATGAA+AGG | - | chr2_3:65911132-65911151 | None:intergenic | 40.0% | |
| ! | CATTTTGCAACAAACCACCT+AGG | + | chr2_3:65911162-65911181 | Msa0306790:CDS | 40.0% |
| AACAAACCACCTAGGTATGT+GGG | + | chr2_3:65911170-65911189 | Msa0306790:intron | 40.0% | |
| ATATTTCCCACATACCTAGG+TGG | - | chr2_3:65911179-65911198 | None:intergenic | 40.0% | |
| ! | TTGTCAAAACGGATTCCTTC+AGG | - | chr2_3:65911463-65911482 | None:intergenic | 40.0% |
| GCTGTAACTGTATACAAGGA+AGG | - | chr2_3:65911622-65911641 | None:intergenic | 40.0% | |
| ACATCTTGATCAGGATGATG+GGG | + | chr2_3:65911787-65911806 | Msa0306790:intron | 40.0% | |
| AGATTGGTGAGAATGATTCC+TGG | - | chr2_3:65911839-65911858 | None:intergenic | 40.0% | |
| ACGATAGTGCCACATAACAT+TGG | - | chr2_3:65911991-65912010 | None:intergenic | 40.0% | |
| AATGTTATGTGGCACTATCG+TGG | + | chr2_3:65911990-65912009 | Msa0306790:intron | 40.0% | |
| ! | GCACTATCGTGGATTTTACA+AGG | + | chr2_3:65912001-65912020 | Msa0306790:intron | 40.0% |
| CAATGCTACATAGCATGTTG+TGG | - | chr2_3:65912356-65912375 | None:intergenic | 40.0% | |
| CAAAAGAGAATCACAGGGAA+GGG | + | chr2_3:65912429-65912448 | Msa0306790:CDS | 40.0% | |
| CATGGCATCAAGTTTAGCAG+AGG | - | chr2_3:65909569-65909588 | None:intergenic | 45.0% | |
| CTCTGCTAAACTTGATGCCA+TGG | + | chr2_3:65909567-65909586 | Msa0306790:CDS | 45.0% | |
| TGAGCTGAGATCTAACTCCA+TGG | - | chr2_3:65909587-65909606 | None:intergenic | 45.0% | |
| GGAGTTAGATCTCAGCTCAT+TGG | + | chr2_3:65909588-65909607 | Msa0306790:CDS | 45.0% | |
| ATGTGGCCATTCAGCAAGAA+AGG | + | chr2_3:65909845-65909864 | Msa0306790:CDS | 45.0% | |
| TGTGGCCATTCAGCAAGAAA+GGG | + | chr2_3:65909846-65909865 | Msa0306790:CDS | 45.0% | |
| GAAACCCCTTTCTTGCTGAA+TGG | - | chr2_3:65909854-65909873 | None:intergenic | 45.0% | |
| TTCAGCAAGAAAGGGGTTTC+TGG | + | chr2_3:65909854-65909873 | Msa0306790:CDS | 45.0% | |
| ! | AAAGGGGTTTCTGGATTCTC+AGG | + | chr2_3:65909863-65909882 | Msa0306790:CDS | 45.0% |
| ! | AAGGGGTTTCTGGATTCTCA+GGG | + | chr2_3:65909864-65909883 | Msa0306790:CDS | 45.0% |
| GACCAGTGACAATAGCAATG+AGG | - | chr2_3:65909934-65909953 | None:intergenic | 45.0% | |
| AGTCTCAACTCCAATACCAC+TGG | - | chr2_3:65910302-65910321 | None:intergenic | 45.0% | |
| GCATCCGAATTTGATTCCAC+TGG | + | chr2_3:65910481-65910500 | Msa0306790:CDS | 45.0% | |
| GATGTTCAATGGAAGACCAG+TGG | - | chr2_3:65910500-65910519 | None:intergenic | 45.0% | |
| TATGATAAGGAAACCCCCAG+CGG | - | chr2_3:65910800-65910819 | None:intergenic | 45.0% | |
| TAAAGGGCTAACTTGACACG+GGG | + | chr2_3:65910896-65910915 | Msa0306790:intron | 45.0% | |
| CAACAAACCACCTAGGTATG+TGG | + | chr2_3:65911169-65911188 | Msa0306790:intron | 45.0% | |
| TACAGCAAATGGGGTGCATA+TGG | + | chr2_3:65911636-65911655 | Msa0306790:CDS | 45.0% | |
| ! | GAGGCATCTTGCAAGTTCAT+TGG | - | chr2_3:65911691-65911710 | None:intergenic | 45.0% |
| TGAACTTGCAAGATGCCTCA+AGG | + | chr2_3:65911692-65911711 | Msa0306790:CDS | 45.0% | |
| AGAGAAACTAGCACACCTTG+AGG | - | chr2_3:65911710-65911729 | None:intergenic | 45.0% | |
| ACCAATCTTTCCCGCCATAT+GGG | + | chr2_3:65911851-65911870 | Msa0306790:CDS | 45.0% | |
| TACCGTCAAGTACACCCATA+TGG | - | chr2_3:65911868-65911887 | None:intergenic | 45.0% | |
| TGTGGCCAAAAGAGAATCAC+AGG | + | chr2_3:65912423-65912442 | Msa0306790:CDS | 45.0% | |
| GTGGCCAAAAGAGAATCACA+GGG | + | chr2_3:65912424-65912443 | Msa0306790:CDS | 45.0% | |
| ! | CCTTCCCTGTGATTCTCTTT+TGG | - | chr2_3:65912431-65912450 | None:intergenic | 45.0% |
| CCAAAAGAGAATCACAGGGA+AGG | + | chr2_3:65912428-65912447 | Msa0306790:CDS | 45.0% | |
| !!! | AAAATGAAATTTTTTAAAAA+TGG | - | chr2_3:65909979-65909998 | None:intergenic | 5.0% |
| GTGGCCATTCAGCAAGAAAG+GGG | + | chr2_3:65909847-65909866 | Msa0306790:CDS | 50.0% | |
| ! | GGCCTCATTGCTATTGTCAC+TGG | + | chr2_3:65909929-65909948 | Msa0306790:CDS | 50.0% |
| !! | ATGGTAACAGGAGCATCCAG+TGG | + | chr2_3:65910283-65910302 | Msa0306790:intron | 50.0% |
| !! | ACAGGAGCATCCAGTGGTAT+TGG | + | chr2_3:65910289-65910308 | Msa0306790:intron | 50.0% |
| ATGCGTGTTCTTGCTTTGCG+TGG | + | chr2_3:65910322-65910341 | Msa0306790:CDS | 50.0% | |
| GCGTGGTGTCCATGTGATTA+TGG | + | chr2_3:65910339-65910358 | Msa0306790:CDS | 50.0% | |
| CTTCGAGTGTGCTCTTCTCA+AGG | - | chr2_3:65910752-65910771 | None:intergenic | 50.0% | |
| ! | CTTGAGAAGAGCACACTCGA+AGG | + | chr2_3:65910750-65910769 | Msa0306790:intron | 50.0% |
| AGGTCTCAAGCCTAACCACT+AGG | + | chr2_3:65910770-65910789 | Msa0306790:intron | 50.0% | |
| TAACCACTAGGCAAACCGCT+GGG | + | chr2_3:65910782-65910801 | Msa0306790:intron | 50.0% | |
| !! | TCTTGATCAGGATGATGGGG+TGG | + | chr2_3:65911790-65911809 | Msa0306790:intron | 50.0% |
| CACCAATCTTTCCCGCCATA+TGG | + | chr2_3:65911850-65911869 | Msa0306790:CDS | 50.0% | |
| ! | ACCCATATGGCGGGAAAGAT+TGG | - | chr2_3:65911855-65911874 | None:intergenic | 50.0% |
| GTCAAGTACACCCATATGGC+GGG | - | chr2_3:65911864-65911883 | None:intergenic | 50.0% | |
| CGTCAAGTACACCCATATGG+CGG | - | chr2_3:65911865-65911884 | None:intergenic | 50.0% | |
| CGCCATATGGGTGTACTTGA+CGG | + | chr2_3:65911863-65911882 | Msa0306790:CDS | 50.0% | |
| GCTGCCCCCTACATTTAGAT+AGG | - | chr2_3:65912334-65912353 | None:intergenic | 50.0% | |
| AGCATTGCACCCACAAGTGA+AGG | + | chr2_3:65912369-65912388 | Msa0306790:CDS | 50.0% | |
| GCATTGCACCCACAAGTGAA+GGG | + | chr2_3:65912370-65912389 | Msa0306790:CDS | 50.0% | |
| CGCTAACTCCCTTCACTTGT+GGG | - | chr2_3:65912381-65912400 | None:intergenic | 50.0% | |
| CCACAAGTGAAGGGAGTTAG+CGG | + | chr2_3:65912379-65912398 | Msa0306790:CDS | 50.0% | |
| CAGCGGTTTGCCTAGTGGTT+AGG | - | chr2_3:65910783-65910802 | None:intergenic | 55.0% | |
| CTAACCACTAGGCAAACCGC+TGG | + | chr2_3:65910781-65910800 | Msa0306790:intron | 55.0% | |
| AACCACTAGGCAAACCGCTG+GGG | + | chr2_3:65910783-65910802 | Msa0306790:intron | 55.0% | |
| CCGCTAACTCCCTTCACTTG+TGG | - | chr2_3:65912382-65912401 | None:intergenic | 55.0% | |
| ! | ACAGGGAAGGGACGCTGATT+TGG | + | chr2_3:65912441-65912460 | Msa0306790:CDS | 55.0% |
| ACCACTAGGCAAACCGCTGG+GGG | + | chr2_3:65910784-65910803 | Msa0306790:intron | 60.0% | |
| ACCCCCAGCGGTTTGCCTAG+TGG | - | chr2_3:65910788-65910807 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 65909520 | 65912510 | 65909520 | ID=Msa0306790;Name=Msa0306790 |
| chr2_3 | mRNA | 65909520 | 65912510 | 65909520 | ID=Msa0306790-mRNA-1;Parent=Msa0306790;Name=Msa0306790-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0.75|0.55|1|1|1|9|0|359 |
| chr2_3 | exon | 65909520 | 65909633 | 65909520 | ID=Msa0306790-mRNA-1:exon:21974;Parent=Msa0306790-mRNA-1 |
| chr2_3 | exon | 65909827 | 65909950 | 65909827 | ID=Msa0306790-mRNA-1:exon:21975;Parent=Msa0306790-mRNA-1 |
| chr2_3 | exon | 65910293 | 65910524 | 65910293 | ID=Msa0306790-mRNA-1:exon:21976;Parent=Msa0306790-mRNA-1 |
| chr2_3 | exon | 65911104 | 65911183 | 65911104 | ID=Msa0306790-mRNA-1:exon:21977;Parent=Msa0306790-mRNA-1 |
| chr2_3 | exon | 65911347 | 65911500 | 65911347 | ID=Msa0306790-mRNA-1:exon:21978;Parent=Msa0306790-mRNA-1 |
| chr2_3 | exon | 65911635 | 65911713 | 65911635 | ID=Msa0306790-mRNA-1:exon:21979;Parent=Msa0306790-mRNA-1 |
| chr2_3 | exon | 65911800 | 65911884 | 65911800 | ID=Msa0306790-mRNA-1:exon:21980;Parent=Msa0306790-mRNA-1 |
| chr2_3 | exon | 65912173 | 65912219 | 65912173 | ID=Msa0306790-mRNA-1:exon:21981;Parent=Msa0306790-mRNA-1 |
| chr2_3 | exon | 65912346 | 65912510 | 65912346 | ID=Msa0306790-mRNA-1:exon:21982;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65909520 | 65909633 | 65909520 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65909827 | 65909950 | 65909827 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65910293 | 65910524 | 65910293 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65911104 | 65911183 | 65911104 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65911347 | 65911500 | 65911347 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65911635 | 65911713 | 65911635 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65911800 | 65911884 | 65911800 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65912173 | 65912219 | 65912173 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| chr2_3 | CDS | 65912346 | 65912510 | 65912346 | ID=Msa0306790-mRNA-1:cds;Parent=Msa0306790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
