Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099230 | XP_003588960.2 | 98.214 | 392 | 7 | 0 | 1 | 392 | 1 | 392 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099230 | sp|O04278|GPA1_PEA | 97.396 | 384 | 10 | 0 | 9 | 392 | 1 | 384 | 0.0 | 776 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099230 | G7I9V0 | 98.214 | 392 | 7 | 0 | 1 | 392 | 1 | 392 | 0.0 | 796 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032020 | Msa0099230 | 0.825213 | 5.297972e-54 | -8.615850e-47 |
| Msa0053610 | Msa0099230 | 0.827623 | 1.412300e-54 | -8.615850e-47 |
| Msa0093850 | Msa0099230 | 0.819628 | 1.051001e-52 | -8.615850e-47 |
| Msa0098470 | Msa0099230 | 0.895952 | 5.876735e-76 | -8.615850e-47 |
| Msa0099230 | Msa0130110 | 0.800298 | 1.538995e-48 | -8.615850e-47 |
| Msa0099230 | Msa0148010 | 0.942237 | 1.026091e-101 | -8.615850e-47 |
| Msa0099230 | Msa0152870 | 0.806913 | 6.530520e-50 | -8.615850e-47 |
| Msa0099230 | Msa0209140 | 0.809573 | 1.769773e-50 | -8.615850e-47 |
| Msa0099230 | Msa0263780 | 0.803432 | 3.495310e-49 | -8.615850e-47 |
| Msa0099230 | Msa0288620 | 0.817021 | 4.093340e-52 | -8.615850e-47 |
| Msa0099230 | Msa0301520 | 0.806076 | 9.802955e-50 | -8.615850e-47 |
| Msa0099230 | Msa0307270 | 0.800462 | 1.425260e-48 | -8.615850e-47 |
| Msa0099230 | Msa0339020 | 0.818644 | 1.759801e-52 | -8.615850e-47 |
| Msa0099230 | Msa0341690 | 0.811183 | 7.950478e-51 | -8.615850e-47 |
| Msa0099230 | Msa0435370 | 0.860249 | 2.355498e-63 | -8.615850e-47 |
| Msa0099230 | Msa0435420 | 0.851830 | 6.873157e-61 | -8.615850e-47 |
| Msa0099230 | Msa0435570 | 0.860724 | 1.691558e-63 | -8.615850e-47 |
| Msa0099230 | Msa0508180 | 0.802570 | 5.269275e-49 | -8.615850e-47 |
| Msa0099230 | Msa0519760 | 0.843463 | 1.379513e-58 | -8.615850e-47 |
| Msa0099230 | Msa0519810 | 0.841494 | 4.594287e-58 | -8.615850e-47 |
| Msa0099230 | Msa0519840 | 0.848081 | 7.694603e-60 | -8.615850e-47 |
| Msa0099230 | Msa0706760 | 0.838980 | 2.082995e-57 | -8.615850e-47 |
| Msa0099230 | Msa0810930 | 0.807093 | 5.981954e-50 | -8.615850e-47 |
| Msa0099230 | Msa0945190 | 0.804396 | 2.203868e-49 | -8.615850e-47 |
| Msa0099230 | Msa1074890 | 0.802182 | 6.333630e-49 | -8.615850e-47 |
| Msa0099230 | Msa1085330 | 0.818045 | 2.405955e-52 | -8.615850e-47 |
| Msa0099230 | Msa1165090 | 0.803612 | 3.208679e-49 | -8.615850e-47 |
| Msa0099230 | Msa1206230 | 0.851056 | 1.137563e-60 | -8.615850e-47 |
| Msa0099230 | Msa1297970 | 0.850678 | 1.453416e-60 | -8.615850e-47 |
| Msa0099230 | Msa1348090 | 0.807365 | 5.238539e-50 | -8.615850e-47 |
| Msa0099230 | Msa1373170 | 0.839429 | 1.592788e-57 | -8.615850e-47 |
| Msa0099230 | Msa1385110 | 0.970886 | 2.645871e-132 | -8.615850e-47 |
| Msa0099230 | Msa1412000 | 0.811015 | 8.649154e-51 | -8.615850e-47 |
| Msa0099230 | Msa1414390 | 0.804694 | 1.910467e-49 | -8.615850e-47 |
| Msa0099230 | Msa1427110 | 0.852285 | 5.104807e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099230 | MtrunA17_Chr1g0151141 | 96.429 | 392 | 6 | 1 | 9 | 392 | 1 | 392 | 0.0 | 773 |
| Msa0099230 | MtrunA17_Chr3g0136391 | 68.586 | 191 | 47 | 4 | 123 | 306 | 10 | 194 | 1.11e-86 | 263 |
| Msa0099230 | MtrunA17_Chr5g0410081 | 33.249 | 394 | 203 | 14 | 44 | 382 | 422 | 810 | 1.92e-52 | 187 |
| Msa0099230 | MtrunA17_Chr6g0479291 | 30.026 | 383 | 216 | 11 | 47 | 382 | 524 | 901 | 5.33e-48 | 175 |
| Msa0099230 | MtrunA17_Chr8g0374061 | 30.273 | 403 | 212 | 14 | 47 | 382 | 375 | 775 | 1.08e-43 | 162 |
| Msa0099230 | MtrunA17_Chr5g0402991 | 33.019 | 318 | 171 | 10 | 47 | 322 | 497 | 814 | 1.90e-42 | 159 |
| Msa0099230 | MtrunA17_Chr1g0162561 | 28.198 | 383 | 209 | 11 | 45 | 361 | 459 | 841 | 2.79e-39 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0099230 | AT2G26300.2 | 86.458 | 384 | 51 | 1 | 9 | 392 | 1 | 383 | 0.0 | 692 |
| Msa0099230 | AT2G26300.1 | 86.458 | 384 | 51 | 1 | 9 | 392 | 1 | 383 | 0.0 | 692 |
| Msa0099230 | AT1G31930.5 | 32.995 | 394 | 203 | 12 | 45 | 382 | 428 | 816 | 1.38e-54 | 193 |
| Msa0099230 | AT1G31930.2 | 32.995 | 394 | 203 | 12 | 45 | 382 | 428 | 816 | 1.38e-54 | 193 |
| Msa0099230 | AT1G31930.3 | 32.995 | 394 | 203 | 12 | 45 | 382 | 428 | 816 | 1.38e-54 | 193 |
| Msa0099230 | AT1G31930.6 | 32.995 | 394 | 203 | 12 | 45 | 382 | 428 | 816 | 1.38e-54 | 193 |
| Msa0099230 | AT1G31930.1 | 32.995 | 394 | 203 | 12 | 45 | 382 | 428 | 816 | 1.38e-54 | 193 |
| Msa0099230 | AT1G31930.4 | 32.995 | 394 | 203 | 12 | 45 | 382 | 428 | 816 | 1.38e-54 | 193 |
| Msa0099230 | AT2G23460.1 | 29.742 | 427 | 238 | 14 | 11 | 382 | 444 | 863 | 8.41e-43 | 160 |
| Msa0099230 | AT4G34390.1 | 28.319 | 339 | 204 | 9 | 44 | 344 | 459 | 796 | 1.05e-33 | 133 |
| Msa0099230 | AT4G34390.2 | 28.173 | 323 | 186 | 9 | 44 | 344 | 459 | 757 | 7.24e-31 | 125 |
Find 92 sgRNAs with CRISPR-Local
Find 439 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCCACATTCATCTTTAA+AGG | 0.198789 | 1_3:+5331914 | Msa0099230:three_prime_UTR |
| TTCTTGTTCTTGTTTGGTTT+TGG | 0.227152 | 1_3:-5325055 | None:intergenic |
| GAAGAGGTGAGATCAGATTT+TGG | 0.248220 | 1_3:+5331784 | Msa0099230:three_prime_UTR |
| GGCGAAAAGTTATCAGAAAT+TGG | 0.258807 | 1_3:+5328106 | Msa0099230:CDS |
| TTTCTATCTATGTGTCTTGT+TGG | 0.278728 | 1_3:-5324959 | None:intergenic |
| CGCTATCCGGAGCAGTGTTC+TGG | 0.283333 | 1_3:-5331589 | None:intergenic |
| GGCTTGTTCTTGTTCTTGTT+TGG | 0.319739 | 1_3:-5325061 | None:intergenic |
| TGTTATATCCAGTGAAAATA+AGG | 0.321185 | 1_3:+5327906 | Msa0099230:CDS |
| GTGGAAGGATGCTGCAATTC+AGG | 0.324847 | 1_3:+5328186 | Msa0099230:CDS |
| ATGTCTTCTTCACAACCTTC+TGG | 0.325401 | 1_3:-5331652 | None:intergenic |
| AGATTGTACCCATTATTTCA+TGG | 0.342997 | 1_3:+5328359 | Msa0099230:CDS |
| ATGTTCAATCTCTTGTTTCC+CGG | 0.350590 | 1_3:-5330748 | None:intergenic |
| AGAGAAATGAGAGGAGAAAA+TGG | 0.351357 | 1_3:+5329945 | Msa0099230:CDS |
| TCTTACCTGCTTAAATATAG+TGG | 0.358453 | 1_3:-5327501 | None:intergenic |
| TATCCCTCTTATATAACATA+TGG | 0.369849 | 1_3:-5331746 | None:intergenic |
| CCTCAAAACATTGTTGCTTC+AGG | 0.378528 | 1_3:-5330398 | None:intergenic |
| ATTTCTTGTAAAATCTTTGT+TGG | 0.379713 | 1_3:+5331856 | Msa0099230:three_prime_UTR |
| ATAAATAATAAATTACGATT+AGG | 0.391190 | 1_3:-5325263 | None:intergenic |
| AGAGCGCCGAAAGGTGATTC+TGG | 0.395079 | 1_3:-5325087 | None:intergenic |
| TCTCCACATTCATCTTTAAA+GGG | 0.398409 | 1_3:+5331915 | Msa0099230:three_prime_UTR |
| GACTACCAGCCACTTTCAAC+CGG | 0.403399 | 1_3:+5330729 | Msa0099230:CDS |
| ATGAAATAATGGGTACAATC+TGG | 0.415906 | 1_3:-5328357 | None:intergenic |
| CATATTTGAGAAGAAGATCC+TGG | 0.428496 | 1_3:+5330594 | Msa0099230:CDS |
| GCCTTACCAGAATCACCTTT+CGG | 0.445712 | 1_3:+5325081 | Msa0099230:five_prime_UTR |
| TAAATCTTGGATACCTTTGT+TGG | 0.446321 | 1_3:-5328417 | None:intergenic |
| GAGACGGAGGAATCTCTTTG+AGG | 0.457860 | 1_3:+5331697 | Msa0099230:CDS |
| AAAAGTAGGTTACCTGAAAA+GGG | 0.470437 | 1_3:-5325436 | None:intergenic |
| CGGAGGAATCTCTTTGAGGC+TGG | 0.474033 | 1_3:+5331701 | Msa0099230:CDS |
| CAGTGTTGGCATCATTATAA+CGG | 0.475539 | 1_3:-5326253 | None:intergenic |
| AATGGGTACAATCTGGAACT+TGG | 0.478299 | 1_3:-5328350 | None:intergenic |
| ATAACATATGGTCCACTCAT+TGG | 0.479611 | 1_3:-5331734 | None:intergenic |
| AACACGCGGTCTACGCTATC+CGG | 0.486792 | 1_3:-5331602 | None:intergenic |
| GTTTCCCGGTTGAAAGTGGC+TGG | 0.493695 | 1_3:-5330734 | None:intergenic |
| CAATTATGTGTGTGAGCTCA+AGG | 0.497947 | 1_3:+5324880 | Msa0099230:five_prime_UTR |
| TGGACCATATGTTATATAAG+AGG | 0.500754 | 1_3:+5331742 | Msa0099230:three_prime_UTR |
| GTGTTGTAGAGATTCAGTTC+AGG | 0.503046 | 1_3:+5328700 | Msa0099230:CDS |
| AAATGGATCCATCTGTTTGA+AGG | 0.505547 | 1_3:+5329962 | Msa0099230:CDS |
| ACCGCGTGTTTAAGATATAT+AGG | 0.512353 | 1_3:+5331615 | Msa0099230:CDS |
| ATGGTGGTGGTTGTTGATAC+TGG | 0.514497 | 1_3:-5325168 | None:intergenic |
| TGAAAACAAGAACAGAATGA+TGG | 0.514701 | 1_3:+5330350 | Msa0099230:CDS |
| GAAGTGTGTACATGAATTAG+TGG | 0.519583 | 1_3:-5326154 | None:intergenic |
| TCTTGTTTCCCGGTTGAAAG+TGG | 0.524400 | 1_3:-5330738 | None:intergenic |
| AAGAATAGAGTTAGAAACAA+AGG | 0.526659 | 1_3:+5326395 | Msa0099230:CDS |
| TAGACATTGGCATGAATGAC+TGG | 0.527717 | 1_3:-5327653 | None:intergenic |
| GAAGTCCACTATATTTAAGC+AGG | 0.528141 | 1_3:+5327496 | Msa0099230:CDS |
| AAAATCTTTGTTGGAGTGAG+TGG | 0.531296 | 1_3:+5331865 | Msa0099230:three_prime_UTR |
| CTTGCAAGAGTTCGTACCAC+TGG | 0.536698 | 1_3:+5328678 | Msa0099230:CDS |
| CTGAAACTCCTTCAAACAGA+TGG | 0.537712 | 1_3:-5329970 | None:intergenic |
| AACCACTCACATACATTAAG+CGG | 0.544573 | 1_3:-5330702 | None:intergenic |
| ATTCATGTACACACTTCGGC+TGG | 0.545716 | 1_3:+5326160 | Msa0099230:five_prime_UTR |
| ATTCAGAAACTTCTACTACT+AGG | 0.546573 | 1_3:+5326429 | Msa0099230:CDS |
| TCTTTGTTGGAGTGAGTGGA+TGG | 0.546756 | 1_3:+5331869 | Msa0099230:three_prime_UTR |
| TGATTACCCTCGTCTCACTA+AGG | 0.559747 | 1_3:+5328138 | Msa0099230:CDS |
| ATATTTCCAGAACACTGCTC+CGG | 0.563292 | 1_3:+5331583 | Msa0099230:CDS |
| TTCCCCTTTAAAGATGAATG+TGG | 0.563531 | 1_3:-5331918 | None:intergenic |
| GACCACTGCACTTGACCAGA+AGG | 0.565096 | 1_3:+5331637 | Msa0099230:CDS |
| GGACCATATGTTATATAAGA+GGG | 0.566403 | 1_3:+5331743 | Msa0099230:three_prime_UTR |
| CACAAGAAATAGAGAGTCTG+TGG | 0.566462 | 1_3:+5328167 | Msa0099230:CDS |
| CTCCACATTCATCTTTAAAG+GGG | 0.572440 | 1_3:+5331916 | Msa0099230:three_prime_UTR |
| TTCTAATTATGTTCCAACAA+AGG | 0.573279 | 1_3:+5328404 | Msa0099230:CDS |
| TGGAGTGAGTGGATGGAGAA+AGG | 0.573704 | 1_3:+5331876 | Msa0099230:three_prime_UTR |
| AACCTTCTGGTCAAGTGCAG+TGG | 0.574510 | 1_3:-5331639 | None:intergenic |
| GTTGGAGAAAACAAGAAAAG+TGG | 0.574561 | 1_3:+5329890 | Msa0099230:CDS |
| GCCGAAAGGTGATTCTGGTA+AGG | 0.578266 | 1_3:-5325082 | None:intergenic |
| ACCACTCACATACATTAAGC+GGG | 0.592242 | 1_3:-5330701 | None:intergenic |
| CATTGGCATGAATGACTGGT+AGG | 0.598977 | 1_3:-5327649 | None:intergenic |
| AGAAATAGAGAGTCTGTGGA+AGG | 0.613073 | 1_3:+5328171 | Msa0099230:CDS |
| ATTTCAAACTGGCTTTGATG+AGG | 0.616068 | 1_3:+5327610 | Msa0099230:CDS |
| GTCTATAGACTGTTTGATGT+CGG | 0.618439 | 1_3:+5329917 | Msa0099230:CDS |
| AACTTGGAGCTCATTACCAC+GGG | 0.623746 | 1_3:-5328334 | None:intergenic |
| AAGTGCAAAGAAAGTACAAG+TGG | 0.624278 | 1_3:+5324918 | Msa0099230:five_prime_UTR |
| TTGATGAGACTTTGAGACGG+AGG | 0.624845 | 1_3:+5331684 | Msa0099230:CDS |
| TGCAAAGAAAGTACAAGTGG+TGG | 0.625959 | 1_3:+5324921 | Msa0099230:five_prime_UTR |
| GCAAGTTCCTTAGTGAGACG+AGG | 0.629346 | 1_3:-5328145 | None:intergenic |
| TTGTTGATGAGACTTTGAGA+CGG | 0.630412 | 1_3:+5331681 | Msa0099230:CDS |
| ACTACCAGCCACTTTCAACC+GGG | 0.630833 | 1_3:+5330730 | Msa0099230:CDS |
| ACTAATTCATGTACACACTT+CGG | 0.631328 | 1_3:+5326156 | Msa0099230:five_prime_UTR |
| CAACACTGAAGAAAATGCAC+AGG | 0.631363 | 1_3:+5326268 | Msa0099230:CDS |
| TATAGACTGTTTGATGTCGG+TGG | 0.634857 | 1_3:+5329920 | Msa0099230:CDS |
| AAGTGTGTACATGAATTAGT+GGG | 0.635225 | 1_3:-5326153 | None:intergenic |
| TTTCTACAGTTACTTCACGA+CGG | 0.645455 | 1_3:+5327841 | Msa0099230:intron |
| ATTTCATGGAAAATTTGCAG+AGG | 0.651354 | 1_3:+5328373 | Msa0099230:CDS |
| TCCCGCTTAATGTATGTGAG+TGG | 0.652970 | 1_3:+5330700 | Msa0099230:CDS |
| CAAGTTCCTTAGTGAGACGA+GGG | 0.660424 | 1_3:-5328144 | None:intergenic |
| GAACTTGGAGCTCATTACCA+CGG | 0.660679 | 1_3:-5328335 | None:intergenic |
| ACAGGAACATACACACACAC+AGG | 0.665156 | 1_3:-5325015 | None:intergenic |
| GAAAAGTTATCAGAAATTGG+AGG | 0.672048 | 1_3:+5328109 | Msa0099230:CDS |
| CTGTAGGAAACATATGCCCG+TGG | 0.675146 | 1_3:+5328318 | Msa0099230:intron |
| CTGAATCTCTACAACACCAG+TGG | 0.677147 | 1_3:-5328694 | None:intergenic |
| TCCTATATATCTTAAACACG+CGG | 0.695502 | 1_3:-5331616 | None:intergenic |
| GGCTTGTTATGACCAATGAG+TGG | 0.702624 | 1_3:+5331722 | Msa0099230:exon |
| TCGGTGGCCAGAGAAATGAG+AGG | 0.733004 | 1_3:+5329936 | Msa0099230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAATAAATTACGATT+AGG | - | chr1_3:5325266-5325285 | None:intergenic | 10.0% |
| !!! | ATAAAAGTTTGTTAATTTTA+AGG | - | chr1_3:5325300-5325319 | None:intergenic | 10.0% |
| !!! | ATTTTATATATTTTTTTTGC+TGG | + | chr1_3:5325529-5325548 | Msa0099230:intron | 10.0% |
| !!! | TTTTATATATTTTTTTTGCT+GGG | + | chr1_3:5325530-5325549 | Msa0099230:intron | 10.0% |
| !!! | TTTTATATCAAAAATACATA+TGG | - | chr1_3:5327071-5327090 | None:intergenic | 10.0% |
| !! | ACAAAAAAAAAAAACATGTA+TGG | - | chr1_3:5325190-5325209 | None:intergenic | 15.0% |
| !!! | TTTATTGAGAAATTTTATCT+GGG | + | chr1_3:5325498-5325517 | Msa0099230:intron | 15.0% |
| !!! | TTTATATATTTTTTTTGCTG+GGG | + | chr1_3:5325531-5325550 | Msa0099230:intron | 15.0% |
| !!! | CTCTTTTTTTTTTTTTAACT+CGG | - | chr1_3:5326044-5326063 | None:intergenic | 15.0% |
| !!! | CAAAATTTTATTTGGAAAAA+TGG | - | chr1_3:5327198-5327217 | None:intergenic | 15.0% |
| !!! | ATAAAACTTTTATTTCAAAC+TGG | + | chr1_3:5327599-5327618 | Msa0099230:CDS | 15.0% |
| !! | ATAGACTATTATAAATCTAA+CGG | - | chr1_3:5329686-5329705 | None:intergenic | 15.0% |
| !!! | ATATTTTCAAAGTTGTAAAT+AGG | - | chr1_3:5329731-5329750 | None:intergenic | 15.0% |
| !! | TTAATGAAAAATTTCAAATG+CGG | - | chr1_3:5331252-5331271 | None:intergenic | 15.0% |
| !!! | AAAATATTTTTACAATGAAG+AGG | + | chr1_3:5331768-5331787 | Msa0099230:three_prime_UTR | 15.0% |
| !! | AAAAAAAAAAACATGTATGG+TGG | - | chr1_3:5325187-5325206 | None:intergenic | 20.0% |
| !! | TAAAATTTCTCAATAAAGGA+TGG | - | chr1_3:5325495-5325514 | None:intergenic | 20.0% |
| !! | CAGATAAAATTTCTCAATAA+AGG | - | chr1_3:5325499-5325518 | None:intergenic | 20.0% |
| !!! | CTTTATTGAGAAATTTTATC+TGG | + | chr1_3:5325497-5325516 | Msa0099230:intron | 20.0% |
| !!! | TTATATATTTTTTTTGCTGG+GGG | + | chr1_3:5325532-5325551 | Msa0099230:intron | 20.0% |
| !! | ATAAATAATACTCTCCAAAT+TGG | - | chr1_3:5325667-5325686 | None:intergenic | 20.0% |
| !!! | GAAGCTTTTTTTTTTTAACT+CGG | - | chr1_3:5325952-5325971 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAGCTTCGATT+AGG | + | chr1_3:5325956-5325975 | Msa0099230:intron | 20.0% |
| !!! | AGATGTTTTTTTTTGTTTTC+TGG | + | chr1_3:5326087-5326106 | Msa0099230:intron | 20.0% |
| !!! | AATTTTATTTGGAAAAATGG+AGG | - | chr1_3:5327195-5327214 | None:intergenic | 20.0% |
| !!! | TTTTTTAGTATTGTTGATTG+AGG | + | chr1_3:5327228-5327247 | Msa0099230:intron | 20.0% |
| !!! | TATTTGTATACTCATGTTTT+TGG | + | chr1_3:5327255-5327274 | Msa0099230:intron | 20.0% |
| !!! | ATTTGTATACTCATGTTTTT+GGG | + | chr1_3:5327256-5327275 | Msa0099230:intron | 20.0% |
| !!! | GCTTGCTTTTATTATTTTTA+TGG | + | chr1_3:5327419-5327438 | Msa0099230:intron | 20.0% |
| !! | CACTTATTTAAACTTATCAA+TGG | + | chr1_3:5327444-5327463 | Msa0099230:intron | 20.0% |
| !!! | CAAATTTTCCATGAAATAAT+GGG | - | chr1_3:5328370-5328389 | None:intergenic | 20.0% |
| !!! | ATGTATTTAGAATACTATGT+GGG | - | chr1_3:5328980-5328999 | None:intergenic | 20.0% |
| !!! | AATTTCAAGTTTGACAATAA+AGG | + | chr1_3:5329029-5329048 | Msa0099230:intron | 20.0% |
| !!! | TTTTTTTTTTGTTGAAACGA+TGG | + | chr1_3:5329480-5329499 | Msa0099230:intron | 20.0% |
| !! | TAGACTATTATAAATCTAAC+GGG | - | chr1_3:5329685-5329704 | None:intergenic | 20.0% |
| !! | CATATTAAAATAGAGTCAAA+TGG | - | chr1_3:5330034-5330053 | None:intergenic | 20.0% |
| !!! | TAACATCTAAGACAATTATA+TGG | + | chr1_3:5330438-5330457 | Msa0099230:intron | 20.0% |
| !! | TTTGGATAAACAACTTAATT+TGG | + | chr1_3:5330845-5330864 | Msa0099230:intron | 20.0% |
| !!! | TAATATAACATAGTCAGTTT+TGG | + | chr1_3:5331138-5331157 | Msa0099230:intron | 20.0% |
| !! | ATTTCTTGTAAAATCTTTGT+TGG | + | chr1_3:5331856-5331875 | Msa0099230:three_prime_UTR | 20.0% |
| ! | AATGAGGGAATGAAAAAAAT+GGG | - | chr1_3:5325124-5325143 | None:intergenic | 25.0% |
| ! | AAATGAGGGAATGAAAAAAA+TGG | - | chr1_3:5325125-5325144 | None:intergenic | 25.0% |
| ! | GTAAAAAATGAAAAAGAACG+AGG | - | chr1_3:5325149-5325168 | None:intergenic | 25.0% |
| ! | GAATGCAACATAAAAAAAGT+AGG | - | chr1_3:5325453-5325472 | None:intergenic | 25.0% |
| ! | TAGCAATTTAGCATAATATC+TGG | + | chr1_3:5325589-5325608 | Msa0099230:intron | 25.0% |
| ! | AAAAAAAGTTTGCATGCTTA+TGG | + | chr1_3:5325729-5325748 | Msa0099230:intron | 25.0% |
| !!! | TGGTTTTAGAATAATTTGCA+AGG | + | chr1_3:5325749-5325768 | Msa0099230:intron | 25.0% |
| !!! | GGTTTTAGAATAATTTGCAA+GGG | + | chr1_3:5325750-5325769 | Msa0099230:intron | 25.0% |
| !!! | TTGTTTTTCTTCCTTTTGTT+TGG | + | chr1_3:5325775-5325794 | Msa0099230:intron | 25.0% |
| !!! | TTTTTTTTTAACTCGGTATC+CGG | - | chr1_3:5325945-5325964 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTAACTCGGTATC+CGG | - | chr1_3:5325945-5325964 | None:intergenic | 25.0% |
| !! | TGTTTTGTAGCAGAAAAAAT+GGG | + | chr1_3:5326209-5326228 | Msa0099230:CDS | 25.0% |
| !!! | GAAAGTGCTATATTTGATTA+AGG | + | chr1_3:5326339-5326358 | Msa0099230:intron | 25.0% |
| ! | AAGAATAGAGTTAGAAACAA+AGG | + | chr1_3:5326395-5326414 | Msa0099230:CDS | 25.0% |
| !! | TACTACTAGGTACATTTTAT+TGG | + | chr1_3:5326442-5326461 | Msa0099230:intron | 25.0% |
| ! | CTAATTCAATCCTACTAAAT+CGG | - | chr1_3:5326678-5326697 | None:intergenic | 25.0% |
| ! | CTGCAATGTATTATATAAGT+GGG | + | chr1_3:5326834-5326853 | Msa0099230:intron | 25.0% |
| !!! | TAAGGTGTTTTACTATACTA+TGG | + | chr1_3:5327006-5327025 | Msa0099230:intron | 25.0% |
| !! | CTCATCTGCAAAATTTTATT+TGG | - | chr1_3:5327206-5327225 | None:intergenic | 25.0% |
| !! | TTTTATTGTCTGATAGACAT+TGG | - | chr1_3:5327669-5327688 | None:intergenic | 25.0% |
| ! | TGTTATATCCAGTGAAAATA+AGG | + | chr1_3:5327906-5327925 | Msa0099230:CDS | 25.0% |
| ! | ACAAAAAACCTACATACAAT+TGG | - | chr1_3:5327988-5328007 | None:intergenic | 25.0% |
| !!! | TTTTGTTTGTTTGTTTTGTG+TGG | + | chr1_3:5328002-5328021 | Msa0099230:intron | 25.0% |
| !! | GCAAATTTTCCATGAAATAA+TGG | - | chr1_3:5328371-5328390 | None:intergenic | 25.0% |
| ! | TTCTAATTATGTTCCAACAA+AGG | + | chr1_3:5328404-5328423 | Msa0099230:CDS | 25.0% |
| ! | AAATTGTATAACAGAGTGAA+AGG | - | chr1_3:5328643-5328662 | None:intergenic | 25.0% |
| ! | ATATCAAGAAGAGATCAAAA+TGG | - | chr1_3:5328796-5328815 | None:intergenic | 25.0% |
| !!! | TGCTTTTTACTCGAAAAAAA+TGG | + | chr1_3:5328815-5328834 | Msa0099230:intron | 25.0% |
| ! | AAAGAAAGTGAATAAATGAC+AGG | - | chr1_3:5328869-5328888 | None:intergenic | 25.0% |
| !! | CATGTATTTAGAATACTATG+TGG | - | chr1_3:5328981-5329000 | None:intergenic | 25.0% |
| !! | GAATTTGAAGTTTATGATTC+AGG | + | chr1_3:5329225-5329244 | Msa0099230:intron | 25.0% |
| ! | ATGATCGTTTCTATAAATTC+TGG | + | chr1_3:5329404-5329423 | Msa0099230:intron | 25.0% |
| !! | TTATTTATAACAAGAGTGCA+CGG | - | chr1_3:5329613-5329632 | None:intergenic | 25.0% |
| !! | CCAAAAGAAAAACTTTTAAC+TGG | - | chr1_3:5330146-5330165 | None:intergenic | 25.0% |
| !! | CCAGTTAAAAGTTTTTCTTT+TGG | + | chr1_3:5330143-5330162 | Msa0099230:intron | 25.0% |
| ! | ATTATATGGAAAGTTTCCTA+TGG | + | chr1_3:5330452-5330471 | Msa0099230:intron | 25.0% |
| ! | TTCACTAACAGTTAAGATTT+CGG | + | chr1_3:5330505-5330524 | Msa0099230:intron | 25.0% |
| ! | AGTAACTTATTTATAGCCTT+AGG | + | chr1_3:5330782-5330801 | Msa0099230:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+GGG | - | chr1_3:5330843-5330862 | None:intergenic | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1_3:5330844-5330863 | None:intergenic | 25.0% |
| ! | AAGCTATTCTGAATAGTTTA+TGG | + | chr1_3:5330973-5330992 | Msa0099230:intron | 25.0% |
| ! | TCTCAGTCAAAATAAGTTAT+TGG | - | chr1_3:5331339-5331358 | None:intergenic | 25.0% |
| ! | AATCATGACGTAATTTATCA+TGG | - | chr1_3:5331431-5331450 | None:intergenic | 25.0% |
| ! | GTTTGTGAAGAAAAAATTTG+AGG | + | chr1_3:5331556-5331575 | Msa0099230:CDS | 25.0% |
| ! | TATCCCTCTTATATAACATA+TGG | - | chr1_3:5331749-5331768 | None:intergenic | 25.0% |
| TTTCTATCTATGTGTCTTGT+TGG | - | chr1_3:5324962-5324981 | None:intergenic | 30.0% | |
| !! | TTCTTGTTCTTGTTTGGTTT+TGG | - | chr1_3:5325058-5325077 | None:intergenic | 30.0% |
| ATGAGGGAATGAAAAAAATG+GGG | - | chr1_3:5325123-5325142 | None:intergenic | 30.0% | |
| AAAAAGAACGAGGAAAATGA+GGG | - | chr1_3:5325139-5325158 | None:intergenic | 30.0% | |
| AAAAAAAACATGTATGGTGG+TGG | - | chr1_3:5325184-5325203 | None:intergenic | 30.0% | |
| ! | AGAGTTTTTGAATGTAGTGT+AGG | - | chr1_3:5325227-5325246 | None:intergenic | 30.0% |
| AAAAGTAGGTTACCTGAAAA+GGG | - | chr1_3:5325439-5325458 | None:intergenic | 30.0% | |
| AAAAAGTAGGTTACCTGAAA+AGG | - | chr1_3:5325440-5325459 | None:intergenic | 30.0% | |
| !! | TGTTTTTGTGATTTTGCGTT+TGG | + | chr1_3:5325633-5325652 | Msa0099230:intron | 30.0% |
| GTTAAGTTTGCATGCTTATT+TGG | + | chr1_3:5325703-5325722 | Msa0099230:intron | 30.0% | |
| GCTAAATATCTCCAAACAAA+AGG | - | chr1_3:5325789-5325808 | None:intergenic | 30.0% | |
| !! | AAACATCTGCTACTTTAACT+CGG | - | chr1_3:5326075-5326094 | None:intergenic | 30.0% |
| AAGTGTGTACATGAATTAGT+GGG | - | chr1_3:5326156-5326175 | None:intergenic | 30.0% | |
| ACTAATTCATGTACACACTT+CGG | + | chr1_3:5326156-5326175 | Msa0099230:five_prime_UTR | 30.0% | |
| ! | GTGTTTTGTAGCAGAAAAAA+TGG | + | chr1_3:5326208-5326227 | Msa0099230:CDS | 30.0% |
| ATTCAGAAACTTCTACTACT+AGG | + | chr1_3:5326429-5326448 | Msa0099230:CDS | 30.0% | |
| !! | TCTTAGTCTTATATGCTAAG+TGG | + | chr1_3:5326480-5326499 | Msa0099230:intron | 30.0% |
| ATACATTGTAGATTCCAACA+TGG | - | chr1_3:5326536-5326555 | None:intergenic | 30.0% | |
| !! | TACTAAATCGGTTTGTAAGA+CGG | - | chr1_3:5326666-5326685 | None:intergenic | 30.0% |
| CGATTTAGTAGGATTGAATT+AGG | + | chr1_3:5326676-5326695 | Msa0099230:intron | 30.0% | |
| ! | AAAATCTAGATGTCCAGTTT+TGG | + | chr1_3:5326765-5326784 | Msa0099230:intron | 30.0% |
| CCACTTATATAATACATTGC+AGG | - | chr1_3:5326836-5326855 | None:intergenic | 30.0% | |
| CCTGCAATGTATTATATAAG+TGG | + | chr1_3:5326833-5326852 | Msa0099230:intron | 30.0% | |
| !! | TAATGAGAGCATTGAATGTT+TGG | - | chr1_3:5326940-5326959 | None:intergenic | 30.0% |
| !!! | TTTTTTTTCCGTCTCCATTA+TGG | + | chr1_3:5326960-5326979 | Msa0099230:intron | 30.0% |
| !!! | ATACTCATGTTTTTGGGATT+TGG | + | chr1_3:5327262-5327281 | Msa0099230:intron | 30.0% |
| ! | TTTGGAATAACTGATCAAAC+AGG | + | chr1_3:5327280-5327299 | Msa0099230:intron | 30.0% |
| ATGAGTATGCAATTATTTGC+AGG | - | chr1_3:5327361-5327380 | None:intergenic | 30.0% | |
| !!! | TATCAATGGTCCCTTTTTTT+AGG | + | chr1_3:5327458-5327477 | Msa0099230:intron | 30.0% |
| TCTTACCTGCTTAAATATAG+TGG | - | chr1_3:5327504-5327523 | None:intergenic | 30.0% | |
| ! | CAATAAAAGTACGCAATACT+TGG | + | chr1_3:5327681-5327700 | Msa0099230:intron | 30.0% |
| AAAACTGTAACTACAAACAG+TGG | - | chr1_3:5327757-5327776 | None:intergenic | 30.0% | |
| ! | GTTTTCTGTGAATTGTGTTT+TGG | + | chr1_3:5327772-5327791 | Msa0099230:intron | 30.0% |
| CGAAAAATCAACATCATTCT+GGG | - | chr1_3:5327881-5327900 | None:intergenic | 30.0% | |
| TCGAAAAATCAACATCATTC+TGG | - | chr1_3:5327882-5327901 | None:intergenic | 30.0% | |
| ATATCCAGTGAAAATAAGGT+AGG | + | chr1_3:5327910-5327929 | Msa0099230:intron | 30.0% | |
| GAAAAGTTATCAGAAATTGG+AGG | + | chr1_3:5328109-5328128 | Msa0099230:CDS | 30.0% | |
| !! | ATGAAATAATGGGTACAATC+TGG | - | chr1_3:5328360-5328379 | None:intergenic | 30.0% |
| AGATTGTACCCATTATTTCA+TGG | + | chr1_3:5328359-5328378 | Msa0099230:CDS | 30.0% | |
| ATTTCATGGAAAATTTGCAG+AGG | + | chr1_3:5328373-5328392 | Msa0099230:CDS | 30.0% | |
| TAAATCTTGGATACCTTTGT+TGG | - | chr1_3:5328420-5328439 | None:intergenic | 30.0% | |
| AAGAATAGTGTGCTAAATCT+TGG | - | chr1_3:5328433-5328452 | None:intergenic | 30.0% | |
| ATTTCATATCGAAAGTTCCA+TGG | + | chr1_3:5328539-5328558 | Msa0099230:intron | 30.0% | |
| TTCCATGGTTTAAGTATGTT+AGG | + | chr1_3:5328554-5328573 | Msa0099230:intron | 30.0% | |
| TCACTCTGTTATACAATTTC+AGG | + | chr1_3:5328644-5328663 | Msa0099230:intron | 30.0% | |
| ATTACTCAGAAACGCTTATT+CGG | + | chr1_3:5328758-5328777 | Msa0099230:intron | 30.0% | |
| AGGAAACTAAGTAATACCAA+AGG | - | chr1_3:5328849-5328868 | None:intergenic | 30.0% | |
| !! | TAAAACTCCTTTTTAGTCAG+AGG | - | chr1_3:5328934-5328953 | None:intergenic | 30.0% |
| CAAGTTTGACAATAAAGGAT+TGG | + | chr1_3:5329034-5329053 | Msa0099230:intron | 30.0% | |
| ! | TTCTTCTTTTGTCTTTTGTC+TGG | + | chr1_3:5329159-5329178 | Msa0099230:intron | 30.0% |
| TTGTCGTGTGTTTATGATTA+AGG | + | chr1_3:5329186-5329205 | Msa0099230:intron | 30.0% | |
| TGTTTATGATTAAGGTTGCT+GGG | + | chr1_3:5329194-5329213 | Msa0099230:intron | 30.0% | |
| TGAATTCTTTGGCAAGATTT+GGG | + | chr1_3:5329263-5329282 | Msa0099230:intron | 30.0% | |
| TCGTTTCTATAAATTCTGGT+AGG | + | chr1_3:5329408-5329427 | Msa0099230:intron | 30.0% | |
| TTCTATAAATTCTGGTAGGA+AGG | + | chr1_3:5329412-5329431 | Msa0099230:intron | 30.0% | |
| TAAGAAGTGAAGCGATAAAA+AGG | - | chr1_3:5329554-5329573 | None:intergenic | 30.0% | |
| ! | TATTTATAACAAGAGTGCAC+GGG | - | chr1_3:5329612-5329631 | None:intergenic | 30.0% |
| ACAATTATGTTGTTGTGCAA+GGG | - | chr1_3:5329844-5329863 | None:intergenic | 30.0% | |
| !!! | TTTTCTTGTTTTCTCCAACA+GGG | - | chr1_3:5329889-5329908 | None:intergenic | 30.0% |
| TAATTGCGCAACAAATCAAA+AGG | + | chr1_3:5330111-5330130 | Msa0099230:intron | 30.0% | |
| TATTTCATGCCAGTACTTTA+AGG | + | chr1_3:5330198-5330217 | Msa0099230:intron | 30.0% | |
| ATTTCATGCCAGTACTTTAA+GGG | + | chr1_3:5330199-5330218 | Msa0099230:intron | 30.0% | |
| ! | AATTTGTTCCCTTAAAGTAC+TGG | - | chr1_3:5330210-5330229 | None:intergenic | 30.0% |
| !! | AAAAAGTGTTTGATCATACC+TGG | - | chr1_3:5330325-5330344 | None:intergenic | 30.0% |
| !! | GTATGATCAAACACTTTTTG+AGG | + | chr1_3:5330326-5330345 | Msa0099230:CDS | 30.0% |
| TGAAAACAAGAACAGAATGA+TGG | + | chr1_3:5330350-5330369 | Msa0099230:CDS | 30.0% | |
| !! | AGACAAAAGAACTTTTTGAG+TGG | + | chr1_3:5330373-5330392 | Msa0099230:CDS | 30.0% |
| !!! | GACAAAAGAACTTTTTGAGT+GGG | + | chr1_3:5330374-5330393 | Msa0099230:CDS | 30.0% |
| TCTTAACTGTTAGTGAAGAA+TGG | - | chr1_3:5330502-5330521 | None:intergenic | 30.0% | |
| AAAAGAGAAAGACATGAGAT+AGG | - | chr1_3:5330531-5330550 | None:intergenic | 30.0% | |
| CTTGTTCAAAAATAGCATGA+AGG | - | chr1_3:5330569-5330588 | None:intergenic | 30.0% | |
| ! | TCTAATGTTTTGTATTGTGC+AGG | + | chr1_3:5330677-5330696 | Msa0099230:intron | 30.0% |
| ! | GCATTAGTTTACAAATGCTT+AGG | - | chr1_3:5331294-5331313 | None:intergenic | 30.0% |
| TAATTCCTATGAACTTGTAG+TGG | - | chr1_3:5331477-5331496 | None:intergenic | 30.0% | |
| ! | ATGGACAAACTCTTTATTTC+AGG | + | chr1_3:5331534-5331553 | Msa0099230:intron | 30.0% |
| TCCTATATATCTTAAACACG+CGG | - | chr1_3:5331619-5331638 | None:intergenic | 30.0% | |
| TGGACCATATGTTATATAAG+AGG | + | chr1_3:5331742-5331761 | Msa0099230:three_prime_UTR | 30.0% | |
| GGACCATATGTTATATAAGA+GGG | + | chr1_3:5331743-5331762 | Msa0099230:three_prime_UTR | 30.0% | |
| !! | TTTTGGGTATACTAGAAGTA+AGG | + | chr1_3:5331801-5331820 | Msa0099230:three_prime_UTR | 30.0% |
| ATCTCCACATTCATCTTTAA+AGG | + | chr1_3:5331914-5331933 | Msa0099230:three_prime_UTR | 30.0% | |
| TCTCCACATTCATCTTTAAA+GGG | + | chr1_3:5331915-5331934 | Msa0099230:three_prime_UTR | 30.0% | |
| ! | AAGTGCAAAGAAAGTACAAG+TGG | + | chr1_3:5324918-5324937 | Msa0099230:five_prime_UTR | 35.0% |
| GTCAAAGATTGGAAAAAGAC+AGG | - | chr1_3:5325036-5325055 | None:intergenic | 35.0% | |
| !!! | GTTTGGTTTTGGTCAAAGAT+TGG | - | chr1_3:5325047-5325066 | None:intergenic | 35.0% |
| GAAAAAGAACGAGGAAAATG+AGG | - | chr1_3:5325140-5325159 | None:intergenic | 35.0% | |
| ! | TTGTGATTTTGCGTTTGGTT+AGG | + | chr1_3:5325638-5325657 | Msa0099230:intron | 35.0% |
| ! | TGTGATTTTGCGTTTGGTTA+GGG | + | chr1_3:5325639-5325658 | Msa0099230:intron | 35.0% |
| ! | GCTATGCTAGTTCTCTTATT+AGG | + | chr1_3:5326120-5326139 | Msa0099230:intron | 35.0% |
| GAAGTGTGTACATGAATTAG+TGG | - | chr1_3:5326157-5326176 | None:intergenic | 35.0% | |
| !! | CAGTGTTGGCATCATTATAA+CGG | - | chr1_3:5326256-5326275 | None:intergenic | 35.0% |
| AAAGTTGAACTTTGCCATGT+TGG | + | chr1_3:5326519-5326538 | Msa0099230:intron | 35.0% | |
| !! | ACTAAATCGGTTTGTAAGAC+GGG | - | chr1_3:5326665-5326684 | None:intergenic | 35.0% |
| ! | GTCTTACAAACCGATTTAGT+AGG | + | chr1_3:5326665-5326684 | Msa0099230:intron | 35.0% |
| AGGTCATTTCTCATCTAATG+TGG | - | chr1_3:5326816-5326835 | None:intergenic | 35.0% | |
| ACTTATGAACTCTCGGTATT+CGG | - | chr1_3:5326892-5326911 | None:intergenic | 35.0% | |
| ACAGACTACTTATGAACTCT+CGG | - | chr1_3:5326899-5326918 | None:intergenic | 35.0% | |
| !! | AGTTTTCTCCATAATGGAGA+CGG | - | chr1_3:5326971-5326990 | None:intergenic | 35.0% |
| ! | GATGACAGTTTTCTCCATAA+TGG | - | chr1_3:5326977-5326996 | None:intergenic | 35.0% |
| TGTATTCAACTTCCGATTGA+GGG | + | chr1_3:5327034-5327053 | Msa0099230:intron | 35.0% | |
| GAAATCAAGTAACCCTCAAT+CGG | - | chr1_3:5327049-5327068 | None:intergenic | 35.0% | |
| ACTAGATGAAAGCTCGTAAA+TGG | - | chr1_3:5327094-5327113 | None:intergenic | 35.0% | |
| GAAGTCCACTATATTTAAGC+AGG | + | chr1_3:5327496-5327515 | Msa0099230:CDS | 35.0% | |
| AACAATCAAGTACACACACA+CGG | - | chr1_3:5327553-5327572 | None:intergenic | 35.0% | |
| !! | ATTTCAAACTGGCTTTGATG+AGG | + | chr1_3:5327610-5327629 | Msa0099230:CDS | 35.0% |
| AAAGTACGCAATACTTGGAA+AGG | + | chr1_3:5327686-5327705 | Msa0099230:intron | 35.0% | |
| AAGTACGCAATACTTGGAAA+GGG | + | chr1_3:5327687-5327706 | Msa0099230:intron | 35.0% | |
| TTTCTACAGTTACTTCACGA+CGG | + | chr1_3:5327841-5327860 | Msa0099230:intron | 35.0% | |
| !!! | TTGACCTACCTTATTTTCAC+TGG | - | chr1_3:5327917-5327936 | None:intergenic | 35.0% |
| TAGAGCAACCAATTGTATGT+AGG | + | chr1_3:5327977-5327996 | Msa0099230:intron | 35.0% | |
| ! | TAATTTTCCTGACAGGACAT+TGG | + | chr1_3:5328085-5328104 | Msa0099230:intron | 35.0% |
| GGCGAAAAGTTATCAGAAAT+TGG | + | chr1_3:5328106-5328125 | Msa0099230:CDS | 35.0% | |
| !!! | CTTAGTCCTTCGTTGTTTTT+CGG | + | chr1_3:5328256-5328275 | Msa0099230:intron | 35.0% |
| CTGCATGTTATACTTTCTGT+AGG | + | chr1_3:5328302-5328321 | Msa0099230:intron | 35.0% | |
| GACCTAACATACTTAAACCA+TGG | - | chr1_3:5328559-5328578 | None:intergenic | 35.0% | |
| TTCCTCGCTATTTAGTATGA+TGG | - | chr1_3:5328581-5328600 | None:intergenic | 35.0% | |
| CTCTGTTATACAATTTCAGG+AGG | + | chr1_3:5328647-5328666 | Msa0099230:intron | 35.0% | |
| AAGTAATACCAAAGGCCAAA+GGG | - | chr1_3:5328841-5328860 | None:intergenic | 35.0% | |
| TAAGTAATACCAAAGGCCAA+AGG | - | chr1_3:5328842-5328861 | None:intergenic | 35.0% | |
| GTAGTAAACCCTTTAAACAC+TGG | + | chr1_3:5328905-5328924 | Msa0099230:intron | 35.0% | |
| CAAACTTGAAATTCGCAAGT+CGG | - | chr1_3:5329022-5329041 | None:intergenic | 35.0% | |
| TTCTCTATGCTGTGTTTCAA+AGG | + | chr1_3:5329071-5329090 | Msa0099230:intron | 35.0% | |
| GTGTTTATGATTAAGGTTGC+TGG | + | chr1_3:5329193-5329212 | Msa0099230:intron | 35.0% | |
| CAAATCTTGCCAAAGAATTC+AGG | - | chr1_3:5329264-5329283 | None:intergenic | 35.0% | |
| CTGAATTCTTTGGCAAGATT+TGG | + | chr1_3:5329262-5329281 | Msa0099230:intron | 35.0% | |
| TTCGTTAAGACTAAGAACAC+CGG | - | chr1_3:5329289-5329308 | None:intergenic | 35.0% | |
| GAAACGATGGATGTTGTAAT+TGG | + | chr1_3:5329493-5329512 | Msa0099230:intron | 35.0% | |
| TGAAGCGATAAAAAGGTCAA+AGG | - | chr1_3:5329547-5329566 | None:intergenic | 35.0% | |
| TAGCCACCTTCATTATTTGA+AGG | + | chr1_3:5329783-5329802 | Msa0099230:intron | 35.0% | |
| CAACCTTCAAATAATGAAGG+TGG | - | chr1_3:5329789-5329808 | None:intergenic | 35.0% | |
| CACCTTCATTATTTGAAGGT+TGG | + | chr1_3:5329787-5329806 | Msa0099230:intron | 35.0% | |
| CACCAACCTTCAAATAATGA+AGG | - | chr1_3:5329792-5329811 | None:intergenic | 35.0% | |
| CAATTATGTTGTTGTGCAAG+GGG | - | chr1_3:5329843-5329862 | None:intergenic | 35.0% | |
| GACAATTATGTTGTTGTGCA+AGG | - | chr1_3:5329845-5329864 | None:intergenic | 35.0% | |
| !!! | CTTTTCTTGTTTTCTCCAAC+AGG | - | chr1_3:5329890-5329909 | None:intergenic | 35.0% |
| GTTGGAGAAAACAAGAAAAG+TGG | + | chr1_3:5329890-5329909 | Msa0099230:CDS | 35.0% | |
| GTCTATAGACTGTTTGATGT+CGG | + | chr1_3:5329917-5329936 | Msa0099230:CDS | 35.0% | |
| ! | ATTTTCTCCTCTCATTTCTC+TGG | - | chr1_3:5329946-5329965 | None:intergenic | 35.0% |
| AGAGAAATGAGAGGAGAAAA+TGG | + | chr1_3:5329945-5329964 | Msa0099230:CDS | 35.0% | |
| AAATGGATCCATCTGTTTGA+AGG | + | chr1_3:5329962-5329981 | Msa0099230:CDS | 35.0% | |
| TCTTTGCCAATGATATCGAA+GGG | - | chr1_3:5330244-5330263 | None:intergenic | 35.0% | |
| GGGAACAGAAAAAATTCCAT+AGG | - | chr1_3:5330471-5330490 | None:intergenic | 35.0% | |
| CATATTTGAGAAGAAGATCC+TGG | + | chr1_3:5330594-5330613 | Msa0099230:CDS | 35.0% | |
| TTGACAAAGTGTATGAGGTT+AGG | - | chr1_3:5330633-5330652 | None:intergenic | 35.0% | |
| AACCTCATACACTTTGTCAA+TGG | + | chr1_3:5330633-5330652 | Msa0099230:intron | 35.0% | |
| AACCACTCACATACATTAAG+CGG | - | chr1_3:5330705-5330724 | None:intergenic | 35.0% | |
| ! | ATGTTCAATCTCTTGTTTCC+CGG | - | chr1_3:5330751-5330770 | None:intergenic | 35.0% |
| ! | GATGAAAATAGCTTGTGACA+TGG | - | chr1_3:5331023-5331042 | None:intergenic | 35.0% |
| ACAAGCTTCAACATGAGTAT+GGG | - | chr1_3:5331107-5331126 | None:intergenic | 35.0% | |
| TACAAGCTTCAACATGAGTA+TGG | - | chr1_3:5331108-5331127 | None:intergenic | 35.0% | |
| TTTCTTACCTACGTTGAAAG+TGG | + | chr1_3:5331449-5331468 | Msa0099230:intron | 35.0% | |
| ! | ACCGCGTGTTTAAGATATAT+AGG | + | chr1_3:5331615-5331634 | Msa0099230:CDS | 35.0% |
| ! | TTGTTGATGAGACTTTGAGA+CGG | + | chr1_3:5331681-5331700 | Msa0099230:CDS | 35.0% |
| ATAACATATGGTCCACTCAT+TGG | - | chr1_3:5331737-5331756 | None:intergenic | 35.0% | |
| ! | AAGAGGTGAGATCAGATTTT+GGG | + | chr1_3:5331785-5331804 | Msa0099230:three_prime_UTR | 35.0% |
| AAAATCTTTGTTGGAGTGAG+TGG | + | chr1_3:5331865-5331884 | Msa0099230:three_prime_UTR | 35.0% | |
| ! | CTCCACATTCATCTTTAAAG+GGG | + | chr1_3:5331916-5331935 | Msa0099230:three_prime_UTR | 35.0% |
| ! | TTCCCCTTTAAAGATGAATG+TGG | - | chr1_3:5331921-5331940 | None:intergenic | 35.0% |
| CAATTATGTGTGTGAGCTCA+AGG | + | chr1_3:5324880-5324899 | Msa0099230:five_prime_UTR | 40.0% | |
| ! | TGCAAAGAAAGTACAAGTGG+TGG | + | chr1_3:5324921-5324940 | Msa0099230:five_prime_UTR | 40.0% |
| ! | GGCTTGTTCTTGTTCTTGTT+TGG | - | chr1_3:5325064-5325083 | None:intergenic | 40.0% |
| !! | TAAAGAAAAAGAGCGCCGAA+AGG | - | chr1_3:5325099-5325118 | None:intergenic | 40.0% |
| ! | TAACAACAACGACCCTTTTC+AGG | + | chr1_3:5325424-5325443 | Msa0099230:five_prime_UTR | 40.0% |
| ! | GTTTGGTTAGGGTACCAATT+TGG | + | chr1_3:5325650-5325669 | Msa0099230:intron | 40.0% |
| AAAGACCCAACCAACTAATC+CGG | - | chr1_3:5325919-5325938 | None:intergenic | 40.0% | |
| ! | GATTAGTTGGTTGGGTCTTT+GGG | + | chr1_3:5325919-5325938 | Msa0099230:intron | 40.0% |
| AAAGACCCAACCAACTAATC+CGG | - | chr1_3:5325919-5325938 | None:intergenic | 40.0% | |
| ! | GATTAGTTGGTTGGGTCTTT+GGG | + | chr1_3:5325919-5325938 | Msa0099230:intron | 40.0% |
| ! | CTGTGCATTTTCTTCAGTGT+TGG | - | chr1_3:5326270-5326289 | None:intergenic | 40.0% |
| CAACACTGAAGAAAATGCAC+AGG | + | chr1_3:5326268-5326287 | Msa0099230:CDS | 40.0% | |
| !! | TAAATCGGTTTGTAAGACGG+GGG | - | chr1_3:5326663-5326682 | None:intergenic | 40.0% |
| !! | CTAAATCGGTTTGTAAGACG+GGG | - | chr1_3:5326664-5326683 | None:intergenic | 40.0% |
| ! | CTAGATTTTTACCCGAAAGC+AGG | - | chr1_3:5326754-5326773 | None:intergenic | 40.0% |
| !!! | ATGTCCAGTTTTGGACATGA+CGG | + | chr1_3:5326774-5326793 | Msa0099230:intron | 40.0% |
| CTTATGAACTCTCGGTATTC+GGG | - | chr1_3:5326891-5326910 | None:intergenic | 40.0% | |
| AGTTCATAAGTAGTCTGTGC+AGG | + | chr1_3:5326901-5326920 | Msa0099230:intron | 40.0% | |
| ACTGTCATCTTTGCAGCATA+AGG | + | chr1_3:5326988-5327007 | Msa0099230:intron | 40.0% | |
| GTGTATTCAACTTCCGATTG+AGG | + | chr1_3:5327033-5327052 | Msa0099230:intron | 40.0% | |
| ! | ATCTAGTAGCCTGAGCTTTT+GGG | + | chr1_3:5327107-5327126 | Msa0099230:intron | 40.0% |
| GGGATAGTTGGCTATTGATA+TGG | + | chr1_3:5327127-5327146 | Msa0099230:intron | 40.0% | |
| CTCTCCAGCTCCTAAAAAAA+GGG | - | chr1_3:5327471-5327490 | None:intergenic | 40.0% | |
| ACTCTCCAGCTCCTAAAAAA+AGG | - | chr1_3:5327472-5327491 | None:intergenic | 40.0% | |
| !!! | TTTTTTAGGAGCTGGAGAGT+CGG | + | chr1_3:5327472-5327491 | Msa0099230:intron | 40.0% |
| TAGACATTGGCATGAATGAC+TGG | - | chr1_3:5327656-5327675 | None:intergenic | 40.0% | |
| !!! | GAATTGTGTTTTGGTTGAGC+TGG | + | chr1_3:5327781-5327800 | Msa0099230:intron | 40.0% |
| ! | GCTCTCATAATTTTCCTGAC+AGG | + | chr1_3:5328078-5328097 | Msa0099230:intron | 40.0% |
| CACAAGAAATAGAGAGTCTG+TGG | + | chr1_3:5328167-5328186 | Msa0099230:CDS | 40.0% | |
| AGAAATAGAGAGTCTGTGGA+AGG | + | chr1_3:5328171-5328190 | Msa0099230:CDS | 40.0% | |
| CTGATACCGAAAAACAACGA+AGG | - | chr1_3:5328265-5328284 | None:intergenic | 40.0% | |
| ! | AATGGGTACAATCTGGAACT+TGG | - | chr1_3:5328353-5328372 | None:intergenic | 40.0% |
| ! | TTTTGTCACATTGTGGGTCT+TGG | + | chr1_3:5328502-5328521 | Msa0099230:intron | 40.0% |
| TTTGTCACATTGTGGGTCTT+GGG | + | chr1_3:5328503-5328522 | Msa0099230:intron | 40.0% | |
| GTCCATCATACTAAATAGCG+AGG | + | chr1_3:5328576-5328595 | Msa0099230:intron | 40.0% | |
| GTGTTGTAGAGATTCAGTTC+AGG | + | chr1_3:5328700-5328719 | Msa0099230:CDS | 40.0% | |
| ACTCGAAAAAAATGGCCCTT+TGG | + | chr1_3:5328823-5328842 | Msa0099230:intron | 40.0% | |
| AGAGGACACCAGTGTTTAAA+GGG | - | chr1_3:5328916-5328935 | None:intergenic | 40.0% | |
| GAAACACAGCATAGAGAAGA+AGG | - | chr1_3:5329069-5329088 | None:intergenic | 40.0% | |
| GAAGAAACAATGACACGTAG+AGG | - | chr1_3:5329145-5329164 | None:intergenic | 40.0% | |
| TGCTAGTTGCCTGAATTCTT+TGG | + | chr1_3:5329252-5329271 | Msa0099230:intron | 40.0% | |
| AAATTCTGGTAGGAAGGACA+AGG | + | chr1_3:5329418-5329437 | Msa0099230:intron | 40.0% | |
| TGGTAGTATTATGATGTCCG+TGG | + | chr1_3:5329513-5329532 | Msa0099230:intron | 40.0% | |
| !!! | TGTTATTTTGACAGCCCTGT+TGG | + | chr1_3:5329872-5329891 | Msa0099230:intron | 40.0% |
| TATAGACTGTTTGATGTCGG+TGG | + | chr1_3:5329920-5329939 | Msa0099230:CDS | 40.0% | |
| CTGAAACTCCTTCAAACAGA+TGG | - | chr1_3:5329973-5329992 | None:intergenic | 40.0% | |
| GTGTATCCCTTCGATATCAT+TGG | + | chr1_3:5330235-5330254 | Msa0099230:intron | 40.0% | |
| GTCTTTGCCAATGATATCGA+AGG | - | chr1_3:5330245-5330264 | None:intergenic | 40.0% | |
| AGTGTTTGATCATACCTGGA+AGG | - | chr1_3:5330321-5330340 | None:intergenic | 40.0% | |
| ! | CCTCAAAACATTGTTGCTTC+AGG | - | chr1_3:5330401-5330420 | None:intergenic | 40.0% |
| ! | CCTGAAGCAACAATGTTTTG+AGG | + | chr1_3:5330398-5330417 | Msa0099230:CDS | 40.0% |
| ! | AGTGAAGAATGGAGCTCTAA+GGG | - | chr1_3:5330491-5330510 | None:intergenic | 40.0% |
| TAGTGAAGAATGGAGCTCTA+AGG | - | chr1_3:5330492-5330511 | None:intergenic | 40.0% | |
| CACCATTGACAAAGTGTATG+AGG | - | chr1_3:5330638-5330657 | None:intergenic | 40.0% | |
| CTCATACACTTTGTCAATGG+TGG | + | chr1_3:5330636-5330655 | Msa0099230:intron | 40.0% | |
| ATACACTTTGTCAATGGTGG+AGG | + | chr1_3:5330639-5330658 | Msa0099230:intron | 40.0% | |
| ACCACTCACATACATTAAGC+GGG | - | chr1_3:5330704-5330723 | None:intergenic | 40.0% | |
| AGGCTATAATTCAACGCCTA+AGG | - | chr1_3:5330801-5330820 | None:intergenic | 40.0% | |
| AATTTGGCGCTTATAGCACA+AGG | + | chr1_3:5330861-5330880 | Msa0099230:intron | 40.0% | |
| ATTTGGCGCTTATAGCACAA+GGG | + | chr1_3:5330862-5330881 | Msa0099230:intron | 40.0% | |
| !! | AAGCACTTCTGAGACTGTTT+CGG | - | chr1_3:5331045-5331064 | None:intergenic | 40.0% |
| CAAGCTTCAACATGAGTATG+GGG | - | chr1_3:5331106-5331125 | None:intergenic | 40.0% | |
| TGGTACCACTACAAGTTCAT+AGG | + | chr1_3:5331469-5331488 | Msa0099230:intron | 40.0% | |
| TACAGCGCAACGAATTAACA+TGG | + | chr1_3:5331515-5331534 | Msa0099230:intron | 40.0% | |
| ATATTTCCAGAACACTGCTC+CGG | + | chr1_3:5331583-5331602 | Msa0099230:CDS | 40.0% | |
| ATGTCTTCTTCACAACCTTC+TGG | - | chr1_3:5331655-5331674 | None:intergenic | 40.0% | |
| ! | GAAGAGGTGAGATCAGATTT+TGG | + | chr1_3:5331784-5331803 | Msa0099230:three_prime_UTR | 40.0% |
| ACAGGAACATACACACACAC+AGG | - | chr1_3:5325018-5325037 | None:intergenic | 45.0% | |
| GCCTTACCAGAATCACCTTT+CGG | + | chr1_3:5325081-5325100 | Msa0099230:five_prime_UTR | 45.0% | |
| !! | ATGGTGGTGGTTGTTGATAC+TGG | - | chr1_3:5325171-5325190 | None:intergenic | 45.0% |
| !! | AGCCAAAGCAAAGCTCTGAA+CGG | - | chr1_3:5325858-5325877 | None:intergenic | 45.0% |
| ! | GCTTTGCTTTGGCTTCGATT+AGG | + | chr1_3:5325864-5325883 | Msa0099230:intron | 45.0% |
| AATCCCTCAGTACACTAAGG+GGG | - | chr1_3:5325890-5325909 | None:intergenic | 45.0% | |
| CAATCCCTCAGTACACTAAG+GGG | - | chr1_3:5325891-5325910 | None:intergenic | 45.0% | |
| CCAATCCCTCAGTACACTAA+GGG | - | chr1_3:5325892-5325911 | None:intergenic | 45.0% | |
| ACCAATCCCTCAGTACACTA+AGG | - | chr1_3:5325893-5325912 | None:intergenic | 45.0% | |
| AAGACCCAACCAACTAATCC+GGG | - | chr1_3:5325918-5325937 | None:intergenic | 45.0% | |
| !! | GGATTAGTTGGTTGGGTCTT+TGG | + | chr1_3:5325918-5325937 | Msa0099230:intron | 45.0% |
| AATCCCTCAGTACACTAAGG+GGG | - | chr1_3:5325890-5325909 | None:intergenic | 45.0% | |
| CAATCCCTCAGTACACTAAG+GGG | - | chr1_3:5325891-5325910 | None:intergenic | 45.0% | |
| CCAATCCCTCAGTACACTAA+GGG | - | chr1_3:5325892-5325911 | None:intergenic | 45.0% | |
| ACCAATCCCTCAGTACACTA+AGG | - | chr1_3:5325893-5325912 | None:intergenic | 45.0% | |
| AAGACCCAACCAACTAATCC+GGG | - | chr1_3:5325918-5325937 | None:intergenic | 45.0% | |
| !! | GGATTAGTTGGTTGGGTCTT+TGG | + | chr1_3:5325918-5325937 | Msa0099230:intron | 45.0% |
| ATTCATGTACACACTTCGGC+TGG | + | chr1_3:5326160-5326179 | Msa0099230:five_prime_UTR | 45.0% | |
| GGCATAACCTGAATTCCAAG+CGG | + | chr1_3:5326697-5326716 | Msa0099230:intron | 45.0% | |
| TCTGATACCGCTTGGAATTC+AGG | - | chr1_3:5326707-5326726 | None:intergenic | 45.0% | |
| AGAGCCTATCCAAGATCCAT+TGG | + | chr1_3:5326724-5326743 | Msa0099230:intron | 45.0% | |
| TGGTCCAATGGATCTTGGAT+AGG | - | chr1_3:5326731-5326750 | None:intergenic | 45.0% | |
| ! | GATTTTTACCCGAAAGCAGG+TGG | - | chr1_3:5326751-5326770 | None:intergenic | 45.0% |
| !!! | TGTCCAGTTTTGGACATGAC+GGG | + | chr1_3:5326775-5326794 | Msa0099230:intron | 45.0% |
| ! | CATCTAGTAGCCTGAGCTTT+TGG | + | chr1_3:5327106-5327125 | Msa0099230:intron | 45.0% |
| GTATCAAGCTTCTGACCAAG+TGG | + | chr1_3:5327149-5327168 | Msa0099230:intron | 45.0% | |
| ATGATCAACTCGTGACCACT+TGG | - | chr1_3:5327167-5327186 | None:intergenic | 45.0% | |
| !!! | TGGTCCCTTTTTTTAGGAGC+TGG | + | chr1_3:5327464-5327483 | Msa0099230:intron | 45.0% |
| !! | TTTTTAGGAGCTGGAGAGTC+GGG | + | chr1_3:5327473-5327492 | Msa0099230:intron | 45.0% |
| ! | ACACACACGGTGCTAAGATA+CGG | - | chr1_3:5327540-5327559 | None:intergenic | 45.0% |
| CATTGGCATGAATGACTGGT+AGG | - | chr1_3:5327652-5327671 | None:intergenic | 45.0% | |
| TGATTACCCTCGTCTCACTA+AGG | + | chr1_3:5328138-5328157 | Msa0099230:CDS | 45.0% | |
| CAAGTTCCTTAGTGAGACGA+GGG | - | chr1_3:5328147-5328166 | None:intergenic | 45.0% | |
| AACTTGGAGCTCATTACCAC+GGG | - | chr1_3:5328337-5328356 | None:intergenic | 45.0% | |
| GAACTTGGAGCTCATTACCA+CGG | - | chr1_3:5328338-5328357 | None:intergenic | 45.0% | |
| !! | TGCCTGCTTTTGTCACATTG+TGG | + | chr1_3:5328495-5328514 | Msa0099230:intron | 45.0% |
| !! | GCCTGCTTTTGTCACATTGT+GGG | + | chr1_3:5328496-5328515 | Msa0099230:intron | 45.0% |
| ACCCACAATGTGACAAAAGC+AGG | - | chr1_3:5328500-5328519 | None:intergenic | 45.0% | |
| CTGAATCTCTACAACACCAG+TGG | - | chr1_3:5328697-5328716 | None:intergenic | 45.0% | |
| GAAGAGATCAAAATGGCGAC+AGG | - | chr1_3:5328789-5328808 | None:intergenic | 45.0% | |
| ! | AAAAATGGCCCTTTGGCCTT+TGG | + | chr1_3:5328830-5328849 | Msa0099230:intron | 45.0% |
| CAGAGGACACCAGTGTTTAA+AGG | - | chr1_3:5328917-5328936 | None:intergenic | 45.0% | |
| CTGGTGTCCTCTGACTAAAA+AGG | + | chr1_3:5328924-5328943 | Msa0099230:intron | 45.0% | |
| GCATAGAGAAGAAGGAACAC+TGG | - | chr1_3:5329061-5329080 | None:intergenic | 45.0% | |
| TTCTTTGGCAAGATTTGGGC+CGG | + | chr1_3:5329267-5329286 | Msa0099230:intron | 45.0% | |
| !! | TAAGGTTGGTTTGGTTGCTG+GGG | - | chr1_3:5329586-5329605 | None:intergenic | 45.0% |
| !! | GTAAGGTTGGTTTGGTTGCT+GGG | - | chr1_3:5329587-5329606 | None:intergenic | 45.0% |
| !! | TGTAAGGTTGGTTTGGTTGC+TGG | - | chr1_3:5329588-5329607 | None:intergenic | 45.0% |
| CTGTATTTCGCCCATTAGTC+AGG | + | chr1_3:5329659-5329678 | Msa0099230:intron | 45.0% | |
| ! | ATCTAACGGGCCTGACTAAT+GGG | - | chr1_3:5329672-5329691 | None:intergenic | 45.0% |
| ! | AATCTAACGGGCCTGACTAA+TGG | - | chr1_3:5329673-5329692 | None:intergenic | 45.0% |
| TGTGTTGCGATTAGCGAGTA+TGG | + | chr1_3:5330004-5330023 | Msa0099230:intron | 45.0% | |
| ! | TTAGGCTGGTTCTTACATCC+AGG | - | chr1_3:5330615-5330634 | None:intergenic | 45.0% |
| CAAAGTGTATGAGGTTAGGC+TGG | - | chr1_3:5330629-5330648 | None:intergenic | 45.0% | |
| TCCCGCTTAATGTATGTGAG+TGG | + | chr1_3:5330700-5330719 | Msa0099230:CDS | 45.0% | |
| ! | TCTTGTTTCCCGGTTGAAAG+TGG | - | chr1_3:5330741-5330760 | None:intergenic | 45.0% |
| !! | AGCCTTGAGCATTGAAGACT+TGG | + | chr1_3:5330816-5330835 | Msa0099230:intron | 45.0% |
| !! | GCCTTGAGCATTGAAGACTT+GGG | + | chr1_3:5330817-5330836 | Msa0099230:intron | 45.0% |
| AACATGAGTATGGGGAAGCT+TGG | - | chr1_3:5331098-5331117 | None:intergenic | 45.0% | |
| AGTGGTACCACTTTCAACGT+AGG | - | chr1_3:5331459-5331478 | None:intergenic | 45.0% | |
| !! | TTGATGAGACTTTGAGACGG+AGG | + | chr1_3:5331684-5331703 | Msa0099230:CDS | 45.0% |
| !! | GGCTTGTTATGACCAATGAG+TGG | + | chr1_3:5331722-5331741 | Msa0099230:exon | 45.0% |
| TCTTTGTTGGAGTGAGTGGA+TGG | + | chr1_3:5331869-5331888 | Msa0099230:three_prime_UTR | 45.0% | |
| GCCGAAAGGTGATTCTGGTA+AGG | - | chr1_3:5325085-5325104 | None:intergenic | 50.0% | |
| !! | AAGCAAAGCTCTGAACGGAC+TGG | - | chr1_3:5325853-5325872 | None:intergenic | 50.0% |
| GTCCGTTCAGAGCTTTGCTT+TGG | + | chr1_3:5325853-5325872 | Msa0099230:intron | 50.0% | |
| CCCTTAGTGTACTGAGGGAT+TGG | + | chr1_3:5325889-5325908 | Msa0099230:intron | 50.0% | |
| AGACCCAACCAACTAATCCG+GGG | - | chr1_3:5325917-5325936 | None:intergenic | 50.0% | |
| CCCTTAGTGTACTGAGGGAT+TGG | + | chr1_3:5325889-5325908 | Msa0099230:intron | 50.0% | |
| AGACCCAACCAACTAATCCG+GGG | - | chr1_3:5325917-5325936 | None:intergenic | 50.0% | |
| TCCATTGGACCACCTGCTTT+CGG | + | chr1_3:5326739-5326758 | Msa0099230:intron | 50.0% | |
| ACACCCGTCATGTCCAAAAC+TGG | - | chr1_3:5326781-5326800 | None:intergenic | 50.0% | |
| ! | GAACTCTCGGTATTCGGGTT+GGG | - | chr1_3:5326886-5326905 | None:intergenic | 50.0% |
| TGAACTCTCGGTATTCGGGT+TGG | - | chr1_3:5326887-5326906 | None:intergenic | 50.0% | |
| !!! | GCCTGAGCTTTTGGGATAGT+TGG | + | chr1_3:5327115-5327134 | Msa0099230:intron | 50.0% |
| GCCAACTATCCCAAAAGCTC+AGG | - | chr1_3:5327119-5327138 | None:intergenic | 50.0% | |
| !! | TTTTAGGAGCTGGAGAGTCG+GGG | + | chr1_3:5327474-5327493 | Msa0099230:intron | 50.0% |
| ! | CTTTTCGCCAATGTCCTGTC+AGG | - | chr1_3:5328095-5328114 | None:intergenic | 50.0% |
| GCAAGTTCCTTAGTGAGACG+AGG | - | chr1_3:5328148-5328167 | None:intergenic | 50.0% | |
| GTGGAAGGATGCTGCAATTC+AGG | + | chr1_3:5328186-5328205 | Msa0099230:CDS | 50.0% | |
| CTGTAGGAAACATATGCCCG+TGG | + | chr1_3:5328318-5328337 | Msa0099230:intron | 50.0% | |
| CTTGCAAGAGTTCGTACCAC+TGG | + | chr1_3:5328678-5328697 | Msa0099230:CDS | 50.0% | |
| CTTGAAATTCGCAAGTCGGC+AGG | - | chr1_3:5329018-5329037 | None:intergenic | 50.0% | |
| GTAGGAAGGACAAGGCATGT+CGG | + | chr1_3:5329426-5329445 | Msa0099230:intron | 50.0% | |
| GGTCAAAGGTTCGATCACCA+CGG | - | chr1_3:5329533-5329552 | None:intergenic | 50.0% | |
| ! | CACGGGATGTAAGGTTGGTT+TGG | - | chr1_3:5329595-5329614 | None:intergenic | 50.0% |
| ! | ACAAGAGTGCACGGGATGTA+AGG | - | chr1_3:5329604-5329623 | None:intergenic | 50.0% |
| TGACATCTCACTTGCCTTCC+AGG | + | chr1_3:5330304-5330323 | Msa0099230:intron | 50.0% | |
| ! | GACTACCAGCCACTTTCAAC+CGG | + | chr1_3:5330729-5330748 | Msa0099230:CDS | 50.0% |
| ! | ACTACCAGCCACTTTCAACC+GGG | + | chr1_3:5330730-5330749 | Msa0099230:CDS | 50.0% |
| GCCCAAGTCTTCAATGCTCA+AGG | - | chr1_3:5330821-5330840 | None:intergenic | 50.0% | |
| TTGAAGACTTGGGCCCTGTT+TGG | + | chr1_3:5330827-5330846 | Msa0099230:intron | 50.0% | |
| TGAGTATGGGGAAGCTTGGA+TGG | - | chr1_3:5331094-5331113 | None:intergenic | 50.0% | |
| AATTCGTTGCGCTGTACTGC+TGG | - | chr1_3:5331511-5331530 | None:intergenic | 50.0% | |
| AACCTTCTGGTCAAGTGCAG+TGG | - | chr1_3:5331642-5331661 | None:intergenic | 50.0% | |
| GAGACGGAGGAATCTCTTTG+AGG | + | chr1_3:5331697-5331716 | Msa0099230:CDS | 50.0% | |
| TGGAGTGAGTGGATGGAGAA+AGG | + | chr1_3:5331876-5331895 | Msa0099230:three_prime_UTR | 50.0% | |
| !! | AGAGCGCCGAAAGGTGATTC+TGG | - | chr1_3:5325090-5325109 | None:intergenic | 55.0% |
| TAGGCCCCCTTAGTGTACTG+AGG | + | chr1_3:5325883-5325902 | Msa0099230:intron | 55.0% | |
| AGGCCCCCTTAGTGTACTGA+GGG | + | chr1_3:5325884-5325903 | Msa0099230:intron | 55.0% | |
| !! | GATTGGTCCCCCGGATTAGT+TGG | + | chr1_3:5325906-5325925 | Msa0099230:intron | 55.0% |
| !! | GTCCCCCGGATTAGTTGGTT+GGG | + | chr1_3:5325911-5325930 | Msa0099230:intron | 55.0% |
| GACCCAACCAACTAATCCGG+GGG | - | chr1_3:5325916-5325935 | None:intergenic | 55.0% | |
| AGTTGGTTGGGTCTTTGGGC+CGG | + | chr1_3:5325923-5325942 | Msa0099230:intron | 55.0% | |
| TAGGCCCCCTTAGTGTACTG+AGG | + | chr1_3:5325883-5325902 | Msa0099230:intron | 55.0% | |
| AGGCCCCCTTAGTGTACTGA+GGG | + | chr1_3:5325884-5325903 | Msa0099230:intron | 55.0% | |
| !! | GATTGGTCCCCCGGATTAGT+TGG | + | chr1_3:5325906-5325925 | Msa0099230:intron | 55.0% |
| !! | GTCCCCCGGATTAGTTGGTT+GGG | + | chr1_3:5325911-5325930 | Msa0099230:intron | 55.0% |
| GACCCAACCAACTAATCCGG+GGG | - | chr1_3:5325916-5325935 | None:intergenic | 55.0% | |
| AGTTGGTTGGGTCTTTGGGC+CGG | + | chr1_3:5325923-5325942 | Msa0099230:intron | 55.0% | |
| ! | GGATAGGCTCTGATACCGCT+TGG | - | chr1_3:5326715-5326734 | None:intergenic | 55.0% |
| GCAGGTGGTCCAATGGATCT+TGG | - | chr1_3:5326736-5326755 | None:intergenic | 55.0% | |
| CCATTGGACCACCTGCTTTC+GGG | + | chr1_3:5326740-5326759 | Msa0099230:intron | 55.0% | |
| !! | GGGACTAGCTTGCAAGGTGA+GGG | - | chr1_3:5326866-5326885 | None:intergenic | 55.0% |
| !! | TGGGACTAGCTTGCAAGGTG+AGG | - | chr1_3:5326867-5326886 | None:intergenic | 55.0% |
| GAGTGCACGGGATGTAAGGT+TGG | - | chr1_3:5329600-5329619 | None:intergenic | 55.0% | |
| TCGGTGGCCAGAGAAATGAG+AGG | + | chr1_3:5329936-5329955 | Msa0099230:CDS | 55.0% | |
| GTTTCCCGGTTGAAAGTGGC+TGG | - | chr1_3:5330737-5330756 | None:intergenic | 55.0% | |
| AACACGCGGTCTACGCTATC+CGG | - | chr1_3:5331605-5331624 | None:intergenic | 55.0% | |
| GACCACTGCACTTGACCAGA+AGG | + | chr1_3:5331637-5331656 | Msa0099230:CDS | 55.0% | |
| !! | CGGAGGAATCTCTTTGAGGC+TGG | + | chr1_3:5331701-5331720 | Msa0099230:CDS | 55.0% |
| !! | GTACTGAGGGATTGGTCCCC+CGG | + | chr1_3:5325897-5325916 | Msa0099230:intron | 60.0% |
| !! | GGTCCCCCGGATTAGTTGGT+TGG | + | chr1_3:5325910-5325929 | Msa0099230:intron | 60.0% |
| !! | GTACTGAGGGATTGGTCCCC+CGG | + | chr1_3:5325897-5325916 | Msa0099230:intron | 60.0% |
| !! | GGTCCCCCGGATTAGTTGGT+TGG | + | chr1_3:5325910-5325929 | Msa0099230:intron | 60.0% |
| CCCGAAAGCAGGTGGTCCAA+TGG | - | chr1_3:5326743-5326762 | None:intergenic | 60.0% | |
| !! | CGGGTTGGGACTAGCTTGCA+AGG | - | chr1_3:5326872-5326891 | None:intergenic | 60.0% |
| !! | TGGTTTGGTTGCTGGGGTGG+AGG | - | chr1_3:5329580-5329599 | None:intergenic | 60.0% |
| !! | GGTTGGTTTGGTTGCTGGGG+TGG | - | chr1_3:5329583-5329602 | None:intergenic | 60.0% |
| CGCTATCCGGAGCAGTGTTC+TGG | - | chr1_3:5331592-5331611 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 5324866 | 5332068 | 5324866 | ID=Msa0099230;Name=Msa0099230 |
| chr1_3 | mRNA | 5324866 | 5332068 | 5324866 | ID=Msa0099230-mRNA-1;Parent=Msa0099230;Name=Msa0099230-mRNA-1;_AED=0.18;_eAED=0.18;_QI=641|1|1|1|0.92|0.85|14|335|392 |
| chr1_3 | exon | 5324866 | 5325445 | 5324866 | ID=Msa0099230-mRNA-1:exon:1937;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5326142 | 5326289 | 5326142 | ID=Msa0099230-mRNA-1:exon:1938;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5326378 | 5326450 | 5326378 | ID=Msa0099230-mRNA-1:exon:1939;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5327480 | 5327517 | 5327480 | ID=Msa0099230-mRNA-1:exon:1940;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5327599 | 5327688 | 5327599 | ID=Msa0099230-mRNA-1:exon:1941;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5327850 | 5327927 | 5327850 | ID=Msa0099230-mRNA-1:exon:1942;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5328100 | 5328207 | 5328100 | ID=Msa0099230-mRNA-1:exon:1943;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5328324 | 5328425 | 5328324 | ID=Msa0099230-mRNA-1:exon:1944;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5328666 | 5328721 | 5328666 | ID=Msa0099230-mRNA-1:exon:1945;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5329886 | 5330020 | 5329886 | ID=Msa0099230-mRNA-1:exon:1946;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5330326 | 5330419 | 5330326 | ID=Msa0099230-mRNA-1:exon:1947;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5330559 | 5330618 | 5330559 | ID=Msa0099230-mRNA-1:exon:1948;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5330699 | 5330778 | 5330699 | ID=Msa0099230-mRNA-1:exon:1949;Parent=Msa0099230-mRNA-1 |
| chr1_3 | exon | 5331556 | 5332068 | 5331556 | ID=Msa0099230-mRNA-1:exon:1950;Parent=Msa0099230-mRNA-1 |
| chr1_3 | five_prime_UTR | 5324866 | 5325445 | 5324866 | ID=Msa0099230-mRNA-1:five_prime_utr;Parent=Msa0099230-mRNA-1 |
| chr1_3 | five_prime_UTR | 5326142 | 5326202 | 5326142 | ID=Msa0099230-mRNA-1:five_prime_utr;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5326203 | 5326289 | 5326203 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5326378 | 5326450 | 5326378 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5327480 | 5327517 | 5327480 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5327599 | 5327688 | 5327599 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5327850 | 5327927 | 5327850 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5328100 | 5328207 | 5328100 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5328324 | 5328425 | 5328324 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5328666 | 5328721 | 5328666 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5329886 | 5330020 | 5329886 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5330326 | 5330419 | 5330326 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5330559 | 5330618 | 5330559 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5330699 | 5330778 | 5330699 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | CDS | 5331556 | 5331733 | 5331556 | ID=Msa0099230-mRNA-1:cds;Parent=Msa0099230-mRNA-1 |
| chr1_3 | three_prime_UTR | 5331734 | 5332068 | 5331734 | ID=Msa0099230-mRNA-1:three_prime_utr;Parent=Msa0099230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
