AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0105270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105270 MtrunA17_Chr1g0160141 88.415 164 1 1 1 146 1 164 7.05e-102 289
Msa0105270 MtrunA17_Chr3g0139221 50.898 167 63 1 1 148 1 167 2.08e-56 176
Msa0105270 MtrunA17_Chr1g0147641 43.114 167 52 2 1 148 1 143 7.57e-40 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0105270 AT1G44790.1 64.024 164 41 1 1 146 1 164 7.66e-74 219
Msa0105270 AT5G26220.2 50.303 165 63 1 1 146 1 165 1.98e-54 169
Msa0105270 AT5G26220.1 49.701 167 65 1 1 148 1 167 6.19e-54 169
Msa0105270 AT4G31290.1 50.299 167 64 1 1 148 1 167 2.42e-53 168

Find 60 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATAATAAGTACTGAAAT+TGG 0.155621 1_3:+13653326 None:intergenic
TGCCAAATTCTGAGTTTAAT+TGG 0.163058 1_3:+13659206 None:intergenic
GCTACAACGCCAGCCATTTC+TGG 0.183017 1_3:-13654837 Msa0105270:CDS
TTCCAATTAAACTCAGAATT+TGG 0.190157 1_3:-13659208 Msa0105270:five_prime_UTR
AACATGGCAATATGGGTATT+TGG 0.235187 1_3:-13659109 Msa0105270:CDS
TTATCTTGTATTGATCTCTT+AGG 0.251168 1_3:-13653620 Msa0105270:three_prime_UTR
CCACCACAAACATGGCAATA+TGG 0.253544 1_3:-13659117 Msa0105270:exon
AAAGTTAATGTTAATTATTT+AGG 0.257572 1_3:-13654698 Msa0105270:CDS
ATTATCTCCCAACAACATTC+TGG 0.315889 1_3:+13653445 None:intergenic
TTAACATTAACTTTCTTGTC+TGG 0.340628 1_3:+13654707 None:intergenic
GAAAAGGCTCTCCTTCAAAT+AGG 0.383568 1_3:-13653695 Msa0105270:CDS
CTACAACGCCAGCCATTTCT+GGG 0.396639 1_3:-13654836 Msa0105270:CDS
CACCACAAACATGGCAATAT+GGG 0.400036 1_3:-13659116 Msa0105270:exon
AGAGGAACCCCTGAGTTTCC+TGG 0.406968 1_3:-13658894 Msa0105270:CDS
AACTACGATGAACGTCTTGT+TGG 0.410652 1_3:-13659055 Msa0105270:CDS
AAAGTTCCTTGCCTATTTGA+AGG 0.416589 1_3:+13653684 None:intergenic
AGGAAAAGATACTCTCTGTT+AGG 0.426813 1_3:+13653722 None:intergenic
GCAATATGGGTATTTGGTTA+CGG 0.427063 1_3:-13659103 Msa0105270:CDS
AATTCTTTCCAGAATGTTGT+TGG 0.430442 1_3:-13653453 Msa0105270:three_prime_UTR
TAACATTAACTTTCTTGTCT+GGG 0.432444 1_3:+13654708 None:intergenic
ATATAATAAGTACTGAAATT+GGG 0.439758 1_3:+13653327 None:intergenic
TTACACCAATGCCCCAGAAA+TGG 0.453738 1_3:+13654824 None:intergenic
GCCAGCCATTTCTGGGGCAT+TGG 0.464312 1_3:-13654829 Msa0105270:CDS
ATTCTTTCCAGAATGTTGTT+GGG 0.473378 1_3:-13653452 Msa0105270:three_prime_UTR
AATCCATTATTAAAATCCAT+TGG 0.476866 1_3:-13653483 Msa0105270:three_prime_UTR
TTGATCTTGCAAATGAAGTC+AGG 0.482220 1_3:-13653577 Msa0105270:three_prime_UTR
GCAATATCTTCAACCGATGC+AGG 0.494219 1_3:+13654674 None:intergenic
GAAAGAATTGAAGTTTCCAA+TGG 0.503777 1_3:+13653467 None:intergenic
ATTGCCATGTTTGTGGTGGT+TGG 0.507092 1_3:+13659121 None:intergenic
GATCAATAACATGCTTGTCT+TGG 0.509648 1_3:+13653594 None:intergenic
ACACAAATTTCTCCTTGAGC+AGG 0.509766 1_3:+13658852 None:intergenic
ACAGTTCTACCAGGAAACTC+AGG 0.518664 1_3:+13658885 None:intergenic
TACCCATATTGCCATGTTTG+TGG 0.520168 1_3:+13659114 None:intergenic
GGTTCTTTGATTTCAAAAGC+AGG 0.540195 1_3:-13659082 Msa0105270:CDS
AACATTAACTTTCTTGTCTG+GGG 0.542668 1_3:+13654709 None:intergenic
TATCGACGTGTCTTCTACCA+AGG 0.543807 1_3:-13659019 Msa0105270:intron
CTGATAGTATCTGGGAGTGC+GGG 0.546667 1_3:-13655027 Msa0105270:intron
AGGCAAATTGTTCAAGCTGA+AGG 0.551065 1_3:-13653755 Msa0105270:CDS
TACTCTCTGTTAGGTCCTGT+GGG 0.551232 1_3:+13653731 None:intergenic
ATACTCTCTGTTAGGTCCTG+TGG 0.551871 1_3:+13653730 None:intergenic
GTCACATTGGAGCCTGCTCA+AGG 0.555859 1_3:-13658864 Msa0105270:CDS
TTAAGTTATTTCCATGACAA+AGG 0.557481 1_3:-13653290 Msa0105270:three_prime_UTR
ACCAATGCCCCAGAAATGGC+TGG 0.564036 1_3:+13654828 None:intergenic
TGTAATTGCTGATAGTATCT+GGG 0.569206 1_3:-13655035 Msa0105270:intron
CCATATTGCCATGTTTGTGG+TGG 0.571049 1_3:+13659117 None:intergenic
GGCTCTCCTTCAAATAGGCA+AGG 0.575991 1_3:-13653690 Msa0105270:CDS
TAATTATTTAGGTCCTGCAT+CGG 0.576380 1_3:-13654687 Msa0105270:CDS
TCCAATGTGACAGTTCTACC+AGG 0.583951 1_3:+13658876 None:intergenic
TTAGGTTCTACTGATCATAG+AGG 0.594149 1_3:-13658912 Msa0105270:intron
ATAACCAACCACCACAAACA+TGG 0.606349 1_3:-13659125 Msa0105270:exon
GTTCAAGCTGAAGGTCCCAC+AGG 0.606881 1_3:-13653746 Msa0105270:CDS
TCCTGGTAGAACTGTCACAT+TGG 0.607768 1_3:-13658877 Msa0105270:CDS
CAGTTCTACCAGGAAACTCA+GGG 0.609640 1_3:+13658886 None:intergenic
GGAGAAGCAATACGATCGGA+AGG 0.618346 1_3:-13655006 Msa0105270:CDS
CATCGGTTGAAGATATTGCA+AGG 0.622903 1_3:-13654670 Msa0105270:intron
TGCGGGAGAAGCAATACGAT+CGG 0.624661 1_3:-13655010 Msa0105270:CDS
GCTGATAGTATCTGGGAGTG+CGG 0.626659 1_3:-13655028 Msa0105270:intron
ACATGAGAATATTATAGACA+TGG 0.663456 1_3:+13653410 None:intergenic
TACAACGCCAGCCATTTCTG+GGG 0.691391 1_3:-13654835 Msa0105270:CDS
AGTTCTACCAGGAAACTCAG+GGG 0.786483 1_3:+13658887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATATTTTAAAAATCATAT+TGG - chr1_3:13654332-13654351 Msa0105270:intron 10.0%
!!! TTTCGATTTTTTAAATTTTT+TGG - chr1_3:13655382-13655401 Msa0105270:intron 10.0%
!!! TGAATATTTTTATGATTTTT+TGG - chr1_3:13655413-13655432 Msa0105270:intron 10.0%
!!! GAATATTTTTATGATTTTTT+GGG - chr1_3:13655414-13655433 Msa0105270:intron 10.0%
!!! AATATTTTTATGATTTTTTG+GGG - chr1_3:13655415-13655434 Msa0105270:intron 10.0%
!!! AATTATGAAACAATATTTTA+TGG + chr1_3:13655610-13655629 None:intergenic 10.0%
!! AAAGTTAATGTTAATTATTT+AGG - chr1_3:13657735-13657754 Msa0105270:intron 10.0%
!!! GTTATAAAAAAATGATTTTC+TGG - chr1_3:13653841-13653860 Msa0105270:intron 15.0%
!!! GATTATTTTGTTTAAAAAAG+TGG - chr1_3:13653976-13653995 Msa0105270:intron 15.0%
!! TAAGCTGAAAAAATAAATAA+TGG - chr1_3:13654123-13654142 Msa0105270:intron 15.0%
!! AAGCTGAAAAAATAAATAAT+GGG - chr1_3:13654124-13654143 Msa0105270:intron 15.0%
!!! TTGTATTCAATTTTTTTATG+TGG - chr1_3:13654249-13654268 Msa0105270:intron 15.0%
!!! GTTTTAAGGATAATAAAATA+TGG - chr1_3:13654897-13654916 Msa0105270:intron 15.0%
!!! TCAGATTTTTTTTAAAATTC+TGG - chr1_3:13655137-13655156 Msa0105270:intron 15.0%
!!! ATAAATTACTTGTTTTAACT+AGG - chr1_3:13656658-13656677 Msa0105270:intron 15.0%
!! AAGAAAGACAAAATATATTA+AGG + chr1_3:13656987-13657006 None:intergenic 15.0%
!!! TAACATTCTTAATTTCTTTT+TGG - chr1_3:13657027-13657046 Msa0105270:intron 15.0%
!! AAATAATCAATCTTTATTAG+TGG + chr1_3:13657550-13657569 None:intergenic 15.0%
!!! TATTTTTTTTTCTTTTTTCC+AGG - chr1_3:13657565-13657584 Msa0105270:intron 15.0%
!!! ATATAATAAGTACTGAAATT+GGG + chr1_3:13659109-13659128 None:intergenic 15.0%
!!! TATATAATAAGTACTGAAAT+TGG + chr1_3:13659110-13659129 None:intergenic 15.0%
!!! AAAAGTCATACTAATTTTCT+AGG + chr1_3:13654293-13654312 None:intergenic 20.0%
!! CTATTGGAAAAATTATCAAT+TGG - chr1_3:13654782-13654801 Msa0105270:intron 20.0%
!!! AATTTTAGTTAGTCGTTTTA+AGG - chr1_3:13654883-13654902 Msa0105270:intron 20.0%
!!! AATCTGACCTTTTTTTAAAT+TGG + chr1_3:13655257-13655276 None:intergenic 20.0%
!! AATGCAATCAATATTTGAAA+TGG - chr1_3:13655803-13655822 Msa0105270:intron 20.0%
!!! TCAAAATTTTTACCAAGTTT+TGG - chr1_3:13655963-13655982 Msa0105270:intron 20.0%
!!! AATTATTCATTTTTCTCCAA+TGG - chr1_3:13656191-13656210 Msa0105270:intron 20.0%
!!! AATTTCATTTTGACAAGTAT+TGG + chr1_3:13656217-13656236 None:intergenic 20.0%
!! TGATATATGACAAAACATTA+TGG - chr1_3:13656437-13656456 Msa0105270:intron 20.0%
!! GTCTAATCTATAAATAAGTT+AGG - chr1_3:13656538-13656557 Msa0105270:intron 20.0%
!!! TTTCCCTTTATTTTAACTAT+TGG - chr1_3:13656829-13656848 Msa0105270:intron 20.0%
!! AGTCCAATAGTTAAAATAAA+GGG + chr1_3:13656835-13656854 None:intergenic 20.0%
!! TAGTCCAATAGTTAAAATAA+AGG + chr1_3:13656836-13656855 None:intergenic 20.0%
!! AGAAATTAAGAATGTTATGA+CGG + chr1_3:13657024-13657043 None:intergenic 20.0%
!!! TCAATTTTTATCTCTACTTA+AGG - chr1_3:13657270-13657289 Msa0105270:intron 20.0%
!! ATTAACTAGAGGTAAAAATT+AGG + chr1_3:13657311-13657330 None:intergenic 20.0%
!! ATATGTTCAAAACATACAAA+AGG + chr1_3:13657664-13657683 None:intergenic 20.0%
!! GTTCCTTATTATAATTAGTT+TGG - chr1_3:13657855-13657874 Msa0105270:intron 20.0%
!! TGCATAAAAAACTAATTCAT+AGG + chr1_3:13657900-13657919 None:intergenic 20.0%
!!! TTGTTATCTTTTAATATGCA+AGG - chr1_3:13657920-13657939 Msa0105270:intron 20.0%
!!! TGTCTCTGTTTTTTTTTTTT+AGG + chr1_3:13658072-13658091 None:intergenic 20.0%
!! TAAAAAAAAAAAACAGAGAC+AGG - chr1_3:13658071-13658090 Msa0105270:intron 20.0%
!! TTTATTTATTTGTCATCATC+CGG - chr1_3:13658364-13658383 Msa0105270:intron 20.0%
!!! TAGTCTGATTTTTAAAACAT+TGG - chr1_3:13658444-13658463 Msa0105270:intron 20.0%
!! AATCCATTATTAAAATCCAT+TGG - chr1_3:13658950-13658969 Msa0105270:intron 20.0%
!!! TTTCCAATGGATTTTAATAA+TGG + chr1_3:13658956-13658975 None:intergenic 20.0%
! TTCCAATTAAACTCAGAATT+TGG - chr1_3:13653225-13653244 Msa0105270:three_prime_UTR 25.0%
!! TTGAATTTGAAATAGAACCT+TGG + chr1_3:13653434-13653453 None:intergenic 25.0%
! CAATAACATCAAAATCTTCA+TGG - chr1_3:13653479-13653498 Msa0105270:three_prime_UTR 25.0%
!!! TTCATGGTTTTTTCTTTGAT+GGG - chr1_3:13653495-13653514 Msa0105270:three_prime_UTR 25.0%
!!! TTTTTCTTTGATGGGTTTTT+AGG - chr1_3:13653503-13653522 Msa0105270:three_prime_UTR 25.0%
! TTGGTTGAACAATTTGATTA+AGG - chr1_3:13653674-13653693 Msa0105270:exon 25.0%
! TGGTTGAACAATTTGATTAA+GGG - chr1_3:13653675-13653694 Msa0105270:exon 25.0%
! ATTGAATACAACTACATCTA+AGG + chr1_3:13654240-13654259 None:intergenic 25.0%
!!! CAATGTTTTGAAAACCAAAT+TGG + chr1_3:13654492-13654511 None:intergenic 25.0%
!!! CAATTTGGTTTTCAAAACAT+TGG - chr1_3:13654490-13654509 Msa0105270:intron 25.0%
!! TTATTGAATCTTTTGCGAAA+AGG - chr1_3:13654595-13654614 Msa0105270:intron 25.0%
! CATACATATCAACAAGTTTA+CGG + chr1_3:13654808-13654827 None:intergenic 25.0%
! CACACAATTGGTAAAATATA+GGG + chr1_3:13655001-13655020 None:intergenic 25.0%
! TCACACAATTGGTAAAATAT+AGG + chr1_3:13655002-13655021 None:intergenic 25.0%
! CTGGATACCAATTTAAAAAA+AGG - chr1_3:13655247-13655266 Msa0105270:intron 25.0%
!! ACCTTTTCACTTAATTACAT+TGG - chr1_3:13655686-13655705 Msa0105270:intron 25.0%
! AGATCAAGAAATTGCATTAA+CGG - chr1_3:13655886-13655905 Msa0105270:intron 25.0%
!!! AATTTTTACCAAGTTTTGGT+TGG - chr1_3:13655967-13655986 Msa0105270:intron 25.0%
! GGGATAATCTATTGTATATA+AGG + chr1_3:13656091-13656110 None:intergenic 25.0%
! TAGCAATGACTAATTTCTAT+GGG + chr1_3:13656111-13656130 None:intergenic 25.0%
! TTAGCAATGACTAATTTCTA+TGG + chr1_3:13656112-13656131 None:intergenic 25.0%
! AGATTTAGAGATTAATGAGT+TGG - chr1_3:13656405-13656424 Msa0105270:intron 25.0%
! TTAAAATAAAGGGAAAGCAA+GGG + chr1_3:13656825-13656844 None:intergenic 25.0%
!!! GAAAGCATTACTGATAATTT+AGG + chr1_3:13656961-13656980 None:intergenic 25.0%
! AAATTGAGAGATGAAAACAA+GGG + chr1_3:13657174-13657193 None:intergenic 25.0%
! AAAATTGAGAGATGAAAACA+AGG + chr1_3:13657175-13657194 None:intergenic 25.0%
! AAGACAGTATAATTAACTAG+AGG + chr1_3:13657322-13657341 None:intergenic 25.0%
! CATATCTAATTAGATCATTG+TGG - chr1_3:13657679-13657698 Msa0105270:intron 25.0%
! TAACATTAACTTTCTTGTCT+GGG + chr1_3:13657728-13657747 None:intergenic 25.0%
! TTAACATTAACTTTCTTGTC+TGG + chr1_3:13657729-13657748 None:intergenic 25.0%
! CCTCCAAACTAATTATAATA+AGG + chr1_3:13657861-13657880 None:intergenic 25.0%
!! CCTTATTATAATTAGTTTGG+AGG - chr1_3:13657858-13657877 Msa0105270:intron 25.0%
!! TTTTATAAACTAGACCAAAC+TGG - chr1_3:13658144-13658163 Msa0105270:intron 25.0%
!!! GTTGTCTTTTTGTTTTTTGA+TGG - chr1_3:13658215-13658234 Msa0105270:intron 25.0%
!!! TCTTTTTGTTTTTTGATGGA+TGG - chr1_3:13658219-13658238 Msa0105270:intron 25.0%
! ATACCTAAAGACTAAAAAGT+AGG + chr1_3:13658558-13658577 None:intergenic 25.0%
!! AGTAATGAGTAATTTTCACA+GGG + chr1_3:13658618-13658637 None:intergenic 25.0%
! AAAAACAAAGTCAAACTCAA+AGG + chr1_3:13658651-13658670 None:intergenic 25.0%
!!! TGACTTTGTTTTTCATTTAC+AGG - chr1_3:13658658-13658677 Msa0105270:intron 25.0%
!! TTATCTTGTATTGATCTCTT+AGG - chr1_3:13658813-13658832 Msa0105270:intron 25.0%
! ACATGAGAATATTATAGACA+TGG + chr1_3:13659026-13659045 None:intergenic 25.0%
!! TTAAGTTATTTCCATGACAA+AGG - chr1_3:13659143-13659162 Msa0105270:five_prime_UTR 25.0%
!!! CTTTATTTTATCCTTTGTCA+TGG + chr1_3:13659157-13659176 None:intergenic 25.0%
TGCCAAATTCTGAGTTTAAT+TGG + chr1_3:13653230-13653249 None:intergenic 30.0%
!!! CTTCATGGTTTTTTCTTTGA+TGG - chr1_3:13653494-13653513 Msa0105270:three_prime_UTR 30.0%
TCAAATTGTTCAACCAAACA+AGG + chr1_3:13653671-13653690 None:intergenic 30.0%
ACTAGTTAAACCATCCAATT+TGG - chr1_3:13654475-13654494 Msa0105270:intron 30.0%
!!! GTTTTGAAAACCAAATTGGA+TGG + chr1_3:13654488-13654507 None:intergenic 30.0%
TTTCAAAACATTGGTGCAAA+TGG - chr1_3:13654499-13654518 Msa0105270:intron 30.0%
GTTGTCTGATTAAGATCAAA+AGG - chr1_3:13654705-13654724 Msa0105270:CDS 30.0%
ACTTGATTATCTTTGACTGT+TGG - chr1_3:13654741-13654760 Msa0105270:intron 30.0%
CTTGATTATCTTTGACTGTT+GGG - chr1_3:13654742-13654761 Msa0105270:intron 30.0%
GAGAGATTCAATTCAAGAAA+TGG + chr1_3:13654840-13654859 None:intergenic 30.0%
CACAATTGACAAAATATAGG+GGG + chr1_3:13654939-13654958 None:intergenic 30.0%
GCACAATTGACAAAATATAG+GGG + chr1_3:13654940-13654959 None:intergenic 30.0%
CGCACAATTGACAAAATATA+GGG + chr1_3:13654941-13654960 None:intergenic 30.0%
TCGCACAATTGACAAAATAT+AGG + chr1_3:13654942-13654961 None:intergenic 30.0%
TCGCACAATTGGTAAAATAT+AGG - chr1_3:13655565-13655584 Msa0105270:intron 30.0%
CGCACAATTGGTAAAATATA+GGG - chr1_3:13655566-13655585 Msa0105270:intron 30.0%
GCACAATTGGTAAAATATAG+GGG - chr1_3:13655567-13655586 Msa0105270:intron 30.0%
CACAATTGGTAAAATATAGG+GGG - chr1_3:13655568-13655587 Msa0105270:intron 30.0%
GCCAATGTAATTAAGTGAAA+AGG + chr1_3:13655690-13655709 None:intergenic 30.0%
TGAAATTCTCAGCATACAAA+AGG - chr1_3:13656230-13656249 Msa0105270:intron 30.0%
AAAAGGAAATTCCGTTATCT+TGG - chr1_3:13656247-13656266 Msa0105270:intron 30.0%
! GTTTCTTTCATAGTTTTCCT+AGG + chr1_3:13656376-13656395 None:intergenic 30.0%
TTAGCATTAGCTGTTTAAGA+TGG + chr1_3:13656574-13656593 None:intergenic 30.0%
GTTAAAATAAAGGGAAAGCA+AGG + chr1_3:13656826-13656845 None:intergenic 30.0%
AATTGAGAGATGAAAACAAG+GGG + chr1_3:13657173-13657192 None:intergenic 30.0%
CCTGTTATTCTATATGATGA+CGG - chr1_3:13657206-13657225 Msa0105270:intron 30.0%
GACTGTAATTATAAGTCTCA+TGG + chr1_3:13657249-13657268 None:intergenic 30.0%
TGTAATTGCTGATAGTATCT+GGG - chr1_3:13657398-13657417 Msa0105270:intron 30.0%
AACATTAACTTTCTTGTCTG+GGG + chr1_3:13657727-13657746 None:intergenic 30.0%
TAATTATTTAGGTCCTGCAT+CGG - chr1_3:13657746-13657765 Msa0105270:intron 30.0%
AGGCTATTATAGTAATACTC+GGG + chr1_3:13657803-13657822 None:intergenic 30.0%
GAGGCTATTATAGTAATACT+CGG + chr1_3:13657804-13657823 None:intergenic 30.0%
ACTATAATAGCCTCAATTTG+TGG - chr1_3:13657810-13657829 Msa0105270:intron 30.0%
TAAGTTTATGCCACAAATTG+AGG + chr1_3:13657823-13657842 None:intergenic 30.0%
! TCTTTTAATATGCAAGGTAC+TGG - chr1_3:13657926-13657945 Msa0105270:intron 30.0%
!! CTTTTAATATGCAAGGTACT+GGG - chr1_3:13657927-13657946 Msa0105270:intron 30.0%
!!! TTTTAATATGCAAGGTACTG+GGG - chr1_3:13657928-13657947 Msa0105270:intron 30.0%
TTAATGTTATGTTGTCAGTG+AGG + chr1_3:13658024-13658043 None:intergenic 30.0%
GAATTGAATGAACTAAAAGC+AGG + chr1_3:13658290-13658309 None:intergenic 30.0%
ATAGTTCAATAAGATGAACC+AGG + chr1_3:13658396-13658415 None:intergenic 30.0%
CTATAATCTAGAGATCTTGT+CGG - chr1_3:13658412-13658431 Msa0105270:intron 30.0%
!!! TTGCCTACTTTTTAGTCTTT+AGG - chr1_3:13658552-13658571 Msa0105270:intron 30.0%
! CAGTAATGAGTAATTTTCAC+AGG + chr1_3:13658619-13658638 None:intergenic 30.0%
GAAAGAATTGAAGTTTCCAA+TGG + chr1_3:13658969-13658988 None:intergenic 30.0%
AATTCTTTCCAGAATGTTGT+TGG - chr1_3:13658980-13658999 Msa0105270:intron 30.0%
ATTCTTTCCAGAATGTTGTT+GGG - chr1_3:13658981-13659000 Msa0105270:intron 30.0%
AACATGGCAATATGGGTATT+TGG - chr1_3:13653324-13653343 Msa0105270:three_prime_UTR 35.0%
GCAATATGGGTATTTGGTTA+CGG - chr1_3:13653330-13653349 Msa0105270:three_prime_UTR 35.0%
! GGTTCTTTGATTTCAAAAGC+AGG - chr1_3:13653351-13653370 Msa0105270:three_prime_UTR 35.0%
TTAGGTTCTACTGATCATAG+AGG - chr1_3:13653521-13653540 Msa0105270:three_prime_UTR 35.0%
! GATTAAGGGTCTGTTTGTTA+TGG - chr1_3:13653689-13653708 Msa0105270:CDS 35.0%
! AACTACATCTAAGGCTTGTT+TGG + chr1_3:13654231-13654250 None:intergenic 35.0%
ATAACCAGATCTCTAGATCA+TGG - chr1_3:13654363-13654382 Msa0105270:intron 35.0%
GCTGCTCAAATTGTTTCAAT+CGG - chr1_3:13654390-13654409 Msa0105270:intron 35.0%
CTGCTCAAATTGTTTCAATC+GGG - chr1_3:13654391-13654410 Msa0105270:intron 35.0%
CTATGGTTTAGTTGTTTGAG+CGG + chr1_3:13654434-13654453 None:intergenic 35.0%
GCAAATGGCAACGTTTAATA+TGG - chr1_3:13654514-13654533 Msa0105270:intron 35.0%
!! GAAAAGGTTAGCTTCGAATA+GGG - chr1_3:13654611-13654630 Msa0105270:intron 35.0%
TTAGCTTCGAATAGGGAAAA+TGG - chr1_3:13654618-13654637 Msa0105270:intron 35.0%
ACATTACACTGTTGTGGATT+TGG - chr1_3:13654654-13654673 Msa0105270:intron 35.0%
! AATCGCTCGTTTGAAACAAT+GGG + chr1_3:13655474-13655493 None:intergenic 35.0%
! AAATCGCTCGTTTGAAACAA+TGG + chr1_3:13655473-13655492 None:intergenic 35.0%
! AAATCGCTCGTTTGAAACAA+TGG - chr1_3:13655473-13655492 Msa0105270:intron 35.0%
! AATCGCTCGTTTGAAACAAT+GGG - chr1_3:13655474-13655493 Msa0105270:intron 35.0%
TCGCACAATTGGCAAAATAT+AGG - chr1_3:13655505-13655524 Msa0105270:intron 35.0%
CGCACAATTGGCAAAATATA+GGG - chr1_3:13655506-13655525 Msa0105270:intron 35.0%
GAAAAGGTAAACGTTAAACG+TGG + chr1_3:13655674-13655693 None:intergenic 35.0%
! GATGCTTACTCTATTTTGCA+AGG - chr1_3:13655825-13655844 Msa0105270:intron 35.0%
! TCTATTTTGCAAGGAGATAG+TGG - chr1_3:13655834-13655853 Msa0105270:intron 35.0%
! CTATTTTGCAAGGAGATAGT+GGG - chr1_3:13655835-13655854 Msa0105270:intron 35.0%
! TATTTTGCAAGGAGATAGTG+GGG - chr1_3:13655836-13655855 Msa0105270:intron 35.0%
CAAACTTTAGCACTTGTGTA+TGG - chr1_3:13656037-13656056 Msa0105270:intron 35.0%
TACCCAAGAAAGTTCAAACT+TGG - chr1_3:13656164-13656183 Msa0105270:intron 35.0%
ACCCAAGAAAGTTCAAACTT+GGG - chr1_3:13656165-13656184 Msa0105270:intron 35.0%
ACCCAAGTTTGAACTTTCTT+GGG + chr1_3:13656169-13656188 None:intergenic 35.0%
TACCCAAGTTTGAACTTTCT+TGG + chr1_3:13656170-13656189 None:intergenic 35.0%
!!! TTTTGACAAGTATTGGCCAT+TGG + chr1_3:13656210-13656229 None:intergenic 35.0%
ATGCAGAATCACCAAGATAA+CGG + chr1_3:13656261-13656280 None:intergenic 35.0%
!! CTAAGTTTTATCCCACTAAG+TGG + chr1_3:13656488-13656507 None:intergenic 35.0%
TGCTAAATATATGACCCGAA+AGG - chr1_3:13656588-13656607 Msa0105270:intron 35.0%
AATGATAGCACACAATATGC+CGG + chr1_3:13656617-13656636 None:intergenic 35.0%
ATATACCACAACACTCTGTA+AGG + chr1_3:13656722-13656741 None:intergenic 35.0%
AGGAGGATAAATTGGATACA+TGG + chr1_3:13656859-13656878 None:intergenic 35.0%
TCCAATTTATCCTCCTTACT+AGG - chr1_3:13656863-13656882 Msa0105270:intron 35.0%
CCAATTTATCCTCCTTACTA+GGG - chr1_3:13656864-13656883 Msa0105270:intron 35.0%
TATAGAAAACCCTAGTAAGG+AGG + chr1_3:13656876-13656895 None:intergenic 35.0%
GTCTATAGAAAACCCTAGTA+AGG + chr1_3:13656879-13656898 None:intergenic 35.0%
ATTGTAGAAATGGCGATAGA+TGG + chr1_3:13656922-13656941 None:intergenic 35.0%
TCTATCGCCATTTCTACAAT+AGG - chr1_3:13656922-13656941 Msa0105270:intron 35.0%
ACTACCACCTATTGTAGAAA+TGG + chr1_3:13656932-13656951 None:intergenic 35.0%
CCGTCATCATATAGAATAAC+AGG + chr1_3:13657209-13657228 None:intergenic 35.0%
! TCTCATGGTTGAAGTATCTT+GGG + chr1_3:13657234-13657253 None:intergenic 35.0%
!! AATGTAAAGCACTGACATAC+TGG + chr1_3:13657366-13657385 None:intergenic 35.0%
ATGTCAGTGCTTTACATTGT+TGG - chr1_3:13657368-13657387 Msa0105270:intron 35.0%
GTGTAATTGCTGATAGTATC+TGG - chr1_3:13657397-13657416 Msa0105270:intron 35.0%
! TATAATTAGTTTGGAGGTCC+TGG - chr1_3:13657864-13657883 Msa0105270:intron 35.0%
AGTTAAGGAGTGAAGTGATA+AGG - chr1_3:13657983-13658002 Msa0105270:intron 35.0%
!! AAACAGAGACAGGTTCTAAA+AGG - chr1_3:13658081-13658100 Msa0105270:intron 35.0%
TTGTCTGTTATACTGCAATC+TGG - chr1_3:13658250-13658269 Msa0105270:intron 35.0%
! ACATTGGTTATAGTACGTGA+TGG - chr1_3:13658460-13658479 Msa0105270:intron 35.0%
ATTGCTGCATTTCAAAGTCT+AGG - chr1_3:13658486-13658505 Msa0105270:intron 35.0%
TTGCTGCATTTCAAAGTCTA+GGG - chr1_3:13658487-13658506 Msa0105270:intron 35.0%
CAAGATCTTGTAACTAGGTT+AGG + chr1_3:13658522-13658541 None:intergenic 35.0%
TTCAGCAAGATCTTGTAACT+AGG + chr1_3:13658527-13658546 None:intergenic 35.0%
AAGTCAAACTCAAAGGCAAT+GGG + chr1_3:13658644-13658663 None:intergenic 35.0%
AAAGTCAAACTCAAAGGCAA+TGG + chr1_3:13658645-13658664 None:intergenic 35.0%
AGGAAAAGATACTCTCTGTT+AGG + chr1_3:13658714-13658733 None:intergenic 35.0%
! GTATCTTTTCCTGCTTGAAA+AGG - chr1_3:13658722-13658741 Msa0105270:intron 35.0%
AAAGTTCCTTGCCTATTTGA+AGG + chr1_3:13658752-13658771 None:intergenic 35.0%
GATCAATAACATGCTTGTCT+TGG + chr1_3:13658842-13658861 None:intergenic 35.0%
TTGATCTTGCAAATGAAGTC+AGG - chr1_3:13658856-13658875 Msa0105270:CDS 35.0%
ATTATCTCCCAACAACATTC+TGG + chr1_3:13658991-13659010 None:intergenic 35.0%
!! ATTGGGTTCTACTTTTGCAA+TGG + chr1_3:13659092-13659111 None:intergenic 35.0%
ATAACCAACCACCACAAACA+TGG - chr1_3:13653308-13653327 Msa0105270:three_prime_UTR 40.0%
CACCACAAACATGGCAATAT+GGG - chr1_3:13653317-13653336 Msa0105270:three_prime_UTR 40.0%
TACCCATATTGCCATGTTTG+TGG + chr1_3:13653322-13653341 None:intergenic 40.0%
AACTACGATGAACGTCTTGT+TGG - chr1_3:13653378-13653397 Msa0105270:three_prime_UTR 40.0%
ACACAAATTTCTCCTTGAGC+AGG + chr1_3:13653584-13653603 None:intergenic 40.0%
!! TTCATCACTTGTGCTGCTTA+AGG - chr1_3:13653645-13653664 Msa0105270:three_prime_UTR 40.0%
!! CTTATTTTCACAAGCTCTGC+AGG + chr1_3:13654107-13654126 None:intergenic 40.0%
AAGCACTTGTGAGACTGTTT+GGG + chr1_3:13654178-13654197 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG + chr1_3:13654179-13654198 None:intergenic 40.0%
TGAACCATGATCTAGAGATC+TGG + chr1_3:13654370-13654389 None:intergenic 40.0%
CTGTGAACTGACATTGTCTA+TGG + chr1_3:13654451-13654470 None:intergenic 40.0%
!! CGAAAAGGTTAGCTTCGAAT+AGG - chr1_3:13654610-13654629 Msa0105270:intron 40.0%
GTAGTCACATTACACTGTTG+TGG - chr1_3:13654648-13654667 Msa0105270:intron 40.0%
TGGAACTCACTTTGCAAAGT+CGG - chr1_3:13654674-13654693 Msa0105270:CDS 40.0%
CACTTTGCAAAGTCGGAATT+AGG - chr1_3:13654681-13654700 Msa0105270:CDS 40.0%
ATCTTTGACTGTTGGGAATC+TGG - chr1_3:13654749-13654768 Msa0105270:intron 40.0%
! ATCGCTCGTTTGAAACAATG+AGG + chr1_3:13655475-13655494 None:intergenic 40.0%
! ATCGCTCGTTTGAAACAATG+GGG + chr1_3:13655475-13655494 None:intergenic 40.0%
! TTTGGGGTGCAAAATCAGAA+AGG - chr1_3:13655431-13655450 Msa0105270:intron 40.0%
TTGGGGTGCAAAATCAGAAA+GGG - chr1_3:13655432-13655451 Msa0105270:intron 40.0%
ATCAGAAAGGGGGAAAACTA+TGG - chr1_3:13655444-13655463 Msa0105270:intron 40.0%
TCAGAAAGGGGGAAAACTAT+GGG - chr1_3:13655445-13655464 Msa0105270:intron 40.0%
! ATCGCTCGTTTGAAACAATG+GGG - chr1_3:13655475-13655494 Msa0105270:intron 40.0%
! ATCGCTCGTTTGAAACAATG+AGG - chr1_3:13655475-13655494 Msa0105270:intron 40.0%
TGTGTATGGTGAAACCTGAT+TGG - chr1_3:13656051-13656070 Msa0105270:intron 40.0%
GTGTATGGTGAAACCTGATT+GGG - chr1_3:13656052-13656071 Msa0105270:intron 40.0%
TTTCTTGGGTAACTATGTGC+AGG + chr1_3:13656155-13656174 None:intergenic 40.0%
TTGTATGCTAGGAAGTTGAC+AGG + chr1_3:13656333-13656352 None:intergenic 40.0%
ACTAAGTGGAGTTGACTACA+TGG + chr1_3:13656474-13656493 None:intergenic 40.0%
ATGTAGTCAACTCCACTTAG+TGG - chr1_3:13656473-13656492 Msa0105270:intron 40.0%
TGTAGTCAACTCCACTTAGT+GGG - chr1_3:13656474-13656493 Msa0105270:intron 40.0%
AACACTCTGTAAGGCTTACA+AGG + chr1_3:13656713-13656732 None:intergenic 40.0%
GGATGCAAAGGATTATGTTG+TGG + chr1_3:13656796-13656815 None:intergenic 40.0%
CAAGGGAAAATTGGATGCAA+AGG + chr1_3:13656808-13656827 None:intergenic 40.0%
AAGGGAAAGCAAGGGAAAAT+TGG + chr1_3:13656817-13656836 None:intergenic 40.0%
CCCTAGTAAGGAGGATAAAT+TGG + chr1_3:13656867-13656886 None:intergenic 40.0%
!! GGTTTTGGTATGTACAGAGA+AGG + chr1_3:13656901-13656920 None:intergenic 40.0%
! GAAATGGCGATAGATGGTTT+TGG + chr1_3:13656916-13656935 None:intergenic 40.0%
ATCGCCATTTCTACAATAGG+TGG - chr1_3:13656925-13656944 Msa0105270:intron 40.0%
AGATGAAAACAAGGGGTTCA+AGG + chr1_3:13657166-13657185 None:intergenic 40.0%
! CTCATGGTTGAAGTATCTTG+GGG + chr1_3:13657233-13657252 None:intergenic 40.0%
! GTCTCATGGTTGAAGTATCT+TGG + chr1_3:13657235-13657254 None:intergenic 40.0%
CTTTGGTCTCAAAAAAGCTC+TGG + chr1_3:13657487-13657506 None:intergenic 40.0%
!!! CAGAGCTTTTTTGAGACCAA+AGG - chr1_3:13657485-13657504 Msa0105270:intron 40.0%
!!! AGCTTTTTTGAGACCAAAGG+AGG - chr1_3:13657488-13657507 Msa0105270:intron 40.0%
ACGAAATAATGCACCTCCTT+TGG + chr1_3:13657504-13657523 None:intergenic 40.0%
! CATCGGTTGAAGATATTGCA+AGG - chr1_3:13657763-13657782 Msa0105270:intron 40.0%
!! TATAAGGTTAGCTTGGTGGT+TGG - chr1_3:13657952-13657971 Msa0105270:intron 40.0%
TAAGGAGTGAAGTGATAAGG+TGG - chr1_3:13657986-13658005 Msa0105270:intron 40.0%
AGTGAAGTGATAAGGTGGTT+AGG - chr1_3:13657991-13658010 Msa0105270:intron 40.0%
GTGAAGTGATAAGGTGGTTA+GGG - chr1_3:13657992-13658011 Msa0105270:intron 40.0%
ATACTGCAATCTGGTTGAAC+TGG - chr1_3:13658259-13658278 Msa0105270:intron 40.0%
TACTGCAATCTGGTTGAACT+GGG - chr1_3:13658260-13658279 Msa0105270:intron 40.0%
AAGATGAACCAGGATTGAAC+CGG + chr1_3:13658386-13658405 None:intergenic 40.0%
AGGCAAATTGTTCAAGCTGA+AGG - chr1_3:13658678-13658697 Msa0105270:intron 40.0%
GAAAAGGCTCTCCTTCAAAT+AGG - chr1_3:13658738-13658757 Msa0105270:intron 40.0%
!! GGTTCTACTTTTGCAATGGT+TGG + chr1_3:13659088-13659107 None:intergenic 40.0%
ATTGCCATGTTTGTGGTGGT+TGG + chr1_3:13653315-13653334 None:intergenic 45.0%
CCATATTGCCATGTTTGTGG+TGG + chr1_3:13653319-13653338 None:intergenic 45.0%
CCACCACAAACATGGCAATA+TGG - chr1_3:13653316-13653335 Msa0105270:three_prime_UTR 45.0%
TATCGACGTGTCTTCTACCA+AGG - chr1_3:13653414-13653433 Msa0105270:three_prime_UTR 45.0%
AGTTCTACCAGGAAACTCAG+GGG + chr1_3:13653549-13653568 None:intergenic 45.0%
CAGTTCTACCAGGAAACTCA+GGG + chr1_3:13653550-13653569 None:intergenic 45.0%
ACAGTTCTACCAGGAAACTC+AGG + chr1_3:13653551-13653570 None:intergenic 45.0%
TCCTGGTAGAACTGTCACAT+TGG - chr1_3:13653556-13653575 Msa0105270:three_prime_UTR 45.0%
TCCAATGTGACAGTTCTACC+AGG + chr1_3:13653560-13653579 None:intergenic 45.0%
ATCTGGACAGTGTAGGCTAT+TGG - chr1_3:13654766-13654785 Msa0105270:intron 45.0%
GGGGTGCAAAATCACACAAT+TGG + chr1_3:13655013-13655032 None:intergenic 45.0%
TGGGGTGCAAAATCAGAAAG+GGG - chr1_3:13655433-13655452 Msa0105270:intron 45.0%
CAGAAAGGGGGAAAACTATG+GGG - chr1_3:13655446-13655465 Msa0105270:intron 45.0%
GAGGTGCAAAATCGCACAAT+TGG - chr1_3:13655554-13655573 Msa0105270:intron 45.0%
!!! ACCAAGTTTTGGTTGGTCCA+AGG - chr1_3:13655974-13655993 Msa0105270:intron 45.0%
ACTTGGACACCTTCAACTAG+TGG - chr1_3:13656005-13656024 Msa0105270:intron 45.0%
ACACCTTCAACTAGTGGTCA+AGG - chr1_3:13656011-13656030 Msa0105270:intron 45.0%
CACCTTCAACTAGTGGTCAA+GGG - chr1_3:13656012-13656031 Msa0105270:intron 45.0%
AACCCTTGACCACTAGTTGA+AGG + chr1_3:13656017-13656036 None:intergenic 45.0%
TATGGTGAAACCTGATTGGG+AGG - chr1_3:13656055-13656074 Msa0105270:intron 45.0%
ATGGTGAAACCTGATTGGGA+GGG - chr1_3:13656056-13656075 Msa0105270:intron 45.0%
TAGTCATTGCTAAACCGCAC+TGG - chr1_3:13656119-13656138 Msa0105270:intron 45.0%
TGGGTAACTATGTGCAGGAA+GGG + chr1_3:13656150-13656169 None:intergenic 45.0%
TTGGGTAACTATGTGCAGGA+AGG + chr1_3:13656151-13656170 None:intergenic 45.0%
TGCTAGGAAGTTGACAGGAA+AGG + chr1_3:13656328-13656347 None:intergenic 45.0%
TCCTAGCATACAACCACTAG+AGG - chr1_3:13656340-13656359 Msa0105270:intron 45.0%
ACCTCTAGTGGTTGTATGCT+AGG + chr1_3:13656344-13656363 None:intergenic 45.0%
AGCATACAACCACTAGAGGT+AGG - chr1_3:13656344-13656363 Msa0105270:intron 45.0%
GCATACAACCACTAGAGGTA+GGG - chr1_3:13656345-13656364 Msa0105270:intron 45.0%
CATACAACCACTAGAGGTAG+GGG - chr1_3:13656346-13656365 Msa0105270:intron 45.0%
ATACAACCACTAGAGGTAGG+GGG - chr1_3:13656347-13656366 Msa0105270:intron 45.0%
TATATGACCCGAAAGGAGAC+CGG - chr1_3:13656595-13656614 Msa0105270:intron 45.0%
ACAATATGCCGGTCTCCTTT+CGG + chr1_3:13656606-13656625 None:intergenic 45.0%
!! GTAAGCCTTACAGAGTGTTG+TGG - chr1_3:13656714-13656733 Msa0105270:intron 45.0%
TTACACCAATGCCCCAGAAA+TGG + chr1_3:13657612-13657631 None:intergenic 45.0%
GCAATATCTTCAACCGATGC+AGG + chr1_3:13657762-13657781 None:intergenic 45.0%
!! TGCAAGGTACTGGGGATATA+AGG - chr1_3:13657936-13657955 Msa0105270:intron 45.0%
! CTGGGGATATAAGGTTAGCT+TGG - chr1_3:13657945-13657964 Msa0105270:intron 45.0%
!! GGGATATAAGGTTAGCTTGG+TGG - chr1_3:13657948-13657967 Msa0105270:intron 45.0%
TGGTTGGAGTGAGTGAGTTA+AGG - chr1_3:13657968-13657987 Msa0105270:intron 45.0%
!! ACAGTTTCTGGTTCAACCAG+CGG + chr1_3:13658176-13658195 None:intergenic 45.0%
TGGTTGAACCAGAAACTGTC+CGG - chr1_3:13658177-13658196 Msa0105270:intron 45.0%
TACTCTCTGTTAGGTCCTGT+GGG + chr1_3:13658705-13658724 None:intergenic 45.0%
ATACTCTCTGTTAGGTCCTG+TGG + chr1_3:13658706-13658725 None:intergenic 45.0%
!!! AATATTTTTATTATTTTTTG+GGG + chr1_3:13655061-13655080 None:intergenic 5.0%
!!! GAATATTTTTATTATTTTTT+GGG + chr1_3:13655062-13655081 None:intergenic 5.0%
!!! TGAATATTTTTATTATTTTT+TGG + chr1_3:13655063-13655082 None:intergenic 5.0%
!!! ATTTTCAAAATTTTTAAAAA+AGG - chr1_3:13655190-13655209 Msa0105270:intron 5.0%
!!! AAATTTAATTTTTAAAAATC+TGG - chr1_3:13655228-13655247 Msa0105270:intron 5.0%
!! GTGCTGCTTAAGGCCTTGTT+TGG - chr1_3:13653655-13653674 Msa0105270:three_prime_UTR 50.0%
GTTGGGAATCTGGACAGTGT+AGG - chr1_3:13654759-13654778 Msa0105270:intron 50.0%
GGGGTGCAAAATCAGAAAGG+GGG - chr1_3:13655434-13655453 Msa0105270:intron 50.0%
GGGGTGCAAAATCGCACAAT+TGG - chr1_3:13655494-13655513 Msa0105270:intron 50.0%
GCCTTGGACCAACCAAAACT+TGG + chr1_3:13655978-13655997 None:intergenic 50.0%
! TTTGGTTGGTCCAAGGCGTA+AGG - chr1_3:13655981-13656000 Msa0105270:intron 50.0%
TGTCCAAGTTCCTTACGCCT+TGG + chr1_3:13655994-13656013 None:intergenic 50.0%
TGGTGAAACCTGATTGGGAG+GGG - chr1_3:13656057-13656076 Msa0105270:intron 50.0%
TGAATTCTCCCCTCCCAATC+AGG + chr1_3:13656068-13656087 None:intergenic 50.0%
CAATATGCCGGTCTCCTTTC+GGG + chr1_3:13656605-13656624 None:intergenic 50.0%
GCTGATAGTATCTGGGAGTG+CGG - chr1_3:13657405-13657424 Msa0105270:intron 50.0%
! CTGATAGTATCTGGGAGTGC+GGG - chr1_3:13657406-13657425 Msa0105270:intron 50.0%
TGCGGGAGAAGCAATACGAT+CGG - chr1_3:13657423-13657442 Msa0105270:intron 50.0%
GGAGAAGCAATACGATCGGA+AGG - chr1_3:13657427-13657446 Msa0105270:intron 50.0%
CTACAACGCCAGCCATTTCT+GGG - chr1_3:13657597-13657616 Msa0105270:intron 50.0%
TACAACGCCAGCCATTTCTG+GGG - chr1_3:13657598-13657617 Msa0105270:intron 50.0%
CAAAGCAACCGGACAGTTTC+TGG + chr1_3:13658188-13658207 None:intergenic 50.0%
GTCATCATCCGGTTCAATCC+TGG - chr1_3:13658375-13658394 Msa0105270:intron 50.0%
!! GAAGGAGAGCCTTTTCAAGC+AGG + chr1_3:13658734-13658753 None:intergenic 50.0%
GGCTCTCCTTCAAATAGGCA+AGG - chr1_3:13658743-13658762 Msa0105270:intron 50.0%
AGAGGAACCCCTGAGTTTCC+TGG - chr1_3:13653539-13653558 Msa0105270:three_prime_UTR 55.0%
GTCACATTGGAGCCTGCTCA+AGG - chr1_3:13653569-13653588 Msa0105270:three_prime_UTR 55.0%
GGTCCAAGGCGTAAGGAACT+TGG - chr1_3:13655988-13656007 Msa0105270:intron 55.0%
!! CAGGAAGGGAGTATCCAGTG+CGG + chr1_3:13656136-13656155 None:intergenic 55.0%
GCGTTGTAGCAGTAAGCTCC+TGG + chr1_3:13657586-13657605 None:intergenic 55.0%
GCTACAACGCCAGCCATTTC+TGG - chr1_3:13657596-13657615 Msa0105270:intron 55.0%
ACCAATGCCCCAGAAATGGC+TGG + chr1_3:13657608-13657627 None:intergenic 55.0%
AGTTTGGAGGTCCTGGCTTC+AGG - chr1_3:13657871-13657890 Msa0105270:intron 55.0%
TTCATAGGCCTCCTGAAGCC+AGG + chr1_3:13657885-13657904 None:intergenic 55.0%
! TCTGGTTCAACCAGCGGAAC+AGG + chr1_3:13658170-13658189 None:intergenic 55.0%
GTTCAAGCTGAAGGTCCCAC+AGG - chr1_3:13658687-13658706 Msa0105270:intron 55.0%
AGGTCTCCCCCTACCTCTAG+TGG + chr1_3:13656356-13656375 None:intergenic 60.0%
CTAGAGGTAGGGGGAGACCT+AGG - chr1_3:13656356-13656375 Msa0105270:intron 60.0%
!! GCCAGCCATTTCTGGGGCAT+TGG - chr1_3:13657604-13657623 Msa0105270:intron 60.0%
TTGGAGGTCCTGGCTTCAGG+AGG - chr1_3:13657874-13657893 Msa0105270:intron 60.0%
! ACCAAACTGGCCTGTTCCGC+TGG - chr1_3:13658157-13658176 Msa0105270:intron 60.0%
ACCAGCGGAACAGGCCAGTT+TGG + chr1_3:13658161-13658180 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 13653212 13659243 13653212 ID=Msa0105270;Name=Msa0105270
chr1_3 mRNA 13653212 13659243 13653212 ID=Msa0105270-mRNA-1;Parent=Msa0105270;Name=Msa0105270-mRNA-1;_AED=0.11;_eAED=0.11;_QI=115|0.8|1|1|1|1|6|470|149
chr1_3 exon 13653212 13653775 13653212 ID=Msa0105270-mRNA-1:exon:5385;Parent=Msa0105270-mRNA-1
chr1_3 exon 13654671 13654742 13654671 ID=Msa0105270-mRNA-1:exon:5384;Parent=Msa0105270-mRNA-1
chr1_3 exon 13654828 13654868 13654828 ID=Msa0105270-mRNA-1:exon:5383;Parent=Msa0105270-mRNA-1
chr1_3 exon 13654986 13655042 13654986 ID=Msa0105270-mRNA-1:exon:5382;Parent=Msa0105270-mRNA-1
chr1_3 exon 13658854 13658930 13658854 ID=Msa0105270-mRNA-1:exon:5381;Parent=Msa0105270-mRNA-1
chr1_3 exon 13659020 13659243 13659020 ID=Msa0105270-mRNA-1:exon:5380;Parent=Msa0105270-mRNA-1
chr1_3 five_prime_UTR 13659129 13659243 13659129 ID=Msa0105270-mRNA-1:five_prime_utr;Parent=Msa0105270-mRNA-1
chr1_3 CDS 13659020 13659128 13659020 ID=Msa0105270-mRNA-1:cds;Parent=Msa0105270-mRNA-1
chr1_3 CDS 13658854 13658930 13658854 ID=Msa0105270-mRNA-1:cds;Parent=Msa0105270-mRNA-1
chr1_3 CDS 13654986 13655042 13654986 ID=Msa0105270-mRNA-1:cds;Parent=Msa0105270-mRNA-1
chr1_3 CDS 13654828 13654868 13654828 ID=Msa0105270-mRNA-1:cds;Parent=Msa0105270-mRNA-1
chr1_3 CDS 13654671 13654742 13654671 ID=Msa0105270-mRNA-1:cds;Parent=Msa0105270-mRNA-1
chr1_3 CDS 13653682 13653775 13653682 ID=Msa0105270-mRNA-1:cds;Parent=Msa0105270-mRNA-1
chr1_3 three_prime_UTR 13653212 13653681 13653212 ID=Msa0105270-mRNA-1:three_prime_utr;Parent=Msa0105270-mRNA-1
Gene Sequence

>Msa0105270

ATGGCAATATGGGTATTTGGTTACGGTTCTTTGATTTCAAAAGCAGGTTTTAACTACGATGAACGTCTTGTTGGTTTCATCAAAGATTATCGACGTGTCTTCTACCAAGGTTCTACTGATCATAGAGGAACCCCTGAGTTTCCTGGTAGAACTGTCACATTGGAGCCTGCTCAAGGAGAAATTTGTTATCTGGGAGTGCGGGAGAAGCAATACGATCGGAAGGAATATGTCGATGTTTTCACTGAGCTTACTGCTACAACGCCAGCCATTTCTGGGGCATTGGTATATATAGCATCCCCAGACAAGAAAGTTAATGTTAATTATTTAGGTCCTGCATCGGTTGAAGATATTGCAAGGCAAATTGTTCAAGCTGAAGGTCCCACAGGACCTAACAGAGAGTATCTTTTCCTGCTTGAAAAGGCTCTCCTTCAAATAGGCAAGGAACTTTAA
Protein sequence

>Msa0105270

MAIWVFGYGSLISKAGFNYDERLVGFIKDYRRVFYQGSTDHRGTPEFPGRTVTLEPAQGEICYLGVREKQYDRKEYVDVFTELTATTPAISGALVYIASPDKKVNVNYLGPASVEDIARQIVQAEGPTGPNREYLFLLEKALLQIGKEL*