AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341790 MtrunA17_Chr8g0347681 99.296 284 2 0 1 284 1 284 0.0 568
Msa1341790 MtrunA17_Chr2g0330111 56.690 284 122 1 2 284 47 330 8.35e-112 326
Msa1341790 MtrunA17_Chr8g0389841 30.000 280 193 3 2 279 37 315 8.75e-41 144
Msa1341790 MtrunA17_Chr8g0380761 29.391 279 190 4 2 274 15 292 6.94e-35 127
Msa1341790 MtrunA17_Chr2g0292541 28.283 297 193 4 2 278 41 337 3.88e-27 108
Msa1341790 MtrunA17_Chr6g0478521 26.298 289 206 4 2 283 326 614 3.22e-20 90.9
Msa1341790 MtrunA17_Chr6g0478521 25.641 273 182 5 3 263 7 270 1.59e-17 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341790 AT3G25530.1 82.105 285 50 1 1 284 1 285 3.04e-172 478
Msa1341790 AT3G25530.2 78.521 284 51 1 1 284 1 274 2.90e-163 454
Msa1341790 AT3G25530.3 81.463 205 37 1 1 204 1 205 1.26e-121 346
Msa1341790 AT1G17650.2 57.895 285 119 1 1 284 8 292 1.47e-113 329
Msa1341790 AT1G17650.1 57.895 285 119 1 1 284 67 351 5.28e-113 330
Msa1341790 AT4G29120.1 31.071 280 190 3 2 279 39 317 5.13e-39 139
Msa1341790 AT4G20930.1 33.221 298 177 6 3 279 40 336 5.10e-33 124
Msa1341790 AT1G18270.1 28.767 292 195 6 2 283 323 611 6.30e-25 104
Msa1341790 AT1G18270.1 24.364 275 203 4 3 273 5 278 1.93e-16 80.1
Msa1341790 AT1G18270.2 28.767 292 195 6 2 283 324 612 6.30e-25 104
Msa1341790 AT1G18270.2 24.275 276 203 5 3 273 5 279 6.86e-15 75.5
Msa1341790 AT1G18270.3 28.767 292 195 6 2 283 323 611 6.38e-25 104
Msa1341790 AT1G18270.3 24.364 275 203 4 3 273 5 278 1.62e-16 80.1
Msa1341790 AT1G18270.4 28.767 292 195 6 2 283 323 611 6.81e-25 104
Msa1341790 AT1G18270.4 24.364 275 203 4 3 273 5 278 1.57e-16 80.1
Msa1341790 AT4G20930.2 31.679 262 157 6 39 279 4 264 5.21e-24 98.6
Msa1341790 AT1G71170.1 26.103 272 195 3 14 284 27 293 8.91e-19 84.7
Msa1341790 AT1G71180.1 25.862 232 170 2 9 239 43 273 2.72e-16 77.8

Find 87 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTCCAGTGTAATAGTATT+TGG 0.145162 tig0004863:+6545 None:intergenic
CGGAAAGAAATCTTTCTTTC+TGG 0.164012 tig0004863:-8142 Msa1341790:CDS
TTTAAACATGCCGTTACTTA+TGG 0.260989 tig0004863:+7383 None:intergenic
TTTCTTGAAGCTCCTGTTTC+GGG 0.271355 tig0004863:-9483 Msa1341790:CDS
GTCTCCCAACCCCATGCTTC+TGG 0.280528 tig0004863:+6919 None:intergenic
CAATATATCAGAGCCATTAA+TGG 0.299577 tig0004863:+10703 None:intergenic
CTTTCTTGAAGCTCCTGTTT+CGG 0.310097 tig0004863:-9484 Msa1341790:CDS
GATTTATAATCATCCATTAA+TGG 0.312314 tig0004863:-10716 Msa1341790:five_prime_UTR
GGAAAGAAATCTTTCTTTCT+GGG 0.319830 tig0004863:-8141 Msa1341790:CDS
GGTGTTCTTGAGCAAATTAA+TGG 0.328976 tig0004863:-10090 Msa1341790:CDS
ATCTGATCCTGCAGCTGCTT+TGG 0.357743 tig0004863:-10216 Msa1341790:CDS
CATTTATGTTAGCGGACATA+TGG 0.372497 tig0004863:+6616 None:intergenic
TTGGAACAGAACCCTCTCTA+AGG 0.382938 tig0004863:-10507 Msa1341790:intron
ATATTGATTGATGATTATAA+AGG 0.392346 tig0004863:-10686 Msa1341790:five_prime_UTR
TTTCTGGGTGAGGTTGGAAA+TGG 0.402461 tig0004863:-8126 Msa1341790:CDS
CTTGTTGTCAACATGGTAAT+GGG 0.402762 tig0004863:-8090 Msa1341790:CDS
CTTGAGCAAATTAATGGAAA+AGG 0.410887 tig0004863:-10084 Msa1341790:CDS
ACTCCAGTGTAATAGTATTT+GGG 0.415175 tig0004863:+6546 None:intergenic
CCTTCTACGACATGGCTTCA+AGG 0.424952 tig0004863:-10537 Msa1341790:CDS
ATGGCTTCAAGGTCACTGTT+TGG 0.430943 tig0004863:-10526 Msa1341790:CDS
GCTGCAGCTGCGACAGGCAT+TGG 0.436252 tig0004863:+7252 None:intergenic
CATTTAAAAGGTATATGAAT+AGG 0.440236 tig0004863:-6585 Msa1341790:three_prime_UTR
TCATTTGCTGCAGCTGCGAC+AGG 0.445970 tig0004863:+7246 None:intergenic
GAAATCTTTCTTTCTGGGTG+AGG 0.451195 tig0004863:-8136 Msa1341790:CDS
TAGGTTGTGTTTGATAAAGA+TGG 0.455532 tig0004863:-10111 Msa1341790:CDS
TCTTTCTTTCTGGGTGAGGT+TGG 0.457974 tig0004863:-8132 Msa1341790:CDS
CATTTCTTGACTACAGCTGC+AGG 0.460650 tig0004863:+10260 None:intergenic
TATTAGCTAGCGCATGGATT+CGG 0.463266 tig0004863:-6671 Msa1341790:three_prime_UTR
GGCTTCTTACTACCCGAAAC+AGG 0.467901 tig0004863:+9471 None:intergenic
ATTGATGATTATAAAGGAAA+GGG 0.468687 tig0004863:-10680 Msa1341790:five_prime_UTR
GCCTAAAACATTTATGTTAG+CGG 0.469447 tig0004863:+6608 None:intergenic
AACGGCATGTTTAAATTGAA+AGG 0.477158 tig0004863:-7375 Msa1341790:CDS
TCACTTGCAGTAGATTGTAT+TGG 0.477324 tig0004863:-6639 Msa1341790:three_prime_UTR
ATGAGACTGGCTCTTGCCCT+TGG 0.477610 tig0004863:-7291 Msa1341790:CDS
ATATATGAAATGACTGTTTG+AGG 0.479526 tig0004863:-6772 Msa1341790:three_prime_UTR
CCTTGAAGCCATGTCGTAGA+AGG 0.480862 tig0004863:+10537 None:intergenic
AAAGCCAGAAGCATGGGGTT+GGG 0.482519 tig0004863:-6923 Msa1341790:CDS
CTGACCGCCAAAGCAGCTGC+AGG 0.484117 tig0004863:+10209 None:intergenic
ACTAGTTGGCCATCTTCTGC+AGG 0.484133 tig0004863:+9450 None:intergenic
TTCAAGAAAGCCAGAAGCAT+GGG 0.486636 tig0004863:-6929 Msa1341790:CDS
TGATGTTTCAGTGGAAAAGC+AGG 0.487430 tig0004863:+7324 None:intergenic
TGATCCTGCAGCTGCTTTGG+CGG 0.494937 tig0004863:-10213 Msa1341790:intron
TGAAGAGTGCAAAAGTTACA+AGG 0.495712 tig0004863:+6707 None:intergenic
ACAGTCATTTCATATATATG+TGG 0.498050 tig0004863:+6778 None:intergenic
GAAAGCCAGAAGCATGGGGT+TGG 0.500182 tig0004863:-6924 Msa1341790:CDS
ACTTGTTGTCAACATGGTAA+TGG 0.503001 tig0004863:-8091 Msa1341790:CDS
TTTCCGAGTACATCAAATGC+TGG 0.504336 tig0004863:+8159 None:intergenic
GCGCACTCTCGTGTGTGCAT+TGG 0.513139 tig0004863:+6514 None:intergenic
AGTAAGAAGCCTGCAGAAGA+TGG 0.513694 tig0004863:-9459 Msa1341790:CDS
TGAAATGAATAACCTTAGAG+AGG 0.515209 tig0004863:+10495 None:intergenic
TAGCACACTTCTTGATGTGC+TGG 0.519966 tig0004863:-7493 Msa1341790:intron
GATTGATGATTATAAAGGAA+AGG 0.522726 tig0004863:-10681 Msa1341790:five_prime_UTR
CTACAGGCAATCAAAGCAAA+AGG 0.523095 tig0004863:-9513 Msa1341790:intron
TGTCGCAGCTGCAGCAAATG+AGG 0.525255 tig0004863:-7244 Msa1341790:intron
CGGCAGCAAGTATAACTAGT+TGG 0.527224 tig0004863:+9436 None:intergenic
CGTCCAGCATTTGATGTACT+CGG 0.541456 tig0004863:-8162 Msa1341790:CDS
ATACCCAAATACTATTACAC+TGG 0.544996 tig0004863:-6549 Msa1341790:three_prime_UTR
GTGGAACATGGTGCTTCAGT+TGG 0.546562 tig0004863:-10290 Msa1341790:CDS
ATGATGAATGCTTTCTCTGA+GGG 0.550025 tig0004863:-7549 Msa1341790:CDS
TGAAATGACTGTTTGAGGAT+AGG 0.552450 tig0004863:-6767 Msa1341790:three_prime_UTR
AGCACATCAAGAAGTGTGCT+AGG 0.569454 tig0004863:+7495 None:intergenic
TCCTTCTGCTGATGTTTCAG+TGG 0.571359 tig0004863:+7315 None:intergenic
ATTCAAGAAAGCCAGAAGCA+TGG 0.581643 tig0004863:-6930 Msa1341790:CDS
TCGTAGAAGGTTAATTGACA+TGG 0.582120 tig0004863:+10550 None:intergenic
GATCTTGGGGCCATAAGTAA+CGG 0.585908 tig0004863:-7393 Msa1341790:CDS
TCCACTGAAACATCAGCAGA+AGG 0.591596 tig0004863:-7316 Msa1341790:CDS
CAACTAGTTATACTTGCTGC+CGG 0.591719 tig0004863:-9435 Msa1341790:CDS
CTGACACTTGCTGAAAGAAG+TGG 0.597037 tig0004863:-7525 Msa1341790:CDS
TCAGCAGAAGGACATGAGAC+TGG 0.601633 tig0004863:-7304 Msa1341790:CDS
GAAATGAATAACCTTAGAGA+GGG 0.604564 tig0004863:+10496 None:intergenic
TATACTTGCTGCCGGAGACA+AGG 0.610187 tig0004863:-9427 Msa1341790:intron
GATGTTTCAGTGGAAAAGCA+GGG 0.610233 tig0004863:+7325 None:intergenic
AATGAAACTTGTTGTCAACA+TGG 0.623343 tig0004863:-8097 Msa1341790:CDS
TCAATTAACCTTCTACGACA+TGG 0.625289 tig0004863:-10545 Msa1341790:CDS
GACATCTATCAAGATATCTG+AGG 0.630486 tig0004863:-10031 Msa1341790:intron
AGGAAAGGGTCTTTATCGAG+AGG 0.633353 tig0004863:-10666 Msa1341790:five_prime_UTR
GCACATCAAGAAGTGTGCTA+GGG 0.636852 tig0004863:+7496 None:intergenic
TTGTCAACATGGTAATGGGA+AGG 0.637666 tig0004863:-8086 Msa1341790:intron
GATAGATGTCTCAGCATCAA+CGG 0.646112 tig0004863:+10044 None:intergenic
TATGATGAATGCTTTCTCTG+AGG 0.646238 tig0004863:-7550 Msa1341790:CDS
ATTGTAGTGTGATGAACTCG+TGG 0.657844 tig0004863:-10309 Msa1341790:intron
TGTGATGAACTCGTGGAACA+TGG 0.661566 tig0004863:-10302 Msa1341790:CDS
ATGTTTCAGTGGAAAAGCAG+GGG 0.666554 tig0004863:+7326 None:intergenic
GTATTTGGGTATAACACACA+AGG 0.667216 tig0004863:+6560 None:intergenic
CAGGCAATCAAAGCAAAAGG+TGG 0.667806 tig0004863:-9510 Msa1341790:CDS
TCAAGAAAGCCAGAAGCATG+GGG 0.690032 tig0004863:-6928 Msa1341790:CDS
TATTTGGGTATAACACACAA+GGG 0.720929 tig0004863:+6561 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCTTTTTGTTATGAT+TGG + tig0004863:6513-6532 None:intergenic 15.0%
!!! ATATTGATTGATGATTATAA+AGG - tig0004863:6603-6622 Msa1341790:three_prime_UTR 15.0%
!!! ATTGAAAGTTTCTATTTTTA+GGG - tig0004863:7375-7394 Msa1341790:CDS 15.0%
!! TAAGTTATTTATCAAAAACA+CGG + tig0004863:9339-9358 None:intergenic 15.0%
!! GATTTATAATCATCCATTAA+TGG - tig0004863:6573-6592 Msa1341790:three_prime_UTR 20.0%
!!! ATTGATGATTATAAAGGAAA+GGG - tig0004863:6609-6628 Msa1341790:three_prime_UTR 20.0%
!! CTTATGTATAATAAGCTATT+TGG + tig0004863:6848-6867 None:intergenic 20.0%
!!! TGCAGTTATTATTTTGAATT+TGG - tig0004863:7350-7369 Msa1341790:CDS 20.0%
!! CTAAAAATAGAAACTTTCAA+TGG + tig0004863:7376-7395 None:intergenic 20.0%
!!! CATTGAAAGTTTCTATTTTT+AGG - tig0004863:7374-7393 Msa1341790:CDS 20.0%
!! TAATTCTTGCATTCAAAATT+AGG + tig0004863:7479-7498 None:intergenic 20.0%
!! TAAGTTGCAATTTATATCAA+AGG + tig0004863:7740-7759 None:intergenic 20.0%
!! TTCAATAATGCAATCTAAAA+TGG + tig0004863:8263-8282 None:intergenic 20.0%
!! TTTAGATTGCATTATTGAAA+AGG - tig0004863:8264-8283 Msa1341790:intron 20.0%
!! GAAAATAAAGTTGTTAGAAA+AGG - tig0004863:8311-8330 Msa1341790:intron 20.0%
!!! TTGTAGTTTTTCATTTTCAA+CGG + tig0004863:9033-9052 None:intergenic 20.0%
!!! CCACTGAAATTTAATTTATA+TGG + tig0004863:9071-9090 None:intergenic 20.0%
!! CCATATAAATTAAATTTCAG+TGG - tig0004863:9068-9087 Msa1341790:intron 20.0%
!! TATAAATTAAATTTCAGTGG+TGG - tig0004863:9071-9090 Msa1341790:intron 20.0%
!! CTAATCTGAATTTATCTAAT+AGG + tig0004863:9589-9608 None:intergenic 20.0%
!! ATTCTCAGAATGTTAATAAA+AGG + tig0004863:9856-9875 None:intergenic 20.0%
!!! ATATCTGTGATATTTTTTGA+AGG - tig0004863:9874-9893 Msa1341790:intron 20.0%
!!! CTATTCATATACCTTTTAAA+TGG + tig0004863:10706-10725 None:intergenic 20.0%
!!! CATTTAAAAGGTATATGAAT+AGG - tig0004863:10704-10723 Msa1341790:five_prime_UTR 20.0%
!! GATTGATGATTATAAAGGAA+AGG - tig0004863:6608-6627 Msa1341790:three_prime_UTR 25.0%
!! AAAATGGAGATTGGATTTTT+AGG - tig0004863:6696-6715 Msa1341790:three_prime_UTR 25.0%
! ATAAGCACTTATTTCATAAG+TGG - tig0004863:6863-6882 Msa1341790:three_prime_UTR 25.0%
! TTAAGTACGAGAAAACAAAT+AGG + tig0004863:7135-7154 None:intergenic 25.0%
! GCATATATTCAAACATTCTA+CGG + tig0004863:7536-7555 None:intergenic 25.0%
! GTTCTGTATTTATGAATCAA+TGG - tig0004863:7613-7632 Msa1341790:intron 25.0%
! GTAACTATATTTGCATATCA+AGG - tig0004863:7645-7664 Msa1341790:intron 25.0%
!!! ATGATAATCGACTTTTCAAA+TGG - tig0004863:7700-7719 Msa1341790:intron 25.0%
! ATTTAAAAATACCTTGTCTC+CGG + tig0004863:7876-7895 None:intergenic 25.0%
! AAAGTAATACTTCAGATAGA+AGG + tig0004863:8052-8071 None:intergenic 25.0%
!! TATTACTTTAAGTTCCCAAA+AGG - tig0004863:8063-8082 Msa1341790:intron 25.0%
! TAATGAGATGACAATAAATG+TGG - tig0004863:8141-8160 Msa1341790:CDS 25.0%
! TTAAAATGAAATCGAAAAGC+TGG + tig0004863:8400-8419 None:intergenic 25.0%
! GAATTGAACCAATTTAAACA+AGG + tig0004863:8472-8491 None:intergenic 25.0%
! TACGTCTCTTCTATATAAAA+GGG + tig0004863:8676-8695 None:intergenic 25.0%
! CTTTATCATATGAAAGCTTA+TGG + tig0004863:8743-8762 None:intergenic 25.0%
! CATAAGCTTTCATATGATAA+AGG - tig0004863:8741-8760 Msa1341790:intron 25.0%
! TCATTACAGTTTAGTCTATT+TGG + tig0004863:8894-8913 None:intergenic 25.0%
! AGTAGATTTATTGTATAGGA+GGG + tig0004863:8959-8978 None:intergenic 25.0%
! AGAGAGTAGATTTATTGTAT+AGG + tig0004863:8963-8982 None:intergenic 25.0%
! ATACAATAAATCTACTCTCT+AGG - tig0004863:8963-8982 Msa1341790:intron 25.0%
! TGAATCAGAAAACAAGAAAA+TGG - tig0004863:9313-9332 Msa1341790:intron 25.0%
! GCATATTAGCATTTCTTATT+TGG - tig0004863:9641-9660 Msa1341790:intron 25.0%
!!! TGATATTTTTTGAAGGATCT+TGG - tig0004863:9881-9900 Msa1341790:intron 25.0%
!!! GATATTTTTTGAAGGATCTT+GGG - tig0004863:9882-9901 Msa1341790:intron 25.0%
!!! ATATTTTTTGAAGGATCTTG+GGG - tig0004863:9883-9902 Msa1341790:intron 25.0%
!!! TAACTGTTTTTAAGCATTGT+TGG + tig0004863:9941-9960 None:intergenic 25.0%
! CGCATGTATATATTATAATG+AGG - tig0004863:10100-10119 Msa1341790:CDS 25.0%
! GTCTGTTGAAAGTTATTTAA+TGG - tig0004863:10133-10152 Msa1341790:intron 25.0%
!! TATCTGATAGTCACATATTT+TGG + tig0004863:10265-10284 None:intergenic 25.0%
! ACAGTCATTTCATATATATG+TGG + tig0004863:10514-10533 None:intergenic 25.0%
! ATATATGAAATGACTGTTTG+AGG - tig0004863:10517-10536 Msa1341790:CDS 25.0%
!!! AATGTTTTAGGCCATTTAAA+AGG - tig0004863:10692-10711 Msa1341790:five_prime_UTR 25.0%
CAATATATCAGAGCCATTAA+TGG + tig0004863:6589-6608 None:intergenic 30.0%
CAGTGAATTAGTTGCAAAAA+TGG - tig0004863:6680-6699 Msa1341790:three_prime_UTR 30.0%
TTAGTTGCAAAAATGGAGAT+TGG - tig0004863:6687-6706 Msa1341790:three_prime_UTR 30.0%
!!! GAGATTGGATTTTTAGGTTT+GGG - tig0004863:6702-6721 Msa1341790:three_prime_UTR 30.0%
!!! AGATTGGATTTTTAGGTTTG+GGG - tig0004863:6703-6722 Msa1341790:three_prime_UTR 30.0%
!!! ATTTTTAGGTTTGGGGATAA+TGG - tig0004863:6710-6729 Msa1341790:three_prime_UTR 30.0%
!!! TTTTTAGGTTTGGGGATAAT+GGG - tig0004863:6711-6730 Msa1341790:three_prime_UTR 30.0%
GAAATGAATAACCTTAGAGA+GGG + tig0004863:6796-6815 None:intergenic 30.0%
TGAAATGAATAACCTTAGAG+AGG + tig0004863:6797-6816 None:intergenic 30.0%
! GTTTTATAGAACTCTACTTG+TGG - tig0004863:6909-6928 Msa1341790:CDS 30.0%
CTAAACAATTCAACACGAAA+CGG + tig0004863:7161-7180 None:intergenic 30.0%
TAGGTTGTGTTTGATAAAGA+TGG - tig0004863:7178-7197 Msa1341790:intron 30.0%
CTTGAGCAAATTAATGGAAA+AGG - tig0004863:7205-7224 Msa1341790:intron 30.0%
! CTGCAATCAATCACATATTT+TGG + tig0004863:7335-7354 None:intergenic 30.0%
! ATAGTACTGGAGATTATGTT+TGG - tig0004863:7421-7440 Msa1341790:intron 30.0%
ACTTAGTCAATGAAATGTAG+TGG + tig0004863:7595-7614 None:intergenic 30.0%
!! ATCGACTTTTCAAATGGAAT+TGG - tig0004863:7706-7725 Msa1341790:intron 30.0%
! TAATGCAATCTAAAATGGAC+TGG + tig0004863:8258-8277 None:intergenic 30.0%
! AATGCCAACCTTGTTTAAAT+TGG - tig0004863:8461-8480 Msa1341790:intron 30.0%
TGAACCAATTTAAACAAGGT+TGG + tig0004863:8468-8487 None:intergenic 30.0%
AAACTAAGTTGCTACAGTAA+CGG + tig0004863:8500-8519 None:intergenic 30.0%
GCCTTGTAATTGTATTTATG+CGG - tig0004863:8615-8634 Msa1341790:intron 30.0%
ACCGCATAAATACAATTACA+AGG + tig0004863:8619-8638 None:intergenic 30.0%
TGTATTTATGCGGTTATAGT+AGG - tig0004863:8625-8644 Msa1341790:intron 30.0%
CTCTTCTATATAAAAGGGAA+CGG + tig0004863:8671-8690 None:intergenic 30.0%
CTACGTCTCTTCTATATAAA+AGG + tig0004863:8677-8696 None:intergenic 30.0%
ACAAATCATGTACAGTAATC+AGG + tig0004863:8936-8955 None:intergenic 30.0%
GAGTAGATTTATTGTATAGG+AGG + tig0004863:8960-8979 None:intergenic 30.0%
GGAAAGAAATCTTTCTTTCT+GGG - tig0004863:9148-9167 Msa1341790:intron 30.0%
!! AATGAAACTTGTTGTCAACA+TGG - tig0004863:9192-9211 Msa1341790:intron 30.0%
TTATGAACAGAAGGAGAAAA+CGG + tig0004863:9241-9260 None:intergenic 30.0%
TTCTCCTTCTGTTCATAATT+TGG - tig0004863:9243-9262 Msa1341790:intron 30.0%
ACTTCCAAATTATGAACAGA+AGG + tig0004863:9250-9269 None:intergenic 30.0%
TCTGTTCATAATTTGGAAGT+AGG - tig0004863:9250-9269 Msa1341790:intron 30.0%
TTCATAATTTGGAAGTAGGA+AGG - tig0004863:9254-9273 Msa1341790:intron 30.0%
GGAAATATGAAAACATCCTA+TGG - tig0004863:9492-9511 Msa1341790:CDS 30.0%
TATGCAATCTGGATGAATTT+GGG + tig0004863:9626-9645 None:intergenic 30.0%
ATATGCAATCTGGATGAATT+TGG + tig0004863:9627-9646 None:intergenic 30.0%
AGAAATGCTAATATGCAATC+TGG + tig0004863:9637-9656 None:intergenic 30.0%
GAAAATAAAGACATGCAATC+TGG + tig0004863:9674-9693 None:intergenic 30.0%
TTTAAACATGCCGTTACTTA+TGG + tig0004863:9909-9928 None:intergenic 30.0%
AACGGCATGTTTAAATTGAA+AGG - tig0004863:9914-9933 Msa1341790:intron 30.0%
TTGTAGCATTCATAGTTAGA+TGG - tig0004863:10206-10225 Msa1341790:intron 30.0%
TAAAGTTTGAACTCGTTTGT+AGG - tig0004863:10335-10354 Msa1341790:intron 30.0%
! AAATTTTATTAGCTAGCGCA+TGG - tig0004863:10612-10631 Msa1341790:exon 30.0%
! TCCGCTAACATAAATGTTTT+AGG - tig0004863:10680-10699 Msa1341790:five_prime_UTR 30.0%
GCCTAAAACATTTATGTTAG+CGG + tig0004863:10684-10703 None:intergenic 30.0%
TATTTGGGTATAACACACAA+GGG + tig0004863:10731-10750 None:intergenic 30.0%
ATACCCAAATACTATTACAC+TGG - tig0004863:10740-10759 Msa1341790:five_prime_UTR 30.0%
ACTCCAGTGTAATAGTATTT+GGG + tig0004863:10746-10765 None:intergenic 30.0%
TACTCCAGTGTAATAGTATT+TGG + tig0004863:10747-10766 None:intergenic 30.0%
!!! GGAGATTGGATTTTTAGGTT+TGG - tig0004863:6701-6720 Msa1341790:three_prime_UTR 35.0%
TCGTAGAAGGTTAATTGACA+TGG + tig0004863:6742-6761 None:intergenic 35.0%
TCAATTAACCTTCTACGACA+TGG - tig0004863:6744-6763 Msa1341790:three_prime_UTR 35.0%
CGTTTCGTGTTGAATTGTTT+AGG - tig0004863:7159-7178 Msa1341790:intron 35.0%
GGTGTTCTTGAGCAAATTAA+TGG - tig0004863:7199-7218 Msa1341790:intron 35.0%
GACATCTATCAAGATATCTG+AGG - tig0004863:7258-7277 Msa1341790:CDS 35.0%
ATATTCAAACATTCTACGGC+AGG + tig0004863:7532-7551 None:intergenic 35.0%
TTTGATTGCCTGTAGAAAGT+AGG + tig0004863:7771-7790 None:intergenic 35.0%
GAATAGTGCAACTCTCTAAA+TGG + tig0004863:7960-7979 None:intergenic 35.0%
AAAACACACACTCGTTTGAA+AGG + tig0004863:8022-8041 None:intergenic 35.0%
! ACTCCAGTGTATTTCCTTTT+GGG + tig0004863:8080-8099 None:intergenic 35.0%
GTTAGAAAAGGATGTTGAAG+AGG - tig0004863:8323-8342 Msa1341790:intron 35.0%
!! CTTAGTTTGTGAGAGAGAAA+TGG - tig0004863:8512-8531 Msa1341790:intron 35.0%
TTACAAGGCATACAATTGCA+AGG + tig0004863:8604-8623 None:intergenic 35.0%
TTCTATATAAAAGGGAACGG+TGG + tig0004863:8668-8687 None:intergenic 35.0%
GGCAAGTATAACACTTCAAA+TGG + tig0004863:8722-8741 None:intergenic 35.0%
TATGTGAACATTGCCGTAAT+AGG - tig0004863:8779-8798 Msa1341790:intron 35.0%
TTCGATTAAAGCCTAATGAG+AGG + tig0004863:8844-8863 None:intergenic 35.0%
! TCTCATTAGGCTTTAATCGA+AGG - tig0004863:8843-8862 Msa1341790:intron 35.0%
! CTCATTAGGCTTTAATCGAA+GGG - tig0004863:8844-8863 Msa1341790:intron 35.0%
TGAGGACAATGATAAAAGCT+GGG + tig0004863:9005-9024 None:intergenic 35.0%
CGGAAAGAAATCTTTCTTTC+TGG - tig0004863:9147-9166 Msa1341790:intron 35.0%
!! ACTTGTTGTCAACATGGTAA+TGG - tig0004863:9198-9217 Msa1341790:intron 35.0%
! CTTGTTGTCAACATGGTAAT+GGG - tig0004863:9199-9218 Msa1341790:intron 35.0%
TATGAACAGAAGGAGAAAAC+GGG + tig0004863:9240-9259 None:intergenic 35.0%
TAGCTATCATGTAGAGCTTA+TGG - tig0004863:9471-9490 Msa1341790:CDS 35.0%
TGACATATTGACAAGTCCAT+AGG + tig0004863:9511-9530 None:intergenic 35.0%
TATGATGAATGCTTTCTCTG+AGG - tig0004863:9739-9758 Msa1341790:intron 35.0%
ATGATGAATGCTTTCTCTGA+GGG - tig0004863:9740-9759 Msa1341790:intron 35.0%
! TACAGCATTTTCATCTCCAA+GGG + tig0004863:10017-10036 None:intergenic 35.0%
!! AGTCACGTGACTTTTTAAAG+TGG + tig0004863:10174-10193 None:intergenic 35.0%
TGAAATGACTGTTTGAGGAT+AGG - tig0004863:10522-10541 Msa1341790:CDS 35.0%
! TGAAGAGTGCAAAAGTTACA+AGG + tig0004863:10585-10604 None:intergenic 35.0%
TCACTTGCAGTAGATTGTAT+TGG - tig0004863:10650-10669 Msa1341790:five_prime_UTR 35.0%
! CATTTATGTTAGCGGACATA+TGG + tig0004863:10676-10695 None:intergenic 35.0%
GTATTTGGGTATAACACACA+AGG + tig0004863:10732-10751 None:intergenic 35.0%
ATTGTAGTGTGATGAACTCG+TGG - tig0004863:6980-6999 Msa1341790:intron 40.0%
ACATCAAGTACAAATTCCGC+AGG + tig0004863:7108-7127 None:intergenic 40.0%
GATAGATGTCTCAGCATCAA+CGG + tig0004863:7248-7267 None:intergenic 40.0%
TGCTGAGAAGTCTATAGTAC+TGG - tig0004863:7408-7427 Msa1341790:intron 40.0%
CTGGAGATTATGTTTGGATG+AGG - tig0004863:7427-7446 Msa1341790:intron 40.0%
CATGCAAAATGCAAACTACC+AGG + tig0004863:7683-7702 None:intergenic 40.0%
AAGATCTGCCTACTTTCTAC+AGG - tig0004863:7760-7779 Msa1341790:intron 40.0%
CTACAGGCAATCAAAGCAAA+AGG - tig0004863:7776-7795 Msa1341790:intron 40.0%
CTTTCTTGAAGCTCCTGTTT+CGG - tig0004863:7805-7824 Msa1341790:intron 40.0%
TTTCTTGAAGCTCCTGTTTC+GGG - tig0004863:7806-7825 Msa1341790:intron 40.0%
! CAACTAGTTATACTTGCTGC+CGG - tig0004863:7854-7873 Msa1341790:intron 40.0%
GTTCCCAAAAGGAAATACAC+TGG - tig0004863:8074-8093 Msa1341790:intron 40.0%
! GACTCCAGTGTATTTCCTTT+TGG + tig0004863:8081-8100 None:intergenic 40.0%
GAGCTTTCTGATAGCTAATC+TGG + tig0004863:8212-8231 None:intergenic 40.0%
AGAAAAGGATGTTGAAGAGG+AGG - tig0004863:8326-8345 Msa1341790:intron 40.0%
TGAGAGAGAAATGGAACAAG+TGG - tig0004863:8521-8540 Msa1341790:intron 40.0%
TGAACATTGCCGTAATAGGT+TGG - tig0004863:8783-8802 Msa1341790:intron 40.0%
GACCTATTGCCAACCTATTA+CGG + tig0004863:8795-8814 None:intergenic 40.0%
CTGAGGACAATGATAAAAGC+TGG + tig0004863:9006-9025 None:intergenic 40.0%
! TCATTTTCAACGGACAACTG+AGG + tig0004863:9023-9042 None:intergenic 40.0%
!! GTGGTGGATTCGTTTGATAT+AGG - tig0004863:9087-9106 Msa1341790:intron 40.0%
TTTCCGAGTACATCAAATGC+TGG + tig0004863:9133-9152 None:intergenic 40.0%
GAAATCTTTCTTTCTGGGTG+AGG - tig0004863:9153-9172 Msa1341790:intron 40.0%
!! TTGTCAACATGGTAATGGGA+AGG - tig0004863:9203-9222 Msa1341790:intron 40.0%
ATGAACAGAAGGAGAAAACG+GGG + tig0004863:9239-9258 None:intergenic 40.0%
AGACTGTTTGAGAGAGCTTA+CGG + tig0004863:9544-9563 None:intergenic 40.0%
GCTGGTAAGTTACTGTGATA+AGG - tig0004863:9814-9833 Msa1341790:intron 40.0%
GGTAAGTTACTGTGATAAGG+AGG - tig0004863:9817-9836 Msa1341790:intron 40.0%
ATGTTTCAGTGGAAAAGCAG+GGG + tig0004863:9966-9985 None:intergenic 40.0%
GATGTTTCAGTGGAAAAGCA+GGG + tig0004863:9967-9986 None:intergenic 40.0%
TGATGTTTCAGTGGAAAAGC+AGG + tig0004863:9968-9987 None:intergenic 40.0%
! GTACAGCATTTTCATCTCCA+AGG + tig0004863:10018-10037 None:intergenic 40.0%
ATTCAAGAAAGCCAGAAGCA+TGG - tig0004863:10359-10378 Msa1341790:intron 40.0%
! TTCAAGAAAGCCAGAAGCAT+GGG - tig0004863:10360-10379 Msa1341790:intron 40.0%
TATTAGCTAGCGCATGGATT+CGG - tig0004863:10618-10637 Msa1341790:five_prime_UTR 40.0%
AGGAAAGGGTCTTTATCGAG+AGG - tig0004863:6623-6642 Msa1341790:three_prime_UTR 45.0%
ATGGCTTCAAGGTCACTGTT+TGG - tig0004863:6763-6782 Msa1341790:three_prime_UTR 45.0%
TTGGAACAGAACCCTCTCTA+AGG - tig0004863:6782-6801 Msa1341790:three_prime_UTR 45.0%
TGTGATGAACTCGTGGAACA+TGG - tig0004863:6987-7006 Msa1341790:intron 45.0%
CATTTCTTGACTACAGCTGC+AGG + tig0004863:7032-7051 None:intergenic 45.0%
TCAAGGCTGTAAGCATAACC+TGG - tig0004863:7662-7681 Msa1341790:intron 45.0%
CAGGCAATCAAAGCAAAAGG+TGG - tig0004863:7779-7798 Msa1341790:intron 45.0%
AGTAAGAAGCCTGCAGAAGA+TGG - tig0004863:7830-7849 Msa1341790:intron 45.0%
CGGCAGCAAGTATAACTAGT+TGG + tig0004863:7856-7875 None:intergenic 45.0%
! AAAAGTGCAGCATAGCAGGA+TGG + tig0004863:7935-7954 None:intergenic 45.0%
! ACACTCGTTTGAAAGGCATG+AGG + tig0004863:8015-8034 None:intergenic 45.0%
ATGTTGAAGAGGAGGAGTGA+GGG - tig0004863:8334-8353 Msa1341790:intron 45.0%
! TGCCGTAATAGGTTGGCAAT+AGG - tig0004863:8790-8809 Msa1341790:intron 45.0%
! TAGGTTGGCAATAGGTCCAT+TGG - tig0004863:8798-8817 Msa1341790:intron 45.0%
AGGTTGGCAATAGGTCCATT+GGG - tig0004863:8799-8818 Msa1341790:intron 45.0%
TCCATTGGGATTGCACAGAT+GGG - tig0004863:8813-8832 Msa1341790:intron 45.0%
GGACAATGATAAAAGCTGGG+AGG + tig0004863:9002-9021 None:intergenic 45.0%
CGTCCAGCATTTGATGTACT+CGG - tig0004863:9127-9146 Msa1341790:intron 45.0%
TCTTTCTTTCTGGGTGAGGT+TGG - tig0004863:9157-9176 Msa1341790:intron 45.0%
TTTCTGGGTGAGGTTGGAAA+TGG - tig0004863:9163-9182 Msa1341790:intron 45.0%
GACTGTTTGAGAGAGCTTAC+GGG + tig0004863:9543-9562 None:intergenic 45.0%
! CTGACACTTGCTGAAAGAAG+TGG - tig0004863:9764-9783 Msa1341790:intron 45.0%
! GCACATCAAGAAGTGTGCTA+GGG + tig0004863:9796-9815 None:intergenic 45.0%
! AGCACATCAAGAAGTGTGCT+AGG + tig0004863:9797-9816 None:intergenic 45.0%
TAGCACACTTCTTGATGTGC+TGG - tig0004863:9796-9815 Msa1341790:intron 45.0%
GATCTTGGGGCCATAAGTAA+CGG - tig0004863:9896-9915 Msa1341790:intron 45.0%
TCCACTGAAACATCAGCAGA+AGG - tig0004863:9973-9992 Msa1341790:intron 45.0%
TCCTTCTGCTGATGTTTCAG+TGG + tig0004863:9977-9996 None:intergenic 45.0%
! TCAAGAAAGCCAGAAGCATG+GGG - tig0004863:10361-10380 Msa1341790:intron 45.0%
CGTGCACAGCTGAAAAATCA+AGG + tig0004863:10395-10414 None:intergenic 45.0%
CCTTGAAGCCATGTCGTAGA+AGG + tig0004863:6755-6774 None:intergenic 50.0%
CCTTCTACGACATGGCTTCA+AGG - tig0004863:6752-6771 Msa1341790:three_prime_UTR 50.0%
GTGGAACATGGTGCTTCAGT+TGG - tig0004863:6999-7018 Msa1341790:intron 50.0%
ATCTGATCCTGCAGCTGCTT+TGG - tig0004863:7073-7092 Msa1341790:intron 50.0%
GGCTTCTTACTACCCGAAAC+AGG + tig0004863:7821-7840 None:intergenic 50.0%
ACTAGTTGGCCATCTTCTGC+AGG + tig0004863:7842-7861 None:intergenic 50.0%
! TATACTTGCTGCCGGAGACA+AGG - tig0004863:7862-7881 Msa1341790:intron 50.0%
! GGCTAAAAGTGCAGCATAGC+AGG + tig0004863:7939-7958 None:intergenic 50.0%
GATGTTGAAGAGGAGGAGTG+AGG - tig0004863:8333-8352 Msa1341790:intron 50.0%
GTCCATTGGGATTGCACAGA+TGG - tig0004863:8812-8831 Msa1341790:intron 50.0%
CCATTGGGATTGCACAGATG+GGG - tig0004863:8814-8833 Msa1341790:intron 50.0%
CATTGGGATTGCACAGATGG+GGG - tig0004863:8815-8834 Msa1341790:intron 50.0%
TCAGCAGAAGGACATGAGAC+TGG - tig0004863:9985-10004 Msa1341790:intron 50.0%
GGCAAAGAAATGTGACTGCG+AGG + tig0004863:10244-10263 None:intergenic 50.0%
! AAAGCCAGAAGCATGGGGTT+GGG - tig0004863:10366-10385 Msa1341790:intron 50.0%
! TGATCCTGCAGCTGCTTTGG+CGG - tig0004863:7076-7095 Msa1341790:intron 55.0%
CCCCATCTGTGCAATCCCAA+TGG + tig0004863:8817-8836 None:intergenic 55.0%
GATGGGGGTTGCCTCTCATT+AGG - tig0004863:8830-8849 Msa1341790:intron 55.0%
! ATGAGACTGGCTCTTGCCCT+TGG - tig0004863:9998-10017 Msa1341790:intron 55.0%
! TCATTTGCTGCAGCTGCGAC+AGG + tig0004863:10046-10065 None:intergenic 55.0%
TGTCGCAGCTGCAGCAAATG+AGG - tig0004863:10045-10064 Msa1341790:CDS 55.0%
! GAAAGCCAGAAGCATGGGGT+TGG - tig0004863:10365-10384 Msa1341790:intron 55.0%
CATGCGCTCTCACGCACACT+CGG + tig0004863:10086-10105 None:intergenic 60.0%
GTCTCCCAACCCCATGCTTC+TGG + tig0004863:10373-10392 None:intergenic 60.0%
GCGCACTCTCGTGTGTGCAT+TGG + tig0004863:10778-10797 None:intergenic 60.0%
CTGACCGCCAAAGCAGCTGC+AGG + tig0004863:7083-7102 None:intergenic 65.0%
GCTTTGGCGGTCAGTGCCTG+CGG - tig0004863:7089-7108 Msa1341790:intron 65.0%
GCTGCAGCTGCGACAGGCAT+TGG + tig0004863:10040-10059 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0004863 gene 6510 10801 6510 ID=Msa1341790;Name=Msa1341790
tig0004863 mRNA 6510 10801 6510 ID=Msa1341790-mRNA-1;Parent=Msa1341790;Name=Msa1341790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=189|1|1|1|1|1|8|373|284
tig0004863 exon 6510 6954 6510 ID=Msa1341790-mRNA-1:exon:3324;Parent=Msa1341790-mRNA-1
tig0004863 exon 7245 7415 7245 ID=Msa1341790-mRNA-1:exon:3323;Parent=Msa1341790-mRNA-1
tig0004863 exon 7494 7572 7494 ID=Msa1341790-mRNA-1:exon:3322;Parent=Msa1341790-mRNA-1
tig0004863 exon 8087 8202 8087 ID=Msa1341790-mRNA-1:exon:3321;Parent=Msa1341790-mRNA-1
tig0004863 exon 9428 9529 9428 ID=Msa1341790-mRNA-1:exon:3320;Parent=Msa1341790-mRNA-1
tig0004863 exon 10032 10130 10032 ID=Msa1341790-mRNA-1:exon:3319;Parent=Msa1341790-mRNA-1
tig0004863 exon 10214 10324 10214 ID=Msa1341790-mRNA-1:exon:3318;Parent=Msa1341790-mRNA-1
tig0004863 exon 10508 10801 10508 ID=Msa1341790-mRNA-1:exon:3317;Parent=Msa1341790-mRNA-1
tig0004863 five_prime_UTR 10613 10801 10613 ID=Msa1341790-mRNA-1:five_prime_utr;Parent=Msa1341790-mRNA-1
tig0004863 CDS 10508 10612 10508 ID=Msa1341790-mRNA-1:cds;Parent=Msa1341790-mRNA-1
tig0004863 CDS 10214 10324 10214 ID=Msa1341790-mRNA-1:cds;Parent=Msa1341790-mRNA-1
tig0004863 CDS 10032 10130 10032 ID=Msa1341790-mRNA-1:cds;Parent=Msa1341790-mRNA-1
tig0004863 CDS 9428 9529 9428 ID=Msa1341790-mRNA-1:cds;Parent=Msa1341790-mRNA-1
tig0004863 CDS 8087 8202 8087 ID=Msa1341790-mRNA-1:cds;Parent=Msa1341790-mRNA-1
tig0004863 CDS 7494 7572 7494 ID=Msa1341790-mRNA-1:cds;Parent=Msa1341790-mRNA-1
tig0004863 CDS 7245 7415 7245 ID=Msa1341790-mRNA-1:cds;Parent=Msa1341790-mRNA-1
tig0004863 CDS 6883 6954 6883 ID=Msa1341790-mRNA-1:cds;Parent=Msa1341790-mRNA-1
tig0004863 three_prime_UTR 6510 6882 6510 ID=Msa1341790-mRNA-1:three_prime_utr;Parent=Msa1341790-mRNA-1
Gene Sequence

>Msa1341790

ATGGAGATTGGATTTTTAGGTTTGGGGATAATGGGCAAAGCCATGTCAATTAACCTTCTACGACATGGCTTCAAGGTCACTGTTTGGAACAGAACCCTCTCTAAGTGTGATGAACTCGTGGAACATGGTGCTTCAGTTGGAGAAACACCTGCAGCTGTAGTCAAGAAATGCAAATATACAATTGCAATGTTATCTGATCCTGCAGCTGCTTTGGCGGTTGTGTTTGATAAAGATGGTGTTCTTGAGCAAATTAATGGAAAAGGTTATATTGACATGTCAACCGTTGATGCTGAGACATCTATCAAGATATCTGAGGCAATCAAAGCAAAAGGTGGTGACTTTCTTGAAGCTCCTGTTTCGGGTAGTAAGAAGCCTGCAGAAGATGGCCAACTAGTTATACTTGCTGCCGGAGACAAGGCATTCTATGATGAAGCACGTCCAGCATTTGATGTACTCGGAAAGAAATCTTTCTTTCTGGGTGAGGTTGGAAATGGAGCAAAAATGAAACTTGTTGTCAACATGGTAATGGGAAGTATGATGAATGCTTTCTCTGAGGGACTGACACTTGCTGAAAGAAGTGGCTTGAACCCTAGCACACTTCTTGATGTGCTGGATCTTGGGGCCATAAGTAACGGCATGTTTAAATTGAAAGGACCAACAATGCTTAAAAACAGTTACGCCCCTGCTTTTCCACTGAAACATCAGCAGAAGGACATGAGACTGGCTCTTGCCCTTGGAGATGAAAATGCTGTACCAATGCCTGTCGCAGCTGCAGCAAATGAGGCATTCAAGAAAGCCAGAAGCATGGGGTTGGGAGACCTTGATTTTTCAGCTGTGCACGAGACTTTGAAATAA

Protein sequence

>Msa1341790

MEIGFLGLGIMGKAMSINLLRHGFKVTVWNRTLSKCDELVEHGASVGETPAAVVKKCKYTIAMLSDPAAALAVVFDKDGVLEQINGKGYIDMSTVDAETSIKISEAIKAKGGDFLEAPVSGSKKPAEDGQLVILAAGDKAFYDEARPAFDVLGKKSFFLGEVGNGAKMKLVVNMVMGSMMNAFSEGLTLAERSGLNPSTLLDVLDLGAISNGMFKLKGPTMLKNSYAPAFPLKHQQKDMRLALALGDENAVPMPVAAAANEAFKKARSMGLGDLDFSAVHETLK*