AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0582110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582110 MtrunA17_Chr4g0017231 91.234 308 2 4 1 285 1 306 0.0 549
Msa0582110 MtrunA17_Chr2g0305051 47.773 247 124 2 29 272 34 278 9.72e-69 223
Msa0582110 MtrunA17_Chr4g0057771 37.173 191 109 4 90 270 53 242 5.84e-36 129
Msa0582110 MtrunA17_Chr1g0181801 29.885 174 101 4 91 246 136 306 8.69e-17 79.3
Msa0582110 MtrunA17_Chr7g0263541 29.310 174 102 4 91 246 61 231 5.67e-16 75.9
Msa0582110 MtrunA17_Chr8g0337051 34.906 106 60 3 89 190 44 144 2.20e-15 73.2
Msa0582110 MtrunA17_Chr4g0018221 25.698 179 103 4 90 265 78 229 4.99e-12 64.3
Msa0582110 MtrunA17_Chr5g0428971 25.140 179 104 4 90 265 55 206 7.06e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582110 AT5G47840.1 76.020 196 47 0 90 285 88 283 9.46e-109 317
Msa0582110 AT5G47840.2 70.408 196 44 1 90 285 88 269 7.34e-98 288
Msa0582110 AT5G35170.1 56.150 187 82 0 90 276 103 289 5.24e-70 227
Msa0582110 AT5G35170.2 56.150 187 82 0 90 276 103 289 5.85e-70 226
Msa0582110 AT5G63400.1 34.896 192 114 4 89 270 56 246 3.42e-33 122
Msa0582110 AT5G50370.1 33.333 165 101 3 89 245 57 220 2.12e-29 112
Msa0582110 AT5G50370.2 33.750 160 97 3 90 241 58 216 4.60e-28 108
Msa0582110 AT5G63400.2 38.235 136 79 2 89 220 56 190 1.21e-27 106
Msa0582110 AT2G37250.1 28.251 223 138 5 42 246 28 246 6.51e-19 84.7
Msa0582110 AT2G39270.1 31.395 172 101 3 91 246 89 259 1.10e-17 81.6
Msa0582110 AT5G26667.1 35.849 106 59 3 89 190 37 137 6.59e-16 75.1
Msa0582110 AT5G26667.3 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0582110 AT5G26667.2 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0582110 AT5G26667.4 35.849 106 59 3 89 190 37 137 6.73e-16 75.1
Msa0582110 AT3G60180.1 25.806 217 121 5 52 265 17 196 2.16e-13 68.2
Msa0582110 AT3G60180.2 25.806 217 121 5 52 265 17 196 2.16e-13 68.2
Msa0582110 AT4G25280.1 31.304 115 76 2 90 203 77 189 7.74e-13 67.4
Msa0582110 AT4G25280.2 31.304 115 76 2 90 203 77 189 7.74e-13 67.4

Find 79 sgRNAs with CRISPR-Local

Find 394 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGGTTCCTCCCTGTTAC+TGG 0.196331 4_2:-33106 Msa0582110:three_prime_UTR
TTATGATTATGATTATTATT+TGG 0.225692 4_2:+38190 None:intergenic
CAATAATGATATACAGAAAA+TGG 0.248233 4_2:+33060 None:intergenic
GCTACTGCACTTAAGGAGTT+AGG 0.300266 4_2:-36227 Msa0582110:CDS
AAAGGATATATAATATAATA+TGG 0.304977 4_2:-38349 None:intergenic
ATTGAAACCGGAAGTGAAAA+TGG 0.306531 4_2:-36477 Msa0582110:CDS
TGTAGAGAATGGTTGGCTTT+TGG 0.314777 4_2:-36276 Msa0582110:CDS
GAAAGCTTCTTCAGAATCTA+TGG 0.334801 4_2:-33358 Msa0582110:CDS
CGAGTCATAGTTTGTTGGTT+TGG 0.336884 4_2:-33123 Msa0582110:three_prime_UTR
CCAAAGGAAATAAAAGAATA+AGG 0.336928 4_2:-33017 Msa0582110:three_prime_UTR
GTATAAAGATATAACAATTA+AGG 0.337775 4_2:-34807 Msa0582110:intron
GCATATGAACCACCAGTAAC+AGG 0.349980 4_2:+33094 None:intergenic
TTATGATTATTATTTGGAAT+TGG 0.350423 4_2:+38196 None:intergenic
ATTCTTGTGGAGAGAGTAGT+TGG 0.351960 4_2:-35162 Msa0582110:CDS
TGATATATCTTCCCAGTAAC+AGG 0.355623 4_2:+35126 None:intergenic
AGGAGATTAGATCCTGTTAC+TGG 0.364620 4_2:-35138 Msa0582110:CDS
TCTAGAAGAATGAAAATATC+AGG 0.368176 4_2:+36197 None:intergenic
GAAGTATTTGCTCAAATTGA+TGG 0.377927 4_2:-33408 Msa0582110:CDS
ATCACAGGCTACTGCACTTA+AGG 0.378525 4_2:-36234 Msa0582110:CDS
TTCTTCATCATCTTCTTTGA+AGG 0.383124 4_2:-38230 Msa0582110:CDS
CAACCATTCTCTACAGAATC+TGG 0.393081 4_2:+36284 None:intergenic
AAAGCGTGCGAAAGAATATA+TGG 0.409628 4_2:-36454 Msa0582110:CDS
TTGCTGCTGGAGATTTACTT+AGG 0.410112 4_2:-36506 Msa0582110:CDS
TTGATAGTACAAAGTTGTAT+TGG 0.411071 4_2:-33198 Msa0582110:three_prime_UTR
CTACTGCACTTAAGGAGTTA+GGG 0.424190 4_2:-36226 Msa0582110:CDS
ACCATGACAACTATTTCATC+AGG 0.443004 4_2:+36414 None:intergenic
TACCATAGAAGAATGAGAAA+AGG 0.443165 4_2:+38057 None:intergenic
TGCATATATGCAGTACGGTT+TGG 0.445973 4_2:-36535 Msa0582110:intron
GGTTTGGTGCATGTTGCTGC+TGG 0.446456 4_2:-36519 Msa0582110:CDS
GAATCAACAAAATTAATAAG+AGG 0.456579 4_2:-38317 Msa0582110:five_prime_UTR
TTGTGGAGAGAGTAGTTGGA+AGG 0.459886 4_2:-35158 Msa0582110:CDS
TTCAGTATCATCAAAACGTT+GGG 0.461597 4_2:+35056 None:intergenic
AATTGTTATATCTTTATACA+TGG 0.470672 4_2:+34811 None:intergenic
TGCTGCTGGAGATTTACTTA+GGG 0.479317 4_2:-36505 Msa0582110:CDS
CTTAGGGCGGAAATTGAAAC+CGG 0.486128 4_2:-36489 Msa0582110:CDS
AGTAGCCTGTGATAAGCTCC+TGG 0.491046 4_2:+36244 None:intergenic
AAGCCAGATTCTGTAGAGAA+TGG 0.494738 4_2:-36287 Msa0582110:CDS
ACCATAGAAGAATGAGAAAA+GGG 0.498183 4_2:+38058 None:intergenic
TTATATCTTTATACATGGAA+AGG 0.508644 4_2:+34816 None:intergenic
TCTTCATCATCTTCTTTGAA+GGG 0.513126 4_2:-38229 Msa0582110:CDS
TGTGAAAGCGGTGGCGAAGA+CGG 0.516859 4_2:-37959 Msa0582110:CDS
CAGATTCTGTAGAGAATGGT+TGG 0.520796 4_2:-36283 Msa0582110:CDS
CTTCAGTATCATCAAAACGT+TGG 0.527352 4_2:+35055 None:intergenic
CAAAGAAGATGATGAAGAAG+TGG 0.539826 4_2:+38234 None:intergenic
TGGTTCCTCCCTGTTACTGG+TGG 0.548985 4_2:-33103 Msa0582110:three_prime_UTR
TAATGGAAATTCCTCTCAGA+AGG 0.552468 4_2:-33430 Msa0582110:CDS
AGCGGTGGCGAAGACGGAGG+AGG 0.552869 4_2:-37953 Msa0582110:CDS
TGTAGCGAGTCATAGTTTGT+TGG 0.554883 4_2:-33128 Msa0582110:three_prime_UTR
AATCAACAAAATTAATAAGA+GGG 0.556950 4_2:-38316 Msa0582110:five_prime_UTR
AATTCGTAAAATAAACTATG+AGG 0.558111 4_2:+33174 None:intergenic
TGCGAAAGAATATATGGAGA+AGG 0.559519 4_2:-36448 Msa0582110:CDS
TCATTTGAGTGTGAAAATGA+AGG 0.563211 4_2:-33152 Msa0582110:three_prime_UTR
TTATGTATTCGATTTGCCAA+AGG 0.568312 4_2:-33033 Msa0582110:three_prime_UTR
TGCTGGAGATTTACTTAGGG+CGG 0.569705 4_2:-36502 Msa0582110:CDS
TTACAACTCTTCTAGAGCAA+AGG 0.576098 4_2:-33380 Msa0582110:CDS
AGCAAATACTTCCTTCTGAG+AGG 0.577991 4_2:+33419 None:intergenic
TATGATTCAGATTGTGAAAG+CGG 0.579020 4_2:-37971 Msa0582110:intron
ATTATAGTTTACCTTCAGCA+AGG 0.583358 4_2:+33271 None:intergenic
ATATATGGAGAAGGGACAGT+TGG 0.586158 4_2:-36439 Msa0582110:CDS
CCGGAAATCATAACATGAAG+TGG 0.589982 4_2:+37928 None:intergenic
ATATCCCAGGAGCTTATCAC+AGG 0.594589 4_2:-36249 Msa0582110:CDS
AGACAAAAGAAATCGCGGAT+AGG 0.596089 4_2:-35083 Msa0582110:CDS
CCCTGATGAAATAGTTGTCA+TGG 0.597046 4_2:-36415 Msa0582110:intron
ATACAGAAAATGGTAAAGAA+CGG 0.604015 4_2:+33070 None:intergenic
GGAGATTAGATCCTGTTACT+GGG 0.607211 4_2:-35137 Msa0582110:CDS
GCGAAAGAATATATGGAGAA+GGG 0.615803 4_2:-36447 Msa0582110:CDS
CATATGAACCACCAGTAACA+GGG 0.623448 4_2:+33095 None:intergenic
TTAACATGGTGCCTTGCTGA+AGG 0.631362 4_2:-33282 Msa0582110:three_prime_UTR
TCCAGAGACAAAAGAAATCG+CGG 0.637052 4_2:-35088 Msa0582110:CDS
GTAGCCTGTGATAAGCTCCT+GGG 0.640337 4_2:+36245 None:intergenic
CACCCATCATCAAAATGTGG+AGG 0.641846 4_2:-34843 Msa0582110:CDS
GATTCAGATTGTGAAAGCGG+TGG 0.642056 4_2:-37968 Msa0582110:intron
GGTGTCTGAAGATATTCTTG+TGG 0.642880 4_2:-35175 Msa0582110:CDS
ATGAGAAAAGGGTCGCGAAG+AGG 0.645968 4_2:+38069 None:intergenic
CCATGACAACTATTTCATCA+GGG 0.657389 4_2:+36415 None:intergenic
GAACACCCATCATCAAAATG+TGG 0.675841 4_2:-34846 Msa0582110:CDS
GAAAGCGGTGGCGAAGACGG+AGG 0.684721 4_2:-37956 Msa0582110:CDS
CGCGAAGAGGATGAACGAAG+AGG 0.691693 4_2:+38082 None:intergenic
ATGAACCACCAGTAACAGGG+AGG 0.771471 4_2:+33098 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTAATTTTATTTAT+TGG - chr4_2:33309-33328 Msa0582110:three_prime_UTR 0.0%
!! TTATGATTATGATTATTATT+TGG + chr4_2:33148-33167 None:intergenic 10.0%
!! TATTACATATATAGTTTAAA+GGG + chr4_2:35985-36004 None:intergenic 10.0%
!! AATCAACAAAATTAATAAGA+GGG - chr4_2:33019-33038 Msa0582110:three_prime_UTR 15.0%
!!! TTATGATTATTATTTGGAAT+TGG + chr4_2:33142-33161 None:intergenic 15.0%
!! AAAAAAAAAACTTACTTTCT+TGG + chr4_2:33474-33493 None:intergenic 15.0%
!! TTAAAAATAGTAGAAAAGTT+AGG + chr4_2:33641-33660 None:intergenic 15.0%
!!! AGGAAAGAAATTTTAATTAA+GGG + chr4_2:34372-34391 None:intergenic 15.0%
!! AATAATATAGTAAGGAATTT+GGG + chr4_2:34695-34714 None:intergenic 15.0%
!! AAATAATATAGTAAGGAATT+TGG + chr4_2:34696-34715 None:intergenic 15.0%
!!! GAATCAATTTTTTATTTCAA+TGG + chr4_2:34777-34796 None:intergenic 15.0%
!! ATATTTGAATATCAATTGTA+CGG + chr4_2:34969-34988 None:intergenic 15.0%
!!! TAACTCTTTTATTTAATAGA+TGG - chr4_2:35008-35027 Msa0582110:intron 15.0%
!!! ATAATGAAATATCGATATTT+TGG + chr4_2:35328-35347 None:intergenic 15.0%
!! AAAATATCGATATTTCATTA+TGG - chr4_2:35327-35346 Msa0582110:intron 15.0%
!! TATTCTTATTGAATAATATC+TGG - chr4_2:35432-35451 Msa0582110:intron 15.0%
!! TTAAAATAAAATTAAAGGTG+TGG - chr4_2:35897-35916 Msa0582110:intron 15.0%
!!! TAAAATAAAATTAAAGGTGT+GGG - chr4_2:35898-35917 Msa0582110:intron 15.0%
!! GTATTACATATATAGTTTAA+AGG + chr4_2:35986-36005 None:intergenic 15.0%
!! AATTGTTATATCTTTATACA+TGG + chr4_2:36527-36546 None:intergenic 15.0%
!! GTATAAAGATATAACAATTA+AGG - chr4_2:36528-36547 Msa0582110:intron 15.0%
!! TGAAGTGTATATTAAATAAT+TGG - chr4_2:36684-36703 Msa0582110:intron 15.0%
!!! TTTTTTTTAAAAGGAAGAAA+AGG + chr4_2:37237-37256 None:intergenic 15.0%
!! AATAATCAATTTCTATTTAG+TGG + chr4_2:37611-37630 None:intergenic 15.0%
!! GAATCAACAAAATTAATAAG+AGG - chr4_2:33018-33037 Msa0582110:three_prime_UTR 20.0%
!!! GAGGAAAGAAATTTTAATTA+AGG + chr4_2:34373-34392 None:intergenic 20.0%
!!! TCCTTACTATATTATTTTCT+TGG - chr4_2:34699-34718 Msa0582110:intron 20.0%
!!! TATATTATTTTCTTGGCTTT+GGG - chr4_2:34706-34725 Msa0582110:intron 20.0%
!! ACTAAATACAATTACATGTA+TGG - chr4_2:35475-35494 Msa0582110:intron 20.0%
!! GTTATGTTAAGGAATATATA+GGG + chr4_2:35653-35672 None:intergenic 20.0%
!! TGTTATGTTAAGGAATATAT+AGG + chr4_2:35654-35673 None:intergenic 20.0%
!! TTGTTAGAAAACAATATAAG+AGG + chr4_2:35755-35774 None:intergenic 20.0%
!!! TTATATTGTTTTCTAACAAG+AGG - chr4_2:35756-35775 Msa0582110:intron 20.0%
!!! AATTTACAGTTCAAATTTTC+AGG - chr4_2:36139-36158 Msa0582110:intron 20.0%
!! ATAGATTAGAGTTTCTAATA+GGG + chr4_2:36317-36336 None:intergenic 20.0%
!! TATAGATTAGAGTTTCTAAT+AGG + chr4_2:36318-36337 None:intergenic 20.0%
!!! TTATTGTTTGTTTTCAACTT+AGG - chr4_2:36453-36472 Msa0582110:CDS 20.0%
!! TTATATCTTTATACATGGAA+AGG + chr4_2:36522-36541 None:intergenic 20.0%
!! ACATATTAAATATTAGCAGT+TGG - chr4_2:37157-37176 Msa0582110:intron 20.0%
!!! CTGTGATGATTTTTTTTAAA+AGG + chr4_2:37246-37265 None:intergenic 20.0%
!! GCATATTCTTATAATGTTAT+AGG + chr4_2:37376-37395 None:intergenic 20.0%
!! TAGAAATTGATTATTTCACA+AGG - chr4_2:37616-37635 Msa0582110:intron 20.0%
!! AATTCGTAAAATAAACTATG+AGG + chr4_2:38164-38183 None:intergenic 20.0%
!! CAATAATGATATACAGAAAA+TGG + chr4_2:38278-38297 None:intergenic 20.0%
!!! CATTTTCTGTATATCATTAT+TGG - chr4_2:38276-38295 Msa0582110:exon 20.0%
! AGCATTTATCTATCTTAAAC+CGG + chr4_2:33887-33906 None:intergenic 25.0%
!!! TTACCCTGTTTTTTAACAAT+AGG - chr4_2:34029-34048 Msa0582110:intron 25.0%
! AAGCCTATTGTTAAAAAACA+GGG + chr4_2:34035-34054 None:intergenic 25.0%
! AAAGCCTATTGTTAAAAAAC+AGG + chr4_2:34036-34055 None:intergenic 25.0%
!!! AGATAATCATTTTGATCCAT+CGG - chr4_2:34071-34090 Msa0582110:intron 25.0%
! ATATAATGCGATATTCCATT+TGG + chr4_2:34440-34459 None:intergenic 25.0%
! GCCAAGAAAATAATATAGTA+AGG + chr4_2:34703-34722 None:intergenic 25.0%
!! CTATATTATTTTCTTGGCTT+TGG - chr4_2:34705-34724 Msa0582110:intron 25.0%
! TCTAGAAGAATGAAAATATC+AGG + chr4_2:35141-35160 None:intergenic 25.0%
!! TGATATTTTCATTCTTCTAG+AGG - chr4_2:35140-35159 Msa0582110:CDS 25.0%
! GTTATGACTATGATATAAAC+TGG - chr4_2:35378-35397 Msa0582110:intron 25.0%
! ATTGAATAATATCTGGAGAA+AGG - chr4_2:35439-35458 Msa0582110:intron 25.0%
! GTGGACAAAAATATTTATAG+CGG + chr4_2:35731-35750 None:intergenic 25.0%
!!! TTAAAATTGTTTCTACGAAG+TGG + chr4_2:35881-35900 None:intergenic 25.0%
! GTTGTTCATATAATTGATCA+AGG + chr4_2:36008-36027 None:intergenic 25.0%
!! TATTTCTGTAGTAAGACTAA+TGG + chr4_2:36088-36107 None:intergenic 25.0%
! AGTCTTACTACAGAAATAAA+AGG - chr4_2:36090-36109 Msa0582110:intron 25.0%
! GTCTTACTACAGAAATAAAA+GGG - chr4_2:36091-36110 Msa0582110:intron 25.0%
!! TGCATTTTCTGATAAAAGAA+TGG + chr4_2:36357-36376 None:intergenic 25.0%
! ATTTCTCAAATCTGTAGTAA+TGG + chr4_2:36662-36681 None:intergenic 25.0%
! ACAATAATGTGACATTTAGT+GGG + chr4_2:36711-36730 None:intergenic 25.0%
! TACAATAATGTGACATTTAG+TGG + chr4_2:36712-36731 None:intergenic 25.0%
! TATTTATGTTCCCAAAACTT+TGG - chr4_2:36737-36756 Msa0582110:intron 25.0%
!! TTTTCCATTACCAAAGTTTT+GGG + chr4_2:36750-36769 None:intergenic 25.0%
!! ATTTTCCATTACCAAAGTTT+TGG + chr4_2:36751-36770 None:intergenic 25.0%
!!! AACTTTGGTAATGGAAAATA+TGG - chr4_2:36752-36771 Msa0582110:intron 25.0%
! CAGTTCTTCATATCATTATA+AGG - chr4_2:37395-37414 Msa0582110:intron 25.0%
! CTTCATATCATTATAAGGTT+CGG - chr4_2:37400-37419 Msa0582110:intron 25.0%
! TTCATATCATTATAAGGTTC+GGG - chr4_2:37401-37420 Msa0582110:intron 25.0%
! TTATCAGAAAAAACCCTTTA+TGG + chr4_2:37645-37664 None:intergenic 25.0%
!!! TAAAGGGTTTTTTCTGATAA+TGG - chr4_2:37645-37664 Msa0582110:intron 25.0%
! AATGGTGATAGTAATAACTA+TGG - chr4_2:37663-37682 Msa0582110:intron 25.0%
! ATGGTGATAGTAATAACTAT+GGG - chr4_2:37664-37683 Msa0582110:intron 25.0%
! ATTATATGTTTACTGTGTCT+TGG + chr4_2:37838-37857 None:intergenic 25.0%
!!! TTTTGTTGTCTACAGATTAA+TGG - chr4_2:37888-37907 Msa0582110:intron 25.0%
!! TTGATAGTACAAAGTTGTAT+TGG - chr4_2:38137-38156 Msa0582110:CDS 25.0%
! ATACAGAAAATGGTAAAGAA+CGG + chr4_2:38268-38287 None:intergenic 25.0%
!!! CCTTATTCTTTTATTTCCTT+TGG + chr4_2:38321-38340 None:intergenic 25.0%
! CCAAAGGAAATAAAAGAATA+AGG - chr4_2:38318-38337 Msa0582110:five_prime_UTR 25.0%
AAGAGTAAGTGACGAAAAAA+TGG - chr4_2:33054-33073 Msa0582110:three_prime_UTR 30.0%
AGAGTAAGTGACGAAAAAAT+GGG - chr4_2:33055-33074 Msa0582110:three_prime_UTR 30.0%
TTCTTCATCATCTTCTTTGA+AGG - chr4_2:33105-33124 Msa0582110:three_prime_UTR 30.0%
TCTTCATCATCTTCTTTGAA+GGG - chr4_2:33106-33125 Msa0582110:three_prime_UTR 30.0%
ACCATAGAAGAATGAGAAAA+GGG + chr4_2:33280-33299 None:intergenic 30.0%
TACCATAGAAGAATGAGAAA+AGG + chr4_2:33281-33300 None:intergenic 30.0%
TATGATTCAGATTGTGAAAG+CGG - chr4_2:33364-33383 Msa0582110:CDS 30.0%
ATTAGCAGCATTAGCATAAT+AGG - chr4_2:33773-33792 Msa0582110:intron 30.0%
TCTTAAACCGGAAAATACTT+GGG + chr4_2:33875-33894 None:intergenic 30.0%
ATCTTAAACCGGAAAATACT+TGG + chr4_2:33876-33895 None:intergenic 30.0%
!! TTTAACAATAGGCTTTTTCC+AGG - chr4_2:34040-34059 Msa0582110:intron 30.0%
!! TTAACAATAGGCTTTTTCCA+GGG - chr4_2:34041-34060 Msa0582110:intron 30.0%
ATGATTATCTCAAATAACCC+TGG + chr4_2:34061-34080 None:intergenic 30.0%
!! GATAATCATTTTGATCCATC+GGG - chr4_2:34072-34091 Msa0582110:intron 30.0%
TCTTCATGTATAGTTCACAA+GGG + chr4_2:34395-34414 None:intergenic 30.0%
TGGAGTTTAGACATAAACTT+TGG - chr4_2:34607-34626 Msa0582110:intron 30.0%
!! ATCTTTTGTAGCCTTACAAA+GGG - chr4_2:34660-34679 Msa0582110:intron 30.0%
TAGTAAGGAATTTGGGAATT+TGG + chr4_2:34688-34707 None:intergenic 30.0%
!! TACTGATTCACTACTAGATA+AGG - chr4_2:34735-34754 Msa0582110:intron 30.0%
ATGAAATAGTTGTCATGGTA+TGG - chr4_2:34925-34944 Msa0582110:intron 30.0%
GATAAATTACAATGAAGCTG+AGG + chr4_2:35211-35230 None:intergenic 30.0%
TATTCCTAACTCTTACAGTT+TGG + chr4_2:35406-35425 None:intergenic 30.0%
AATACAGAGAATTCTGTACA+AGG - chr4_2:35511-35530 Msa0582110:intron 30.0%
CAAAAATATTTATAGCGGTC+AGG + chr4_2:35726-35745 None:intergenic 30.0%
AGAAAACAATATAAGAGGAG+TGG + chr4_2:35750-35769 None:intergenic 30.0%
TTCAGTATCATCAAAACGTT+GGG + chr4_2:36282-36301 None:intergenic 30.0%
!! TTTTGATGATACTGAAGAGA+AGG - chr4_2:36286-36305 Msa0582110:CDS 30.0%
TTTGCATATATGTAATCCCA+TGG + chr4_2:36399-36418 None:intergenic 30.0%
! AATATGGAGAGCGTAAAAAA+TGG - chr4_2:36768-36787 Msa0582110:intron 30.0%
!! GTAATCTTGTTTGTTGTTTG+TGG - chr4_2:36875-36894 Msa0582110:intron 30.0%
!! GCATTCATATCTTGTTGTTA+TGG - chr4_2:37018-37037 Msa0582110:intron 30.0%
ATCTCATCAGAACAAGTATT+TGG + chr4_2:37185-37204 None:intergenic 30.0%
GCAAATTCTTTCTTCATTAC+AGG + chr4_2:37509-37528 None:intergenic 30.0%
AAAATGTGACACTAAGAAAG+TGG - chr4_2:37542-37561 Msa0582110:intron 30.0%
TAATAAATCCATGTGACAAG+CGG + chr4_2:37588-37607 None:intergenic 30.0%
AATAACTATGGGAAGAAGAA+AGG - chr4_2:37675-37694 Msa0582110:intron 30.0%
AAGTCATACGATGTCAATTT+CGG - chr4_2:37708-37727 Msa0582110:intron 30.0%
! GAAGTATTTGCTCAAATTGA+TGG - chr4_2:37927-37946 Msa0582110:intron 30.0%
!!! TTTGTCGTTTTGATTTAGCA+TGG - chr4_2:38018-38037 Msa0582110:intron 30.0%
!!! GGTGTCTTTTTGATTTAACA+TGG - chr4_2:38039-38058 Msa0582110:intron 30.0%
ATTATAGTTTACCTTCAGCA+AGG + chr4_2:38067-38086 None:intergenic 30.0%
TCATTTGAGTGTGAAAATGA+AGG - chr4_2:38183-38202 Msa0582110:CDS 30.0%
! TTATGTATTCGATTTGCCAA+AGG - chr4_2:38302-38321 Msa0582110:five_prime_UTR 30.0%
CAAAGAAGATGATGAAGAAG+TGG + chr4_2:33104-33123 None:intergenic 35.0%
! ACCCTTTTCTCATTCTTCTA+TGG - chr4_2:33276-33295 Msa0582110:three_prime_UTR 35.0%
CCACTTCATGTTATGATTTC+CGG - chr4_2:33407-33426 Msa0582110:CDS 35.0%
!! AACTTACTTTCTTGGTGATG+AGG + chr4_2:33466-33485 None:intergenic 35.0%
AAAAGTTAGGTCATGAAGCA+CGG + chr4_2:33628-33647 None:intergenic 35.0%
ACTAGACTAGAGTAAGCATA+GGG + chr4_2:33840-33859 None:intergenic 35.0%
! TTGTTGTCATTTATCGACCA+TGG + chr4_2:33933-33952 None:intergenic 35.0%
TGGTCGATAAATGACAACAA+TGG - chr4_2:33933-33952 Msa0582110:intron 35.0%
GGTCGATAAATGACAACAAT+GGG - chr4_2:33934-33953 Msa0582110:intron 35.0%
! ACTCTTTTCTAACTCAACTC+TGG - chr4_2:34214-34233 Msa0582110:intron 35.0%
GTCTTCATGTATAGTTCACA+AGG + chr4_2:34396-34415 None:intergenic 35.0%
TTATATTCCTTTCCTCTCCT+CGG - chr4_2:34454-34473 Msa0582110:intron 35.0%
GTTGAACCAAATTTACCTAG+AGG - chr4_2:34476-34495 Msa0582110:intron 35.0%
AAGCATCCTCTAGGTAAATT+TGG + chr4_2:34485-34504 None:intergenic 35.0%
AAATTTACCTAGAGGATGCT+TGG - chr4_2:34484-34503 Msa0582110:intron 35.0%
AATTTACCTAGAGGATGCTT+GGG - chr4_2:34485-34504 Msa0582110:intron 35.0%
TTAGACATAAACTTTGGACC+TGG - chr4_2:34613-34632 Msa0582110:intron 35.0%
TAAGGCTACAAAAGATGCAA+TGG + chr4_2:34656-34675 None:intergenic 35.0%
!! CATCTTTTGTAGCCTTACAA+AGG - chr4_2:34659-34678 Msa0582110:intron 35.0%
TCAAGTGCATATATGCAGTA+CGG - chr4_2:34795-34814 Msa0582110:intron 35.0%
ATTGAAACCGGAAGTGAAAA+TGG - chr4_2:34858-34877 Msa0582110:CDS 35.0%
AAAGCGTGCGAAAGAATATA+TGG - chr4_2:34881-34900 Msa0582110:intron 35.0%
TGCGAAAGAATATATGGAGA+AGG - chr4_2:34887-34906 Msa0582110:intron 35.0%
GCGAAAGAATATATGGAGAA+GGG - chr4_2:34888-34907 Msa0582110:intron 35.0%
CCATGACAACTATTTCATCA+GGG + chr4_2:34923-34942 None:intergenic 35.0%
ACCATGACAACTATTTCATC+AGG + chr4_2:34924-34943 None:intergenic 35.0%
AATAGTTGTCATGGTATGGT+AGG - chr4_2:34929-34948 Msa0582110:intron 35.0%
ATAGTTGTCATGGTATGGTA+GGG - chr4_2:34930-34949 Msa0582110:intron 35.0%
GAATTCTGTACAAGGTGATA+CGG - chr4_2:35519-35538 Msa0582110:intron 35.0%
AATTCTGTACAAGGTGATAC+GGG - chr4_2:35520-35539 Msa0582110:intron 35.0%
!! TTACGGAAGGGAAGTATTTA+GGG + chr4_2:35589-35608 None:intergenic 35.0%
GAATATATAGGGAAAGACAG+GGG + chr4_2:35642-35661 None:intergenic 35.0%
GGAATATATAGGGAAAGACA+GGG + chr4_2:35643-35662 None:intergenic 35.0%
AGGAATATATAGGGAAAGAC+AGG + chr4_2:35644-35663 None:intergenic 35.0%
AGTTACAGCGTGTTATGTTA+AGG + chr4_2:35664-35683 None:intergenic 35.0%
TGATATATCTTCCCAGTAAC+AGG + chr4_2:36212-36231 None:intergenic 35.0%
CTTCAGTATCATCAAAACGT+TGG + chr4_2:36283-36302 None:intergenic 35.0%
! CAAATCTGTAGTAATGGAGA+GGG + chr4_2:36656-36675 None:intergenic 35.0%
! TCAAATCTGTAGTAATGGAG+AGG + chr4_2:36657-36676 None:intergenic 35.0%
TGTTCCCAAAACTTTGGTAA+TGG - chr4_2:36743-36762 Msa0582110:intron 35.0%
TACTGATAGACATGGTTGAT+TGG + chr4_2:36926-36945 None:intergenic 35.0%
GCATACAATACTGATAGACA+TGG + chr4_2:36934-36953 None:intergenic 35.0%
AGTATTGTATGCTACCAATG+TGG - chr4_2:36942-36961 Msa0582110:intron 35.0%
TGTTATGGATAAGATGCCAA+CGG - chr4_2:37033-37052 Msa0582110:intron 35.0%
TCATAGTGTAAGCAAAACGA+GGG - chr4_2:37076-37095 Msa0582110:intron 35.0%
!! GAGAAGTGTCTTATTGTGAT+AGG - chr4_2:37132-37151 Msa0582110:intron 35.0%
GTGTGAGGAAAAATGATTGA+GGG - chr4_2:37295-37314 Msa0582110:intron 35.0%
AGGAAAAATGATTGAGGGAT+GGG - chr4_2:37300-37319 Msa0582110:intron 35.0%
TGATAAATAGGCTGAAACAC+TGG - chr4_2:37323-37342 Msa0582110:intron 35.0%
TCAGAAAAAACCCTTTATGG+TGG + chr4_2:37642-37661 None:intergenic 35.0%
AGTCATACGATGTCAATTTC+GGG - chr4_2:37709-37728 Msa0582110:intron 35.0%
TAATGGAAATTCCTCTCAGA+AGG - chr4_2:37905-37924 Msa0582110:intron 35.0%
!! TTACAACTCTTCTAGAGCAA+AGG - chr4_2:37955-37974 Msa0582110:CDS 35.0%
GAAAGCTTCTTCAGAATCTA+TGG - chr4_2:37977-37996 Msa0582110:intron 35.0%
CCGGAAATCATAACATGAAG+TGG + chr4_2:33410-33429 None:intergenic 40.0%
CAATTTGAGCCTATGAAGCA+TGG - chr4_2:33511-33530 Msa0582110:intron 40.0%
TATGAAGCATGGATGTTCCT+CGG - chr4_2:33522-33541 Msa0582110:intron 40.0%
ATGAAGCACGGATAAAGACA+CGG + chr4_2:33616-33635 None:intergenic 40.0%
CACTAGACTAGAGTAAGCAT+AGG + chr4_2:33841-33860 None:intergenic 40.0%
ACTCTAGTCTAGTGTGCTAA+AGG - chr4_2:33847-33866 Msa0582110:intron 40.0%
!!! AAAGGCACCCAAGTATTTTC+CGG - chr4_2:33865-33884 Msa0582110:intron 40.0%
ATGCTTACTCTAATCTGCCA+TGG - chr4_2:33902-33921 Msa0582110:intron 40.0%
! TTGTCATTTATCGACCATGG+TGG + chr4_2:33930-33949 None:intergenic 40.0%
GCGTACAATACACCAATTGT+GGG + chr4_2:34005-34024 None:intergenic 40.0%
TGCGTACAATACACCAATTG+TGG + chr4_2:34006-34025 None:intergenic 40.0%
!! AATCATTTTGATCCATCGGG+TGG - chr4_2:34075-34094 Msa0582110:intron 40.0%
!! ATCATTTTGATCCATCGGGT+GGG - chr4_2:34076-34095 Msa0582110:intron 40.0%
! ACAAATCCCCCAATTTTGGA+GGG + chr4_2:34243-34262 None:intergenic 40.0%
! TACAAATCCCCCAATTTTGG+AGG + chr4_2:34244-34263 None:intergenic 40.0%
TCCAAAATTGGGGGATTTGT+AGG - chr4_2:34243-34262 Msa0582110:intron 40.0%
CCAAAATTGGGGGATTTGTA+GGG - chr4_2:34244-34263 Msa0582110:intron 40.0%
CAAAATTGGGGGATTTGTAG+GGG - chr4_2:34245-34264 Msa0582110:intron 40.0%
TCATGTATAGTTCACAAGGG+AGG + chr4_2:34392-34411 None:intergenic 40.0%
TATTCCATTTGGTCAAGAGG+AGG + chr4_2:34429-34448 None:intergenic 40.0%
CGATATTCCATTTGGTCAAG+AGG + chr4_2:34432-34451 None:intergenic 40.0%
! AGGTAAATTTGGTTCAACCG+AGG + chr4_2:34474-34493 None:intergenic 40.0%
ATTTACCTAGAGGATGCTTG+GGG - chr4_2:34486-34505 Msa0582110:intron 40.0%
GTGTGTCTTACCAGAATGTT+TGG - chr4_2:34549-34568 Msa0582110:intron 40.0%
TGAAAGGGATCCAAACATTC+TGG + chr4_2:34562-34581 None:intergenic 40.0%
ATGTTTGGATCCCTTTCACA+TGG - chr4_2:34564-34583 Msa0582110:intron 40.0%
AGCAATTGCACCATGTGAAA+GGG + chr4_2:34577-34596 None:intergenic 40.0%
CAAAAGATGCAATGGTTGCA+AGG + chr4_2:34648-34667 None:intergenic 40.0%
GGAATTTGGATCCCTTTGTA+AGG + chr4_2:34674-34693 None:intergenic 40.0%
TGCATATATGCAGTACGGTT+TGG - chr4_2:34800-34819 Msa0582110:intron 40.0%
TTGCTGCTGGAGATTTACTT+AGG - chr4_2:34829-34848 Msa0582110:CDS 40.0%
TGCTGCTGGAGATTTACTTA+GGG - chr4_2:34830-34849 Msa0582110:CDS 40.0%
! ACGCTTTCCATTTTCACTTC+CGG + chr4_2:34868-34887 None:intergenic 40.0%
ATATATGGAGAAGGGACAGT+TGG - chr4_2:34896-34915 Msa0582110:intron 40.0%
CCCTGATGAAATAGTTGTCA+TGG - chr4_2:34920-34939 Msa0582110:intron 40.0%
TCATGGTATGGTAGGGTAAA+TGG - chr4_2:34937-34956 Msa0582110:intron 40.0%
AAGCCAGATTCTGTAGAGAA+TGG - chr4_2:35048-35067 Msa0582110:intron 40.0%
CAACCATTCTCTACAGAATC+TGG + chr4_2:35054-35073 None:intergenic 40.0%
CAGATTCTGTAGAGAATGGT+TGG - chr4_2:35052-35071 Msa0582110:CDS 40.0%
!!! TGTAGAGAATGGTTGGCTTT+TGG - chr4_2:35059-35078 Msa0582110:CDS 40.0%
CTACTGCACTTAAGGAGTTA+GGG - chr4_2:35109-35128 Msa0582110:CDS 40.0%
! CTTCTAGAGGTAAACACTTG+TGG - chr4_2:35153-35172 Msa0582110:CDS 40.0%
!!! AGATGCAAGGTTTTGTTGAG+AGG + chr4_2:35355-35374 None:intergenic 40.0%
TCTCAACAAAACCTTGCATC+TGG - chr4_2:35354-35373 Msa0582110:intron 40.0%
TAGTCATAACTCCAGATGCA+AGG + chr4_2:35368-35387 None:intergenic 40.0%
GGTACCAAACTGTAAGAGTT+AGG - chr4_2:35399-35418 Msa0582110:intron 40.0%
AGGTCAAGCTCTCTAATACT+TGG + chr4_2:35560-35579 None:intergenic 40.0%
!! GTTACGGAAGGGAAGTATTT+AGG + chr4_2:35590-35609 None:intergenic 40.0%
!! TGGATGGTAATGGCTGTATA+GGG + chr4_2:35795-35814 None:intergenic 40.0%
!! TTGGATGGTAATGGCTGTAT+AGG + chr4_2:35796-35815 None:intergenic 40.0%
CCATTACCATCCAAGTGAAA+GGG - chr4_2:35802-35821 Msa0582110:intron 40.0%
CATTACCATCCAAGTGAAAG+GGG - chr4_2:35803-35822 Msa0582110:intron 40.0%
GTTTCTACGAAGTGGCAAAA+TGG + chr4_2:35873-35892 None:intergenic 40.0%
!! TAGCAGAATAGTGGACTCAT+TGG - chr4_2:35927-35946 Msa0582110:intron 40.0%
GGTGTCTGAAGATATTCTTG+TGG - chr4_2:36160-36179 Msa0582110:intron 40.0%
ATTCTTGTGGAGAGAGTAGT+TGG - chr4_2:36173-36192 Msa0582110:intron 40.0%
AGGAGATTAGATCCTGTTAC+TGG - chr4_2:36197-36216 Msa0582110:CDS 40.0%
GGAGATTAGATCCTGTTACT+GGG - chr4_2:36198-36217 Msa0582110:CDS 40.0%
TCCAGAGACAAAAGAAATCG+CGG - chr4_2:36247-36266 Msa0582110:CDS 40.0%
AGACAAAAGAAATCGCGGAT+AGG - chr4_2:36252-36271 Msa0582110:CDS 40.0%
GAACACCCATCATCAAAATG+TGG - chr4_2:36489-36508 Msa0582110:CDS 40.0%
!! AGCCTCCACATTTTGATGAT+GGG + chr4_2:36497-36516 None:intergenic 40.0%
ATACACGTGTCAACATGAGT+TGG - chr4_2:36602-36621 Msa0582110:intron 40.0%
TACACGTGTCAACATGAGTT+GGG - chr4_2:36603-36622 Msa0582110:intron 40.0%
AATGGAGACAGAAAATGGAG+AGG + chr4_2:36631-36650 None:intergenic 40.0%
GGGAAAATGGAGACAGAAAA+TGG + chr4_2:36636-36655 None:intergenic 40.0%
! GTAGTAATGGAGAGGGAAAA+TGG + chr4_2:36649-36668 None:intergenic 40.0%
GTATCCTTACAAGATGTGGA+CGG + chr4_2:36808-36827 None:intergenic 40.0%
AGACGTATCCTTACAAGATG+TGG + chr4_2:36812-36831 None:intergenic 40.0%
CTTGTAAGGATACGTCTATG+AGG - chr4_2:36815-36834 Msa0582110:intron 40.0%
GTCATAGTGTAAGCAAAACG+AGG - chr4_2:37075-37094 Msa0582110:intron 40.0%
AGCTAGAAAACCCTGATGAT+TGG - chr4_2:37273-37292 Msa0582110:intron 40.0%
TTTCCTCACACCAATCATCA+GGG + chr4_2:37286-37305 None:intergenic 40.0%
! TTTTCCTCACACCAATCATC+AGG + chr4_2:37287-37306 None:intergenic 40.0%
GGTGTGAGGAAAAATGATTG+AGG - chr4_2:37294-37313 Msa0582110:intron 40.0%
GAGGAAAAATGATTGAGGGA+TGG - chr4_2:37299-37318 Msa0582110:intron 40.0%
TTGAGGGATGGGTGATAAAT+AGG - chr4_2:37311-37330 Msa0582110:intron 40.0%
ATTTCACAAGGCCACCATAA+AGG - chr4_2:37628-37647 Msa0582110:intron 40.0%
TTTCACAAGGCCACCATAAA+GGG - chr4_2:37629-37648 Msa0582110:intron 40.0%
GTCATACGATGTCAATTTCG+GGG - chr4_2:37710-37729 Msa0582110:intron 40.0%
AGCAAATACTTCCTTCTGAG+AGG + chr4_2:37919-37938 None:intergenic 40.0%
! TGTAGCGAGTCATAGTTTGT+TGG - chr4_2:38207-38226 Msa0582110:CDS 40.0%
!! CGAGTCATAGTTTGTTGGTT+TGG - chr4_2:38212-38231 Msa0582110:CDS 40.0%
CATATGAACCACCAGTAACA+GGG + chr4_2:38243-38262 None:intergenic 40.0%
GATTCAGATTGTGAAAGCGG+TGG - chr4_2:33367-33386 Msa0582110:CDS 45.0%
TGAGTTCCTTTACCAGAAGC+AGG + chr4_2:33437-33456 None:intergenic 45.0%
GAGGAACATCCATGCTTCAT+AGG + chr4_2:33523-33542 None:intergenic 45.0%
ATTAGACATGTGTCCGACAC+CGG + chr4_2:33560-33579 None:intergenic 45.0%
AGTAAAGGTCCCGCATACAT+AGG - chr4_2:33965-33984 Msa0582110:intron 45.0%
GTAAAGGTCCCGCATACATA+GGG - chr4_2:33966-33985 Msa0582110:intron 45.0%
!! TCATTTTGATCCATCGGGTG+GGG - chr4_2:34077-34096 Msa0582110:intron 45.0%
GGGTTGTGTTGGACTAAGTT+TGG - chr4_2:34107-34126 Msa0582110:intron 45.0%
TTTGCCTGTCACATAGTGTC+TGG - chr4_2:34148-34167 Msa0582110:intron 45.0%
! TCTGGCTTCCCTCCAAAATT+GGG - chr4_2:34232-34251 Msa0582110:intron 45.0%
! CCCTACAAATCCCCCAATTT+TGG + chr4_2:34247-34266 None:intergenic 45.0%
! AATTTGGTTCAACCGAGGAG+AGG + chr4_2:34469-34488 None:intergenic 45.0%
GTAAGACACACTACGAGTTC+GGG + chr4_2:34540-34559 None:intergenic 45.0%
GGTAAGACACACTACGAGTT+CGG + chr4_2:34541-34560 None:intergenic 45.0%
CAGCAATTGCACCATGTGAA+AGG + chr4_2:34578-34597 None:intergenic 45.0%
AACTTTGGACCTGGATCCAA+TGG - chr4_2:34622-34641 Msa0582110:intron 45.0%
TGCTGGAGATTTACTTAGGG+CGG - chr4_2:34833-34852 Msa0582110:CDS 45.0%
CTTAGGGCGGAAATTGAAAC+CGG - chr4_2:34846-34865 Msa0582110:CDS 45.0%
!!! GAGAATGGTTGGCTTTTGGA+TGG - chr4_2:35063-35082 Msa0582110:CDS 45.0%
ATATCCCAGGAGCTTATCAC+AGG - chr4_2:35086-35105 Msa0582110:CDS 45.0%
ATCACAGGCTACTGCACTTA+AGG - chr4_2:35101-35120 Msa0582110:CDS 45.0%
GCTACTGCACTTAAGGAGTT+AGG - chr4_2:35108-35127 Msa0582110:CDS 45.0%
AAGGTGATACGGGTTTCACT+TGG - chr4_2:35530-35549 Msa0582110:intron 45.0%
!! GGAAGGGAAGTATTTAGGGA+GGG + chr4_2:35585-35604 None:intergenic 45.0%
GTGTTTAGGTGGTTACGGAA+GGG + chr4_2:35601-35620 None:intergenic 45.0%
AGTGTTTAGGTGGTTACGGA+AGG + chr4_2:35602-35621 None:intergenic 45.0%
!! GGGAAGTGTTTAGGTGGTTA+CGG + chr4_2:35606-35625 None:intergenic 45.0%
!! GTTACTGGGAAGTGTTTAGG+TGG + chr4_2:35612-35631 None:intergenic 45.0%
!! GTGGTTACTGGGAAGTGTTT+AGG + chr4_2:35615-35634 None:intergenic 45.0%
ACAGGGGAAAAGTGGTTACT+GGG + chr4_2:35626-35645 None:intergenic 45.0%
GCCATTACCATCCAAGTGAA+AGG - chr4_2:35801-35820 Msa0582110:intron 45.0%
CCCTTTCACTTGGATGGTAA+TGG + chr4_2:35805-35824 None:intergenic 45.0%
GGGATGATGTAGCAGAATAG+TGG - chr4_2:35918-35937 Msa0582110:intron 45.0%
TGTTGTGACCTTGCAGTTGA+AGG - chr4_2:36033-36052 Msa0582110:intron 45.0%
TAGTGTCTCCTTCAACTGCA+AGG + chr4_2:36044-36063 None:intergenic 45.0%
TTGTGGAGAGAGTAGTTGGA+AGG - chr4_2:36177-36196 Msa0582110:intron 45.0%
! GCGATTTCTTTTGTCTCTGG+AGG + chr4_2:36248-36267 None:intergenic 45.0%
! TCCGCGATTTCTTTTGTCTC+TGG + chr4_2:36251-36270 None:intergenic 45.0%
ATGCTCTCTGTTGACAACCA+TGG - chr4_2:36379-36398 Msa0582110:intron 45.0%
TGCTCTCTGTTGACAACCAT+GGG - chr4_2:36380-36399 Msa0582110:intron 45.0%
CACCCATCATCAAAATGTGG+AGG - chr4_2:36492-36511 Msa0582110:CDS 45.0%
!! CAGCCTCCACATTTTGATGA+TGG + chr4_2:36498-36517 None:intergenic 45.0%
! GGAGAGCGTAAAAAATGGAG+AGG - chr4_2:36773-36792 Msa0582110:intron 45.0%
AACTCCGTCCACATCTTGTA+AGG - chr4_2:36801-36820 Msa0582110:intron 45.0%
!! AAGGATTGGCTACTCCACAT+TGG + chr4_2:36959-36978 None:intergenic 45.0%
TCTACTGCGGTAACAAGGAT+TGG + chr4_2:36973-36992 None:intergenic 45.0%
GGTAAACACACACACATCAG+TGG - chr4_2:37097-37116 Msa0582110:intron 45.0%
AAACCCTGATGATTGGTGTG+AGG - chr4_2:37280-37299 Msa0582110:intron 45.0%
CATGCACTCGAAACACTATC+TGG - chr4_2:37751-37770 Msa0582110:intron 45.0%
TGTCTTGGCTATGCATTAGC+AGG + chr4_2:37823-37842 None:intergenic 45.0%
TTAACATGGTGCCTTGCTGA+AGG - chr4_2:38053-38072 Msa0582110:intron 45.0%
GCATATGAACCACCAGTAAC+AGG + chr4_2:38244-38263 None:intergenic 45.0%
!!! CAATTTTAAAATAAAATTAA+AGG - chr4_2:35892-35911 Msa0582110:intron 5.0%
ATGAGAAAAGGGTCGCGAAG+AGG + chr4_2:33269-33288 None:intergenic 50.0%
TTTACCAGAAGCAGGTGCAC+CGG + chr4_2:33429-33448 None:intergenic 50.0%
GCATGGATGTTCCTCGGATT+AGG - chr4_2:33528-33547 Msa0582110:intron 50.0%
TTAGACATGTGTCCGACACC+GGG + chr4_2:33559-33578 None:intergenic 50.0%
CACGGATAAAGACACGGACA+CGG + chr4_2:33610-33629 None:intergenic 50.0%
TTCCCAGACCCTATGTATGC+GGG + chr4_2:33977-33996 None:intergenic 50.0%
CTTCCCAGACCCTATGTATG+CGG + chr4_2:33978-33997 None:intergenic 50.0%
GCATACATAGGGTCTGGGAA+GGG - chr4_2:33977-33996 Msa0582110:intron 50.0%
CATACATAGGGTCTGGGAAG+GGG - chr4_2:33978-33997 Msa0582110:intron 50.0%
CTGTCACATAGTGTCTGGCT+GGG - chr4_2:34153-34172 Msa0582110:intron 50.0%
TGTCACATAGTGTCTGGCTG+GGG - chr4_2:34154-34173 Msa0582110:intron 50.0%
TAGTGTCTGGCTGGGGAAAA+TGG - chr4_2:34161-34180 Msa0582110:intron 50.0%
GGAAAATGGAGTGGACGGAA+GGG - chr4_2:34175-34194 Msa0582110:intron 50.0%
! CTCTGGCTTCCCTCCAAAAT+TGG - chr4_2:34231-34250 Msa0582110:intron 50.0%
CTGGCTTCCCTCCAAAATTG+GGG - chr4_2:34233-34252 Msa0582110:intron 50.0%
TGGCTTCCCTCCAAAATTGG+GGG - chr4_2:34234-34253 Msa0582110:intron 50.0%
TTCGCCTCCTCTTGACCAAA+TGG - chr4_2:34422-34441 Msa0582110:intron 50.0%
CACATGGTGCAATTGCTGCA+AGG - chr4_2:34580-34599 Msa0582110:intron 50.0%
ATGGTGCAATTGCTGCAAGG+CGG - chr4_2:34583-34602 Msa0582110:intron 50.0%
TGCAATGGTTGCAAGGCCAT+TGG + chr4_2:34641-34660 None:intergenic 50.0%
! GGCTTTTGGATGGATATCCC+AGG - chr4_2:35073-35092 Msa0582110:CDS 50.0%
GTAGCCTGTGATAAGCTCCT+GGG + chr4_2:35093-35112 None:intergenic 50.0%
AGTAGCCTGTGATAAGCTCC+TGG + chr4_2:35094-35113 None:intergenic 50.0%
!! GGAAGTATTTAGGGAGGGAG+AGG + chr4_2:35580-35599 None:intergenic 50.0%
!! CGGAAGGGAAGTATTTAGGG+AGG + chr4_2:35586-35605 None:intergenic 50.0%
GACAGGGGAAAAGTGGTTAC+TGG + chr4_2:35627-35646 None:intergenic 50.0%
AGGGAAAGACAGGGGAAAAG+TGG + chr4_2:35634-35653 None:intergenic 50.0%
CAATGCATGCCCCTTTCACT+TGG + chr4_2:35815-35834 None:intergenic 50.0%
ATAGGCTGAAACACTGGCAG+TGG - chr4_2:37329-37348 Msa0582110:intron 50.0%
AGATGACACCGCTTGTCACA+TGG - chr4_2:37577-37596 Msa0582110:intron 50.0%
! GTTTGGTTCCTCCCTGTTAC+TGG - chr4_2:38229-38248 Msa0582110:CDS 50.0%
ATGAACCACCAGTAACAGGG+AGG + chr4_2:38240-38259 None:intergenic 50.0%
CGCGAAGAGGATGAACGAAG+AGG + chr4_2:33256-33275 None:intergenic 55.0%
TGTGAAAGCGGTGGCGAAGA+CGG - chr4_2:33376-33395 Msa0582110:CDS 55.0%
ATTTCCGGTGCACCTGCTTC+TGG - chr4_2:33422-33441 Msa0582110:CDS 55.0%
GGTGCACCTGCTTCTGGTAA+AGG - chr4_2:33428-33447 Msa0582110:CDS 55.0%
! TCCTCGGATTAGGCATGTCC+CGG - chr4_2:33538-33557 Msa0582110:intron 55.0%
GATTAGGCATGTCCCGGTGT+CGG - chr4_2:33544-33563 Msa0582110:intron 55.0%
CAATGGGCCCAGTGCAGTAA+AGG - chr4_2:33950-33969 Msa0582110:intron 55.0%
TGCGGGACCTTTACTGCACT+GGG + chr4_2:33960-33979 None:intergenic 55.0%
ATGCGGGACCTTTACTGCAC+TGG + chr4_2:33961-33980 None:intergenic 55.0%
GTCCCGCATACATAGGGTCT+GGG - chr4_2:33972-33991 Msa0582110:intron 55.0%
CGCATACATAGGGTCTGGGA+AGG - chr4_2:33976-33995 Msa0582110:intron 55.0%
TTTGATCCATCGGGTGGGGT+AGG - chr4_2:34081-34100 Msa0582110:intron 55.0%
CCAGCCAGACACTATGTGAC+AGG + chr4_2:34155-34174 None:intergenic 55.0%
CCTGTCACATAGTGTCTGGC+TGG - chr4_2:34152-34171 Msa0582110:intron 55.0%
TCTGGCTGGGGAAAATGGAG+TGG - chr4_2:34166-34185 Msa0582110:intron 55.0%
GCTGGGGAAAATGGAGTGGA+CGG - chr4_2:34170-34189 Msa0582110:intron 55.0%
GGGAAAATGGAGTGGACGGA+AGG - chr4_2:34174-34193 Msa0582110:intron 55.0%
AATGGAGTGGACGGAAGGGA+AGG - chr4_2:34179-34198 Msa0582110:intron 55.0%
ATGGAGTGGACGGAAGGGAA+GGG - chr4_2:34180-34199 Msa0582110:intron 55.0%
ACGGAAGGGAAGGGAAGAGA+GGG - chr4_2:34189-34208 Msa0582110:intron 55.0%
GGTTCAACCGAGGAGAGGAA+AGG + chr4_2:34464-34483 None:intergenic 55.0%
AGAGTCCCCAAGCATCCTCT+AGG + chr4_2:34494-34513 None:intergenic 55.0%
TGCAATTGCTGCAAGGCGGT+TGG - chr4_2:34587-34606 Msa0582110:intron 55.0%
GTTGCAAGGCCATTGGATCC+AGG + chr4_2:34634-34653 None:intergenic 55.0%
!! GGTTTGGTGCATGTTGCTGC+TGG - chr4_2:34816-34835 Msa0582110:CDS 55.0%
GCATGCCCCTTTCACTTGGA+TGG + chr4_2:35811-35830 None:intergenic 55.0%
TAAGGTTCGGGCTCGAGCAA+CGG - chr4_2:37413-37432 Msa0582110:intron 55.0%
TGGTTCCTCCCTGTTACTGG+TGG - chr4_2:38232-38251 Msa0582110:CDS 55.0%
ACCGGGACATGCCTAATCCG+AGG + chr4_2:33542-33561 None:intergenic 60.0%
AATCTGCCATGGCGCCACCA+TGG - chr4_2:33913-33932 Msa0582110:intron 60.0%
! TATCGACCATGGTGGCGCCA+TGG + chr4_2:33922-33941 None:intergenic 60.0%
GGTCCCGCATACATAGGGTC+TGG - chr4_2:33971-33990 Msa0582110:intron 60.0%
CTGGGAAGGGGTCCCACAAT+TGG - chr4_2:33990-34009 Msa0582110:intron 60.0%
ATCCATCGGGTGGGGTAGGT+AGG - chr4_2:34085-34104 Msa0582110:intron 60.0%
TCCATCGGGTGGGGTAGGTA+GGG - chr4_2:34086-34105 Msa0582110:intron 60.0%
GGGGTAGGTAGGGGTTGTGT+TGG - chr4_2:34096-34115 Msa0582110:intron 60.0%
GACGGAAGGGAAGGGAAGAG+AGG - chr4_2:34188-34207 Msa0582110:intron 60.0%
GTGTGCGTCAAACGAGCCGT+TGG + chr4_2:37052-37071 None:intergenic 60.0%
CGGCTCGTTTGACGCACACT+TGG - chr4_2:37053-37072 Msa0582110:intron 60.0%
AAGGTTCGGGCTCGAGCAAC+GGG - chr4_2:37414-37433 Msa0582110:intron 60.0%
GAAAGCGGTGGCGAAGACGG+AGG - chr4_2:33379-33398 Msa0582110:CDS 65.0%
CCATCGGGTGGGGTAGGTAG+GGG - chr4_2:34087-34106 Msa0582110:intron 65.0%
AGCGGTGGCGAAGACGGAGG+AGG - chr4_2:33382-33401 Msa0582110:CDS 70.0%
CCCCTACCTACCCCACCCGA+TGG + chr4_2:34090-34109 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 32997 38360 32997 ID=Msa0582110;Name=Msa0582110
chr4_2 mRNA 32997 38360 32997 ID=Msa0582110-mRNA-1;Parent=Msa0582110;Name=Msa0582110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=76|0.83|0.85|1|0.83|0.85|7|353|285
chr4_2 exon 32997 33454 32997 ID=Msa0582110-mRNA-1:exon:9;Parent=Msa0582110-mRNA-1
chr4_2 exon 34808 34882 34808 ID=Msa0582110-mRNA-1:exon:8;Parent=Msa0582110-mRNA-1
chr4_2 exon 35050 35196 35050 ID=Msa0582110-mRNA-1:exon:7;Parent=Msa0582110-mRNA-1
chr4_2 exon 36196 36330 36196 ID=Msa0582110-mRNA-1:exon:6;Parent=Msa0582110-mRNA-1
chr4_2 exon 36416 36544 36416 ID=Msa0582110-mRNA-1:exon:5;Parent=Msa0582110-mRNA-1
chr4_2 exon 37942 37983 37942 ID=Msa0582110-mRNA-1:exon:4;Parent=Msa0582110-mRNA-1
chr4_2 exon 38060 38360 38060 ID=Msa0582110-mRNA-1:exon:3;Parent=Msa0582110-mRNA-1
chr4_2 five_prime_UTR 38285 38360 38285 ID=Msa0582110-mRNA-1:five_prime_utr;Parent=Msa0582110-mRNA-1
chr4_2 CDS 38060 38284 38060 ID=Msa0582110-mRNA-1:cds;Parent=Msa0582110-mRNA-1
chr4_2 CDS 37942 37983 37942 ID=Msa0582110-mRNA-1:cds;Parent=Msa0582110-mRNA-1
chr4_2 CDS 36416 36544 36416 ID=Msa0582110-mRNA-1:cds;Parent=Msa0582110-mRNA-1
chr4_2 CDS 36196 36330 36196 ID=Msa0582110-mRNA-1:cds;Parent=Msa0582110-mRNA-1
chr4_2 CDS 35050 35196 35050 ID=Msa0582110-mRNA-1:cds;Parent=Msa0582110-mRNA-1
chr4_2 CDS 34808 34882 34808 ID=Msa0582110-mRNA-1:cds;Parent=Msa0582110-mRNA-1
chr4_2 CDS 33350 33454 33350 ID=Msa0582110-mRNA-1:cds;Parent=Msa0582110-mRNA-1
chr4_2 three_prime_UTR 32997 33349 32997 ID=Msa0582110-mRNA-1:three_prime_utr;Parent=Msa0582110-mRNA-1
Gene Sequence

>Msa0582110

ATGGGTTGCAATATCATGAATTTCTCTACCACTTCTTCATCATCTTCTTTGAAGGGACTGTGCAGTCCAATTCCAAATAATAATCATAATCATAATCAGAAGAATAAGCTACAAAAAGCGCTTTCTTCATCTTCTTCATCTTCATTTTCACTTCGTTCTTCTTCTTCATCAAATGTCTTTCCTCTTCGTTCATCCTCTTCGCGACCCTTTTCTCATTCTTCTATGATTGTGAAAGCGGTGGCGAAGACGGAGGAGGAGCCACTTCATTACGGTTTGGTGCATGTTGCTGCTGGAGATTTACTTAGGGCGGAAATTGAAACCGGAAGTGAAAATGGAAAGCGTGCGAAAGAATATATGGAGAAGGGACAGTTGGTCCCTGATGAAATAGTTGTCATGATGGTCAAAGATCGTCTCTTGAAGCCAGATTCTGTAGAGAATGGTTGGCTTTTGGATGGATATCCCAGGAGCTTATCACAGGCTACTGCACTTAAGGAGTTAGGGTTTAAGCCTGATATTTTCATTCTTCTAGAGGTGTCTGAAGATATTCTTGTGGAGAGAGTAGTTGGAAGGAGATTAGATCCTGTTACTGGGAAGATATATCATTTGAAGTATTCTCCTCCAGAGACAAAAGAAATCGCGGATAGGCTCACCCAACGTTTTGATGATACTGAAGAGAAGGTAAAGTTGCGATTGAACACCCATCATCAAAATGTGGAGGCTGTCCTTTCCATGTATAAAGATATAACAATTAAGATTAATGGAAATTCCTCTCAGAAGGAAGTATTTGCTCAAATTGATGGTGCACTTACAACTCTTCTAGAGCAAAGGAAAGCTTCTTCAGAATCTATGGTAGCATAG

Protein sequence

>Msa0582110

MGCNIMNFSTTSSSSSLKGLCSPIPNNNHNHNQKNKLQKALSSSSSSSFSLRSSSSSNVFPLRSSSSRPFSHSSMIVKAVAKTEEEPLHYGLVHVAAGDLLRAEIETGSENGKRAKEYMEKGQLVPDEIVVMMVKDRLLKPDSVENGWLLDGYPRSLSQATALKELGFKPDIFILLEVSEDILVERVVGRRLDPVTGKIYHLKYSPPETKEIADRLTQRFDDTEEKVKLRLNTHHQNVEAVLSMYKDITIKINGNSSQKEVFAQIDGALTTLLEQRKASSESMVA*