AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428420 MtrunA17_Chr2g0303671 92.233 309 24 0 1 309 1 309 0.0 588
Msa1428420 MtrunA17_Chr5g0405451 44.712 208 114 1 97 304 219 425 5.16e-55 184
Msa1428420 MtrunA17_Chr5g0406201 48.235 170 88 0 138 307 291 460 1.52e-52 179
Msa1428420 MtrunA17_Chr5g0418551 36.232 138 88 0 147 284 89 226 1.75e-21 91.3
Msa1428420 MtrunA17_Chr5g0418551 34.146 123 78 3 174 294 83 204 8.74e-15 72.8
Msa1428420 MtrunA17_Chr3g0127131 39.091 110 61 3 193 298 246 353 1.60e-14 73.2
Msa1428420 MtrunA17_Chr6g0461061 28.652 178 124 3 126 302 189 364 8.73e-13 68.6
Msa1428420 MtrunA17_Chr5g0409271 29.139 151 104 2 139 288 4 152 7.63e-12 64.7
Msa1428420 MtrunA17_Chr2g0328031 30.719 153 93 2 132 271 30 182 1.27e-11 65.1
Msa1428420 MtrunA17_Chr1g0211231 26.374 182 130 2 102 279 14 195 1.42e-11 65.1
Msa1428420 MtrunA17_Chr1g0180301 34.167 120 72 1 174 286 64 183 2.49e-11 62.0
Msa1428420 MtrunA17_Chr8g0361891 31.481 108 74 0 164 271 245 352 2.54e-11 63.9
Msa1428420 MtrunA17_Chr4g0064931 28.177 181 123 3 105 284 33 207 4.54e-11 63.5
Msa1428420 MtrunA17_Chr5g0409081 30.469 128 83 2 181 302 29 156 6.03e-11 60.5
Msa1428420 MtrunA17_Chr1g0211241 31.667 120 78 2 167 282 221 340 8.69e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428420 AT5G40160.1 61.290 248 88 1 68 307 64 311 6.06e-105 309
Msa1428420 AT5G40160.2 59.227 233 83 2 69 293 65 293 2.01e-88 266
Msa1428420 AT5G66055.1 44.221 199 108 2 111 307 222 419 6.24e-51 174
Msa1428420 AT5G66055.2 42.446 139 77 2 111 247 222 359 6.94e-28 111
Msa1428420 AT2G03430.1 34.783 138 90 0 147 284 82 219 2.93e-18 82.8
Msa1428420 AT2G03430.1 28.814 177 119 4 130 301 29 203 4.68e-12 65.1
Msa1428420 AT2G25600.1 42.857 84 48 0 194 277 557 640 1.59e-13 71.6
Msa1428420 AT4G27780.1 37.113 97 58 1 193 286 242 338 5.33e-13 69.3
Msa1428420 AT5G53470.1 36.082 97 59 1 193 286 227 323 2.07e-12 67.4
Msa1428420 AT2G14255.1 32.624 141 92 2 150 287 93 233 3.93e-12 67.0
Msa1428420 AT5G13300.1 38.889 90 53 1 200 287 713 802 2.65e-11 64.7
Msa1428420 AT5G20350.1 28.804 184 124 3 102 284 25 202 3.33e-11 64.3
Msa1428420 AT3G09890.1 35.514 107 62 1 183 282 75 181 7.21e-11 61.2

Find 70 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAATCTGCACTATGTATT+TGG 0.150367 tig0026345:+44565 Msa1428410:intron
ACAGAATATAACTCCTAATT+TGG 0.193363 tig0026345:-46230 Msa1428420:CDS
TTCTACCACTAACTCCAAAT+TGG 0.221787 tig0026345:-47231 Msa1428420:CDS
TGCAGTATTTCTAGTTCTTC+TGG 0.234735 tig0026345:+46253 None:intergenic
CCCAGGTTCCATGTTCTTGT+TGG 0.250535 tig0026345:+47078 None:intergenic
GTGGAAACCGGCTCCCAATT+TGG 0.255625 tig0026345:+47217 None:intergenic
AAAGTTGTTTAATATTTAAA+TGG 0.256738 tig0026345:-44421 Msa1428420:three_prime_UTR
ATATGTTACGTGCTTCTAAT+TGG 0.266884 tig0026345:-44733 Msa1428420:three_prime_UTR
TTTCAAAATGAAAGCTTTGA+TGG 0.283665 tig0026345:-44665 Msa1428420:three_prime_UTR
TTGGAGTTAGTGGTAGAAAA+AGG 0.292511 tig0026345:+47236 None:intergenic
GCACTTCATAAGGCGGTTAT+AGG 0.299638 tig0026345:-45923 Msa1428420:CDS
CAGGCAACTGAGTTCTATAA+TGG 0.334456 tig0026345:-44796 Msa1428420:exon
TGATATTGATTTCGTCAATA+AGG 0.337108 tig0026345:-46036 Msa1428420:intron
GAAAACATATATGGATTGTT+TGG 0.341709 tig0026345:-47291 Msa1428420:exon
TGTAGGAATGATATATCTAA+TGG 0.348095 tig0026345:-44526 Msa1428420:three_prime_UTR
CCAGGTTCCATGTTCTTGTT+GGG 0.349630 tig0026345:+47079 None:intergenic
AGATAGATCGATAGAAAATA+AGG 0.384701 tig0026345:-45478 Msa1428420:intron
GGCTCCCAATTTGGAGTTAG+TGG 0.384780 tig0026345:+47226 None:intergenic
TCACTGTCACTACGAATATC+TGG 0.387326 tig0026345:+47050 None:intergenic
CTTGCTAGATTAATTAAGAT+AGG 0.413079 tig0026345:-44821 Msa1428420:CDS
CTTCTACATCAATGATTCCT+TGG 0.421877 tig0026345:-44639 Msa1428420:three_prime_UTR
AAGTCTTATTTCAGATATGT+AGG 0.425070 tig0026345:-44543 Msa1428420:three_prime_UTR
TCTACCACTAACTCCAAATT+GGG 0.430028 tig0026345:-47230 Msa1428420:CDS
TTTGTATATTCTGTGGAAAC+CGG 0.439548 tig0026345:+47205 None:intergenic
CTAGGGAGAATTGTGAAGGT+TGG 0.445294 tig0026345:-47148 Msa1428420:CDS
TTTGAACGGCAACATGCAAT+GGG 0.445663 tig0026345:+45544 None:intergenic
TGGAGCCCGCTGCACTCTCT+TGG 0.448549 tig0026345:-46107 Msa1428420:CDS
ATAAATTTATTAGAAAGAAC+AGG 0.449639 tig0026345:+47260 None:intergenic
CCCAACAAGAACATGGAACC+TGG 0.455702 tig0026345:-47079 Msa1428420:CDS
CTGGATATAAGTATATGTTA+TGG 0.458251 tig0026345:-44866 Msa1428420:CDS
CTTTATACTTCTTCAATCAT+CGG 0.458597 tig0026345:-44708 Msa1428420:three_prime_UTR
CTTTGAACGGCAACATGCAA+TGG 0.462361 tig0026345:+45543 None:intergenic
AGGTCTCACTGCACTTCATA+AGG 0.467266 tig0026345:-45933 Msa1428420:CDS
TTGCACCTTTCCGTAAAAGA+TGG 0.475406 tig0026345:+45879 None:intergenic
AATTTATCCACACCTTATCC+TGG 0.484529 tig0026345:+45846 None:intergenic
AGAGACGCAGGACGAGTATG+AGG 0.486038 tig0026345:-46961 Msa1428420:CDS
TGCATGTTGCCGTTCAAAGC+CGG 0.486087 tig0026345:-45539 Msa1428420:CDS
GTAGGAATGATATATCTAAT+GGG 0.487345 tig0026345:-44525 Msa1428420:three_prime_UTR
ATATAACTAAAGATTCAATC+TGG 0.489614 tig0026345:+44752 None:intergenic
TATCGATCTATCTGCGCCAT+TGG 0.492748 tig0026345:+45488 None:intergenic
GACGAAGAAGATAAAAGCCT+TGG 0.496557 tig0026345:-47014 Msa1428420:CDS
ACGAATATCTGGTTCTTCCC+AGG 0.501030 tig0026345:+47061 None:intergenic
CATTATAGAACTCAGTTGCC+TGG 0.505053 tig0026345:+44797 None:intergenic
ATCTCTATTCCGGCTTTGAA+CGG 0.506075 tig0026345:+45530 None:intergenic
AGGCAACTGAGTTCTATAAT+GGG 0.513541 tig0026345:-44795 Msa1428420:exon
AAGTCCTCATGTCCAGGATA+AGG 0.522498 tig0026345:-45858 Msa1428420:intron
TAATAATCGCTCAGGAAGGT+TGG 0.528902 tig0026345:-45569 Msa1428420:intron
TTGCTTTGCACCAACTTGAA+CGG 0.535506 tig0026345:+45726 None:intergenic
AGGTGCAAGTCCTCATGTCC+AGG 0.541101 tig0026345:-45864 Msa1428420:CDS
AGATTAATTAAGATAGGTCC+AGG 0.543202 tig0026345:-44815 Msa1428420:CDS
CTTCATTATGCCGTTCAAGT+TGG 0.552276 tig0026345:-45736 Msa1428420:CDS
TTGCAAACCCAACAAGAACA+TGG 0.559818 tig0026345:-47086 Msa1428420:CDS
TATGAGGAGCGTATTAAGAA+AGG 0.561332 tig0026345:-46945 Msa1428420:intron
ATGGACAAGCTTCTTGAAAG+TGG 0.562294 tig0026345:-46062 Msa1428420:CDS
ATAAGCCAAGAGAGTGCAGC+GGG 0.573360 tig0026345:+46102 None:intergenic
GCAGGAAGAGACAGAGACGC+AGG 0.575387 tig0026345:-46973 Msa1428420:CDS
ACTAACTCCAAATTGGGAGC+CGG 0.582328 tig0026345:-47224 Msa1428420:CDS
TCAGGACGGGAAAACAGCAC+TGG 0.590325 tig0026345:-44885 Msa1428420:intron
CTATCTTAATTAATCTAGCA+AGG 0.596792 tig0026345:+44822 None:intergenic
ACTGAGTTCTATAATGGGCG+AGG 0.602333 tig0026345:-44790 Msa1428420:exon
GATAAGCCAAGAGAGTGCAG+CGG 0.632445 tig0026345:+46101 None:intergenic
CCAACAAGAACATGGAACCT+GGG 0.641739 tig0026345:-47078 Msa1428420:CDS
TTGTACGTTTGTATATTCTG+TGG 0.644911 tig0026345:+47198 None:intergenic
CACACCTTATCCTGGACATG+AGG 0.646294 tig0026345:+45854 None:intergenic
GTTGCAATCAAATCAAGCAG+AGG 0.653809 tig0026345:-47119 Msa1428420:CDS
AGAATTGTAACAAGTTGACG+TGG 0.659312 tig0026345:-44484 Msa1428420:three_prime_UTR
ACTTGAACGGCATAATGAAG+CGG 0.667600 tig0026345:+45739 None:intergenic
TCTCACTGCACTTCATAAGG+CGG 0.692716 tig0026345:-45930 Msa1428420:CDS
ATACAATGTTGATGTCAATG+TGG 0.742113 tig0026345:-45683 Msa1428420:CDS
TTGAACGGCAACATGCAATG+GGG 0.746359 tig0026345:+45545 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTATTTATTTAT+TGG + tig0026345:45342-45361 None:intergenic 0.0%
!! TAAAAAAATATATTGAATGA+TGG - tig0026345:45351-45370 Msa1428420:intron 10.0%
!! TGTTTATATATTTATTGATA+TGG - tig0026345:45939-45958 Msa1428420:intron 10.0%
!! AAAGTTGTTTAATATTTAAA+TGG - tig0026345:47295-47314 Msa1428420:exon 10.0%
!!! TTTATTTTTTTCTCTTTTTC+AGG - tig0026345:44403-44422 Msa1428420:three_prime_UTR 15.0%
!! ATAAATTTATTAGAAAGAAC+AGG + tig0026345:44459-44478 Msa1428410:intron 15.0%
!!! TCAGTCTAAATTTTAATAAT+TGG - tig0026345:44999-45018 Msa1428420:intron 15.0%
!!! TAACAAAAGTATCAATTTAT+AGG + tig0026345:45417-45436 None:intergenic 15.0%
!! TAGAAAAAAAATATTAGATG+AGG - tig0026345:46366-46385 Msa1428420:intron 15.0%
!! AGAAAAAAAATATTAGATGA+GGG - tig0026345:46367-46386 Msa1428420:intron 15.0%
!!! TTTTGATTGTCTAATTAATT+CGG + tig0026345:46407-46426 None:intergenic 15.0%
!! ATAAGATATGACAAAAAAGA+AGG - tig0026345:45191-45210 Msa1428420:intron 20.0%
!!! GATGATATTTTTTCCAAATT+AGG + tig0026345:45502-45521 None:intergenic 20.0%
!!! ATCATTTCAGATTTTTAGTA+TGG - tig0026345:45635-45654 Msa1428420:intron 20.0%
!! TATATATTTATTGATATGGC+AGG - tig0026345:45943-45962 Msa1428420:intron 20.0%
!! TCAATAATTAATATGCAACA+TGG - tig0026345:46289-46308 Msa1428420:intron 20.0%
!!! ACTTATACATACACTTTTAT+AGG - tig0026345:46649-46668 Msa1428420:intron 20.0%
!! ATATAACTAAAGATTCAATC+TGG + tig0026345:46967-46986 None:intergenic 20.0%
!!! GCTTTCATTTTGAAAAATAT+CGG + tig0026345:47046-47065 None:intergenic 20.0%
!!! CTTTTTCAGGAAAACATATA+TGG - tig0026345:44416-44435 Msa1428420:three_prime_UTR 25.0%
!! GAAAACATATATGGATTGTT+TGG - tig0026345:44425-44444 Msa1428420:three_prime_UTR 25.0%
!! AGAGAGACATAATTTTTGTT+TGG + tig0026345:44544-44563 Msa1428410:intron 25.0%
!! AATTATGTCTCTCTTTTTCT+AGG - tig0026345:44550-44569 Msa1428420:three_prime_UTR 25.0%
!! ATTATGTCTCTCTTTTTCTA+GGG - tig0026345:44551-44570 Msa1428420:three_prime_UTR 25.0%
!! GTTTTCAATATCATGACATA+TGG + tig0026345:44835-44854 None:intergenic 25.0%
! TATGTCATGATATTGAAAAC+TGG - tig0026345:44835-44854 Msa1428420:CDS 25.0%
! ATGTCATGATATTGAAAACT+GGG - tig0026345:44836-44855 Msa1428420:CDS 25.0%
! TTAATAATTGGTCAGAAGTT+TGG - tig0026345:45011-45030 Msa1428420:intron 25.0%
! TAATAATTGGTCAGAAGTTT+GGG - tig0026345:45012-45031 Msa1428420:intron 25.0%
!! AACCTTTTAATCCAAGTATA+GGG + tig0026345:45047-45066 None:intergenic 25.0%
!! AAACCTTTTAATCCAAGTAT+AGG + tig0026345:45048-45067 None:intergenic 25.0%
! AGGTTTACAGTTTATCATAT+AGG - tig0026345:45062-45081 Msa1428420:intron 25.0%
! TAAGAGAAAAAACACAACAA+GGG + tig0026345:45110-45129 None:intergenic 25.0%
! TTAAGAGAAAAAACACAACA+AGG + tig0026345:45111-45130 None:intergenic 25.0%
!!! TAAAGCAGTATTTTGAAAAC+TGG + tig0026345:45238-45257 None:intergenic 25.0%
!!! TTTACACATTTCTCCTTTTT+TGG - tig0026345:45254-45273 Msa1428420:intron 25.0%
! TTCGTACTTTATACTTTCAA+TGG - tig0026345:45279-45298 Msa1428420:intron 25.0%
!!! AATGGTTTTAAGCTTTGATA+AGG - tig0026345:45297-45316 Msa1428420:intron 25.0%
! ATTGGAGATATTCAACAATT+AGG + tig0026345:45324-45343 None:intergenic 25.0%
! ACAGAATATAACTCCTAATT+TGG - tig0026345:45486-45505 Msa1428420:CDS 25.0%
! TTTCATGTATTCAGGAAAAA+TGG - tig0026345:45589-45608 Msa1428420:intron 25.0%
!!! TGATATTGATTTCGTCAATA+AGG - tig0026345:45680-45699 Msa1428420:CDS 25.0%
!! CAATTATCTTATTTACGACT+AGG + tig0026345:45752-45771 None:intergenic 25.0%
! CTAGTCGTAAATAAGATAAT+TGG - tig0026345:45750-45769 Msa1428420:CDS 25.0%
! TTTACTATTAATAATCGCTC+AGG - tig0026345:46139-46158 Msa1428420:intron 25.0%
! AGATAGATCGATAGAAAATA+AGG - tig0026345:46238-46257 Msa1428420:CDS 25.0%
! TAATAGTTCAGTTAATCAGT+TGG - tig0026345:46433-46452 Msa1428420:intron 25.0%
! TTTCATATTAGTTGCAAACT+AGG + tig0026345:46587-46606 None:intergenic 25.0%
!! AATTTGAGTTTATAACTGAC+TGG + tig0026345:46740-46759 None:intergenic 25.0%
! AGTCAGTTATAAACTCAAAT+TGG - tig0026345:46739-46758 Msa1428420:intron 25.0%
! CTGGATATAAGTATATGTTA+TGG - tig0026345:46850-46869 Msa1428420:intron 25.0%
! CTATCTTAATTAATCTAGCA+AGG + tig0026345:46897-46916 None:intergenic 25.0%
! CTTGCTAGATTAATTAAGAT+AGG - tig0026345:46895-46914 Msa1428420:intron 25.0%
! CTTTATACTTCTTCAATCAT+CGG - tig0026345:47008-47027 Msa1428420:CDS 25.0%
!! TTTCAAAATGAAAGCTTTGA+TGG - tig0026345:47051-47070 Msa1428420:CDS 25.0%
! TATAATCTGCACTATGTATT+TGG + tig0026345:47154-47173 None:intergenic 25.0%
!!! AAGTCTTATTTCAGATATGT+AGG - tig0026345:47173-47192 Msa1428420:CDS 25.0%
! TGTAGGAATGATATATCTAA+TGG - tig0026345:47190-47209 Msa1428420:CDS 25.0%
! GTAGGAATGATATATCTAAT+GGG - tig0026345:47191-47210 Msa1428420:CDS 25.0%
TTTGTATATTCTGTGGAAAC+CGG + tig0026345:44514-44533 Msa1428410:intron 30.0%
TTGTACGTTTGTATATTCTG+TGG + tig0026345:44521-44540 Msa1428410:intron 30.0%
AGCCTTGGATTTAAAAATGA+TGG - tig0026345:44717-44736 Msa1428420:three_prime_UTR 30.0%
GCCTTGGATTTAAAAATGAT+GGG - tig0026345:44718-44737 Msa1428420:three_prime_UTR 30.0%
CCTTGGATTTAAAAATGATG+GGG - tig0026345:44719-44738 Msa1428420:three_prime_UTR 30.0%
!! TCATGTTACTTTGTCTCTAT+TGG - tig0026345:44806-44825 Msa1428420:exon 30.0%
CTGATCAATGATCATGATTA+TGG + tig0026345:44963-44982 None:intergenic 30.0%
AAGAAGGTTTACCAATTTCA+TGG - tig0026345:45207-45226 Msa1428420:intron 30.0%
TAAAGTACGAACACCAAAAA+AGG + tig0026345:45270-45289 None:intergenic 30.0%
! TGATACTTTTGTTAATGCAG+AGG - tig0026345:45423-45442 Msa1428420:intron 30.0%
!!! GCTCTTATTTTCATGTATTC+AGG - tig0026345:45581-45600 Msa1428420:intron 30.0%
AATAAGATAATTGGATCGAC+AGG - tig0026345:45759-45778 Msa1428420:intron 30.0%
! CTGTTATAAGCCATCTTTTA+CGG - tig0026345:45827-45846 Msa1428420:intron 30.0%
TATTTATTGATATGGCAGGA+TGG - tig0026345:45947-45966 Msa1428420:intron 30.0%
ATACAATGTTGATGTCAATG+TGG - tig0026345:46033-46052 Msa1428420:intron 30.0%
!!! TCAGTTTTACTTGCTGTATA+TGG - tig0026345:46112-46131 Msa1428420:CDS 30.0%
!!! CAGTTTTACTTGCTGTATAT+GGG - tig0026345:46113-46132 Msa1428420:CDS 30.0%
! TTTTCGCTATATCTCTATTC+CGG + tig0026345:46199-46218 None:intergenic 30.0%
TTAATTATTGAGCTCTGTAG+TGG + tig0026345:46280-46299 None:intergenic 30.0%
TTGCAAACTAGGTATTATGT+GGG + tig0026345:46576-46595 None:intergenic 30.0%
! TTTATAACTGACTGGTTCAA+AGG + tig0026345:46732-46751 None:intergenic 30.0%
!!! GAGTTATTCTTTTTTGCTTG+TGG - tig0026345:46783-46802 Msa1428420:intron 30.0%
! TCATTGATTGGTTATGTTTC+AGG - tig0026345:46813-46832 Msa1428420:intron 30.0%
AGATTAATTAAGATAGGTCC+AGG - tig0026345:46901-46920 Msa1428420:intron 30.0%
ATATGTTACGTGCTTCTAAT+TGG - tig0026345:46983-47002 Msa1428420:CDS 30.0%
TTGGAGTTAGTGGTAGAAAA+AGG + tig0026345:44483-44502 Msa1428410:intron 35.0%
TTCTACCACTAACTCCAAAT+TGG - tig0026345:44485-44504 Msa1428420:three_prime_UTR 35.0%
TCTACCACTAACTCCAAATT+GGG - tig0026345:44486-44505 Msa1428420:three_prime_UTR 35.0%
!! TTTTCTAGGGAGAATTGTGA+AGG - tig0026345:44564-44583 Msa1428420:three_prime_UTR 35.0%
!! CCCCATCATTTTTAAATCCA+AGG + tig0026345:44722-44741 None:intergenic 35.0%
! ATTTAAAAATGATGGGGAGC+AGG - tig0026345:44725-44744 Msa1428420:three_prime_UTR 35.0%
! TATGAGGAGCGTATTAAGAA+AGG - tig0026345:44771-44790 Msa1428420:three_prime_UTR 35.0%
ACCTAGAACTTGTATCAGAT+TGG - tig0026345:44881-44900 Msa1428420:CDS 35.0%
TCCAATCTGATACAAGTTCT+AGG + tig0026345:44885-44904 None:intergenic 35.0%
AATCATACATGAGTATGAGC+TGG - tig0026345:44914-44933 Msa1428420:intron 35.0%
CTCCCTATACTTGGATTAAA+AGG - tig0026345:45042-45061 Msa1428420:intron 35.0%
TAAGATACGAGTGTCTAACA+AGG + tig0026345:45160-45179 None:intergenic 35.0%
!! GCAGTATTTTGAAAACTGGA+TGG + tig0026345:45234-45253 None:intergenic 35.0%
!! TGCAGTATTTCTAGTTCTTC+TGG + tig0026345:45466-45485 None:intergenic 35.0%
! ATAAGCCATCTTTTACGGAA+AGG - tig0026345:45832-45851 Msa1428420:intron 35.0%
AATTTATCCACACCTTATCC+TGG + tig0026345:45873-45892 None:intergenic 35.0%
GTCAACAGCATATGAACATA+AGG + tig0026345:45896-45915 None:intergenic 35.0%
CTATTAATAATCGCTCAGGA+AGG - tig0026345:46143-46162 Msa1428420:intron 35.0%
! GCGAAAATTTTGTTAGCCAA+TGG - tig0026345:46212-46231 Msa1428420:intron 35.0%
AAAAATATTAGATGAGGGCC+AGG - tig0026345:46372-46391 Msa1428420:intron 35.0%
TCTAATTAATTCGGCCCATT+GGG + tig0026345:46398-46417 None:intergenic 35.0%
! TCAGTACAGAACAGTTTTTC+AGG - tig0026345:46467-46486 Msa1428420:intron 35.0%
!!! TACAGAACAGTTTTTCAGGT+CGG - tig0026345:46471-46490 Msa1428420:intron 35.0%
TGCAAACTAGGTATTATGTG+GGG + tig0026345:46575-46594 None:intergenic 35.0%
GTTGCAAACTAGGTATTATG+TGG + tig0026345:46577-46596 None:intergenic 35.0%
TGTGGTAGAACTTCATTGAT+TGG - tig0026345:46801-46820 Msa1428420:intron 35.0%
! TGATTGGTTATGTTTCAGGA+CGG - tig0026345:46817-46836 Msa1428420:intron 35.0%
AGGCAACTGAGTTCTATAAT+GGG - tig0026345:46921-46940 Msa1428420:intron 35.0%
CTTCTACATCAATGATTCCT+TGG - tig0026345:47077-47096 Msa1428420:CDS 35.0%
ACTGCAAAAATGTTCTTCCA+AGG + tig0026345:47097-47116 None:intergenic 35.0%
! AGAATTGTAACAAGTTGACG+TGG - tig0026345:47232-47251 Msa1428420:CDS 35.0%
GTTGCAATCAAATCAAGCAG+AGG - tig0026345:44597-44616 Msa1428420:three_prime_UTR 40.0%
TTGCAAACCCAACAAGAACA+TGG - tig0026345:44630-44649 Msa1428420:three_prime_UTR 40.0%
TCACTGTCACTACGAATATC+TGG + tig0026345:44669-44688 None:intergenic 40.0%
GACGAAGAAGATAAAAGCCT+TGG - tig0026345:44702-44721 Msa1428420:three_prime_UTR 40.0%
CATGATATTGAAAACTGGGC+CGG - tig0026345:44840-44859 Msa1428420:CDS 40.0%
TTAGCCAACACAGAAATGTC+CGG + tig0026345:44862-44881 None:intergenic 40.0%
CCAGCTCATACTCATGATTA+TGG + tig0026345:44940-44959 None:intergenic 40.0%
CCATAATCATGAGTATGAGC+TGG - tig0026345:44937-44956 Msa1428420:intron 40.0%
GGATTACAACTCCCTATACT+TGG - tig0026345:45033-45052 Msa1428420:intron 40.0%
GAAAAAACACAACAAGGGCT+GGG + tig0026345:45105-45124 None:intergenic 40.0%
AGAAAAAACACAACAAGGGC+TGG + tig0026345:45106-45125 None:intergenic 40.0%
AACTGGATGGACCATGAAAT+TGG + tig0026345:45221-45240 None:intergenic 40.0%
CAAATGCAGATAAGAACGCA+AGG + tig0026345:45560-45579 None:intergenic 40.0%
ATGGACAAGCTTCTTGAAAG+TGG - tig0026345:45654-45673 Msa1428420:intron 40.0%
AGATAATTGGATCGACAGGA+AGG - tig0026345:45763-45782 Msa1428420:intron 40.0%
TTGCACCTTTCCGTAAAAGA+TGG + tig0026345:45840-45859 None:intergenic 40.0%
ACTTGAACGGCATAATGAAG+CGG + tig0026345:45980-45999 None:intergenic 40.0%
CTTCATTATGCCGTTCAAGT+TGG - tig0026345:45980-45999 Msa1428420:intron 40.0%
TTGCTTTGCACCAACTTGAA+CGG + tig0026345:45993-46012 None:intergenic 40.0%
TAATAATCGCTCAGGAAGGT+TGG - tig0026345:46147-46166 Msa1428420:intron 40.0%
TTTGAACGGCAACATGCAAT+GGG + tig0026345:46175-46194 None:intergenic 40.0%
!! ATCTCTATTCCGGCTTTGAA+CGG + tig0026345:46189-46208 None:intergenic 40.0%
GTCTAATTAATTCGGCCCAT+TGG + tig0026345:46399-46418 None:intergenic 40.0%
!! AAGCTGTTTTGAGCTCGTTT+CGG - tig0026345:46545-46564 Msa1428420:intron 40.0%
! TGGTTTGCATGCTAGTGAAT+AGG - tig0026345:46759-46778 Msa1428420:intron 40.0%
GGTTTGCATGCTAGTGAATA+GGG - tig0026345:46760-46779 Msa1428420:intron 40.0%
GTTTGCATGCTAGTGAATAG+GGG - tig0026345:46761-46780 Msa1428420:intron 40.0%
! GATTGGTTATGTTTCAGGAC+GGG - tig0026345:46818-46837 Msa1428420:intron 40.0%
CATTATAGAACTCAGTTGCC+TGG + tig0026345:46922-46941 None:intergenic 40.0%
CAGGCAACTGAGTTCTATAA+TGG - tig0026345:46920-46939 Msa1428420:intron 40.0%
ACTAACTCCAAATTGGGAGC+CGG - tig0026345:44492-44511 Msa1428420:three_prime_UTR 45.0%
CTAGGGAGAATTGTGAAGGT+TGG - tig0026345:44568-44587 Msa1428420:three_prime_UTR 45.0%
CCAGGTTCCATGTTCTTGTT+GGG + tig0026345:44640-44659 None:intergenic 45.0%
CCAACAAGAACATGGAACCT+GGG - tig0026345:44638-44657 Msa1428420:three_prime_UTR 45.0%
!! ACGAATATCTGGTTCTTCCC+AGG + tig0026345:44658-44677 None:intergenic 45.0%
AGATAAGAACGCAAGGCTCT+AGG + tig0026345:45553-45572 None:intergenic 45.0%
AGGTCTCACTGCACTTCATA+AGG - tig0026345:45783-45802 Msa1428420:intron 45.0%
TCTCACTGCACTTCATAAGG+CGG - tig0026345:45786-45805 Msa1428420:intron 45.0%
GCACTTCATAAGGCGGTTAT+AGG - tig0026345:45793-45812 Msa1428420:intron 45.0%
AAGTCCTCATGTCCAGGATA+AGG - tig0026345:45858-45877 Msa1428420:intron 45.0%
TTGAACGGCAACATGCAATG+GGG + tig0026345:46174-46193 None:intergenic 45.0%
CTTTGAACGGCAACATGCAA+TGG + tig0026345:46176-46195 None:intergenic 45.0%
TATCGATCTATCTGCGCCAT+TGG + tig0026345:46231-46250 None:intergenic 45.0%
!!! GTTTTTCAGGTCGGTATCAG+TGG - tig0026345:46480-46499 Msa1428420:intron 45.0%
! GACTGGTTCAAAGGCATGTA+GGG + tig0026345:46723-46742 None:intergenic 45.0%
! TGACTGGTTCAAAGGCATGT+AGG + tig0026345:46724-46743 None:intergenic 45.0%
!! ACTGAGTTCTATAATGGGCG+AGG - tig0026345:46926-46945 Msa1428420:intron 45.0%
! GGCTCCCAATTTGGAGTTAG+TGG + tig0026345:44493-44512 Msa1428410:intron 50.0%
CCCAACAAGAACATGGAACC+TGG - tig0026345:44637-44656 Msa1428420:three_prime_UTR 50.0%
CCCAGGTTCCATGTTCTTGT+TGG + tig0026345:44641-44660 None:intergenic 50.0%
! ATAAGCCAAGAGAGTGCAGC+GGG + tig0026345:45617-45636 None:intergenic 50.0%
! GATAAGCCAAGAGAGTGCAG+CGG + tig0026345:45618-45637 None:intergenic 50.0%
CACACCTTATCCTGGACATG+AGG + tig0026345:45865-45884 None:intergenic 50.0%
CTCATGTCCAGGATAAGGTG+TGG - tig0026345:45863-45882 Msa1428420:CDS 50.0%
TGCATGTTGCCGTTCAAAGC+CGG - tig0026345:46177-46196 Msa1428420:intron 50.0%
! GTGGAAACCGGCTCCCAATT+TGG + tig0026345:44502-44521 Msa1428410:intron 55.0%
AGAGACGCAGGACGAGTATG+AGG - tig0026345:44755-44774 Msa1428420:three_prime_UTR 55.0%
TGGGCCGGACATTTCTGTGT+TGG - tig0026345:44855-44874 Msa1428420:CDS 55.0%
AGGTGCAAGTCCTCATGTCC+AGG - tig0026345:45852-45871 Msa1428420:intron 55.0%
TTAATTCGGCCCATTGGGCC+TGG + tig0026345:46393-46412 None:intergenic 55.0%
TCAGGACGGGAAAACAGCAC+TGG - tig0026345:46831-46850 Msa1428420:intron 55.0%
GCAGGAAGAGACAGAGACGC+AGG - tig0026345:44743-44762 Msa1428420:three_prime_UTR 60.0%
TAGATGAGGGCCAGGCCCAA+TGG - tig0026345:46380-46399 Msa1428420:intron 60.0%
AGATGAGGGCCAGGCCCAAT+GGG - tig0026345:46381-46400 Msa1428420:intron 60.0%
TGGAGCCCGCTGCACTCTCT+TGG - tig0026345:45609-45628 Msa1428420:intron 65.0%
Chromosome Type Strat End Strand Name
tig0026345 gene 44402 47336 44402 ID=Msa1428420;Name=Msa1428420
tig0026345 mRNA 44402 47336 44402 ID=Msa1428420-mRNA-1;Parent=Msa1428420;Name=Msa1428420-mRNA-1;_AED=0.11;_eAED=0.11;_QI=33|1|1|1|1|1|7|406|309
tig0026345 exon 44402 44903 44402 ID=Msa1428420-mRNA-1:exon:5969;Parent=Msa1428420-mRNA-1
tig0026345 exon 45479 45577 45479 ID=Msa1428420-mRNA-1:exon:5968;Parent=Msa1428420-mRNA-1
tig0026345 exon 45675 45773 45675 ID=Msa1428420-mRNA-1:exon:5967;Parent=Msa1428420-mRNA-1
tig0026345 exon 45859 45957 45859 ID=Msa1428420-mRNA-1:exon:5966;Parent=Msa1428420-mRNA-1
tig0026345 exon 46037 46135 46037 ID=Msa1428420-mRNA-1:exon:5965;Parent=Msa1428420-mRNA-1
tig0026345 exon 46216 46295 46216 ID=Msa1428420-mRNA-1:exon:5964;Parent=Msa1428420-mRNA-1
tig0026345 exon 46946 47336 46946 ID=Msa1428420-mRNA-1:exon:5963;Parent=Msa1428420-mRNA-1
tig0026345 five_prime_UTR 47304 47336 47304 ID=Msa1428420-mRNA-1:five_prime_utr;Parent=Msa1428420-mRNA-1
tig0026345 CDS 46946 47303 46946 ID=Msa1428420-mRNA-1:cds;Parent=Msa1428420-mRNA-1
tig0026345 CDS 46216 46295 46216 ID=Msa1428420-mRNA-1:cds;Parent=Msa1428420-mRNA-1
tig0026345 CDS 46037 46135 46037 ID=Msa1428420-mRNA-1:cds;Parent=Msa1428420-mRNA-1
tig0026345 CDS 45859 45957 45859 ID=Msa1428420-mRNA-1:cds;Parent=Msa1428420-mRNA-1
tig0026345 CDS 45675 45773 45675 ID=Msa1428420-mRNA-1:cds;Parent=Msa1428420-mRNA-1
tig0026345 CDS 45479 45577 45479 ID=Msa1428420-mRNA-1:cds;Parent=Msa1428420-mRNA-1
tig0026345 CDS 44808 44903 44808 ID=Msa1428420-mRNA-1:cds;Parent=Msa1428420-mRNA-1
tig0026345 three_prime_UTR 44402 44807 44402 ID=Msa1428420-mRNA-1:three_prime_utr;Parent=Msa1428420-mRNA-1
Gene Sequence

>Msa1428420

ATGGATTGTTTGGCTACATCACCTGTTCTTTCTAATAAATTTATTCCTTTTTCTACCACTAACTCCAAATTGGGAGCCGGTTTCCACAGAATATACAAACGTACAACCAAACAAAAATTATGTCTCTCTTTTTCTAGGGAGAATTGTGAAGGTTGGAGAAATGTTGCAATCAAATCAAGCAGAGGAGTATCTTCTTTGCAAACCCAACAAGAACATGGAACCTGGGAAGAACCAGATATTCGTAGTGACAGTGACGATGAGTATGCTGACGAAGAAGATAAAAGCCTTGGATTTAAAAATGATGGGGAGCAGGAAGAGACAGAGACGCAGGACGAGTATGAGGAGCGTATTAAGAAAGAGGTTGAACGACTTTTAAAACCAGAAGAACTAGAAATACTGCAACAGAATATAACTCCTAATTTGGAAAAAATATCATCTGAAAAATGGAGCCCGCTGCACTCTCTTGGCTTATCATTTCAGATTTTTAGTATGGACAAGCTTCTTGAAAGTGGTCATGATATTGATTTCGTCAATAAGGAAGGTCTCACTGCACTTCATAAGGCGGTTATAGGTAAAAAAGAAGCTGTTATAAGCCATCTTTTACGGAAAGGTGCAAGTCCTCATGTCCAGGATAAGGATGGAGCTACTCCGCTTCATTATGCCGTTCAAGTTGGTGCAAAGCAAACTGTGAAATTATTGATCAAATACAATGTTGATGTCAATGTGGCAGATAATGAAGGTTGGACCCCATTGCATGTTGCCGTTCAAAGCCGGAATAGAGATATAGCGAAAATTTTGTTAGCCAATGGCGCAGATAGATCGATAGAAAATAAGGACGGGAAAACAGCACTGGATATAAGTATATGTTATGGAAAAGACTTCATGTCTTATGACCTTGCTAGATTAATTAAGATAGGTCCAGGCAACTGA

Protein sequence

>Msa1428420

MDCLATSPVLSNKFIPFSTTNSKLGAGFHRIYKRTTKQKLCLSFSRENCEGWRNVAIKSSRGVSSLQTQQEHGTWEEPDIRSDSDDEYADEEDKSLGFKNDGEQEETETQDEYEERIKKEVERLLKPEELEILQQNITPNLEKISSEKWSPLHSLGLSFQIFSMDKLLESGHDIDFVNKEGLTALHKAVIGKKEAVISHLLRKGASPHVQDKDGATPLHYAVQVGAKQTVKLLIKYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLANGADRSIENKDGKTALDISICYGKDFMSYDLARLIKIGPGN*