Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105480 | sp|F4INA9|RECG_ARATH | 63.805 | 431 | 123 | 1 | 1 | 431 | 576 | 973 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105480 | A0A2K3NQ85 | 83.929 | 448 | 49 | 4 | 1 | 430 | 100 | 542 | 0.0 | 723 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011920 | Msa0105480 | 0.902709 | 7.342121e-79 | -8.615850e-47 |
| Msa0016710 | Msa0105480 | -0.815429 | 9.286777e-52 | -8.615850e-47 |
| Msa0037180 | Msa0105480 | -0.813192 | 2.898228e-51 | -8.615850e-47 |
| Msa0044720 | Msa0105480 | -0.805729 | 1.159928e-49 | -8.615850e-47 |
| Msa0081610 | Msa0105480 | 0.807759 | 4.320486e-50 | -8.615850e-47 |
| Msa0092220 | Msa0105480 | -0.801084 | 1.063920e-48 | -8.615850e-47 |
| Msa0103830 | Msa0105480 | -0.805060 | 1.601786e-49 | -8.615850e-47 |
| Msa0105480 | Msa0145430 | -0.801844 | 7.432990e-49 | -8.615850e-47 |
| Msa0105480 | Msa0150330 | -0.811234 | 7.752943e-51 | -8.615850e-47 |
| Msa0105480 | Msa0173950 | 0.815744 | 7.902231e-52 | -8.615850e-47 |
| Msa0105480 | Msa0174060 | 0.806280 | 8.879669e-50 | -8.615850e-47 |
| Msa0105480 | Msa0177320 | -0.823652 | 1.234224e-53 | -8.615850e-47 |
| Msa0105480 | Msa0220990 | -0.809370 | 1.957039e-50 | -8.615850e-47 |
| Msa0105480 | Msa0262440 | -0.805381 | 1.372119e-49 | -8.615850e-47 |
| Msa0105480 | Msa0334450 | 0.811335 | 7.372308e-51 | -8.615850e-47 |
| Msa0105480 | Msa0458220 | -0.802893 | 4.518479e-49 | -8.615850e-47 |
| Msa0105480 | Msa0474570 | -0.801838 | 7.452921e-49 | -8.615850e-47 |
| Msa0105480 | Msa0504700 | -0.807120 | 5.903687e-50 | -8.615850e-47 |
| Msa0105480 | Msa0560460 | -0.805668 | 1.194331e-49 | -8.615850e-47 |
| Msa0105480 | Msa0563440 | -0.803615 | 3.202893e-49 | -8.615850e-47 |
| Msa0105480 | Msa0616580 | -0.805254 | 1.458840e-49 | -8.615850e-47 |
| Msa0105480 | Msa0621670 | 0.808005 | 3.830922e-50 | -8.615850e-47 |
| Msa0105480 | Msa0639110 | -0.812835 | 3.471796e-51 | -8.615850e-47 |
| Msa0105480 | Msa0639530 | 0.827388 | 1.608548e-54 | -8.615850e-47 |
| Msa0105480 | Msa1236190 | 0.801820 | 7.518780e-49 | -8.615850e-47 |
| Msa0105480 | Msa1377980 | 0.801657 | 8.119870e-49 | -8.615850e-47 |
| Msa0105480 | Msa1453430 | -0.812429 | 4.258586e-51 | -8.615850e-47 |
| Msa0105480 | Msa1456180 | 0.806764 | 7.020379e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105480 | MtrunA17_Chr1g0160491 | 89.327 | 431 | 13 | 1 | 1 | 431 | 619 | 1016 | 0.0 | 771 |
| Msa0105480 | MtrunA17_Chr3g0119091 | 94.979 | 239 | 12 | 0 | 182 | 420 | 8 | 246 | 2.21e-166 | 467 |
| Msa0105480 | MtrunA17_Chr3g0119101 | 93.960 | 149 | 9 | 0 | 1 | 149 | 34 | 182 | 1.29e-95 | 285 |
| Msa0105480 | MtrunA17_Chr7g0252461 | 30.052 | 386 | 186 | 9 | 1 | 376 | 326 | 637 | 8.95e-44 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0105480 | AT2G01440.1 | 63.805 | 431 | 123 | 1 | 1 | 431 | 576 | 973 | 0.0 | 560 |
| Msa0105480 | AT3G02060.2 | 30.238 | 420 | 208 | 10 | 1 | 410 | 324 | 668 | 3.01e-45 | 168 |
| Msa0105480 | AT3G02060.1 | 30.238 | 420 | 208 | 10 | 1 | 410 | 325 | 669 | 3.29e-45 | 168 |
| Msa0105480 | AT3G02060.3 | 30.238 | 420 | 208 | 10 | 1 | 410 | 325 | 669 | 3.29e-45 | 168 |
Find 132 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCCTGAGTTGGTGTAAT+TGG | 0.159367 | 1_3:-14015555 | None:intergenic |
| TGCTCTGAAAGTTCGATAAT+TGG | 0.181246 | 1_3:-14015295 | None:intergenic |
| ACCCTTGCGCTTGCTTTATA+TGG | 0.228107 | 1_3:+14012736 | Msa0105480:CDS |
| CCTTACAAAACCGGTTTATA+AGG | 0.228718 | 1_3:+14013976 | Msa0105480:CDS |
| GCCACTCAAGTAATTGAAAT+TGG | 0.233843 | 1_3:+14015472 | Msa0105480:CDS |
| TGGGTTTCATCTTGCTAATA+TGG | 0.287027 | 1_3:+14015672 | Msa0105480:CDS |
| GCAATTTCCTGCACTTAAAC+TGG | 0.298836 | 1_3:+14016534 | Msa0105480:CDS |
| CTCAAAGACTGATGATTATA+TGG | 0.304409 | 1_3:+14012672 | Msa0105480:CDS |
| TGCAGACAGCGTTGAATTCT+CGG | 0.309005 | 1_3:+14011266 | Msa0105480:CDS |
| TCGACTTCCAATCTGGTAAT+AGG | 0.310055 | 1_3:-14015760 | None:intergenic |
| AAGAAACGTTAGGGAAGTTT+AGG | 0.311725 | 1_3:+14015425 | Msa0105480:CDS |
| GTTATCTCAGACCGGTTTCC+AGG | 0.312908 | 1_3:+14015355 | Msa0105480:CDS |
| TAAATCTTCAATTTCGAGTC+TGG | 0.326921 | 1_3:+14012627 | Msa0105480:CDS |
| GATACTCGTGTGTAACTATT+AGG | 0.327075 | 1_3:+14010943 | Msa0105480:five_prime_UTR |
| GCTTGCGTTGCTTGAAAACT+TGG | 0.369982 | 1_3:+14011018 | Msa0105480:CDS |
| TAGTTTGACAGGCTCTTCTT+TGG | 0.382831 | 1_3:+14016666 | Msa0105480:three_prime_UTR |
| CGATTGAAATTTCTCCGGTC+TGG | 0.391448 | 1_3:-14011221 | None:intergenic |
| TAACTATTAGGCGGCTTTCA+TGG | 0.392265 | 1_3:+14010955 | Msa0105480:exon |
| AAAGCAAGCGCAAGGGTCCT+TGG | 0.393595 | 1_3:-14012730 | None:intergenic |
| CGAGTTTCCTATTACCAGAT+TGG | 0.393606 | 1_3:+14015753 | Msa0105480:CDS |
| GCCCCTGAGTTGGTGTAATT+GGG | 0.399144 | 1_3:-14015554 | None:intergenic |
| CAAGCAAGTGTTTATAATGC+TGG | 0.403142 | 1_3:-14011000 | None:intergenic |
| GGAGAAATTTCAATCGTCAT+TGG | 0.404798 | 1_3:+14011228 | Msa0105480:CDS |
| CATATAATCATCAGTCTTTG+AGG | 0.409324 | 1_3:-14012671 | None:intergenic |
| GTTTGAACAGGAATCCTTCC+TGG | 0.409760 | 1_3:-14014446 | None:intergenic |
| TAACTCAACCCTTACAAAAC+CGG | 0.413723 | 1_3:+14013967 | Msa0105480:CDS |
| ATATAAAATTGTCACCTTGT+AGG | 0.418463 | 1_3:-14014507 | None:intergenic |
| CCTTCATCGTTTGAAAGTAC+TGG | 0.419728 | 1_3:+14015636 | Msa0105480:CDS |
| GTAGTCATGAATTAGCCTTT+AGG | 0.421104 | 1_3:+14016693 | Msa0105480:three_prime_UTR |
| CAGGAAATTGCTCCAGATCA+TGG | 0.427300 | 1_3:-14016522 | None:intergenic |
| CACCAGGTCCACGTAATAAT+AGG | 0.429367 | 1_3:-14015696 | None:intergenic |
| CTTAAGTGCTTCCCATGATC+TGG | 0.430962 | 1_3:+14016510 | Msa0105480:CDS |
| TGTAATGTAAATAGTTTGAC+AGG | 0.439782 | 1_3:+14016655 | Msa0105480:three_prime_UTR |
| TGATGGATGAGTTGGAAGAT+GGG | 0.443050 | 1_3:+14015251 | Msa0105480:CDS |
| ACAACCATCATCGATGCATC+TGG | 0.444936 | 1_3:-14015505 | None:intergenic |
| GCTCTGAAAGTTCGATAATT+GGG | 0.448698 | 1_3:-14015294 | None:intergenic |
| AGACAGCCGCTTTGCCTGCT+AGG | 0.450136 | 1_3:+14016568 | Msa0105480:CDS |
| TACAATTGTGGTTTATTACA+TGG | 0.458064 | 1_3:+14015379 | Msa0105480:CDS |
| CACAATTGTATCCTGGAAAC+CGG | 0.460527 | 1_3:-14015366 | None:intergenic |
| TTGCTTGGCAAGAAACAATC+TGG | 0.461165 | 1_3:+14015721 | Msa0105480:CDS |
| ATGATGGATGAGTTGGAAGA+TGG | 0.462197 | 1_3:+14015250 | Msa0105480:CDS |
| GTCCAACTCGGCCCCTGAGT+TGG | 0.463318 | 1_3:-14015564 | None:intergenic |
| GCAATCCTCACCTTATAAAC+CGG | 0.468927 | 1_3:-14013986 | None:intergenic |
| AAGAGGAAGATTTAACAGTA+AGG | 0.469294 | 1_3:+14011338 | Msa0105480:CDS |
| TCGATGGTATATGTTTGAAC+AGG | 0.470456 | 1_3:-14014458 | None:intergenic |
| ATTGCCGTCGACTTCCAATC+TGG | 0.478317 | 1_3:-14015767 | None:intergenic |
| TGGAAACGGCAGCGGAATAG+TGG | 0.480959 | 1_3:+14013887 | Msa0105480:intron |
| CCAACTGTTGCTTTACTCAC+TGG | 0.482345 | 1_3:+14011058 | Msa0105480:CDS |
| AAGCAAGCGCAAGGGTCCTT+GGG | 0.483118 | 1_3:-14012729 | None:intergenic |
| CGTGGACCTGGTGACTTGCT+TGG | 0.483435 | 1_3:+14015706 | Msa0105480:CDS |
| AGCGCAAGGGTCCTTGGGAT+GGG | 0.485659 | 1_3:-14012724 | None:intergenic |
| CAATCTGGTAATAGGAAACT+CGG | 0.485660 | 1_3:-14015752 | None:intergenic |
| AAATTCTAAGATGTAGAGTC+TGG | 0.488021 | 1_3:-14013934 | None:intergenic |
| AAGCGCAAGGGTCCTTGGGA+TGG | 0.488030 | 1_3:-14012725 | None:intergenic |
| ACCAATTTCAATTACTTGAG+TGG | 0.489380 | 1_3:-14015473 | None:intergenic |
| TCCTTTGTCACTTCCCTCGA+TGG | 0.489814 | 1_3:-14014474 | None:intergenic |
| CGCTGTCTGCAAACAAACTG+TGG | 0.492730 | 1_3:-14011254 | None:intergenic |
| AGAGTCTGGTTTGATCCTCC+TGG | 0.492792 | 1_3:-14013920 | None:intergenic |
| GGGAAGTGACAAAGGATTTG+AGG | 0.495742 | 1_3:+14014481 | Msa0105480:CDS |
| TTTCATGGTTCCAACTGAGT+TGG | 0.497308 | 1_3:+14010970 | Msa0105480:exon |
| GTGATGAATTCTGAGAGGTT+TGG | 0.497651 | 1_3:+14015526 | Msa0105480:CDS |
| AGACGCACATGTTGCTGCAC+TGG | 0.511644 | 1_3:+14015798 | Msa0105480:CDS |
| AATGACGATTGAAATTTCTC+CGG | 0.513924 | 1_3:-14011226 | None:intergenic |
| CCAGATGATGATGGATGAGT+TGG | 0.516635 | 1_3:+14015243 | Msa0105480:intron |
| CACCAACTCAGGGGCCGAGT+TGG | 0.517789 | 1_3:+14015562 | Msa0105480:CDS |
| CCTGCACTTAAACTGGAGCT+TGG | 0.519333 | 1_3:+14016541 | Msa0105480:CDS |
| AATAAACCACAATTGTATCC+TGG | 0.525067 | 1_3:-14015373 | None:intergenic |
| GCCTTGTTCCGCGTCCAACT+CGG | 0.525727 | 1_3:-14015576 | None:intergenic |
| TGGCCCAATTACACCAACTC+AGG | 0.527566 | 1_3:+14015551 | Msa0105480:CDS |
| CGCTTTGGTGTGATTCAAAG+AGG | 0.530319 | 1_3:+14011321 | Msa0105480:CDS |
| ACTTATAAACATCAGCCTAA+AGG | 0.533109 | 1_3:-14016708 | None:intergenic |
| TTCTTGCCAAGCAAGTCACC+AGG | 0.535464 | 1_3:-14015712 | None:intergenic |
| ACAATTGTGGTTTATTACAT+GGG | 0.540012 | 1_3:+14015380 | Msa0105480:CDS |
| CAGATAACCGACTTACCACC+AGG | 0.541332 | 1_3:+14014428 | Msa0105480:intron |
| AGGAAATTGCTCCAGATCAT+GGG | 0.542959 | 1_3:-14016521 | None:intergenic |
| AGGATTTGAGGATGCCTACA+AGG | 0.545223 | 1_3:+14014493 | Msa0105480:CDS |
| CTCGGCCTTACGTATTGCTG+TGG | 0.546224 | 1_3:+14011284 | Msa0105480:CDS |
| GACTTGATCAATCACCTAGC+AGG | 0.546791 | 1_3:-14016582 | None:intergenic |
| GTGGATGAGCAGCATCGCTT+TGG | 0.547311 | 1_3:+14011306 | Msa0105480:CDS |
| AACGGCAGCGGAATAGTGGC+AGG | 0.549213 | 1_3:+14013891 | Msa0105480:intron |
| ATCTCAAAGTTATCTCAGAC+CGG | 0.549467 | 1_3:+14015347 | Msa0105480:CDS |
| CGGTTTCCAGGATACAATTG+TGG | 0.550814 | 1_3:+14015367 | Msa0105480:CDS |
| CACCATATAAAGCAAGCGCA+AGG | 0.551892 | 1_3:-14012738 | None:intergenic |
| CTCAGGGGCCGAGTTGGACG+CGG | 0.553537 | 1_3:+14015568 | Msa0105480:CDS |
| CCAAGCTCCAGTTTAAGTGC+AGG | 0.555098 | 1_3:-14016541 | None:intergenic |
| ATGTTGCAGGGTATCCAGAC+CGG | 0.555872 | 1_3:+14011207 | Msa0105480:intron |
| TGTTCCAGATGCATCGATGA+TGG | 0.557877 | 1_3:+14015501 | Msa0105480:CDS |
| GGCCTTACGTATTGCTGTGG+TGG | 0.559193 | 1_3:+14011287 | Msa0105480:CDS |
| AATAGTGGCAGGACATGTCC+AGG | 0.562676 | 1_3:+14013902 | Msa0105480:CDS |
| GTTTATAAGTTGATCGAACA+AGG | 0.562817 | 1_3:+14016721 | Msa0105480:three_prime_UTR |
| ACGTTAGGGAAGTTTAGGAC+TGG | 0.563325 | 1_3:+14015430 | Msa0105480:CDS |
| CCAGTACTTTCAAACGATGA+AGG | 0.564004 | 1_3:-14015636 | None:intergenic |
| GCCGAGTTGGACGCGGAACA+AGG | 0.565761 | 1_3:+14015575 | Msa0105480:CDS |
| GATGGATGAGTTGGAAGATG+GGG | 0.572787 | 1_3:+14015252 | Msa0105480:CDS |
| CAAAATTATCACAATGAACA+AGG | 0.579586 | 1_3:-14016634 | None:intergenic |
| TACTGGAGCAATCATCAGAT+GGG | 0.589389 | 1_3:+14015653 | Msa0105480:CDS |
| GCAGAAGCAGCACGAAGCAG+AGG | 0.593130 | 1_3:-14015322 | None:intergenic |
| ATCTTCAATTTCGAGTCTGG+AGG | 0.595795 | 1_3:+14012630 | Msa0105480:CDS |
| GCAGACATGGCAAGAACATG+TGG | 0.598690 | 1_3:-14012697 | None:intergenic |
| GGCCCAATTACACCAACTCA+GGG | 0.604595 | 1_3:+14015552 | Msa0105480:CDS |
| GTACTGGAGCAATCATCAGA+TGG | 0.606977 | 1_3:+14015652 | Msa0105480:CDS |
| ACCATATAAAGCAAGCGCAA+GGG | 0.608898 | 1_3:-14012737 | None:intergenic |
| ACAAGCGCGGATTATTCGCA+AGG | 0.610496 | 1_3:+14011096 | Msa0105480:CDS |
| GTTCAAACATATACCATCGA+GGG | 0.613078 | 1_3:+14014461 | Msa0105480:CDS |
| ATCCACCACAGCAATACGTA+AGG | 0.613184 | 1_3:-14011289 | None:intergenic |
| ACCATCGAGGGAAGTGACAA+AGG | 0.613822 | 1_3:+14014473 | Msa0105480:CDS |
| CCAGTGAGTAAAGCAACAGT+TGG | 0.614716 | 1_3:-14011058 | None:intergenic |
| TGGATTGCAACCAACTCAGT+TGG | 0.614757 | 1_3:-14010980 | None:intergenic |
| AATCTGGTAATAGGAAACTC+GGG | 0.616903 | 1_3:-14015751 | None:intergenic |
| AATCCTTCCTGGTGGTAAGT+CGG | 0.617389 | 1_3:-14014435 | None:intergenic |
| ATGGATGAGTTGGAAGATGG+GGG | 0.618804 | 1_3:+14015253 | Msa0105480:CDS |
| GTTGCTTGAAAACTTGGACG+AGG | 0.619505 | 1_3:+14011024 | Msa0105480:CDS |
| GCTGTCTGCAAACAAACTGT+GGG | 0.622441 | 1_3:-14011253 | None:intergenic |
| TGGGATGGGAGTAGCAGACA+TGG | 0.625483 | 1_3:-14012710 | None:intergenic |
| TGGTGATATGTCACTGACAC+AGG | 0.629735 | 1_3:+14012756 | Msa0105480:CDS |
| GACCTATTATTACGTGGACC+TGG | 0.631359 | 1_3:+14015694 | Msa0105480:CDS |
| GAATTCTGAGAGGTTTGGAA+TGG | 0.632033 | 1_3:+14015531 | Msa0105480:CDS |
| TTTCAAACGATGAAGGCCAC+TGG | 0.635677 | 1_3:-14015629 | None:intergenic |
| ATTACCAGATTGGAAGTCGA+CGG | 0.641804 | 1_3:+14015763 | Msa0105480:CDS |
| TTAATATCATCAACTGCCAG+TGG | 0.651291 | 1_3:+14015613 | Msa0105480:CDS |
| TGTCTGCTACTCCCATCCCA+AGG | 0.667833 | 1_3:+14012713 | Msa0105480:CDS |
| TAACCGACTTACCACCAGGA+AGG | 0.674759 | 1_3:+14014432 | Msa0105480:CDS |
| AATATGGACCTATTATTACG+TGG | 0.675630 | 1_3:+14015688 | Msa0105480:CDS |
| ACTCGTGTGTAACTATTAGG+CGG | 0.691711 | 1_3:+14010946 | Msa0105480:five_prime_UTR |
| CAATCACCTAGCAGGCAAAG+CGG | 0.695432 | 1_3:-14016574 | None:intergenic |
| TGAACAGGAATCCTTCCTGG+TGG | 0.697461 | 1_3:-14014443 | None:intergenic |
| CAACCCCACTAAAACAAGCG+CGG | 0.702736 | 1_3:+14011083 | Msa0105480:CDS |
| TGATTGATCAAGTCTTGATG+TGG | 0.713708 | 1_3:+14016591 | Msa0105480:exon |
| TGTTCAAACATATACCATCG+AGG | 0.717968 | 1_3:+14014460 | Msa0105480:CDS |
| TGGTTGTGATGAATTCTGAG+AGG | 0.736566 | 1_3:+14015521 | Msa0105480:CDS |
| GCCCAATTACACCAACTCAG+GGG | 0.737840 | 1_3:+14015553 | Msa0105480:CDS |
| AGTGGCAGGACATGTCCAGG+AGG | 0.751450 | 1_3:+14013905 | Msa0105480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTATAAGAATTTCATA+GGG | - | chr1_3:14011175-14011194 | None:intergenic | 10.0% |
| !! | TAAAATTATAAGAATTTCAT+AGG | - | chr1_3:14011176-14011195 | None:intergenic | 10.0% |
| !!! | ATTTTAATATAGTTACATTA+TGG | + | chr1_3:14011384-14011403 | Msa0105480:intron | 10.0% |
| !!! | TAATTAATGACTTTTTTATT+TGG | - | chr1_3:14014148-14014167 | None:intergenic | 10.0% |
| !!! | TGGTTTTTATTATTTATTTA+AGG | - | chr1_3:14014183-14014202 | None:intergenic | 10.0% |
| !!! | GGATTTTTTTTATTTTTTTT+GGG | - | chr1_3:14015936-14015955 | None:intergenic | 10.0% |
| !!! | AGGATTTTTTTTATTTTTTT+TGG | - | chr1_3:14015937-14015956 | None:intergenic | 10.0% |
| !! | AAATAAAAATAGCCAAAATA+AGG | - | chr1_3:14012382-14012401 | None:intergenic | 15.0% |
| !! | ATAAAATAACTGAGAAAATA+AGG | - | chr1_3:14012608-14012627 | None:intergenic | 15.0% |
| !! | AATGAGATATGAAATAAATA+AGG | + | chr1_3:14013539-14013558 | Msa0105480:intron | 15.0% |
| !! | TATAGTTGTATACTAATATT+TGG | - | chr1_3:14013823-14013842 | None:intergenic | 15.0% |
| !! | AAAATCATAAATTATATGTC+AGG | - | chr1_3:14014262-14014281 | None:intergenic | 15.0% |
| !!! | AATTTTGTAAAGAATTTTTG+TGG | + | chr1_3:14014314-14014333 | Msa0105480:intron | 15.0% |
| !! | AAATGCAAACAATATATTTA+GGG | - | chr1_3:14016048-14016067 | None:intergenic | 15.0% |
| !! | AATATATCAACTAATAAAGT+TGG | - | chr1_3:14016122-14016141 | None:intergenic | 15.0% |
| !!! | TTATTAGTTGATATATTGTT+AGG | + | chr1_3:14016125-14016144 | Msa0105480:intron | 15.0% |
| !!! | TATTAGTTGATATATTGTTA+GGG | + | chr1_3:14016126-14016145 | Msa0105480:intron | 15.0% |
| !! | TATATTAACAGGTAAAAAAA+AGG | - | chr1_3:14016766-14016785 | None:intergenic | 15.0% |
| !!! | AAGTCAAATTTTATATTAAC+AGG | - | chr1_3:14016777-14016796 | None:intergenic | 15.0% |
| !!! | ATTTGATAGTTGTATTTGAA+AGG | - | chr1_3:14012338-14012357 | None:intergenic | 20.0% |
| !! | AAATTGTAACTAAAGAAGTT+AGG | - | chr1_3:14012417-14012436 | None:intergenic | 20.0% |
| !! | TAAAATAAAAAACGCAATGA+AGG | - | chr1_3:14012545-14012564 | None:intergenic | 20.0% |
| !! | TTAAACTTATTCAAGCAAAA+GGG | - | chr1_3:14012842-14012861 | None:intergenic | 20.0% |
| !! | TTTAAACTTATTCAAGCAAA+AGG | - | chr1_3:14012843-14012862 | None:intergenic | 20.0% |
| !! | AATCAAACCATCTTAAAATT+TGG | - | chr1_3:14013200-14013219 | None:intergenic | 20.0% |
| !!! | AATTTTAAGATGGTTTGATT+TGG | + | chr1_3:14013200-14013219 | Msa0105480:intron | 20.0% |
| !! | TAAATAACTAAGGGTAATAT+TGG | - | chr1_3:14013497-14013516 | None:intergenic | 20.0% |
| !! | CAAAAAAGTGACAATTAAAA+CGG | + | chr1_3:14013637-14013656 | Msa0105480:intron | 20.0% |
| !! | TTAGTATACAACTATAAGAA+TGG | + | chr1_3:14013827-14013846 | Msa0105480:intron | 20.0% |
| !! | TTAGTATACAACTATAAGAA+TGG | + | chr1_3:14013827-14013846 | Msa0105480:intron | 20.0% |
| !!! | TAAGAATGGTCATAATTTTT+TGG | + | chr1_3:14013867-14013886 | Msa0105480:intron | 20.0% |
| !! | AATAAATAATAAAAACCAGC+TGG | + | chr1_3:14014185-14014204 | Msa0105480:intron | 20.0% |
| !! | TCATCTCAAGTATATATTAA+TGG | - | chr1_3:14014656-14014675 | None:intergenic | 20.0% |
| !! | ATACTATATTTATAGTGAGT+AGG | - | chr1_3:14014820-14014839 | None:intergenic | 20.0% |
| !!! | TATTGATAGCTCTAATATAA+AGG | + | chr1_3:14014931-14014950 | Msa0105480:intron | 20.0% |
| !! | AAATATATAATTCCCTGATT+GGG | - | chr1_3:14014991-14015010 | None:intergenic | 20.0% |
| !! | AAAATATATAATTCCCTGAT+TGG | - | chr1_3:14014992-14015011 | None:intergenic | 20.0% |
| !! | AGAGTATGATTGTAAAATAA+CGG | - | chr1_3:14015107-14015126 | None:intergenic | 20.0% |
| !!! | ACAATTTTACATCAATACAT+GGG | - | chr1_3:14015214-14015233 | None:intergenic | 20.0% |
| !!! | ATGTATTGATGTAAAATTGT+GGG | + | chr1_3:14015214-14015233 | Msa0105480:intron | 20.0% |
| !! | ATTTAAGCTGATTATTAACT+GGG | - | chr1_3:14015854-14015873 | None:intergenic | 20.0% |
| !! | TATTTAAGCTGATTATTAAC+TGG | - | chr1_3:14015855-14015874 | None:intergenic | 20.0% |
| !! | AATGCAAACAATATATTTAG+GGG | - | chr1_3:14016047-14016066 | None:intergenic | 20.0% |
| !! | CAAATGCAAACAATATATTT+AGG | - | chr1_3:14016049-14016068 | None:intergenic | 20.0% |
| ! | AGTATTGTTGTATAGGAATT+CGG | + | chr1_3:14011519-14011538 | Msa0105480:intron | 25.0% |
| ! | TGTATTTATGTTGTAGTATG+TGG | + | chr1_3:14011590-14011609 | Msa0105480:intron | 25.0% |
| ! | GTATTTATGTTGTAGTATGT+GGG | + | chr1_3:14011591-14011610 | Msa0105480:intron | 25.0% |
| ! | TTTGTAGAGAAAAAATGCTT+TGG | + | chr1_3:14011763-14011782 | Msa0105480:intron | 25.0% |
| ! | TACAATGAATCTAAGCTAAA+TGG | - | chr1_3:14012119-14012138 | None:intergenic | 25.0% |
| ! | TATTTCATTTCCCTTCATAA+AGG | + | chr1_3:14012306-14012325 | Msa0105480:intron | 25.0% |
| ! | ACAATTTATGATGCTTATAG+AGG | + | chr1_3:14012430-14012449 | Msa0105480:intron | 25.0% |
| !! | TTTTGCATTAGAATGATGAA+CGG | - | chr1_3:14012794-14012813 | None:intergenic | 25.0% |
| !!! | ACTTTATAAGCTGATTTTGT+GGG | + | chr1_3:14012943-14012962 | Msa0105480:intron | 25.0% |
| ! | AGACTTAGAATTTGGATTTA+GGG | - | chr1_3:14012980-14012999 | None:intergenic | 25.0% |
| ! | TAGACTTAGAATTTGGATTT+AGG | - | chr1_3:14012981-14013000 | None:intergenic | 25.0% |
| ! | AAGCTGAATAATAAAGATCT+AGG | - | chr1_3:14013005-14013024 | None:intergenic | 25.0% |
| !!! | TGTTAGTCTTAGAAATTACA+TGG | + | chr1_3:14013238-14013257 | Msa0105480:intron | 25.0% |
| !!! | GTTAGTCTTAGAAATTACAT+GGG | + | chr1_3:14013239-14013258 | Msa0105480:intron | 25.0% |
| !!! | TTAGTCTTAGAAATTACATG+GGG | + | chr1_3:14013240-14013259 | Msa0105480:intron | 25.0% |
| ! | TTTGAAAGTGACAGTTAAAT+CGG | - | chr1_3:14013446-14013465 | None:intergenic | 25.0% |
| ! | TTACCCTTAGTTATTTATTG+CGG | + | chr1_3:14013500-14013519 | Msa0105480:intron | 25.0% |
| !!! | TAAATTTGTTTTAGCAACTG+CGG | + | chr1_3:14013673-14013692 | Msa0105480:intron | 25.0% |
| ! | TTGTAGCTATCTAATCTTAA+AGG | - | chr1_3:14013749-14013768 | None:intergenic | 25.0% |
| !! | GAGAAAACTGTTTGAAATAA+AGG | + | chr1_3:14013779-14013798 | Msa0105480:intron | 25.0% |
| !! | AAAACTGTTTGAAATAAAGG+AGG | + | chr1_3:14013782-14013801 | Msa0105480:intron | 25.0% |
| !! | AAACTGTTTGAAATAAAGGA+GGG | + | chr1_3:14013783-14013802 | Msa0105480:intron | 25.0% |
| !!! | TGGTCATAATTTTTTGGAAA+CGG | + | chr1_3:14013873-14013892 | Msa0105480:intron | 25.0% |
| !!! | CTACATCTTAGAATTTTGAT+TGG | + | chr1_3:14013941-14013960 | Msa0105480:CDS | 25.0% |
| ! | AAAATGTGTTTATAAGTGGT+GGG | - | chr1_3:14014011-14014030 | None:intergenic | 25.0% |
| ! | AAAAATGTGTTTATAAGTGG+TGG | - | chr1_3:14014012-14014031 | None:intergenic | 25.0% |
| ! | CTGAAAAATGTGTTTATAAG+TGG | - | chr1_3:14014015-14014034 | None:intergenic | 25.0% |
| !! | CACTTATAAACACATTTTTC+AGG | + | chr1_3:14014013-14014032 | Msa0105480:intron | 25.0% |
| ! | ATATAAAATTGTCACCTTGT+AGG | - | chr1_3:14014510-14014529 | None:intergenic | 25.0% |
| !! | TGCTTAATTTTCCAGTTTTT+TGG | + | chr1_3:14014560-14014579 | Msa0105480:intron | 25.0% |
| ! | GTATATATTAATGGCATGTA+AGG | - | chr1_3:14014647-14014666 | None:intergenic | 25.0% |
| ! | ATCACACACCTATTATATTA+GGG | - | chr1_3:14015068-14015087 | None:intergenic | 25.0% |
| !!! | AAGTTGATAAGATTAGAACA+TGG | + | chr1_3:14015166-14015185 | Msa0105480:intron | 25.0% |
| ! | ATAAGATTAGAACATGGATT+TGG | + | chr1_3:14015172-14015191 | Msa0105480:intron | 25.0% |
| !! | CAATTTTACATCAATACATG+GGG | - | chr1_3:14015213-14015232 | None:intergenic | 25.0% |
| !! | CACAATTTTACATCAATACA+TGG | - | chr1_3:14015215-14015234 | None:intergenic | 25.0% |
| !! | CATGTATTGATGTAAAATTG+TGG | + | chr1_3:14015213-14015232 | Msa0105480:intron | 25.0% |
| ! | TACAATTGTGGTTTATTACA+TGG | + | chr1_3:14015379-14015398 | Msa0105480:CDS | 25.0% |
| ! | ACAATTGTGGTTTATTACAT+GGG | + | chr1_3:14015380-14015399 | Msa0105480:CDS | 25.0% |
| ! | AAGAAAAAGAAGAAACGTTA+GGG | + | chr1_3:14015416-14015435 | Msa0105480:CDS | 25.0% |
| ! | AATATATTTAGGGGTTAACT+AGG | - | chr1_3:14016038-14016057 | None:intergenic | 25.0% |
| ! | CAAAAAGTAAGAACTTAAAC+AGG | - | chr1_3:14016083-14016102 | None:intergenic | 25.0% |
| !!! | CTGTTTAAGTTCTTACTTTT+TGG | + | chr1_3:14016081-14016100 | Msa0105480:intron | 25.0% |
| ! | GCTGTTAATTTATATTGTTC+AGG | + | chr1_3:14016249-14016268 | Msa0105480:intron | 25.0% |
| ! | AATGAGATGGTAAAATATCT+TGG | - | chr1_3:14016358-14016377 | None:intergenic | 25.0% |
| !! | AAGATATTTTACCATCTCAT+TGG | + | chr1_3:14016357-14016376 | Msa0105480:intron | 25.0% |
| ! | TAGTTTATGCTATACTTCAA+TGG | + | chr1_3:14016382-14016401 | Msa0105480:intron | 25.0% |
| ! | CAAAATTATCACAATGAACA+AGG | - | chr1_3:14016637-14016656 | None:intergenic | 25.0% |
| ! | TGTAATGTAAATAGTTTGAC+AGG | + | chr1_3:14016655-14016674 | Msa0105480:three_prime_UTR | 25.0% |
| TATTCAAGATATGATGTTGC+AGG | + | chr1_3:14011194-14011213 | Msa0105480:intron | 30.0% | |
| ATTCAAGATATGATGTTGCA+GGG | + | chr1_3:14011195-14011214 | Msa0105480:intron | 30.0% | |
| AATGACGATTGAAATTTCTC+CGG | - | chr1_3:14011229-14011248 | None:intergenic | 30.0% | |
| AAGAGGAAGATTTAACAGTA+AGG | + | chr1_3:14011338-14011357 | Msa0105480:CDS | 30.0% | |
| GTCTTCAACCAAAAACTAAA+TGG | - | chr1_3:14011472-14011491 | None:intergenic | 30.0% | |
| GAAGCTTAGTATTGTTGTAT+AGG | + | chr1_3:14011512-14011531 | Msa0105480:intron | 30.0% | |
| CAATAGAGAGTTGAATAATC+AGG | - | chr1_3:14011551-14011570 | None:intergenic | 30.0% | |
| TCTATTGACGTTCTTCAATT+GGG | + | chr1_3:14011564-14011583 | Msa0105480:intron | 30.0% | |
| AAAAAATGCTTTGGCTATAC+TGG | + | chr1_3:14011772-14011791 | Msa0105480:intron | 30.0% | |
| AGGTTTACAATTGATCATTC+CGG | - | chr1_3:14011804-14011823 | None:intergenic | 30.0% | |
| TATCTACCAAGGTATGAATA+AGG | - | chr1_3:14011841-14011860 | None:intergenic | 30.0% | |
| ATACCTTGGTAGATATAGTT+AGG | + | chr1_3:14011846-14011865 | Msa0105480:intron | 30.0% | |
| TAGTAGAGTCAATGCAATTT+AGG | + | chr1_3:14012147-14012166 | Msa0105480:intron | 30.0% | |
| AATGATAGTTGAAGTCTTGA+AGG | + | chr1_3:14012197-14012216 | Msa0105480:intron | 30.0% | |
| ATGATAGTTGAAGTCTTGAA+GGG | + | chr1_3:14012198-14012217 | Msa0105480:intron | 30.0% | |
| !!! | CAACATAGTTTTGATTTCTG+TGG | + | chr1_3:14012232-14012251 | Msa0105480:intron | 30.0% |
| AAGGATGTATCCTTTATGAA+GGG | - | chr1_3:14012319-14012338 | None:intergenic | 30.0% | |
| AAAGGATGTATCCTTTATGA+AGG | - | chr1_3:14012320-14012339 | None:intergenic | 30.0% | |
| ATAGCCAAAATAAGGATAGA+GGG | - | chr1_3:14012374-14012393 | None:intergenic | 30.0% | |
| AATAGCCAAAATAAGGATAG+AGG | - | chr1_3:14012375-14012394 | None:intergenic | 30.0% | |
| ! | AATAAGAAACATCCTTTTGC+AGG | - | chr1_3:14012511-14012530 | None:intergenic | 30.0% |
| ! | TAAATCTTCAATTTCGAGTC+TGG | + | chr1_3:14012627-14012646 | Msa0105480:CDS | 30.0% |
| CATATAATCATCAGTCTTTG+AGG | - | chr1_3:14012674-14012693 | None:intergenic | 30.0% | |
| CTCAAAGACTGATGATTATA+TGG | + | chr1_3:14012672-14012691 | Msa0105480:CDS | 30.0% | |
| TTTGCATTAGAATGATGAAC+GGG | - | chr1_3:14012793-14012812 | None:intergenic | 30.0% | |
| CAAAATCAGCTTATAAAGTG+AGG | - | chr1_3:14012942-14012961 | None:intergenic | 30.0% | |
| !! | CACTTTATAAGCTGATTTTG+TGG | + | chr1_3:14012942-14012961 | Msa0105480:intron | 30.0% |
| !! | CTTTATAAGCTGATTTTGTG+GGG | + | chr1_3:14012944-14012963 | Msa0105480:intron | 30.0% |
| ! | TCTAGGATAGACTTAGAATT+TGG | - | chr1_3:14012988-14013007 | None:intergenic | 30.0% |
| ! | TAGTATGGACTAATGTATGT+GGG | - | chr1_3:14013096-14013115 | None:intergenic | 30.0% |
| !! | ACCTTATAAGCCAGTTTTAT+GGG | + | chr1_3:14013155-14013174 | Msa0105480:intron | 30.0% |
| !! | CATCTGTCCAAATTTTAAGA+TGG | + | chr1_3:14013190-14013209 | Msa0105480:intron | 30.0% |
| !! | TTTAAGATGGTTTGATTTGG+TGG | + | chr1_3:14013203-14013222 | Msa0105480:intron | 30.0% |
| ! | TAGTCTTAGAAATTACATGG+GGG | + | chr1_3:14013241-14013260 | Msa0105480:intron | 30.0% |
| TTACTAGATGTAATGACTCA+TGG | + | chr1_3:14013282-14013301 | Msa0105480:intron | 30.0% | |
| TACTAGATGTAATGACTCAT+GGG | + | chr1_3:14013283-14013302 | Msa0105480:intron | 30.0% | |
| ! | ATGTTGGATCTGAAACTTTA+CGG | + | chr1_3:14013319-14013338 | Msa0105480:intron | 30.0% |
| AAGAGACACTTAAAAAGGAA+CGG | - | chr1_3:14013405-14013424 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTAAGTGTCTCTTT+TGG | + | chr1_3:14013406-14013425 | Msa0105480:intron | 30.0% |
| TCCAAAAGAGACACTTAAAA+AGG | - | chr1_3:14013410-14013429 | None:intergenic | 30.0% | |
| TCTCCGCAATAAATAACTAA+GGG | - | chr1_3:14013506-14013525 | None:intergenic | 30.0% | |
| !! | AAATTCTAAGATGTAGAGTC+TGG | - | chr1_3:14013937-14013956 | None:intergenic | 30.0% |
| !! | CTTATAAACCGGTTTTGTAA+GGG | - | chr1_3:14013978-14013997 | None:intergenic | 30.0% |
| ! | TTCTACATCAGTTACTTTGT+TGG | + | chr1_3:14014212-14014231 | Msa0105480:intron | 30.0% |
| ! | TTTGTGGTTATCGTTTTACA+AGG | + | chr1_3:14014330-14014349 | Msa0105480:intron | 30.0% |
| ! | ATTTTTATCTGCACTGTCAT+TGG | + | chr1_3:14014537-14014556 | Msa0105480:intron | 30.0% |
| TATATGTTATATGTACCACC+AGG | + | chr1_3:14014737-14014756 | Msa0105480:intron | 30.0% | |
| ATATGTTATATGTACCACCA+GGG | + | chr1_3:14014738-14014757 | Msa0105480:intron | 30.0% | |
| ATATTAAAGCTCTGTTCAGT+TGG | + | chr1_3:14014894-14014913 | Msa0105480:intron | 30.0% | |
| ! | TGTATCACATCACATGTTTT+TGG | + | chr1_3:14014964-14014983 | Msa0105480:intron | 30.0% |
| CACCTATTATATTAGGGATT+GGG | - | chr1_3:14015062-14015081 | None:intergenic | 30.0% | |
| ACACCTATTATATTAGGGAT+TGG | - | chr1_3:14015063-14015082 | None:intergenic | 30.0% | |
| CATCACACACCTATTATATT+AGG | - | chr1_3:14015069-14015088 | None:intergenic | 30.0% | |
| ATCATACTCTGTCAATCATT+TGG | + | chr1_3:14015117-14015136 | Msa0105480:intron | 30.0% | |
| AATAAACCACAATTGTATCC+TGG | - | chr1_3:14015376-14015395 | None:intergenic | 30.0% | |
| GAAGAAAAAGAAGAAACGTT+AGG | + | chr1_3:14015415-14015434 | Msa0105480:CDS | 30.0% | |
| ACCAATTTCAATTACTTGAG+TGG | - | chr1_3:14015476-14015495 | None:intergenic | 30.0% | |
| AATATGGACCTATTATTACG+TGG | + | chr1_3:14015688-14015707 | Msa0105480:CDS | 30.0% | |
| GATTATTAACTGGGTAACTA+TGG | - | chr1_3:14015845-14015864 | None:intergenic | 30.0% | |
| TGTATACTAACGATACGATT+AGG | + | chr1_3:14015900-14015919 | Msa0105480:intron | 30.0% | |
| !!! | CTCTGACCACTATTTTTATT+GGG | + | chr1_3:14015985-14016004 | Msa0105480:intron | 30.0% |
| CACAATCCCAATAAAAATAG+TGG | - | chr1_3:14015994-14016013 | None:intergenic | 30.0% | |
| TTAACAGCAGCATAAAATGT+TGG | - | chr1_3:14016237-14016256 | None:intergenic | 30.0% | |
| ACTTATAAACATCAGCCTAA+AGG | - | chr1_3:14016711-14016730 | None:intergenic | 30.0% | |
| !! | GTTTATAAGTTGATCGAACA+AGG | + | chr1_3:14016721-14016740 | Msa0105480:three_prime_UTR | 30.0% |
| GATACTCGTGTGTAACTATT+AGG | + | chr1_3:14010943-14010962 | Msa0105480:five_prime_UTR | 35.0% | |
| CAAGCAAGTGTTTATAATGC+TGG | - | chr1_3:14011003-14011022 | None:intergenic | 35.0% | |
| GGGTGCAAGAAAAGATTAAT+TGG | - | chr1_3:14011155-14011174 | None:intergenic | 35.0% | |
| GGAGAAATTTCAATCGTCAT+TGG | + | chr1_3:14011228-14011247 | Msa0105480:CDS | 35.0% | |
| AGGAAGATTTAACAGTAAGG+TGG | + | chr1_3:14011341-14011360 | Msa0105480:intron | 35.0% | |
| TGGTTCATTTCTCTTTGTCT+AGG | + | chr1_3:14011361-14011380 | Msa0105480:intron | 35.0% | |
| AAATTTAGTGGCACAACACT+TGG | - | chr1_3:14011438-14011457 | None:intergenic | 35.0% | |
| ! | AAGTGTTGTGCCACTAAATT+TGG | + | chr1_3:14011437-14011456 | Msa0105480:intron | 35.0% |
| !!! | CAGCTATGCCATTTAGTTTT+TGG | + | chr1_3:14011461-14011480 | Msa0105480:intron | 35.0% |
| TTGTTGTATAGGAATTCGGT+AGG | + | chr1_3:14011523-14011542 | Msa0105480:intron | 35.0% | |
| CTCTATTGACGTTCTTCAAT+TGG | + | chr1_3:14011563-14011582 | Msa0105480:intron | 35.0% | |
| AGTCTTGGATCTGAAGAAAA+TGG | - | chr1_3:14011681-14011700 | None:intergenic | 35.0% | |
| ! | TTTTCTTCAGATCCAAGACT+AGG | + | chr1_3:14011681-14011700 | Msa0105480:intron | 35.0% |
| TTTCTTCAGATCCAAGACTA+GGG | + | chr1_3:14011682-14011701 | Msa0105480:intron | 35.0% | |
| ATTGTAAACCTGTCAACACT+CGG | + | chr1_3:14011813-14011832 | Msa0105480:intron | 35.0% | |
| TCACCTAACTATATCTACCA+AGG | - | chr1_3:14011852-14011871 | None:intergenic | 35.0% | |
| AACTATCTTGTAGTGAATGC+TGG | + | chr1_3:14011879-14011898 | Msa0105480:intron | 35.0% | |
| AATTCAAATGATCAATCGCC+AGG | + | chr1_3:14011961-14011980 | Msa0105480:intron | 35.0% | |
| TCTGCAACAAGTAGATAGTT+TGG | + | chr1_3:14012025-14012044 | Msa0105480:intron | 35.0% | |
| AGAATATTGAGTCCTGCAAA+AGG | + | chr1_3:14012496-14012515 | Msa0105480:intron | 35.0% | |
| AAAAGGGACACATAGATAGA+GGG | - | chr1_3:14012826-14012845 | None:intergenic | 35.0% | |
| ! | GTAGTATGGACTAATGTATG+TGG | - | chr1_3:14013097-14013116 | None:intergenic | 35.0% |
| ! | TAAAACTGGCTTATAAGGTG+AGG | - | chr1_3:14013154-14013173 | None:intergenic | 35.0% |
| ! | CACCTTATAAGCCAGTTTTA+TGG | + | chr1_3:14013154-14013173 | Msa0105480:intron | 35.0% |
| ! | TCCCATAAAACTGGCTTATA+AGG | - | chr1_3:14013159-14013178 | None:intergenic | 35.0% |
| CTAACTTCATCCCATAAAAC+TGG | - | chr1_3:14013168-14013187 | None:intergenic | 35.0% | |
| !! | CAGTTTTATGGGATGAAGTT+AGG | + | chr1_3:14013166-14013185 | Msa0105480:intron | 35.0% |
| ACTAGATGTAATGACTCATG+GGG | + | chr1_3:14013284-14013303 | Msa0105480:intron | 35.0% | |
| TCAGTAGATTCCAATCTAGA+TGG | + | chr1_3:14013351-14013370 | Msa0105480:intron | 35.0% | |
| CTCTCCGCAATAAATAACTA+AGG | - | chr1_3:14013507-14013526 | None:intergenic | 35.0% | |
| TGACAATTAAAACGGAACAG+AGG | + | chr1_3:14013645-14013664 | Msa0105480:intron | 35.0% | |
| !!! | TAATTTTTTGGAAACGGCAG+CGG | + | chr1_3:14013879-14013898 | Msa0105480:intron | 35.0% |
| TAACTCAACCCTTACAAAAC+CGG | + | chr1_3:14013967-14013986 | Msa0105480:CDS | 35.0% | |
| !! | CCTTATAAACCGGTTTTGTA+AGG | - | chr1_3:14013979-14013998 | None:intergenic | 35.0% |
| ! | CCTTACAAAACCGGTTTATA+AGG | + | chr1_3:14013976-14013995 | Msa0105480:CDS | 35.0% |
| TCGATGGTATATGTTTGAAC+AGG | - | chr1_3:14014461-14014480 | None:intergenic | 35.0% | |
| TGTTCAAACATATACCATCG+AGG | + | chr1_3:14014460-14014479 | Msa0105480:CDS | 35.0% | |
| GTTCAAACATATACCATCGA+GGG | + | chr1_3:14014461-14014480 | Msa0105480:CDS | 35.0% | |
| ACGCTCAATTACCAAAAAAC+TGG | - | chr1_3:14014574-14014593 | None:intergenic | 35.0% | |
| TATTAGGGATTGGGTCAAAA+TGG | - | chr1_3:14015053-14015072 | None:intergenic | 35.0% | |
| GACCCAATCCCTAATATAAT+AGG | + | chr1_3:14015057-14015076 | Msa0105480:intron | 35.0% | |
| !! | GCTCTGAAAGTTCGATAATT+GGG | - | chr1_3:14015297-14015316 | None:intergenic | 35.0% |
| !! | TGCTCTGAAAGTTCGATAAT+TGG | - | chr1_3:14015298-14015317 | None:intergenic | 35.0% |
| ATCTCAAAGTTATCTCAGAC+CGG | + | chr1_3:14015347-14015366 | Msa0105480:CDS | 35.0% | |
| AAGAAACGTTAGGGAAGTTT+AGG | + | chr1_3:14015425-14015444 | Msa0105480:CDS | 35.0% | |
| GCCACTCAAGTAATTGAAAT+TGG | + | chr1_3:14015472-14015491 | Msa0105480:CDS | 35.0% | |
| TTAATATCATCAACTGCCAG+TGG | + | chr1_3:14015613-14015632 | Msa0105480:CDS | 35.0% | |
| TGGGTTTCATCTTGCTAATA+TGG | + | chr1_3:14015672-14015691 | Msa0105480:CDS | 35.0% | |
| AATCTGGTAATAGGAAACTC+GGG | - | chr1_3:14015754-14015773 | None:intergenic | 35.0% | |
| CAATCTGGTAATAGGAAACT+CGG | - | chr1_3:14015755-14015774 | None:intergenic | 35.0% | |
| CCAATAAAAATAGTGGTCAG+AGG | - | chr1_3:14015987-14016006 | None:intergenic | 35.0% | |
| !!! | CCTCTGACCACTATTTTTAT+TGG | + | chr1_3:14015984-14016003 | Msa0105480:intron | 35.0% |
| TTTAAACCTCACCAATGCTT+TGG | + | chr1_3:14016152-14016171 | Msa0105480:intron | 35.0% | |
| TTGTCCAAATTCCAAAGCAT+TGG | - | chr1_3:14016166-14016185 | None:intergenic | 35.0% | |
| ! | TGTTGCTTCTACATGAAATG+TGG | + | chr1_3:14016308-14016327 | Msa0105480:intron | 35.0% |
| GTTGCTTCTACATGAAATGT+GGG | + | chr1_3:14016309-14016328 | Msa0105480:intron | 35.0% | |
| CATAAACTAGTCCAATGAGA+TGG | - | chr1_3:14016371-14016390 | None:intergenic | 35.0% | |
| TGATTGATCAAGTCTTGATG+TGG | + | chr1_3:14016591-14016610 | Msa0105480:exon | 35.0% | |
| !! | GTAGTCATGAATTAGCCTTT+AGG | + | chr1_3:14016693-14016712 | Msa0105480:three_prime_UTR | 35.0% |
| !!! | TCGAACAAGGCCATATTTTT+TGG | + | chr1_3:14016734-14016753 | Msa0105480:three_prime_UTR | 35.0% |
| !!! | ACAAGGCCATATTTTTTGGA+TGG | + | chr1_3:14016738-14016757 | Msa0105480:three_prime_UTR | 35.0% |
| ! | AAGGTGCCATCCAAAAAATA+TGG | - | chr1_3:14016747-14016766 | None:intergenic | 35.0% |
| ACTCGTGTGTAACTATTAGG+CGG | + | chr1_3:14010946-14010965 | Msa0105480:five_prime_UTR | 40.0% | |
| TAACTATTAGGCGGCTTTCA+TGG | + | chr1_3:14010955-14010974 | Msa0105480:exon | 40.0% | |
| TTTCATGGTTCCAACTGAGT+TGG | + | chr1_3:14010970-14010989 | Msa0105480:exon | 40.0% | |
| !!! | TAATCCGCGCTTGTTTTAGT+GGG | - | chr1_3:14011090-14011109 | None:intergenic | 40.0% |
| !!! | ATAATCCGCGCTTGTTTTAG+TGG | - | chr1_3:14011091-14011110 | None:intergenic | 40.0% |
| CACTTGGATGTTGTGGTATT+TGG | - | chr1_3:14011422-14011441 | None:intergenic | 40.0% | |
| GCATAGCTGACCAAATTTAG+TGG | - | chr1_3:14011450-14011469 | None:intergenic | 40.0% | |
| GATGTCGTTATTACCCACAA+CGG | + | chr1_3:14011616-14011635 | Msa0105480:intron | 40.0% | |
| TTCTTCAGATCCAAGACTAG+GGG | + | chr1_3:14011683-14011702 | Msa0105480:intron | 40.0% | |
| ATTTAAGTCTCCCCTAGTCT+TGG | - | chr1_3:14011696-14011715 | None:intergenic | 40.0% | |
| GGGAGACTTAAATAACTCCT+TGG | + | chr1_3:14011703-14011722 | Msa0105480:intron | 40.0% | |
| TAAATAACTCCTTGGTCTCG+AGG | + | chr1_3:14011711-14011730 | Msa0105480:intron | 40.0% | |
| AATCAGTCCTCAAACTGCTT+TGG | - | chr1_3:14011995-14012014 | None:intergenic | 40.0% | |
| ATTTCTGTGGTCCAGCATAA+GGG | + | chr1_3:14012245-14012264 | Msa0105480:intron | 40.0% | |
| !! | GACACCCTCTATCCTTATTT+TGG | + | chr1_3:14012367-14012386 | Msa0105480:intron | 40.0% |
| ! | ATCTTCAATTTCGAGTCTGG+AGG | + | chr1_3:14012630-14012649 | Msa0105480:CDS | 40.0% |
| ACCATATAAAGCAAGCGCAA+GGG | - | chr1_3:14012740-14012759 | None:intergenic | 40.0% | |
| CAAAAGGGACACATAGATAG+AGG | - | chr1_3:14012827-14012846 | None:intergenic | 40.0% | |
| ! | TGATTTTGTGGGGTTGAGTT+AGG | + | chr1_3:14012954-14012973 | Msa0105480:intron | 40.0% |
| TGTATGTGGGTGGAATAACA+GGG | - | chr1_3:14013083-14013102 | None:intergenic | 40.0% | |
| ATGTATGTGGGTGGAATAAC+AGG | - | chr1_3:14013084-14013103 | None:intergenic | 40.0% | |
| ! | TATGGACTAATGTATGTGGG+TGG | - | chr1_3:14013093-14013112 | None:intergenic | 40.0% |
| GTTCAGGAACATCAGTAGTA+TGG | - | chr1_3:14013111-14013130 | None:intergenic | 40.0% | |
| TACTGATGTTCCTGAACAAG+AGG | + | chr1_3:14013114-14013133 | Msa0105480:intron | 40.0% | |
| CTAGATGTAATGACTCATGG+GGG | + | chr1_3:14013285-14013304 | Msa0105480:intron | 40.0% | |
| TAGATGTAATGACTCATGGG+GGG | + | chr1_3:14013286-14013305 | Msa0105480:intron | 40.0% | |
| GATTCCAATCTAGATGGTGA+TGG | + | chr1_3:14013357-14013376 | Msa0105480:intron | 40.0% | |
| GAAACCATCACCATCTAGAT+TGG | - | chr1_3:14013364-14013383 | None:intergenic | 40.0% | |
| !! | GGTTTTGTAAGGGTTGAGTT+AGG | - | chr1_3:14013968-14013987 | None:intergenic | 40.0% |
| ! | CAAAACCGGTTTATAAGGTG+AGG | + | chr1_3:14013981-14014000 | Msa0105480:intron | 40.0% |
| GCAATCCTCACCTTATAAAC+CGG | - | chr1_3:14013989-14014008 | None:intergenic | 40.0% | |
| AGGCCATATTTCATCCAATG+TGG | + | chr1_3:14014033-14014052 | Msa0105480:intron | 40.0% | |
| GGCCATATTTCATCCAATGT+GGG | + | chr1_3:14014034-14014053 | Msa0105480:intron | 40.0% | |
| GCCATATTTCATCCAATGTG+GGG | + | chr1_3:14014035-14014054 | Msa0105480:intron | 40.0% | |
| AATTGATAAGAGCCCCACAT+TGG | - | chr1_3:14014050-14014069 | None:intergenic | 40.0% | |
| !! | AGTGTCTGTGAGTGTTACTT+TGG | + | chr1_3:14014778-14014797 | Msa0105480:intron | 40.0% |
| TAGTGAGTAGGAGTTGAACT+TGG | - | chr1_3:14014808-14014827 | None:intergenic | 40.0% | |
| !!! | ACATGTTTTTGGACCCAATC+AGG | + | chr1_3:14014975-14014994 | Msa0105480:intron | 40.0% |
| !!! | CATGTTTTTGGACCCAATCA+GGG | + | chr1_3:14014976-14014995 | Msa0105480:intron | 40.0% |
| ATCAACTTAGAGCACATCTG+CGG | - | chr1_3:14015154-14015173 | None:intergenic | 40.0% | |
| !! | ATGATGGATGAGTTGGAAGA+TGG | + | chr1_3:14015250-14015269 | Msa0105480:CDS | 40.0% |
| ! | TGATGGATGAGTTGGAAGAT+GGG | + | chr1_3:14015251-14015270 | Msa0105480:CDS | 40.0% |
| CACAATTGTATCCTGGAAAC+CGG | - | chr1_3:14015369-14015388 | None:intergenic | 40.0% | |
| TGGTTGTGATGAATTCTGAG+AGG | + | chr1_3:14015521-14015540 | Msa0105480:CDS | 40.0% | |
| ! | GTGATGAATTCTGAGAGGTT+TGG | + | chr1_3:14015526-14015545 | Msa0105480:CDS | 40.0% |
| ! | GAATTCTGAGAGGTTTGGAA+TGG | + | chr1_3:14015531-14015550 | Msa0105480:CDS | 40.0% |
| CCAGTACTTTCAAACGATGA+AGG | - | chr1_3:14015639-14015658 | None:intergenic | 40.0% | |
| ! | CCTTCATCGTTTGAAAGTAC+TGG | + | chr1_3:14015636-14015655 | Msa0105480:CDS | 40.0% |
| TACTGGAGCAATCATCAGAT+GGG | + | chr1_3:14015653-14015672 | Msa0105480:CDS | 40.0% | |
| TTGCTTGGCAAGAAACAATC+TGG | + | chr1_3:14015721-14015740 | Msa0105480:CDS | 40.0% | |
| CGAGTTTCCTATTACCAGAT+TGG | + | chr1_3:14015753-14015772 | Msa0105480:CDS | 40.0% | |
| TCGACTTCCAATCTGGTAAT+AGG | - | chr1_3:14015763-14015782 | None:intergenic | 40.0% | |
| ATTACCAGATTGGAAGTCGA+CGG | + | chr1_3:14015763-14015782 | Msa0105480:CDS | 40.0% | |
| ! | CTGCTGCGCATAAGATTTTA+AGG | - | chr1_3:14015957-14015976 | None:intergenic | 40.0% |
| !! | CAAATTCCAAAGCATTGGTG+AGG | - | chr1_3:14016161-14016180 | None:intergenic | 40.0% |
| !! | CTCACCAATGCTTTGGAATT+TGG | + | chr1_3:14016159-14016178 | Msa0105480:intron | 40.0% |
| AGGAAATTGCTCCAGATCAT+GGG | - | chr1_3:14016524-14016543 | None:intergenic | 40.0% | |
| GCAATTTCCTGCACTTAAAC+TGG | + | chr1_3:14016534-14016553 | Msa0105480:CDS | 40.0% | |
| TAGTTTGACAGGCTCTTCTT+TGG | + | chr1_3:14016666-14016685 | Msa0105480:three_prime_UTR | 40.0% | |
| TGGATTGCAACCAACTCAGT+TGG | - | chr1_3:14010983-14011002 | None:intergenic | 45.0% | |
| GCTTGCGTTGCTTGAAAACT+TGG | + | chr1_3:14011018-14011037 | Msa0105480:CDS | 45.0% | |
| GTTGCTTGAAAACTTGGACG+AGG | + | chr1_3:14011024-14011043 | Msa0105480:CDS | 45.0% | |
| CCAGTGAGTAAAGCAACAGT+TGG | - | chr1_3:14011061-14011080 | None:intergenic | 45.0% | |
| !! | CCAACTGTTGCTTTACTCAC+TGG | + | chr1_3:14011058-14011077 | Msa0105480:CDS | 45.0% |
| !!! | AATCCGCGCTTGTTTTAGTG+GGG | - | chr1_3:14011089-14011108 | None:intergenic | 45.0% |
| CGATTGAAATTTCTCCGGTC+TGG | - | chr1_3:14011224-14011243 | None:intergenic | 45.0% | |
| GCTGTCTGCAAACAAACTGT+GGG | - | chr1_3:14011256-14011275 | None:intergenic | 45.0% | |
| ! | TGCAGACAGCGTTGAATTCT+CGG | + | chr1_3:14011266-14011285 | Msa0105480:CDS | 45.0% |
| ATCCACCACAGCAATACGTA+AGG | - | chr1_3:14011292-14011311 | None:intergenic | 45.0% | |
| ! | CGCTTTGGTGTGATTCAAAG+AGG | + | chr1_3:14011321-14011340 | Msa0105480:CDS | 45.0% |
| TATTACCCACAACGGTCATC+AGG | + | chr1_3:14011624-14011643 | Msa0105480:intron | 45.0% | |
| ATTACCCACAACGGTCATCA+GGG | + | chr1_3:14011625-14011644 | Msa0105480:intron | 45.0% | |
| TATTCCCTGATGACCGTTGT+GGG | - | chr1_3:14011632-14011651 | None:intergenic | 45.0% | |
| ATATTCCCTGATGACCGTTG+TGG | - | chr1_3:14011633-14011652 | None:intergenic | 45.0% | |
| CTCAGTCGGAGAATGTTAGA+TGG | + | chr1_3:14011739-14011758 | Msa0105480:intron | 45.0% | |
| TTGGCTATACTGGAAGCAAC+CGG | + | chr1_3:14011782-14011801 | Msa0105480:intron | 45.0% | |
| ! | TCGGTGCCTTATTCATACCT+TGG | + | chr1_3:14011832-14011851 | Msa0105480:intron | 45.0% |
| TTGCTCACCAAAGCAGTTTG+AGG | + | chr1_3:14011985-14012004 | Msa0105480:intron | 45.0% | |
| ATAGTTTGGTCTCTGTGCTG+TGG | + | chr1_3:14012039-14012058 | Msa0105480:intron | 45.0% | |
| TCCAGCATAAGTGTGAGTGT+TGG | + | chr1_3:14012062-14012081 | Msa0105480:intron | 45.0% | |
| TCCAACACTCACACTTATGC+TGG | - | chr1_3:14012066-14012085 | None:intergenic | 45.0% | |
| GATTTCTGTGGTCCAGCATA+AGG | + | chr1_3:14012244-14012263 | Msa0105480:intron | 45.0% | |
| TTTCTGTGGTCCAGCATAAG+GGG | + | chr1_3:14012246-14012265 | Msa0105480:intron | 45.0% | |
| ACCCTTGCGCTTGCTTTATA+TGG | + | chr1_3:14012736-14012755 | Msa0105480:CDS | 45.0% | |
| CACCATATAAAGCAAGCGCA+AGG | - | chr1_3:14012741-14012760 | None:intergenic | 45.0% | |
| TGGTGATATGTCACTGACAC+AGG | + | chr1_3:14012756-14012775 | Msa0105480:CDS | 45.0% | |
| GCCTAGGTAGTATCTCTAGT+CGG | - | chr1_3:14012896-14012915 | None:intergenic | 45.0% | |
| CTACCTAGGCAGTGCTTAAA+AGG | + | chr1_3:14012906-14012925 | Msa0105480:intron | 45.0% | |
| !! | AAGCCTTTTAAGCACTGCCT+AGG | - | chr1_3:14012912-14012931 | None:intergenic | 45.0% |
| TAGGCAGTGCTTAAAAGGCT+TGG | + | chr1_3:14012911-14012930 | Msa0105480:intron | 45.0% | |
| !! | ACTAAACATCCAGAGCGTTG+AGG | - | chr1_3:14013033-14013052 | None:intergenic | 45.0% |
| ! | ACGCTCTGGATGTTTAGTCT+TGG | + | chr1_3:14013035-14013054 | Msa0105480:intron | 45.0% |
| ! | CGCTCTGGATGTTTAGTCTT+GGG | + | chr1_3:14013036-14013055 | Msa0105480:intron | 45.0% |
| TCAACACAAGCCTCTTGTTC+AGG | - | chr1_3:14013127-14013146 | None:intergenic | 45.0% | |
| !!! | TTTGTTTTAGCAACTGCGGC+CGG | + | chr1_3:14013677-14013696 | Msa0105480:intron | 45.0% |
| GCCCCACATTGGATGAAATA+TGG | - | chr1_3:14014039-14014058 | None:intergenic | 45.0% | |
| AATCCTTCCTGGTGGTAAGT+CGG | - | chr1_3:14014438-14014457 | None:intergenic | 45.0% | |
| GTTTGAACAGGAATCCTTCC+TGG | - | chr1_3:14014449-14014468 | None:intergenic | 45.0% | |
| GGGAAGTGACAAAGGATTTG+AGG | + | chr1_3:14014481-14014500 | Msa0105480:CDS | 45.0% | |
| AGGATTTGAGGATGCCTACA+AGG | + | chr1_3:14014493-14014512 | Msa0105480:CDS | 45.0% | |
| ! | GGGTTTTTGCCAGATGATGA+TGG | + | chr1_3:14015234-14015253 | Msa0105480:intron | 45.0% |
| CCAACTCATCCATCATCATC+TGG | - | chr1_3:14015246-14015265 | None:intergenic | 45.0% | |
| !! | CCAGATGATGATGGATGAGT+TGG | + | chr1_3:14015243-14015262 | Msa0105480:intron | 45.0% |
| ! | GATGGATGAGTTGGAAGATG+GGG | + | chr1_3:14015252-14015271 | Msa0105480:CDS | 45.0% |
| ! | ATGGATGAGTTGGAAGATGG+GGG | + | chr1_3:14015253-14015272 | Msa0105480:CDS | 45.0% |
| CGGTTTCCAGGATACAATTG+TGG | + | chr1_3:14015367-14015386 | Msa0105480:CDS | 45.0% | |
| ! | ACGTTAGGGAAGTTTAGGAC+TGG | + | chr1_3:14015430-14015449 | Msa0105480:CDS | 45.0% |
| ! | TGTTCCAGATGCATCGATGA+TGG | + | chr1_3:14015501-14015520 | Msa0105480:CDS | 45.0% |
| ACAACCATCATCGATGCATC+TGG | - | chr1_3:14015508-14015527 | None:intergenic | 45.0% | |
| TTTCAAACGATGAAGGCCAC+TGG | - | chr1_3:14015632-14015651 | None:intergenic | 45.0% | |
| GTACTGGAGCAATCATCAGA+TGG | + | chr1_3:14015652-14015671 | Msa0105480:CDS | 45.0% | |
| GACCTATTATTACGTGGACC+TGG | + | chr1_3:14015694-14015713 | Msa0105480:CDS | 45.0% | |
| CACCAGGTCCACGTAATAAT+AGG | - | chr1_3:14015699-14015718 | None:intergenic | 45.0% | |
| CTTAAGTGCTTCCCATGATC+TGG | + | chr1_3:14016510-14016529 | Msa0105480:CDS | 45.0% | |
| CAGGAAATTGCTCCAGATCA+TGG | - | chr1_3:14016525-14016544 | None:intergenic | 45.0% | |
| GACTTGATCAATCACCTAGC+AGG | - | chr1_3:14016585-14016604 | None:intergenic | 45.0% | |
| !! | TAGTTTAATTATTTATTATA+AGG | - | chr1_3:14014117-14014136 | None:intergenic | 5.0% |
| CAACCCCACTAAAACAAGCG+CGG | + | chr1_3:14011083-14011102 | Msa0105480:CDS | 50.0% | |
| ! | ACAAGCGCGGATTATTCGCA+AGG | + | chr1_3:14011096-14011115 | Msa0105480:CDS | 50.0% |
| ! | ATGTTGCAGGGTATCCAGAC+CGG | + | chr1_3:14011207-14011226 | Msa0105480:intron | 50.0% |
| CGCTGTCTGCAAACAAACTG+TGG | - | chr1_3:14011257-14011276 | None:intergenic | 50.0% | |
| GGCACAACACTTGGATGTTG+TGG | - | chr1_3:14011429-14011448 | None:intergenic | 50.0% | |
| TGAGAACTACCTCGAGACCA+AGG | - | chr1_3:14011723-14011742 | None:intergenic | 50.0% | |
| GTCTCGAGGTAGTTCTCAGT+CGG | + | chr1_3:14011725-14011744 | Msa0105480:intron | 50.0% | |
| !! | ATAAGGCACCGAGTGTTGAC+AGG | - | chr1_3:14011824-14011843 | None:intergenic | 50.0% |
| ACTGCTTTGGTGAGCAAACC+TGG | - | chr1_3:14011982-14012001 | None:intergenic | 50.0% | |
| TTCTGTGGTCCAGCATAAGG+GGG | + | chr1_3:14012247-14012266 | Msa0105480:intron | 50.0% | |
| GCAGACATGGCAAGAACATG+TGG | - | chr1_3:14012700-14012719 | None:intergenic | 50.0% | |
| GACACATAGATAGAGGGAGG+AGG | - | chr1_3:14012820-14012839 | None:intergenic | 50.0% | |
| AGGGACACATAGATAGAGGG+AGG | - | chr1_3:14012823-14012842 | None:intergenic | 50.0% | |
| GTAGTATCTCTAGTCGGCGT+AGG | - | chr1_3:14012890-14012909 | None:intergenic | 50.0% | |
| GCCGACTAGAGATACTACCT+AGG | + | chr1_3:14012892-14012911 | Msa0105480:intron | 50.0% | |
| !! | ATGTTTAGTCTTGGGCGCGA+GGG | + | chr1_3:14013044-14013063 | Msa0105480:intron | 50.0% |
| GGCGTTCTACTTTCCACTAC+TGG | - | chr1_3:14013728-14013747 | None:intergenic | 50.0% | |
| AATAGTGGCAGGACATGTCC+AGG | + | chr1_3:14013902-14013921 | Msa0105480:CDS | 50.0% | |
| ! | AGAGTCTGGTTTGATCCTCC+TGG | - | chr1_3:14013923-14013942 | None:intergenic | 50.0% |
| CTGATGTAGAATGAGCCAGC+TGG | - | chr1_3:14014203-14014222 | None:intergenic | 50.0% | |
| ! | CAGATAACCGACTTACCACC+AGG | + | chr1_3:14014428-14014447 | Msa0105480:intron | 50.0% |
| ! | TAACCGACTTACCACCAGGA+AGG | + | chr1_3:14014432-14014451 | Msa0105480:CDS | 50.0% |
| TGAACAGGAATCCTTCCTGG+TGG | - | chr1_3:14014446-14014465 | None:intergenic | 50.0% | |
| ACCATCGAGGGAAGTGACAA+AGG | + | chr1_3:14014473-14014492 | Msa0105480:CDS | 50.0% | |
| ! | TCCTTTGTCACTTCCCTCGA+TGG | - | chr1_3:14014477-14014496 | None:intergenic | 50.0% |
| ! | GTTATCTCAGACCGGTTTCC+AGG | + | chr1_3:14015355-14015374 | Msa0105480:CDS | 50.0% |
| TGGCCCAATTACACCAACTC+AGG | + | chr1_3:14015551-14015570 | Msa0105480:CDS | 50.0% | |
| GGCCCAATTACACCAACTCA+GGG | + | chr1_3:14015552-14015571 | Msa0105480:CDS | 50.0% | |
| GCCCAATTACACCAACTCAG+GGG | + | chr1_3:14015553-14015572 | Msa0105480:CDS | 50.0% | |
| !! | GCCCCTGAGTTGGTGTAATT+GGG | - | chr1_3:14015557-14015576 | None:intergenic | 50.0% |
| TTCTTGCCAAGCAAGTCACC+AGG | - | chr1_3:14015715-14015734 | None:intergenic | 50.0% | |
| !! | ATTGCCGTCGACTTCCAATC+TGG | - | chr1_3:14015770-14015789 | None:intergenic | 50.0% |
| CCAAGCTCCAGTTTAAGTGC+AGG | - | chr1_3:14016544-14016563 | None:intergenic | 50.0% | |
| CCTGCACTTAAACTGGAGCT+TGG | + | chr1_3:14016541-14016560 | Msa0105480:CDS | 50.0% | |
| CAATCACCTAGCAGGCAAAG+CGG | - | chr1_3:14016577-14016596 | None:intergenic | 50.0% | |
| CTCGGCCTTACGTATTGCTG+TGG | + | chr1_3:14011284-14011303 | Msa0105480:CDS | 55.0% | |
| GGCCTTACGTATTGCTGTGG+TGG | + | chr1_3:14011287-14011306 | Msa0105480:CDS | 55.0% | |
| GTGGATGAGCAGCATCGCTT+TGG | + | chr1_3:14011306-14011325 | Msa0105480:CDS | 55.0% | |
| ! | TCCAGCATAAGGGGGAGTGT+TGG | + | chr1_3:14012255-14012274 | Msa0105480:intron | 55.0% |
| TCCAACACTCCCCCTTATGC+TGG | - | chr1_3:14012259-14012278 | None:intergenic | 55.0% | |
| TGGGATGGGAGTAGCAGACA+TGG | - | chr1_3:14012713-14012732 | None:intergenic | 55.0% | |
| TGTCTGCTACTCCCATCCCA+AGG | + | chr1_3:14012713-14012732 | Msa0105480:CDS | 55.0% | |
| AAGCAAGCGCAAGGGTCCTT+GGG | - | chr1_3:14012732-14012751 | None:intergenic | 55.0% | |
| AAAGCAAGCGCAAGGGTCCT+TGG | - | chr1_3:14012733-14012752 | None:intergenic | 55.0% | |
| !! | GATGTTTAGTCTTGGGCGCG+AGG | + | chr1_3:14013043-14013062 | Msa0105480:intron | 55.0% |
| TGGAAACGGCAGCGGAATAG+TGG | + | chr1_3:14013887-14013906 | Msa0105480:intron | 55.0% | |
| CATCAATCACACGACCCTGG+TGG | - | chr1_3:14014755-14014774 | None:intergenic | 55.0% | |
| GCACATCAATCACACGACCC+TGG | - | chr1_3:14014758-14014777 | None:intergenic | 55.0% | |
| !! | GGCCCCTGAGTTGGTGTAAT+TGG | - | chr1_3:14015558-14015577 | None:intergenic | 55.0% |
| AGACGCACATGTTGCTGCAC+TGG | + | chr1_3:14015798-14015817 | Msa0105480:CDS | 55.0% | |
| AGCGCAAGGGTCCTTGGGAT+GGG | - | chr1_3:14012727-14012746 | None:intergenic | 60.0% | |
| AAGCGCAAGGGTCCTTGGGA+TGG | - | chr1_3:14012728-14012747 | None:intergenic | 60.0% | |
| GCTTGCACTCCTCAACGCTC+TGG | + | chr1_3:14013021-14013040 | Msa0105480:intron | 60.0% | |
| ! | TTACATGGGGGCGCGTGTCA+TGG | + | chr1_3:14013253-14013272 | Msa0105480:intron | 60.0% |
| ! | GACTCATGGGGGGCATGTCA+TGG | + | chr1_3:14013296-14013315 | Msa0105480:intron | 60.0% |
| ! | GGGGGGCATGTCATGGATGT+TGG | + | chr1_3:14013303-14013322 | Msa0105480:intron | 60.0% |
| !! | GTTTTAGCAACTGCGGCCGG+TGG | + | chr1_3:14013680-14013699 | Msa0105480:intron | 60.0% |
| GCTGGTCGTAGCGACGACAA+TGG | + | chr1_3:14013702-14013721 | Msa0105480:intron | 60.0% | |
| GCGACGACAATGGCCAGTAG+TGG | + | chr1_3:14013712-14013731 | Msa0105480:intron | 60.0% | |
| AACGGCAGCGGAATAGTGGC+AGG | + | chr1_3:14013891-14013910 | Msa0105480:intron | 60.0% | |
| AGTGGCAGGACATGTCCAGG+AGG | + | chr1_3:14013905-14013924 | Msa0105480:CDS | 60.0% | |
| GCAGAAGCAGCACGAAGCAG+AGG | - | chr1_3:14015325-14015344 | None:intergenic | 60.0% | |
| ! | GCCTTGTTCCGCGTCCAACT+CGG | - | chr1_3:14015579-14015598 | None:intergenic | 60.0% |
| !! | CGTGGACCTGGTGACTTGCT+TGG | + | chr1_3:14015706-14015725 | Msa0105480:CDS | 60.0% |
| ! | AGACAGCCGCTTTGCCTGCT+AGG | + | chr1_3:14016568-14016587 | Msa0105480:CDS | 60.0% |
| TCGTCGCTACGACCAGCCAC+CGG | - | chr1_3:14013699-14013718 | None:intergenic | 65.0% | |
| CACCAACTCAGGGGCCGAGT+TGG | + | chr1_3:14015562-14015581 | Msa0105480:CDS | 65.0% | |
| GTCCAACTCGGCCCCTGAGT+TGG | - | chr1_3:14015567-14015586 | None:intergenic | 65.0% | |
| ! | GCCGAGTTGGACGCGGAACA+AGG | + | chr1_3:14015575-14015594 | Msa0105480:CDS | 65.0% |
| TAGCAACTGCGGCCGGTGGC+TGG | + | chr1_3:14013684-14013703 | Msa0105480:intron | 70.0% | |
| ! | CTCAGGGGCCGAGTTGGACG+CGG | + | chr1_3:14015568-14015587 | Msa0105480:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 14010880 | 14016800 | 14010880 | ID=Msa0105480;Name=Msa0105480 |
| chr1_3 | mRNA | 14010880 | 14016800 | 14010880 | ID=Msa0105480-mRNA-1;Parent=Msa0105480;Name=Msa0105480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=94|0.66|0.85|0.85|1|1|7|203|431 |
| chr1_3 | exon | 14010880 | 14011117 | 14010880 | ID=Msa0105480-mRNA-1:exon:5492;Parent=Msa0105480-mRNA-1 |
| chr1_3 | exon | 14011216 | 14011359 | 14011216 | ID=Msa0105480-mRNA-1:exon:5493;Parent=Msa0105480-mRNA-1 |
| chr1_3 | exon | 14012619 | 14012777 | 14012619 | ID=Msa0105480-mRNA-1:exon:5494;Parent=Msa0105480-mRNA-1 |
| chr1_3 | exon | 14013899 | 14013997 | 14013899 | ID=Msa0105480-mRNA-1:exon:5495;Parent=Msa0105480-mRNA-1 |
| chr1_3 | exon | 14014431 | 14014514 | 14014431 | ID=Msa0105480-mRNA-1:exon:5496;Parent=Msa0105480-mRNA-1 |
| chr1_3 | exon | 14015247 | 14015819 | 14015247 | ID=Msa0105480-mRNA-1:exon:5497;Parent=Msa0105480-mRNA-1 |
| chr1_3 | exon | 14016505 | 14016800 | 14016505 | ID=Msa0105480-mRNA-1:exon:5498;Parent=Msa0105480-mRNA-1 |
| chr1_3 | five_prime_UTR | 14010880 | 14010973 | 14010880 | ID=Msa0105480-mRNA-1:five_prime_utr;Parent=Msa0105480-mRNA-1 |
| chr1_3 | CDS | 14010974 | 14011117 | 14010974 | ID=Msa0105480-mRNA-1:cds;Parent=Msa0105480-mRNA-1 |
| chr1_3 | CDS | 14011216 | 14011359 | 14011216 | ID=Msa0105480-mRNA-1:cds;Parent=Msa0105480-mRNA-1 |
| chr1_3 | CDS | 14012619 | 14012777 | 14012619 | ID=Msa0105480-mRNA-1:cds;Parent=Msa0105480-mRNA-1 |
| chr1_3 | CDS | 14013899 | 14013997 | 14013899 | ID=Msa0105480-mRNA-1:cds;Parent=Msa0105480-mRNA-1 |
| chr1_3 | CDS | 14014431 | 14014514 | 14014431 | ID=Msa0105480-mRNA-1:cds;Parent=Msa0105480-mRNA-1 |
| chr1_3 | CDS | 14015247 | 14015819 | 14015247 | ID=Msa0105480-mRNA-1:cds;Parent=Msa0105480-mRNA-1 |
| chr1_3 | CDS | 14016505 | 14016597 | 14016505 | ID=Msa0105480-mRNA-1:cds;Parent=Msa0105480-mRNA-1 |
| chr1_3 | three_prime_UTR | 14016598 | 14016800 | 14016598 | ID=Msa0105480-mRNA-1:three_prime_utr;Parent=Msa0105480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
