AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1456180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456180 MtrunA17_Chr4g0042711 97.819 321 7 0 1 321 187 507 0.0 662
Msa1456180 MtrunA17_Chr5g0417871 82.188 320 57 0 1 320 175 494 0.0 571
Msa1456180 MtrunA17_Chr6g0455571 66.887 302 100 0 1 302 206 507 3.24e-156 447
Msa1456180 MtrunA17_Chr2g0307971 64.217 313 111 1 1 313 206 517 5.45e-151 434
Msa1456180 MtrunA17_Chr4g0061781 66.225 302 102 0 1 302 207 508 3.19e-150 432
Msa1456180 MtrunA17_Chr4g0008451 49.191 309 153 4 1 307 319 625 3.01e-104 318
Msa1456180 MtrunA17_Chr5g0426591 48.867 309 150 3 3 303 203 511 2.97e-103 312
Msa1456180 MtrunA17_Chr5g0436321 48.366 306 154 4 1 304 248 551 1.27e-102 311
Msa1456180 MtrunA17_Chr4g0070551 48.366 306 154 4 1 304 315 618 9.03e-101 308
Msa1456180 MtrunA17_Chr3g0132371 46.926 309 156 3 3 303 230 538 6.09e-95 291
Msa1456180 MtrunA17_Chr3g0129981 46.945 311 155 5 2 303 202 511 9.25e-95 290
Msa1456180 MtrunA17_Chr3g0143821 42.574 303 160 6 6 306 205 495 3.73e-73 236
Msa1456180 MtrunA17_Chr5g0448581 42.767 318 164 8 8 319 214 519 2.53e-72 234
Msa1456180 MtrunA17_Chr5g0399311 40.193 311 171 8 5 313 218 515 1.27e-67 220
Msa1456180 MtrunA17_Chr4g0056061 38.312 308 177 6 5 311 202 497 2.13e-66 217
Msa1456180 MtrunA17_Chr7g0240241 77.419 124 24 1 70 189 1 124 9.52e-63 195
Msa1456180 MtrunA17_Chr1g0204121 38.462 312 167 10 1 306 185 477 1.11e-62 207
Msa1456180 MtrunA17_Chr5g0412251 35.562 329 172 6 5 305 187 503 1.25e-60 201
Msa1456180 MtrunA17_Chr3g0123521 37.193 285 166 4 4 278 247 528 9.07e-59 197
Msa1456180 MtrunA17_Chr3g0132951 35.077 325 171 6 9 305 205 517 8.68e-58 194
Msa1456180 MtrunA17_Chr4g0075311 37.202 336 160 10 9 303 266 591 9.42e-58 196
Msa1456180 MtrunA17_Chr4g0043911 34.268 321 187 9 3 310 245 554 1.97e-56 191
Msa1456180 MtrunA17_Chr1g0204141 36.508 315 172 10 1 306 185 480 2.25e-54 185
Msa1456180 MtrunA17_Chr2g0284071 35.928 334 165 9 10 304 318 641 2.65e-54 187
Msa1456180 MtrunA17_Chr5g0424241 35.220 318 179 9 3 303 252 559 8.95e-53 182
Msa1456180 MtrunA17_Chr4g0010511 36.496 274 165 4 38 309 356 622 1.43e-51 179
Msa1456180 MtrunA17_Chr1g0160781 33.651 315 185 8 5 306 246 549 1.82e-51 178
Msa1456180 MtrunA17_Chr3g0087291 34.641 306 185 6 3 306 267 559 2.93e-51 177
Msa1456180 MtrunA17_Chr3g0077321 33.856 319 179 10 3 304 242 545 5.36e-51 177
Msa1456180 MtrunA17_Chr4g0003561 31.321 265 165 7 10 271 171 421 1.16e-32 125
Msa1456180 MtrunA17_Chr3g0127811 32.843 204 123 4 1 193 145 345 6.81e-29 115
Msa1456180 MtrunA17_Chr1g0146501 32.843 204 123 4 1 193 185 385 1.36e-28 115
Msa1456180 MtrunA17_Chr7g0220381 32.447 188 111 4 9 184 201 384 7.70e-25 105
Msa1456180 MtrunA17_Chr1g0172911 59.574 47 19 0 26 72 83 129 1.59e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456180 AT1G14020.1 76.489 319 75 0 1 319 181 499 0.0 532
Msa1456180 AT2G03280.1 72.607 303 82 1 1 302 178 480 8.35e-170 481
Msa1456180 AT2G03280.2 72.607 303 82 1 1 302 205 507 1.79e-169 481
Msa1456180 AT5G15740.1 62.914 302 112 0 1 302 197 498 3.34e-145 419
Msa1456180 AT3G02250.1 62.583 302 113 0 1 302 197 498 1.95e-142 412
Msa1456180 AT2G37980.1 47.368 323 166 4 1 321 313 633 1.43e-104 319
Msa1456180 AT3G54100.1 47.604 313 160 4 1 311 309 619 5.16e-102 313
Msa1456180 AT5G35570.1 47.771 314 160 4 1 312 338 649 6.86e-99 305
Msa1456180 AT5G64600.1 47.910 311 152 5 2 303 205 514 4.72e-98 299
Msa1456180 AT5G01100.1 45.659 311 164 4 1 307 303 612 3.17e-94 292
Msa1456180 AT1G22460.1 45.161 310 162 3 3 304 249 558 2.89e-92 285
Msa1456180 AT1G76270.1 43.934 305 157 6 6 308 199 491 1.34e-77 248
Msa1456180 AT1G20550.1 42.994 314 165 6 6 317 202 503 3.82e-77 246
Msa1456180 AT4G38390.1 43.522 301 156 7 10 308 222 510 8.20e-75 240
Msa1456180 AT4G16650.2 41.528 301 163 7 5 304 216 504 1.65e-69 226
Msa1456180 AT4G16650.1 41.528 301 163 7 5 304 216 504 1.65e-69 226
Msa1456180 AT3G26370.1 36.491 285 168 4 4 278 255 536 1.96e-59 199
Msa1456180 AT4G24530.1 35.843 332 172 7 1 304 199 517 6.08e-59 197
Msa1456180 AT1G11990.1 40.323 310 161 9 9 305 292 590 4.52e-58 197
Msa1456180 AT5G65470.1 33.435 329 177 6 5 303 186 502 1.06e-57 194
Msa1456180 AT1G04910.1 35.692 325 188 8 1 320 185 493 1.13e-57 194
Msa1456180 AT1G62330.1 34.030 335 173 7 9 303 323 649 1.25e-56 194
Msa1456180 AT1G29200.3 36.036 333 165 9 10 304 98 420 3.26e-56 188
Msa1456180 AT1G29200.4 36.036 333 165 9 10 304 172 494 1.01e-55 188
Msa1456180 AT1G29200.1 36.036 333 165 9 10 304 172 494 1.01e-55 188
Msa1456180 AT5G63390.1 38.929 280 161 5 30 307 281 552 2.92e-55 189
Msa1456180 AT1G29200.2 36.036 333 165 9 10 304 288 610 7.26e-55 189
Msa1456180 AT1G38065.2 35.220 318 179 9 3 303 121 428 1.42e-53 182
Msa1456180 AT1G38065.1 35.220 318 179 9 3 303 131 438 1.78e-53 182
Msa1456180 AT1G11990.2 36.311 347 160 9 9 305 277 612 3.37e-53 184
Msa1456180 AT1G38131.1 35.220 318 179 9 3 303 250 557 1.65e-52 182
Msa1456180 AT2G44500.1 36.242 298 176 6 9 304 277 562 3.74e-52 181
Msa1456180 AT3G07900.1 35.821 268 163 4 38 303 312 572 1.02e-51 179
Msa1456180 AT2G01480.1 36.131 274 156 6 3 263 249 516 1.80e-51 179
Msa1456180 AT2G01480.2 36.641 262 150 5 3 251 249 507 8.91e-51 176
Msa1456180 AT1G35510.1 32.808 317 185 9 3 304 254 557 3.52e-50 175
Msa1456180 AT1G14970.3 32.075 318 192 9 3 307 104 410 1.81e-48 167
Msa1456180 AT1G14970.2 32.075 318 192 9 3 307 130 436 3.51e-48 167
Msa1456180 AT1G14970.1 32.075 318 192 9 3 307 250 556 1.92e-47 168
Msa1456180 AT3G03810.2 36.318 201 120 4 1 193 184 384 2.18e-31 124
Msa1456180 AT3G03810.1 36.318 201 120 4 1 193 184 384 2.18e-31 124
Msa1456180 AT1G52630.2 28.679 265 174 7 10 273 82 332 1.50e-30 118
Msa1456180 AT1G52630.1 28.679 265 174 7 10 273 170 420 2.86e-30 119
Msa1456180 AT3G30300.2 34.000 200 116 4 5 192 199 394 5.38e-27 111
Msa1456180 AT3G30300.1 34.000 200 116 4 5 192 199 394 5.38e-27 111
Msa1456180 AT2G44500.2 38.806 134 75 3 9 140 277 405 5.35e-19 87.4
Msa1456180 AT3G26370.2 34.234 111 69 1 4 110 255 365 1.67e-16 80.1

Find 214 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTTCCAAATTCAATTTA+TGG 0.093891 tig0036981:+21072 Msa1456170:intron
TCTGATCCATAAATTGAATT+TGG 0.134329 tig0036981:-21078 Msa1456180:three_prime_UTR
TTGATCATCGTCCCCTTTAA+AGG 0.157833 tig0036981:-22559 Msa1456180:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 tig0036981:+22780 Msa1456170:three_prime_UTR
CCATCTGTGATGAATGATTT+TGG 0.203102 tig0036981:+23501 None:intergenic
AAAGTTCTGCTGCAACTTTC+TGG 0.203760 tig0036981:-21429 Msa1456180:three_prime_UTR
AAAACAAGTAAGACTCAATT+TGG 0.224842 tig0036981:-20997 Msa1456180:three_prime_UTR
ATTGCAGCCGGTGAGATTTA+TGG 0.227102 tig0036981:-23875 Msa1456180:CDS
GGGTACCGATGCTTTCTTAT+TGG 0.244903 tig0036981:+21811 Msa1456170:CDS
TCAGATATGCATTCCCTTCA+TGG 0.261168 tig0036981:-24015 Msa1456180:intron
GATGGCTGCTTTGGATTTCA+TGG 0.269401 tig0036981:-23483 Msa1456180:CDS
TGCATTCAATCAACCTTTAA+AGG 0.269412 tig0036981:+22546 Msa1456170:three_prime_UTR
AGATTGCTCTTGCATACTTA+TGG 0.269547 tig0036981:+22958 Msa1456170:three_prime_UTR
CACCCCTCAAATTGAGAATC+TGG 0.293410 tig0036981:-24412 Msa1456180:CDS
TGCTTTGGATTTCATGGTTT+CGG 0.294885 tig0036981:-23477 Msa1456180:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 tig0036981:+22415 Msa1456170:exon
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 tig0036981:-21924 Msa1456180:three_prime_UTR
TTCATCACAGATGGCTGCTT+TGG 0.305983 tig0036981:-23492 Msa1456180:CDS
TTTGGATTAGTTTCTACCTT+TGG 0.313005 tig0036981:-20979 Msa1456180:three_prime_UTR
TTGCTTGATATGCATCAAAA+TGG 0.313563 tig0036981:-23222 Msa1456180:CDS
CATCTTTGCAAGCCTCTATA+TGG 0.317158 tig0036981:+22835 Msa1456170:three_prime_UTR
CTTTCTGGCTCTGATACATT+TGG 0.328912 tig0036981:-21414 Msa1456180:three_prime_UTR
CTAAGTTTCTGTAGATCAAT+TGG 0.331955 tig0036981:+24465 None:intergenic
GCTTTCTCAGGTTGTACTCT+TGG 0.343079 tig0036981:-24312 Msa1456180:CDS
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 tig0036981:+21596 Msa1456170:CDS
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 tig0036981:-22950 Msa1456180:three_prime_UTR
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 tig0036981:+21923 Msa1456170:CDS
TAGAAATAATCCTCCTCCTT+TGG 0.360561 tig0036981:+23105 Msa1456170:three_prime_UTR
TAGCGCTCATGCAGGTATTC+CGG 0.363730 tig0036981:-23288 Msa1456180:intron
AACAACAGTATGTCATTAAC+TGG 0.364991 tig0036981:-22449 Msa1456180:three_prime_UTR
CACTGTTCAGAGACTCCATC+TGG 0.373117 tig0036981:+21837 Msa1456170:CDS
GCATTCAATCAACCTTTAAA+GGG 0.374835 tig0036981:+22547 Msa1456170:three_prime_UTR
TGCTCTTGCATACTTATGGT+TGG 0.387006 tig0036981:+22962 Msa1456170:three_prime_UTR
ACCTTTATTCCTACCTATGA+TGG 0.388352 tig0036981:-23443 Msa1456180:CDS
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 tig0036981:+22305 Msa1456170:CDS
GCTCTTGCATACTTATGGTT+GGG 0.392646 tig0036981:+22963 Msa1456170:three_prime_UTR
ATGGACATGCTGGCTTTCTC+AGG 0.395187 tig0036981:-24324 Msa1456180:CDS
TGCCCCAGATTCTCAATTTG+AGG 0.396144 tig0036981:+24408 None:intergenic
TCACATGCGTTCACCGTAGA+AGG 0.396385 tig0036981:-22523 Msa1456180:three_prime_UTR
TTCTGTCAAGGCAGGAGAAC+AGG 0.398267 tig0036981:+21204 Msa1456170:CDS
CCATCTTATTGGACCGGAAA+AGG 0.405140 tig0036981:-23254 Msa1456180:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 tig0036981:-22610 Msa1456180:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 tig0036981:+22363 Msa1456170:CDS
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 tig0036981:+22354 Msa1456170:CDS
TATGCATATCGATCTGCATT+TGG 0.408825 tig0036981:-21629 Msa1456180:three_prime_UTR
TTCTCCTGCCTTGACAGAAA+GGG 0.411526 tig0036981:-21200 Msa1456180:three_prime_UTR
TACAAGCTGCAGGCATGTAA+TGG 0.411895 tig0036981:-22611 Msa1456180:three_prime_UTR
CTGAAAATGGCTCCTTCCCT+CGG 0.419876 tig0036981:-22937 Msa1456180:three_prime_UTR
AGTGCTACTAATCTCAGATA+TGG 0.428804 tig0036981:-21785 Msa1456180:three_prime_UTR
GCCTTGGTTATGCAAGCCTT+AGG 0.432969 tig0036981:-23923 Msa1456180:CDS
CCCATCATAGGTAGGAATAA+AGG 0.436770 tig0036981:+23442 None:intergenic
GAGAGTTTCTCAATTAAAAC+CGG 0.439868 tig0036981:-20957 Msa1456180:three_prime_UTR
TTTCCTTGATATGGAAGAGC+TGG 0.441012 tig0036981:-21371 Msa1456180:three_prime_UTR
TTTCTTGATAATATTCCAAC+TGG 0.444121 tig0036981:-22335 Msa1456180:three_prime_UTR
AGGAAATAGTGTCTGAAGAA+AGG 0.445827 tig0036981:-23985 Msa1456180:CDS
CTTAAGAACATTAACTGATC+TGG 0.447455 tig0036981:-20794 Msa1456180:three_prime_UTR
GATTTCATGGTTTCGGTAGC+CGG 0.450519 tig0036981:-23470 Msa1456180:CDS
GGAACTGCTGTAACTCATCA+AGG 0.452325 tig0036981:+23522 None:intergenic
AAAAGTCCATCTTATTGGAC+CGG 0.458534 tig0036981:-23260 Msa1456180:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 tig0036981:-21957 Msa1456180:intron
GAAGTGCACCACCTTGTGTT+TGG 0.463947 tig0036981:+24524 None:intergenic
GTTCTCCTGCCTTGACAGAA+AGG 0.468467 tig0036981:-21201 Msa1456180:three_prime_UTR
CTTACTTGAGTAGAGTTATG+AGG 0.468781 tig0036981:+23027 Msa1456170:three_prime_UTR
TTGGGAGACCATTATTTGCT+AGG 0.469220 tig0036981:+24484 None:intergenic
GTATGTGAAGGGTCGTAAAC+CGG 0.469247 tig0036981:+20938 Msa1456170:intron
GCCCCAGATTCTCAATTTGA+GGG 0.469715 tig0036981:+24409 None:intergenic
TAAGTTTCTGTAGATCAATT+GGG 0.475386 tig0036981:+24466 None:intergenic
AGATATGGAAGCATCCCTTC+TGG 0.477120 tig0036981:-21770 Msa1456180:three_prime_UTR
CTCCTCATTATCACGGCTCA+TGG 0.477204 tig0036981:-21876 Msa1456180:three_prime_UTR
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 tig0036981:+21589 Msa1456170:CDS
CTCCATCTGGGGTCATCTTG+AGG 0.481584 tig0036981:+21850 Msa1456170:CDS
GAAATATATGTTCCATATAG+AGG 0.482623 tig0036981:-22847 Msa1456180:three_prime_UTR
ACCCCTCAAATTGAGAATCT+GGG 0.484445 tig0036981:-24411 Msa1456180:CDS
AAGAGGCAAATCTAGATTCA+AGG 0.484970 tig0036981:+22223 Msa1456170:CDS
TCAACATCTATTAGTTTACA+AGG 0.486967 tig0036981:+20906 Msa1456170:intron
GAGGGGTGAATTTAAGTGCC+TGG 0.487600 tig0036981:+24427 None:intergenic
GTCAAATGAAAAGTATTACT+TGG 0.489028 tig0036981:-24984 None:intergenic
CTCAGATGCAATGCCACAAA+AGG 0.490594 tig0036981:+24354 None:intergenic
ACAACTATACTGAATTTGGT+GGG 0.497845 tig0036981:+22784 Msa1456170:three_prime_UTR
GGGATTACCTATTTGCCCTA+AGG 0.498091 tig0036981:+21173 Msa1456170:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 tig0036981:+21583 Msa1456170:CDS
ATTTCCTTCTCTCTCCATGA+AGG 0.500444 tig0036981:+24001 None:intergenic
GATGCACGCCTAGCAAATAA+TGG 0.504541 tig0036981:-24492 Msa1456180:CDS
ATAACCAAGGCAGTCTCCTC+CGG 0.505709 tig0036981:+23935 None:intergenic
CAATTGATCTACAGAAACTT+AGG 0.505738 tig0036981:-24464 Msa1456180:CDS
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 tig0036981:-23163 Msa1456180:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 tig0036981:+22617 Msa1456170:three_prime_UTR
CCGAGGATCTCAAGCGGATG+AGG 0.509548 tig0036981:-24272 Msa1456180:intron
TAGCCAGCTCTTCCATATCA+AGG 0.509727 tig0036981:+21368 Msa1456170:intron
TATGCATACACCTTGACACT+GGG 0.512341 tig0036981:+21644 Msa1456170:CDS
GTCTGAAGAAAGGAGATCCC+AGG 0.512801 tig0036981:-23975 Msa1456180:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 tig0036981:+22783 Msa1456170:three_prime_UTR
GCAGTCTCCTCCGGTGTCAA+AGG 0.517244 tig0036981:+23944 None:intergenic
GTGTCAAAGGACATAGACCC+TGG 0.517880 tig0036981:+23957 None:intergenic
TGGGTTGTAATAATTGTGGC+CGG 0.524912 tig0036981:-22591 Msa1456180:three_prime_UTR
CACATTCATAACTGTGCAGT+TGG 0.525016 tig0036981:+21525 Msa1456170:intron
GACACCGGAGGAGACTGCCT+TGG 0.525025 tig0036981:-23939 Msa1456180:CDS
GCATCTACAAACTCATTCCA+TGG 0.525256 tig0036981:+23192 Msa1456170:three_prime_UTR
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 tig0036981:-21764 Msa1456180:three_prime_UTR
GCCCATGAGCCGTGATAATG+AGG 0.527832 tig0036981:+21874 Msa1456170:CDS
TGAAAATGGCTCCTTCCCTC+GGG 0.528010 tig0036981:-22936 Msa1456180:three_prime_UTR
ATCTGAGATTAGTAGCACTA+GGG 0.531413 tig0036981:+21789 Msa1456170:CDS
TCTCCTGCCTTGACAGAAAG+GGG 0.533728 tig0036981:-21199 Msa1456180:three_prime_UTR
CCTCATCCGCTTGAGATCCT+CGG 0.534275 tig0036981:+24272 None:intergenic
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 tig0036981:-23181 Msa1456180:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 tig0036981:+22372 Msa1456170:CDS
CCTTTATTCCTACCTATGAT+GGG 0.535492 tig0036981:-23442 Msa1456180:CDS
AGTTGGAATATTATCAAGAA+AGG 0.536592 tig0036981:+22337 Msa1456170:CDS
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 tig0036981:+22510 Msa1456170:three_prime_UTR
AGAATTGGAACTAGACCAGT+TGG 0.537321 tig0036981:+22320 Msa1456170:CDS
TGAAAAGTATTACTTGGAGC+AGG 0.539964 tig0036981:-24978 Msa1456180:CDS
CCAAAATCATTCATCACAGA+TGG 0.542359 tig0036981:-23501 Msa1456180:CDS
TCCTCATTATCACGGCTCAT+GGG 0.543503 tig0036981:-21875 Msa1456180:three_prime_UTR
TGTCTCCCGGTCAAAACCTA+AGG 0.543702 tig0036981:+23907 None:intergenic
AACTATACTGAATTTGGTGG+GGG 0.544382 tig0036981:+22786 Msa1456170:three_prime_UTR
TATGAAGTCAAAGGACCAGC+TGG 0.544591 tig0036981:+21139 Msa1456170:CDS
CTACAAACTCATTCCATGGA+AGG 0.551044 tig0036981:+23196 Msa1456170:three_prime_UTR
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 tig0036981:+22206 Msa1456170:intron
TTGCGCCTCAGAATACAGCT+TGG 0.551987 tig0036981:-21457 Msa1456180:three_prime_UTR
CACCTCAAGATGACCCCAGA+TGG 0.552036 tig0036981:-21852 Msa1456180:three_prime_UTR
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 tig0036981:-21154 Msa1456180:three_prime_UTR
CCCCAGATTCTCAATTTGAG+GGG 0.555415 tig0036981:+24410 None:intergenic
GAGATATGAGATGGACATGC+TGG 0.557518 tig0036981:-24334 Msa1456180:CDS
ACTGTTCAGAGACTCCATCT+GGG 0.560536 tig0036981:+21838 Msa1456170:CDS
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 tig0036981:-23162 Msa1456180:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 tig0036981:-23209 Msa1456180:CDS
GAAAACCCCTCGGATGGACA+TGG 0.562273 tig0036981:-21302 Msa1456180:three_prime_UTR
CAATGTAAATCTGTGTCTCC+CGG 0.564211 tig0036981:+23894 None:intergenic
TTTCCTTCTCTCTCCATGAA+GGG 0.565721 tig0036981:+24002 None:intergenic
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 tig0036981:-23076 Msa1456180:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 tig0036981:+22785 Msa1456170:three_prime_UTR
ATGAAAAGAAACATATGAAG+AGG 0.574782 tig0036981:-21240 Msa1456180:three_prime_UTR
ACACAGATTTACATTGCAGC+CGG 0.575721 tig0036981:-23887 Msa1456180:CDS
GGGTCTATGTCCTTTGACAC+CGG 0.576261 tig0036981:-23954 Msa1456180:CDS
ACAATGATTCGACGATAAGT+CGG 0.577569 tig0036981:+23135 Msa1456170:three_prime_UTR
TATAACCGCCCTCTTCCAGA+AGG 0.578293 tig0036981:+21755 Msa1456170:CDS
CTCTAAGAACTTATGCCCGA+GGG 0.578429 tig0036981:+22921 Msa1456170:three_prime_UTR
TGGGAACATGGCAAAACTTG+TGG 0.580054 tig0036981:-23423 Msa1456180:CDS
ATGATCATCTGTAGTCACTC+TGG 0.581191 tig0036981:-21113 Msa1456180:three_prime_UTR
GATCATGCTTATGAAGTCAA+AGG 0.581508 tig0036981:+21130 Msa1456170:CDS
TAGGTGCCGTGTTAATTACC+AGG 0.582283 tig0036981:-24445 Msa1456180:CDS
ACCGTCGAAAACCCCTCGGA+TGG 0.582332 tig0036981:-21308 Msa1456180:three_prime_UTR
AGATCTCATCAATTTGCCGC+AGG 0.582417 tig0036981:-22287 Msa1456180:three_prime_UTR
GATTCAGATACTTCGCGAGA+GGG 0.583952 tig0036981:-24379 Msa1456180:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 tig0036981:+21788 Msa1456170:CDS
GTTCATTCTCTATGTAATCA+CGG 0.584697 tig0036981:-22712 Msa1456180:three_prime_UTR
ATATGCATACACCTTGACAC+TGG 0.586569 tig0036981:+21643 Msa1456170:CDS
TGTAGACAAACCAAAGGAGG+AGG 0.587728 tig0036981:-23115 Msa1456180:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 tig0036981:-21654 Msa1456180:three_prime_UTR
TACAAACTCATTCCATGGAA+GGG 0.592326 tig0036981:+23197 Msa1456170:three_prime_UTR
GGTAGGAATAAAGGTGTCAC+CGG 0.594798 tig0036981:+23451 None:intergenic
ACAAAGGCACTCATGAGGGT+TGG 0.596296 tig0036981:+23080 Msa1456170:three_prime_UTR
CCCTCACAAAGGCACTCATG+AGG 0.597403 tig0036981:+23075 Msa1456170:three_prime_UTR
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 tig0036981:+22253 Msa1456170:CDS
AAGAACTTATGCCCGAGGGA+AGG 0.599553 tig0036981:+22925 Msa1456170:three_prime_UTR
GCAATCCAAGCTGTATTCTG+AGG 0.600078 tig0036981:+21452 Msa1456170:intron
GTAGACGTTGCTGAGACCAA+TGG 0.600772 tig0036981:+21701 Msa1456170:CDS
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 tig0036981:+22240 Msa1456170:CDS
CACACTTTGTTCCCTCACAA+AGG 0.600880 tig0036981:+23064 Msa1456170:three_prime_UTR
AACTTGTGGAAGGCCACCGC+AGG 0.602466 tig0036981:-23409 Msa1456180:intron
CCTCACAAAGGCACTCATGA+GGG 0.602588 tig0036981:+23076 Msa1456170:three_prime_UTR
TGGAATATTATCAAGAAAGG+AGG 0.602703 tig0036981:+22340 Msa1456170:CDS
GCCATGTTCCCATCATAGGT+AGG 0.602990 tig0036981:+23434 None:intergenic
CCCCTCAAATTGAGAATCTG+GGG 0.605300 tig0036981:-24410 Msa1456180:CDS
CTCCTGCCTTGACAGAAAGG+GGG 0.606795 tig0036981:-21198 Msa1456180:three_prime_UTR
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 tig0036981:+22252 Msa1456170:CDS
AACATGGCAAAACTTGTGGA+AGG 0.609196 tig0036981:-23419 Msa1456180:CDS
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 tig0036981:-23075 Msa1456180:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 tig0036981:+22347 Msa1456170:CDS
TCCTACCTATGATGGGAACA+TGG 0.610654 tig0036981:-23435 Msa1456180:CDS
TCTCTAAGAACTTATGCCCG+AGG 0.611187 tig0036981:+22920 Msa1456170:three_prime_UTR
GGGTTGTAATAATTGTGGCC+GGG 0.612240 tig0036981:-22590 Msa1456180:three_prime_UTR
TTAATTGAGAAACTCTCCAA+AGG 0.612466 tig0036981:+20963 Msa1456170:intron
ACAAAGTGTGATGATTTGCT+AGG 0.614058 tig0036981:-23051 Msa1456180:CDS
CATTGTAGACAAACCAAAGG+AGG 0.615228 tig0036981:-23118 Msa1456180:CDS
TTCACCACCATAAATCTCAC+CGG 0.615230 tig0036981:+23868 None:intergenic
ATACATCCATGTCCATCCGA+GGG 0.616731 tig0036981:+21296 Msa1456170:intron
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 tig0036981:+22463 Msa1456170:three_prime_UTR
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 tig0036981:+22384 Msa1456170:CDS
CATTCAATCAACCTTTAAAG+GGG 0.622188 tig0036981:+22548 Msa1456170:three_prime_UTR
TCCTACCGTCGAAAACCCCT+CGG 0.622954 tig0036981:-21312 Msa1456180:three_prime_UTR
AATACATCCATGTCCATCCG+AGG 0.624955 tig0036981:+21295 Msa1456170:intron
ACCTAAGGCTTGCATAACCA+AGG 0.627242 tig0036981:+23922 None:intergenic
GGTTGTGTGATAACCAGCAA+GGG 0.628035 tig0036981:-21936 Msa1456180:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 tig0036981:-21937 Msa1456180:three_prime_UTR
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 tig0036981:+22254 Msa1456170:CDS
AATCATTGTAGACAAACCAA+AGG 0.637419 tig0036981:-23121 Msa1456180:CDS
ATTCAGATACTTCGCGAGAG+GGG 0.637675 tig0036981:-24378 Msa1456180:CDS
GAACTGCTGTAACTCATCAA+GGG 0.638982 tig0036981:+23523 None:intergenic
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 tig0036981:-21763 Msa1456180:three_prime_UTR
ATACTAGCTCCTCATTATCA+CGG 0.640006 tig0036981:-21883 Msa1456180:three_prime_UTR
TCTGAAGAAAGGAGATCCCA+GGG 0.644505 tig0036981:-23974 Msa1456180:CDS
TGTCAAAGGACATAGACCCT+GGG 0.644623 tig0036981:+23958 None:intergenic
CTGTAGTCACTCTGGCACTG+TGG 0.648083 tig0036981:-21105 Msa1456180:three_prime_UTR
TGATTCAGATACTTCGCGAG+AGG 0.649037 tig0036981:-24380 Msa1456180:CDS
ATTCCCTTCATGGAGAGAGA+AGG 0.650807 tig0036981:-24005 Msa1456180:CDS
GTAATGGGTTGTAATAATTG+TGG 0.651529 tig0036981:-22595 Msa1456180:three_prime_UTR
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 tig0036981:+21756 Msa1456170:CDS
TGATTCCAATAAGAAAGCAT+CGG 0.654051 tig0036981:-21816 Msa1456180:three_prime_UTR
TAAGTGCCTGGTAATTAACA+CGG 0.657828 tig0036981:+24439 None:intergenic
TTGCACTAATGAAGAAGCCG+AGG 0.669813 tig0036981:-24289 Msa1456180:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 tig0036981:+21790 Msa1456170:CDS
CTGTTCAGAGACTCCATCTG+GGG 0.675062 tig0036981:+21839 Msa1456170:CDS
TGTGTGATAACCAGCAAGGG+CGG 0.678647 tig0036981:-21933 Msa1456180:three_prime_UTR
AAGAAGCCGAGGATCTCAAG+CGG 0.678663 tig0036981:-24278 Msa1456180:CDS
ATTGCATCTGAGATATGAGA+TGG 0.683390 tig0036981:-24343 Msa1456180:CDS
ATGCATACACCTTGACACTG+GGG 0.698561 tig0036981:+21645 Msa1456170:CDS
TCTATGTCCTTTGACACCGG+AGG 0.698582 tig0036981:-23951 Msa1456180:CDS
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 tig0036981:-21760 Msa1456180:three_prime_UTR
TACATCCATGTCCATCCGAG+GGG 0.708677 tig0036981:+21297 Msa1456170:intron
GCAGCCGGTGAGATTTATGG+TGG 0.721413 tig0036981:-23872 Msa1456180:CDS
GAGTAAATAGATACCTGCGG+TGG 0.724695 tig0036981:+23396 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 tig0036981:+21791 Msa1456170:CDS
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 tig0036981:+21892 Msa1456170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGATATATATTTCTTT+TGG + tig0036981:22455-22474 Msa1456170:three_prime_UTR 10.0%
!! TGAAAAGATATACATAAAAA+AGG + tig0036981:21542-21561 Msa1456170:intron 15.0%
!!! ATATTTCTTTTGGAAATTTA+GGG + tig0036981:22445-22464 Msa1456170:three_prime_UTR 15.0%
!!! TATATTTCTTTTGGAAATTT+AGG + tig0036981:22446-22465 Msa1456170:three_prime_UTR 15.0%
!!! TTTTGTATACATTATTTTGT+AGG - tig0036981:22866-22885 Msa1456180:three_prime_UTR 15.0%
!! TTATGTATAATACATCAATC+AGG - tig0036981:20859-20878 Msa1456180:three_prime_UTR 20.0%
!!! TTTAGAGTTATTATCAGATA+TGG - tig0036981:20961-20980 Msa1456180:three_prime_UTR 20.0%
!!! AAAAGTACAAGTTTATGATA+TGG - tig0036981:21027-21046 Msa1456180:three_prime_UTR 20.0%
!!! TAGTATTTTAGCAACTAAAA+TGG - tig0036981:21058-21077 Msa1456180:three_prime_UTR 20.0%
!! ATATGTACTACTGAAAATAA+GGG + tig0036981:21172-21191 Msa1456170:CDS 20.0%
!! TATATGTACTACTGAAAATA+AGG + tig0036981:21173-21192 Msa1456170:CDS 20.0%
!! TCAATACTATAAACAAAAAG+GGG + tig0036981:21985-22004 Msa1456170:intron 20.0%
!! GTCAATACTATAAACAAAAA+GGG + tig0036981:21986-22005 Msa1456170:intron 20.0%
!! TGTCAATACTATAAACAAAA+AGG + tig0036981:21987-22006 Msa1456170:intron 20.0%
!!! TTTACTTTAGGTTAAAAAAG+AGG - tig0036981:22207-22226 Msa1456180:three_prime_UTR 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG - tig0036981:22497-22516 Msa1456180:three_prime_UTR 20.0%
!! TTATACAACTATACTGAATT+TGG + tig0036981:22985-23004 Msa1456170:three_prime_UTR 20.0%
!! TGTAATGAAATATATAGACA+CGG - tig0036981:23713-23732 Msa1456180:intron 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG - tig0036981:24191-24210 Msa1456180:intron 20.0%
!! ACATTTCCAAATTCAATTTA+TGG + tig0036981:24693-24712 None:intergenic 20.0%
!!! TCATTTTCATTTTTTGTTGA+AGG - tig0036981:24712-24731 Msa1456180:intron 20.0%
!!! GTCAAATGAAAAGTATTACT+TGG - tig0036981:20796-20815 Msa1456180:three_prime_UTR 25.0%
! TTAAAGTTTGATACAGTGAT+TGG - tig0036981:20901-20920 Msa1456180:three_prime_UTR 25.0%
! TGGTTAATGATTCTTTGATA+TGG - tig0036981:20921-20940 Msa1456180:three_prime_UTR 25.0%
!!! AACATAGATAAAGTGCTTTT+TGG + tig0036981:21113-21132 Msa1456170:CDS 25.0%
! TAAGTTTCTGTAGATCAATT+GGG + tig0036981:21299-21318 Msa1456170:intron 25.0%
!! TATATCTTTTCATGAGCAAT+AGG - tig0036981:21550-21569 Msa1456180:three_prime_UTR 25.0%
! GCAACACAAATTATAAAAGA+AGG + tig0036981:21577-21596 Msa1456170:CDS 25.0%
! CAATACTATAAACAAAAAGG+GGG + tig0036981:21984-22003 Msa1456170:intron 25.0%
! ATTCCACTTTACTTTACTTT+AGG - tig0036981:22195-22214 Msa1456180:intron 25.0%
! TAACCTAAAGTAAAGTAAAG+TGG + tig0036981:22201-22220 Msa1456170:intron 25.0%
!! TTAGGTTAAAAAAGAGGTAT+TGG - tig0036981:22213-22232 Msa1456180:three_prime_UTR 25.0%
! ATCTAATATAGAAGCTATTC+TGG - tig0036981:22406-22425 Msa1456180:three_prime_UTR 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG + tig0036981:22496-22515 Msa1456170:three_prime_UTR 25.0%
!!! ATTATTTTGTAGGAAACCAT+GGG - tig0036981:22876-22895 Msa1456180:three_prime_UTR 25.0%
! GAAATATATGTTCCATATAG+AGG - tig0036981:22915-22934 Msa1456180:three_prime_UTR 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG - tig0036981:23352-23371 Msa1456180:intron 25.0%
! AGTTGGAATATTATCAAGAA+AGG + tig0036981:23428-23447 None:intergenic 25.0%
!! TTTCTTGATAATATTCCAAC+TGG - tig0036981:23427-23446 Msa1456180:CDS 25.0%
! GGTAATAAACTATACATTCA+GGG + tig0036981:23798-23817 None:intergenic 25.0%
! AGGTAATAAACTATACATTC+AGG + tig0036981:23799-23818 None:intergenic 25.0%
! ATAGTTTATTACCTGTTCAA+TGG - tig0036981:23805-23824 Msa1456180:intron 25.0%
! ATGAAAAGAAACATATGAAG+AGG - tig0036981:24522-24541 Msa1456180:CDS 25.0%
! TCTGATCCATAAATTGAATT+TGG - tig0036981:24684-24703 Msa1456180:intron 25.0%
!! TTTTTGTTGAAGGATATTGA+TGG - tig0036981:24722-24741 Msa1456180:intron 25.0%
!! TTTTGTTGAAGGATATTGAT+GGG - tig0036981:24723-24742 Msa1456180:intron 25.0%
! AAAACAAGTAAGACTCAATT+TGG - tig0036981:24765-24784 Msa1456180:intron 25.0%
!! TCAACATCTATTAGTTTACA+AGG + tig0036981:24859-24878 None:intergenic 25.0%
GTACAAGTTTATGATATGGA+TGG - tig0036981:21031-21050 Msa1456180:three_prime_UTR 30.0%
TACTACTGAAAATAAGGGAA+GGG + tig0036981:21167-21186 Msa1456170:CDS 30.0%
CTAAGTTTCTGTAGATCAAT+TGG + tig0036981:21300-21319 Msa1456170:intron 30.0%
CAATTGATCTACAGAAACTT+AGG - tig0036981:21298-21317 Msa1456180:three_prime_UTR 30.0%
! TAAAAAAGGCATAGCAAAAC+AGG + tig0036981:21528-21547 Msa1456170:intron 30.0%
!! GTTGCATGATTTGTTGAATT+TGG - tig0036981:21592-21611 Msa1456180:three_prime_UTR 30.0%
! ATTAAGAGTCTTGTGTTCAA+AGG - tig0036981:21659-21678 Msa1456180:three_prime_UTR 30.0%
! AATGGTGAACTCACAATTTT+TGG + tig0036981:21950-21969 Msa1456170:intron 30.0%
GGGAGGATACAAATTATAAA+TGG + tig0036981:22071-22090 Msa1456170:intron 30.0%
TTAGGATGAAGAAATGCATA+AGG + tig0036981:22150-22169 Msa1456170:intron 30.0%
TTGCTTGATATGCATCAAAA+TGG - tig0036981:22540-22559 Msa1456180:three_prime_UTR 30.0%
AATCATTGTAGACAAACCAA+AGG - tig0036981:22641-22660 Msa1456180:three_prime_UTR 30.0%
!! CATTATTTTGTAGGAAACCA+TGG - tig0036981:22875-22894 Msa1456180:three_prime_UTR 30.0%
!! TTATTTTGTAGGAAACCATG+GGG - tig0036981:22877-22896 Msa1456180:three_prime_UTR 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG + tig0036981:22895-22914 Msa1456170:three_prime_UTR 30.0%
CATGGGGAAAAAAGAAAAAT+AGG - tig0036981:22893-22912 Msa1456180:three_prime_UTR 30.0%
ACAACTATACTGAATTTGGT+GGG + tig0036981:22981-23000 Msa1456170:three_prime_UTR 30.0%
TACAACTATACTGAATTTGG+TGG + tig0036981:22982-23001 Msa1456170:three_prime_UTR 30.0%
GTTCATTCTCTATGTAATCA+CGG - tig0036981:23050-23069 Msa1456180:CDS 30.0%
!! GTAATGGGTTGTAATAATTG+TGG - tig0036981:23167-23186 Msa1456180:CDS 30.0%
! CATTCAATCAACCTTTAAAG+GGG + tig0036981:23217-23236 Msa1456170:three_prime_UTR 30.0%
GCATTCAATCAACCTTTAAA+GGG + tig0036981:23218-23237 Msa1456170:three_prime_UTR 30.0%
TGCATTCAATCAACCTTTAA+AGG + tig0036981:23219-23238 Msa1456170:three_prime_UTR 30.0%
AACAACAGTATGTCATTAAC+TGG - tig0036981:23313-23332 Msa1456180:intron 30.0%
CAAAATACTTCTAATCTTGC+AGG + tig0036981:23350-23369 None:intergenic 30.0%
TGGAATATTATCAAGAAAGG+AGG + tig0036981:23425-23444 None:intergenic 30.0%
! TTGCATTTTACGTAGTACAT+GGG + tig0036981:23647-23666 None:intergenic 30.0%
! ATTGCATTTTACGTAGTACA+TGG + tig0036981:23648-23667 None:intergenic 30.0%
TATTCTCATTACCATCATGT+TGG - tig0036981:23770-23789 Msa1456180:intron 30.0%
! TGATTCCAATAAGAAAGCAT+CGG - tig0036981:23946-23965 Msa1456180:CDS 30.0%
TCTACTTTGTCGTCAAAAAA+AGG - tig0036981:24079-24098 Msa1456180:intron 30.0%
CTACTTTGTCGTCAAAAAAA+GGG - tig0036981:24080-24099 Msa1456180:intron 30.0%
! TTTTCATGCTTCTCAATTCT+TGG + tig0036981:24264-24283 None:intergenic 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG - tig0036981:24382-24401 Msa1456180:CDS 30.0%
!! TTTGGATTAGTTTCTACCTT+TGG - tig0036981:24783-24802 Msa1456180:intron 30.0%
TTAATTGAGAAACTCTCCAA+AGG + tig0036981:24802-24821 None:intergenic 30.0%
GAGAGTTTCTCAATTAAAAC+CGG - tig0036981:24805-24824 Msa1456180:intron 30.0%
CTTAAGAACATTAACTGATC+TGG - tig0036981:24968-24987 Msa1456180:CDS 30.0%
! TTTTCATTTGACCAGCTAAC+AGG + tig0036981:20788-20807 Msa1456170:intron 35.0%
!! TGAAAAGTATTACTTGGAGC+AGG - tig0036981:20802-20821 Msa1456180:three_prime_UTR 35.0%
ACTACTGAAAATAAGGGAAG+GGG + tig0036981:21166-21185 Msa1456170:CDS 35.0%
GTACTACTGAAAATAAGGGA+AGG + tig0036981:21168-21187 Msa1456170:CDS 35.0%
TAAGTGCCTGGTAATTAACA+CGG + tig0036981:21326-21345 Msa1456170:intron 35.0%
! ATTGCATCTGAGATATGAGA+TGG - tig0036981:21419-21438 Msa1456180:three_prime_UTR 35.0%
GTAATGATCTGACAAATGAG+AGG - tig0036981:21687-21706 Msa1456180:three_prime_UTR 35.0%
AGGAAATAGTGTCTGAAGAA+AGG - tig0036981:21777-21796 Msa1456180:three_prime_UTR 35.0%
ACTATAAACAAAAAGGGGGA+GGG + tig0036981:21980-21999 Msa1456170:intron 35.0%
TACTATAAACAAAAAGGGGG+AGG + tig0036981:21981-22000 Msa1456170:intron 35.0%
!! AATCCAAGTGCTGAAAAATG+GGG + tig0036981:22091-22110 Msa1456170:intron 35.0%
!! CAATCCAAGTGCTGAAAAAT+GGG + tig0036981:22092-22111 Msa1456170:intron 35.0%
!! TCAATCCAAGTGCTGAAAAA+TGG + tig0036981:22093-22112 Msa1456170:intron 35.0%
GCATTTCTTCATCCTAATCA+TGG - tig0036981:22153-22172 Msa1456180:intron 35.0%
AACAAGCAGTAACCATGATT+AGG + tig0036981:22168-22187 Msa1456170:intron 35.0%
! CCATCTGTGATGAATGATTT+TGG + tig0036981:22264-22283 Msa1456170:CDS 35.0%
CCAAAATCATTCATCACAGA+TGG - tig0036981:22261-22280 Msa1456180:three_prime_UTR 35.0%
! TGCTTTGGATTTCATGGTTT+CGG - tig0036981:22285-22304 Msa1456180:three_prime_UTR 35.0%
ACCTTTATTCCTACCTATGA+TGG - tig0036981:22319-22338 Msa1456180:three_prime_UTR 35.0%
CCTTTATTCCTACCTATGAT+GGG - tig0036981:22320-22339 Msa1456180:three_prime_UTR 35.0%
AAAAGTCCATCTTATTGGAC+CGG - tig0036981:22502-22521 Msa1456180:three_prime_UTR 35.0%
TACAAACTCATTCCATGGAA+GGG + tig0036981:22568-22587 Msa1456170:three_prime_UTR 35.0%
ACAATGATTCGACGATAAGT+CGG + tig0036981:22630-22649 Msa1456170:three_prime_UTR 35.0%
TAGAAATAATCCTCCTCCTT+TGG + tig0036981:22660-22679 Msa1456170:three_prime_UTR 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG - tig0036981:22711-22730 Msa1456180:three_prime_UTR 35.0%
CTTACTTGAGTAGAGTTATG+AGG + tig0036981:22738-22757 Msa1456170:three_prime_UTR 35.0%
AGATTGCTCTTGCATACTTA+TGG + tig0036981:22807-22826 Msa1456170:three_prime_UTR 35.0%
ATGCAAGAGCAATCTGAAAA+TGG - tig0036981:22812-22831 Msa1456180:three_prime_UTR 35.0%
TTTGGTGGGGGAAAAAATAA+GGG + tig0036981:22967-22986 Msa1456170:three_prime_UTR 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG + tig0036981:22968-22987 Msa1456170:three_prime_UTR 35.0%
! AACTATACTGAATTTGGTGG+GGG + tig0036981:22979-22998 Msa1456170:three_prime_UTR 35.0%
! CAACTATACTGAATTTGGTG+GGG + tig0036981:22980-22999 Msa1456170:three_prime_UTR 35.0%
GGATGAAAAAACTGAACACT+TGG + tig0036981:23281-23300 Msa1456170:three_prime_UTR 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG + tig0036981:23302-23321 None:intergenic 35.0%
AAGAGGCAAATCTAGATTCA+AGG + tig0036981:23542-23561 None:intergenic 35.0%
GAACAAAGCATACAAATTGC+AGG + tig0036981:23577-23596 None:intergenic 35.0%
GTACTACGTAAAATGCAATG+AGG - tig0036981:23649-23668 Msa1456180:intron 35.0%
TTATCACACAACCATTGAAC+AGG + tig0036981:23819-23838 None:intergenic 35.0%
ATACTAGCTCCTCATTATCA+CGG - tig0036981:23879-23898 Msa1456180:CDS 35.0%
! ATCTGAGATTAGTAGCACTA+GGG + tig0036981:23976-23995 None:intergenic 35.0%
! TATCTGAGATTAGTAGCACT+AGG + tig0036981:23977-23996 None:intergenic 35.0%
! AGTGCTACTAATCTCAGATA+TGG - tig0036981:23977-23996 Msa1456180:CDS 35.0%
TATGCATATCGATCTGCATT+TGG - tig0036981:24133-24152 Msa1456180:intron 35.0%
AAACAAAAGCAATGCAGAGT+TGG + tig0036981:24182-24201 None:intergenic 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG + tig0036981:24224-24243 None:intergenic 35.0%
GATCATGCTTATGAAGTCAA+AGG + tig0036981:24635-24654 None:intergenic 35.0%
! GGACTTCTTTTGTATGTGAA+GGG + tig0036981:24838-24857 None:intergenic 35.0%
! AGGACTTCTTTTGTATGTGA+AGG + tig0036981:24839-24858 None:intergenic 35.0%
TACGTAGCTTAACCCAAAGT+TGG - tig0036981:21085-21104 Msa1456180:three_prime_UTR 40.0%
!! TGCTTTTTGGCACCAACTTT+GGG + tig0036981:21100-21119 Msa1456170:CDS 40.0%
TACTGAAAATAAGGGAAGGG+GGG + tig0036981:21164-21183 Msa1456170:CDS 40.0%
CTACTGAAAATAAGGGAAGG+GGG + tig0036981:21165-21184 Msa1456170:CDS 40.0%
ACCTTGTGTTTGGCAAAAAG+CGG + tig0036981:21231-21250 Msa1456170:intron 40.0%
TTGGGAGACCATTATTTGCT+AGG + tig0036981:21281-21300 Msa1456170:intron 40.0%
ACCCCTCAAATTGAGAATCT+GGG - tig0036981:21351-21370 Msa1456180:three_prime_UTR 40.0%
TCAGATATGCATTCCCTTCA+TGG - tig0036981:21747-21766 Msa1456180:three_prime_UTR 40.0%
TTTCCTTCTCTCTCCATGAA+GGG + tig0036981:21763-21782 Msa1456170:CDS 40.0%
ATTTCCTTCTCTCTCCATGA+AGG + tig0036981:21764-21783 Msa1456170:CDS 40.0%
CAATGTAAATCTGTGTCTCC+CGG + tig0036981:21871-21890 Msa1456170:CDS 40.0%
ACACAGATTTACATTGCAGC+CGG - tig0036981:21875-21894 Msa1456180:three_prime_UTR 40.0%
TTCACCACCATAAATCTCAC+CGG + tig0036981:21897-21916 Msa1456170:CDS 40.0%
CACAAGCTAGAATCATTCAG+TGG + tig0036981:22033-22052 Msa1456170:intron 40.0%
AGCACTTGGATTGAAAGTTG+TGG - tig0036981:22099-22118 Msa1456180:intron 40.0%
!! GAAAGTTGTGGCTCTGAAAA+TGG - tig0036981:22111-22130 Msa1456180:intron 40.0%
GAACTGCTGTAACTCATCAA+GGG + tig0036981:22242-22261 Msa1456170:CDS 40.0%
CCCATCATAGGTAGGAATAA+AGG + tig0036981:22323-22342 Msa1456170:CDS 40.0%
! TTTTGCCATGTTCCCATCAT+AGG + tig0036981:22335-22354 Msa1456170:CDS 40.0%
AACATGGCAAAACTTGTGGA+AGG - tig0036981:22343-22362 Msa1456180:three_prime_UTR 40.0%
CGTGAGTAAATAGATACCTG+CGG + tig0036981:22372-22391 Msa1456170:CDS 40.0%
TATCTTATTAGCGCTCATGC+AGG - tig0036981:22466-22485 Msa1456180:three_prime_UTR 40.0%
! GCAATTGTACAAGCCTTTTC+CGG + tig0036981:22524-22543 Msa1456170:three_prime_UTR 40.0%
ATCAAAATGGAACCCTTCCA+TGG - tig0036981:22553-22572 Msa1456180:three_prime_UTR 40.0%
CTACAAACTCATTCCATGGA+AGG + tig0036981:22569-22588 Msa1456170:three_prime_UTR 40.0%
GCATCTACAAACTCATTCCA+TGG + tig0036981:22573-22592 Msa1456170:three_prime_UTR 40.0%
ACAGGTTCACGAAAAGAGAA+TGG - tig0036981:22599-22618 Msa1456180:three_prime_UTR 40.0%
CAGGTTCACGAAAAGAGAAT+GGG - tig0036981:22600-22619 Msa1456180:three_prime_UTR 40.0%
CATTGTAGACAAACCAAAGG+AGG - tig0036981:22644-22663 Msa1456180:three_prime_UTR 40.0%
GCTCTTGCATACTTATGGTT+GGG + tig0036981:22802-22821 Msa1456170:three_prime_UTR 40.0%
TGCTCTTGCATACTTATGGT+TGG + tig0036981:22803-22822 Msa1456170:three_prime_UTR 40.0%
CATCTTTGCAAGCCTCTATA+TGG + tig0036981:22930-22949 Msa1456170:three_prime_UTR 40.0%
! TTTTCCACTTTACAAGCTGC+AGG - tig0036981:23141-23160 Msa1456180:CDS 40.0%
TGGGTTGTAATAATTGTGGC+CGG - tig0036981:23171-23190 Msa1456180:CDS 40.0%
! CGATGATCAAGTTTTTGACC+CGG + tig0036981:23193-23212 Msa1456170:three_prime_UTR 40.0%
TTGATCATCGTCCCCTTTAA+AGG - tig0036981:23203-23222 Msa1456180:CDS 40.0%
ATCGCAAATGTAGCCTTCTA+CGG + tig0036981:23255-23274 Msa1456170:three_prime_UTR 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG - tig0036981:23361-23380 Msa1456180:intron 40.0%
TTATCAAGAAAGGAGGCTCA+AGG + tig0036981:23418-23437 None:intergenic 40.0%
AGAATTGGAACTAGACCAGT+TGG + tig0036981:23445-23464 None:intergenic 40.0%
GATCTTCGAGCAGAAAGAAT+TGG + tig0036981:23460-23479 None:intergenic 40.0%
AAGGGGAAAAAATGATCCTG+CGG + tig0036981:23494-23513 None:intergenic 40.0%
TAGCAGTCGGAATAAGAGAA+GGG + tig0036981:23512-23531 None:intergenic 40.0%
ATAGCAGTCGGAATAAGAGA+AGG + tig0036981:23513-23532 None:intergenic 40.0%
! TCTGAGATTAGTAGCACTAG+GGG + tig0036981:23975-23994 None:intergenic 40.0%
TGCTGTCTGAGAAAAACCAT+TGG - tig0036981:24045-24064 Msa1456180:intron 40.0%
GTCAAAAAAAGGGTCTGACT+CGG - tig0036981:24090-24109 Msa1456180:intron 40.0%
TATGCATACACCTTGACACT+GGG + tig0036981:24121-24140 None:intergenic 40.0%
ATATGCATACACCTTGACAC+TGG + tig0036981:24122-24141 None:intergenic 40.0%
CACATTCATAACTGTGCAGT+TGG + tig0036981:24240-24259 None:intergenic 40.0%
AAAGTTCTGCTGCAACTTTC+TGG - tig0036981:24333-24352 Msa1456180:CDS 40.0%
!! CTTTCTGGCTCTGATACATT+TGG - tig0036981:24348-24367 Msa1456180:CDS 40.0%
TTTCCTTGATATGGAAGAGC+TGG - tig0036981:24391-24410 Msa1456180:CDS 40.0%
ATGATCATCTGTAGTCACTC+TGG - tig0036981:24649-24668 Msa1456180:intron 40.0%
!! GTGCTTTTTGGCACCAACTT+TGG + tig0036981:21101-21120 Msa1456170:CDS 45.0%
TAAGGGAAGGGGGGAAATAT+AGG + tig0036981:21155-21174 Msa1456170:CDS 45.0%
!!! ACCGCTTTTTGCCAAACACA+AGG - tig0036981:21227-21246 Msa1456180:three_prime_UTR 45.0%
! GCTTTTTGCCAAACACAAGG+TGG - tig0036981:21230-21249 Msa1456180:three_prime_UTR 45.0%
GATGCACGCCTAGCAAATAA+TGG - tig0036981:21270-21289 Msa1456180:three_prime_UTR 45.0%
! TAGGTGCCGTGTTAATTACC+AGG - tig0036981:21317-21336 Msa1456180:three_prime_UTR 45.0%
CACCCCTCAAATTGAGAATC+TGG - tig0036981:21350-21369 Msa1456180:three_prime_UTR 45.0%
CCCCAGATTCTCAATTTGAG+GGG + tig0036981:21355-21374 Msa1456170:intron 45.0%
CCCCTCAAATTGAGAATCTG+GGG - tig0036981:21352-21371 Msa1456180:three_prime_UTR 45.0%
GCCCCAGATTCTCAATTTGA+GGG + tig0036981:21356-21375 Msa1456170:intron 45.0%
TGCCCCAGATTCTCAATTTG+AGG + tig0036981:21357-21376 Msa1456170:intron 45.0%
TGATTCAGATACTTCGCGAG+AGG - tig0036981:21382-21401 Msa1456180:three_prime_UTR 45.0%
GATTCAGATACTTCGCGAGA+GGG - tig0036981:21383-21402 Msa1456180:three_prime_UTR 45.0%
ATTCAGATACTTCGCGAGAG+GGG - tig0036981:21384-21403 Msa1456180:three_prime_UTR 45.0%
CTCAGATGCAATGCCACAAA+AGG + tig0036981:21411-21430 Msa1456170:intron 45.0%
GAGATATGAGATGGACATGC+TGG - tig0036981:21428-21447 Msa1456180:three_prime_UTR 45.0%
! GCTTTCTCAGGTTGTACTCT+TGG - tig0036981:21450-21469 Msa1456180:three_prime_UTR 45.0%
TTGCACTAATGAAGAAGCCG+AGG - tig0036981:21473-21492 Msa1456180:three_prime_UTR 45.0%
ATTCCCTTCATGGAGAGAGA+AGG - tig0036981:21757-21776 Msa1456180:three_prime_UTR 45.0%
TCTGAAGAAAGGAGATCCCA+GGG - tig0036981:21788-21807 Msa1456180:three_prime_UTR 45.0%
TGTCAAAGGACATAGACCCT+GGG + tig0036981:21807-21826 Msa1456170:CDS 45.0%
ACCTAAGGCTTGCATAACCA+AGG + tig0036981:21843-21862 Msa1456170:CDS 45.0%
!! TGCAAGCCTTAGGTTTTGAC+CGG - tig0036981:21849-21868 Msa1456180:three_prime_UTR 45.0%
ATTGCAGCCGGTGAGATTTA+TGG - tig0036981:21887-21906 Msa1456180:three_prime_UTR 45.0%
AAGGGGGAGGGAGATATAAA+TGG + tig0036981:21968-21987 Msa1456170:intron 45.0%
!! GTTGTGGCTCTGAAAATGGT+TGG - tig0036981:22115-22134 Msa1456180:intron 45.0%
GGAACTGCTGTAACTCATCA+AGG + tig0036981:22243-22262 Msa1456170:CDS 45.0%
TTCATCACAGATGGCTGCTT+TGG - tig0036981:22270-22289 Msa1456180:three_prime_UTR 45.0%
! GATGGCTGCTTTGGATTTCA+TGG - tig0036981:22279-22298 Msa1456180:three_prime_UTR 45.0%
GATTTCATGGTTTCGGTAGC+CGG - tig0036981:22292-22311 Msa1456180:three_prime_UTR 45.0%
!! GGTAGGAATAAAGGTGTCAC+CGG + tig0036981:22314-22333 Msa1456170:CDS 45.0%
! TCCTACCTATGATGGGAACA+TGG - tig0036981:22327-22346 Msa1456180:three_prime_UTR 45.0%
TGGGAACATGGCAAAACTTG+TGG - tig0036981:22339-22358 Msa1456180:three_prime_UTR 45.0%
GAGTAAATAGATACCTGCGG+TGG + tig0036981:22369-22388 Msa1456170:CDS 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG + tig0036981:22511-22530 Msa1456170:three_prime_UTR 45.0%
CCATCTTATTGGACCGGAAA+AGG - tig0036981:22508-22527 Msa1456180:three_prime_UTR 45.0%
TGTAGACAAACCAAAGGAGG+AGG - tig0036981:22647-22666 Msa1456180:three_prime_UTR 45.0%
CACACTTTGTTCCCTCACAA+AGG + tig0036981:22701-22720 Msa1456170:three_prime_UTR 45.0%
! CTCTAAGAACTTATGCCCGA+GGG + tig0036981:22844-22863 Msa1456170:three_prime_UTR 45.0%
! TCTCTAAGAACTTATGCCCG+AGG + tig0036981:22845-22864 Msa1456170:three_prime_UTR 45.0%
TACAAGCTGCAGGCATGTAA+TGG - tig0036981:23151-23170 Msa1456180:CDS 45.0%
ACAAGCTGCAGGCATGTAAT+GGG - tig0036981:23152-23171 Msa1456180:CDS 45.0%
GGGTTGTAATAATTGTGGCC+GGG - tig0036981:23172-23191 Msa1456180:CDS 45.0%
CTCAAGGATCTTGGACTTTG+CGG + tig0036981:23402-23421 None:intergenic 45.0%
AGATCTCATCAATTTGCCGC+AGG - tig0036981:23475-23494 Msa1456180:CDS 45.0%
AGCAGTCGGAATAAGAGAAG+GGG + tig0036981:23511-23530 None:intergenic 45.0%
TCAAGGCTTGCAATAGCAGT+CGG + tig0036981:23525-23544 None:intergenic 45.0%
CATTCAGGGTTCCAACATGA+TGG + tig0036981:23784-23803 None:intergenic 45.0%
TGGTTGTGTGATAACCAGCA+AGG - tig0036981:23825-23844 Msa1456180:intron 45.0%
GGTTGTGTGATAACCAGCAA+GGG - tig0036981:23826-23845 Msa1456180:intron 45.0%
TGAGGAGCTAGTATGCAAAG+CGG + tig0036981:23873-23892 None:intergenic 45.0%
TCCTCATTATCACGGCTCAT+GGG - tig0036981:23887-23906 Msa1456180:CDS 45.0%
ACTGTTCAGAGACTCCATCT+GGG + tig0036981:23927-23946 None:intergenic 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG + tig0036981:23954-23973 None:intergenic 45.0%
CTGAGATTAGTAGCACTAGG+GGG + tig0036981:23974-23993 None:intergenic 45.0%
!! AGATATGGAAGCATCCCTTC+TGG - tig0036981:23992-24011 Msa1456180:CDS 45.0%
ATGCATACACCTTGACACTG+GGG + tig0036981:24120-24139 None:intergenic 45.0%
GCAATCCAAGCTGTATTCTG+AGG + tig0036981:24313-24332 None:intergenic 45.0%
TAGCCAGCTCTTCCATATCA+AGG + tig0036981:24397-24416 None:intergenic 45.0%
ATACATCCATGTCCATCCGA+GGG + tig0036981:24469-24488 None:intergenic 45.0%
AATACATCCATGTCCATCCG+AGG + tig0036981:24470-24489 None:intergenic 45.0%
TTCTCCTGCCTTGACAGAAA+GGG - tig0036981:24562-24581 Msa1456180:intron 45.0%
GGGATTACCTATTTGCCCTA+AGG + tig0036981:24592-24611 None:intergenic 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG + tig0036981:24612-24631 None:intergenic 45.0%
TATGAAGTCAAAGGACCAGC+TGG + tig0036981:24626-24645 None:intergenic 45.0%
GTATGTGAAGGGTCGTAAAC+CGG + tig0036981:24827-24846 None:intergenic 45.0%
GAAGTGCACCACCTTGTGTT+TGG + tig0036981:21241-21260 Msa1456170:intron 50.0%
GAGGGGTGAATTTAAGTGCC+TGG + tig0036981:21338-21357 Msa1456170:intron 50.0%
!! ATGGACATGCTGGCTTTCTC+AGG - tig0036981:21438-21457 Msa1456180:three_prime_UTR 50.0%
AAGAAGCCGAGGATCTCAAG+CGG - tig0036981:21484-21503 Msa1456180:three_prime_UTR 50.0%
GTCTGAAGAAAGGAGATCCC+AGG - tig0036981:21787-21806 Msa1456180:three_prime_UTR 50.0%
GTGTCAAAGGACATAGACCC+TGG + tig0036981:21808-21827 Msa1456170:CDS 50.0%
GGGTCTATGTCCTTTGACAC+CGG - tig0036981:21808-21827 Msa1456180:three_prime_UTR 50.0%
TCTATGTCCTTTGACACCGG+AGG - tig0036981:21811-21830 Msa1456180:three_prime_UTR 50.0%
ATAACCAAGGCAGTCTCCTC+CGG + tig0036981:21830-21849 Msa1456170:CDS 50.0%
GCCTTGGTTATGCAAGCCTT+AGG - tig0036981:21839-21858 Msa1456180:three_prime_UTR 50.0%
!! GCAAGCCTTAGGTTTTGACC+GGG - tig0036981:21850-21869 Msa1456180:three_prime_UTR 50.0%
TGTCTCCCGGTCAAAACCTA+AGG + tig0036981:21858-21877 Msa1456170:CDS 50.0%
!! CCAAGTGCTGAAAAATGGGG+AGG + tig0036981:22088-22107 Msa1456170:intron 50.0%
!! CCTCCCCATTTTTCAGCACT+TGG - tig0036981:22085-22104 Msa1456180:intron 50.0%
GCCATGTTCCCATCATAGGT+AGG + tig0036981:22331-22350 Msa1456170:CDS 50.0%
TAGCGCTCATGCAGGTATTC+CGG - tig0036981:22474-22493 Msa1456180:three_prime_UTR 50.0%
GTTTGTAGATGCTGTGCGAC+AGG - tig0036981:22581-22600 Msa1456180:three_prime_UTR 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG + tig0036981:22685-22704 Msa1456170:three_prime_UTR 50.0%
!! CCTCACAAAGGCACTCATGA+GGG + tig0036981:22689-22708 Msa1456170:three_prime_UTR 50.0%
CCTCATGAGTGCCTTTGTGA+GGG - tig0036981:22687-22706 Msa1456180:three_prime_UTR 50.0%
CTGAAAATGGCTCCTTCCCT+CGG - tig0036981:22825-22844 Msa1456180:three_prime_UTR 50.0%
TGAAAATGGCTCCTTCCCTC+GGG - tig0036981:22826-22845 Msa1456180:three_prime_UTR 50.0%
AAGAACTTATGCCCGAGGGA+AGG + tig0036981:22840-22859 Msa1456170:three_prime_UTR 50.0%
CATGCCTGCAGCTTGTAAAG+TGG + tig0036981:23148-23167 Msa1456170:three_prime_UTR 50.0%
TCACATGCGTTCACCGTAGA+AGG - tig0036981:23239-23258 Msa1456180:CDS 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG + tig0036981:23381-23400 None:intergenic 50.0%
CTTGGACTTTGCGGTGAAAG+TGG + tig0036981:23393-23412 None:intergenic 50.0%
GAAAGGAGGCTCAAGGATCT+TGG + tig0036981:23411-23430 None:intergenic 50.0%
TGTGTGATAACCAGCAAGGG+CGG - tig0036981:23829-23848 Msa1456180:CDS 50.0%
CTCCTCATTATCACGGCTCA+TGG - tig0036981:23886-23905 Msa1456180:CDS 50.0%
CTGTTCAGAGACTCCATCTG+GGG + tig0036981:23926-23945 None:intergenic 50.0%
CACTGTTCAGAGACTCCATC+TGG + tig0036981:23928-23947 None:intergenic 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG - tig0036981:23999-24018 Msa1456180:CDS 50.0%
ATAACCGCCCTCTTCCAGAA+GGG + tig0036981:24009-24028 None:intergenic 50.0%
TATAACCGCCCTCTTCCAGA+AGG + tig0036981:24010-24029 None:intergenic 50.0%
GTAGACGTTGCTGAGACCAA+TGG + tig0036981:24064-24083 None:intergenic 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG + tig0036981:24176-24195 None:intergenic 50.0%
TTGCGCCTCAGAATACAGCT+TGG - tig0036981:24305-24324 Msa1456180:CDS 50.0%
TACATCCATGTCCATCCGAG+GGG + tig0036981:24468-24487 None:intergenic 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG + tig0036981:24561-24580 None:intergenic 50.0%
GTTCTCCTGCCTTGACAGAA+AGG - tig0036981:24561-24580 Msa1456180:intron 50.0%
TCTCCTGCCTTGACAGAAAG+GGG - tig0036981:24563-24582 Msa1456180:intron 50.0%
TCCCAAGAGAAAAGACCAGC+TGG - tig0036981:24608-24627 Msa1456180:intron 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG + tig0036981:24613-24632 None:intergenic 50.0%
CCTCATCCGCTTGAGATCCT+CGG + tig0036981:21493-21512 Msa1456170:intron 55.0%
GCAGCCGGTGAGATTTATGG+TGG - tig0036981:21890-21909 Msa1456180:three_prime_UTR 55.0%
CCCTCATGAGTGCCTTTGTG+AGG - tig0036981:22686-22705 Msa1456180:three_prime_UTR 55.0%
!! CCCTCACAAAGGCACTCATG+AGG + tig0036981:22690-22709 Msa1456170:three_prime_UTR 55.0%
GCAGGATCGCAAGCTGAAAG+AGG + tig0036981:23559-23578 None:intergenic 55.0%
! GCCCATGAGCCGTGATAATG+AGG + tig0036981:23891-23910 None:intergenic 55.0%
CACCTCAAGATGACCCCAGA+TGG - tig0036981:23910-23929 Msa1456180:CDS 55.0%
! CTCCATCTGGGGTCATCTTG+AGG + tig0036981:23915-23934 None:intergenic 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG - tig0036981:23998-24017 Msa1456180:CDS 55.0%
CTCGGATATCCCCAGTGTCA+AGG - tig0036981:24108-24127 Msa1456180:intron 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG + tig0036981:24169-24188 None:intergenic 55.0%
TCCTACCGTCGAAAACCCCT+CGG - tig0036981:24450-24469 Msa1456180:CDS 55.0%
! TCCATCCGAGGGGTTTTCGA+CGG + tig0036981:24458-24477 None:intergenic 55.0%
GAAAACCCCTCGGATGGACA+TGG - tig0036981:24460-24479 Msa1456180:CDS 55.0%
CTCCTGCCTTGACAGAAAGG+GGG - tig0036981:24564-24583 Msa1456180:intron 55.0%
AAGGAGCCCCCTTTCTGTCA+AGG + tig0036981:24573-24592 None:intergenic 55.0%
TGACAGAAAGGGGGCTCCTT+AGG - tig0036981:24573-24592 Msa1456180:intron 55.0%
GACAGAAAGGGGGCTCCTTA+GGG - tig0036981:24574-24593 Msa1456180:intron 55.0%
CTGTAGTCACTCTGGCACTG+TGG - tig0036981:24657-24676 Msa1456180:intron 55.0%
! TCGCGAGAGGGGACCTTTTG+TGG - tig0036981:21395-21414 Msa1456180:three_prime_UTR 60.0%
CCGAGGATCTCAAGCGGATG+AGG - tig0036981:21490-21509 Msa1456180:three_prime_UTR 60.0%
! GCAGTCTCCTCCGGTGTCAA+AGG + tig0036981:21821-21840 Msa1456170:CDS 60.0%
AACTTGTGGAAGGCCACCGC+AGG - tig0036981:22353-22372 Msa1456180:three_prime_UTR 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG - tig0036981:23838-23857 Msa1456180:CDS 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG - tig0036981:24002-24021 Msa1456180:CDS 60.0%
! TCCGAGGGGTTTTCGACGGT+AGG + tig0036981:24454-24473 None:intergenic 60.0%
ACCGTCGAAAACCCCTCGGA+TGG - tig0036981:24454-24473 Msa1456180:CDS 60.0%
AGCCCCCTTTCTGTCAAGGC+AGG + tig0036981:24569-24588 None:intergenic 60.0%
GGGGGCTCCTTAGGGCAAAT+AGG - tig0036981:24582-24601 Msa1456180:intron 60.0%
GACACCGGAGGAGACTGCCT+TGG - tig0036981:21823-21842 Msa1456180:three_prime_UTR 65.0%
GCCTGCAAATCCGCCCTTGC+TGG + tig0036981:23842-23861 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0036981 gene 20785 24999 20785 ID=Msa1456180;Name=Msa1456180
tig0036981 mRNA 20785 24999 20785 ID=Msa1456180-mRNA-1;Parent=Msa1456180;Name=Msa1456180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.83|1|0.6|0.5|6|1996|321
tig0036981 exon 20785 21964 20785 ID=Msa1456180-mRNA-1:exon:20623;Parent=Msa1456180-mRNA-1
tig0036981 exon 22207 23296 22207 ID=Msa1456180-mRNA-1:exon:20622;Parent=Msa1456180-mRNA-1
tig0036981 exon 23410 23567 23410 ID=Msa1456180-mRNA-1:exon:20621;Parent=Msa1456180-mRNA-1
tig0036981 exon 23829 24033 23829 ID=Msa1456180-mRNA-1:exon:20620;Parent=Msa1456180-mRNA-1
tig0036981 exon 24273 24562 24273 ID=Msa1456180-mRNA-1:exon:20619;Parent=Msa1456180-mRNA-1
tig0036981 exon 24961 24999 24961 ID=Msa1456180-mRNA-1:exon:20618;Parent=Msa1456180-mRNA-1
tig0036981 CDS 24961 24999 24961 ID=Msa1456180-mRNA-1:cds;Parent=Msa1456180-mRNA-1
tig0036981 CDS 24273 24562 24273 ID=Msa1456180-mRNA-1:cds;Parent=Msa1456180-mRNA-1
tig0036981 CDS 23829 24033 23829 ID=Msa1456180-mRNA-1:cds;Parent=Msa1456180-mRNA-1
tig0036981 CDS 23410 23567 23410 ID=Msa1456180-mRNA-1:cds;Parent=Msa1456180-mRNA-1
tig0036981 CDS 23023 23296 23023 ID=Msa1456180-mRNA-1:cds;Parent=Msa1456180-mRNA-1
tig0036981 three_prime_UTR 22207 23022 22207 ID=Msa1456180-mRNA-1:three_prime_utr;Parent=Msa1456180-mRNA-1
tig0036981 three_prime_UTR 20785 21964 20785 ID=Msa1456180-mRNA-1:three_prime_utr;Parent=Msa1456180-mRNA-1
Gene Sequence

>Msa1456180

CCTGTTAGCTGGTCAAATGAAAAGTATTACTTGGAGCAGATTCTACCGCTTTTTGCCAAACACAAGGTGGTGCACTTCAACAAAACAGATGCACGCCTAGCAAATAATGGTCTCCCAATTGATCTACAGAAACTTAGGTGCCGTGTTAATTACCAGGCACTTAAATTCACCCCTCAAATTGAGAATCTGGGGCAAAAATTGATTCAGATACTTCGCGAGAGGGGACCTTTTGTGGCATTGCATCTGAGATATGAGATGGACATGCTGGCTTTCTCAGGTTGTACTCTTGGTTGCACTAATGAAGAAGCCGAGGATCTCAAGCGGATGAGATATGCATTCCCTTCATGGAGAGAGAAGGAAATAGTGTCTGAAGAAAGGAGATCCCAGGGTCTATGTCCTTTGACACCGGAGGAGACTGCCTTGGTTATGCAAGCCTTAGGTTTTGACCGGGAGACACAGATTTACATTGCAGCCGGTGAGATTTATGGTGGTGAACGTAGACTTGCGCAACTGAGAGCTGCATTTCCAAAAATTGTTAAAAAAGAGGTATTGGTCGCCCTTGATGAGTTACAGCAGTTCCAAAATCATTCATCACAGATGGCTGCTTTGGATTTCATGGTTTCGGTAGCCGGTGACACCTTTATTCCTACCTATGATGGGAACATGGCAAAACTTGTGGAAGGCCACCGCAGGTATTCCGGTTTTAAAAAGTCCATCTTATTGGACCGGAAAAGGCTTGTACAATTGCTTGATATGCATCAAAATGGAACCCTTCCATGGAATGAGTTTGTAGATGCTGTGCGACAGGTTCACGAAAAGAGAATGGGTCAGCCGACTTATCGTCGAATCATTGTAGACAAACCAAAGGAGGAGGATTATTTCTACGCCAACCCTCATGAGTGCCTTTGTGAGGGAACAAAGTGTGATGATTTGCTAGGTCCTCATAACTCTACTCAAGTAAGATGA

Protein sequence

>Msa1456180

PVSWSNEKYYLEQILPLFAKHKVVHFNKTDARLANNGLPIDLQKLRCRVNYQALKFTPQIENLGQKLIQILRERGPFVALHLRYEMDMLAFSGCTLGCTNEEAEDLKRMRYAFPSWREKEIVSEERRSQGLCPLTPEETALVMQALGFDRETQIYIAAGEIYGGERRLAQLRAAFPKIVKKEVLVALDELQQFQNHSSQMAALDFMVSVAGDTFIPTYDGNMAKLVEGHRRYSGFKKSILLDRKRLVQLLDMHQNGTLPWNEFVDAVRQVHEKRMGQPTYRRIIVDKPKEEDYFYANPHECLCEGTKCDDLLGPHNSTQVR*