AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1236190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236190 MtrunA17_Chr1g0213361 93.103 319 18 3 1 317 1 317 0.0 550
Msa1236190 MtrunA17_Chr1g0181861 62.821 234 86 1 82 314 1 234 2.33e-106 310
Msa1236190 MtrunA17_Chr7g0263221 63.362 232 84 1 86 316 4 235 3.00e-105 307
Msa1236190 MtrunA17_Chr1g0181851 55.405 222 67 1 93 314 8 197 8.55e-82 247
Msa1236190 MtrunA17_Chr1g0181841 58.865 141 32 1 87 201 1 141 2.91e-50 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1236190 AT3G55040.1 61.066 244 92 2 73 315 47 288 3.26e-104 306
Msa1236190 AT5G02790.1 64.286 224 79 1 92 314 12 235 1.41e-102 300
Msa1236190 AT5G02780.1 62.780 223 80 3 94 314 16 237 7.34e-98 288
Msa1236190 AT5G02780.3 62.780 223 80 3 94 314 16 237 7.34e-98 288
Msa1236190 AT5G02780.2 63.063 222 79 3 94 314 16 235 3.02e-97 287
Msa1236190 AT1G19570.1 25.126 199 138 6 117 312 20 210 1.59e-11 63.2

Find 107 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGACCTTTAGTTATTAAT+TGG 0.188177 8_2:-14653322 None:intergenic
GACTGAGAACAAACTATTAT+TGG 0.219954 8_2:-14650716 None:intergenic
CCTCCACCTTCCTTATTTGA+TGG 0.224092 8_2:+14651092 Msa1236190:CDS
GAAAGGTCCTCGATCATATT+TGG 0.263184 8_2:-14652218 None:intergenic
TCATCATCATATAGGAATTA+TGG 0.265649 8_2:+14650663 Msa1236190:CDS
AGGAGTCAAGAGTTCCAAAA+TGG 0.298721 8_2:+14653057 Msa1236190:three_prime_UTR
GATGCCAAACATTGAATTCA+TGG 0.301206 8_2:-14653029 None:intergenic
ATCTACAAGACAGACCTTCT+TGG 0.322770 8_2:+14651511 Msa1236190:CDS
CCTGGTGGTTCCATCAAATA+AGG 0.333486 8_2:-14651102 None:intergenic
TGAAGTTAGAGGAGAGAGTC+TGG 0.356107 8_2:+14651704 Msa1236190:CDS
TATATTGACACTCACTTTGA+AGG 0.358114 8_2:+14651738 Msa1236190:CDS
CTTCCTTGGCCAATTCAGTC+TGG 0.360188 8_2:+14652240 Msa1236190:CDS
TTAATAACTAAAGGTCTGAT+TGG 0.369479 8_2:+14653326 Msa1236190:three_prime_UTR
GTGGAGGTGAAGTGGAAGTA+AGG 0.371907 8_2:-14651076 None:intergenic
GGTGCCTGTCGTATGATTCC+TGG 0.375012 8_2:-14653121 None:intergenic
GCCCCTATGCCCAGCGTGTA+TGG 0.379106 8_2:+14651243 Msa1236190:CDS
GCAGACATACCCGGTTGATA+TGG 0.386993 8_2:-14650890 None:intergenic
AAGAATAACCTTAGTGTTAC+GGG 0.390064 8_2:-14651270 None:intergenic
GAACACAATAATGAAGTTAG+AGG 0.398648 8_2:+14651693 Msa1236190:CDS
GTTATGGAAGCAGGGATTGC+AGG 0.399441 8_2:+14651464 Msa1236190:intron
TATAGCATATGCTCCTTTCA+TGG 0.403086 8_2:+14652383 Msa1236190:CDS
TAAGGATAAATAACCTTGTT+GGG 0.403441 8_2:-14651555 None:intergenic
GATCGAGGACCTTTCTTCCT+TGG 0.404035 8_2:+14652226 Msa1236190:CDS
GTATCTCACACTAGGGTAAA+GGG 0.404706 8_2:-14651766 None:intergenic
TAGCTTTCAACTAACTCCTT+AGG 0.406704 8_2:-14652898 None:intergenic
TCAATGTTTGGCATCATAGT+AGG 0.413145 8_2:+14653037 Msa1236190:three_prime_UTR
AAATCCATGAATTCAATGTT+TGG 0.414052 8_2:+14653025 Msa1236190:exon
GAAGTGGAAGTAAGGGGTGG+TGG 0.415614 8_2:-14651068 None:intergenic
GTGGAAATGGATGGCAGATA+TGG 0.418327 8_2:-14650785 None:intergenic
ATTCATTGTCATCATCATAT+AGG 0.423743 8_2:+14650655 Msa1236190:CDS
TAACTTCATATTATAAACTT+TGG 0.431944 8_2:-14653249 None:intergenic
AGGTCTGTCTTGTAGATCAA+TGG 0.438145 8_2:-14651505 None:intergenic
AATCCATACACGCTGGGCAT+AGG 0.442924 8_2:-14651246 None:intergenic
GTCGTATGATTCCTGGTCCC+TGG 0.443646 8_2:-14653114 None:intergenic
GAAGAATAACCTTAGTGTTA+CGG 0.444757 8_2:-14651271 None:intergenic
AGTGGCAAAGTAAACTGTTT+GGG 0.444817 8_2:+14653282 Msa1236190:three_prime_UTR
CTAATCATCATTTCAATATG+TGG 0.446573 8_2:-14653181 None:intergenic
ATCCATACACGCTGGGCATA+GGG 0.447295 8_2:-14651245 None:intergenic
ATAAGGATAAATAACCTTGT+TGG 0.448370 8_2:-14651556 None:intergenic
ACAACAGTAGCCATATCAAC+CGG 0.450420 8_2:+14650880 Msa1236190:CDS
AAGCTACAAGAAGCGATTCC+TGG 0.453316 8_2:+14652915 Msa1236190:CDS
CAGTGGCAAAGTAAACTGTT+TGG 0.453892 8_2:+14653281 Msa1236190:three_prime_UTR
GTATACGCACCAGACTGAAT+TGG 0.454158 8_2:-14652249 None:intergenic
GCTTATTATGAGGTGAATAG+TGG 0.457123 8_2:-14650804 None:intergenic
TATGAGGTGAATAGTGGAAA+TGG 0.459487 8_2:-14650798 None:intergenic
AAAGGAGATGCAACTGAGGC+TGG 0.461674 8_2:+14651943 Msa1236190:CDS
TAAATAGGGTCCTGATGATA+AGG 0.462553 8_2:+14651858 Msa1236190:intron
AGTATCTCACACTAGGGTAA+AGG 0.474393 8_2:-14651767 None:intergenic
CAAATGCATTATATCCATCC+AGG 0.479463 8_2:+14653096 Msa1236190:three_prime_UTR
GGTCTGTCTTGTAGATCAAT+GGG 0.491503 8_2:-14651504 None:intergenic
CTGAATTGGCCAAGGAAGAA+AGG 0.493947 8_2:-14652235 None:intergenic
TAAGGAAGGTGGAGGTGAAG+TGG 0.498397 8_2:-14651084 None:intergenic
TCAGCAAACTCCTTATCATC+AGG 0.499949 8_2:-14651868 None:intergenic
CTGGGCATAGGGGCATTTGT+AGG 0.503100 8_2:-14651234 None:intergenic
TAACTCCTTAGGATCAGAAC+GGG 0.507962 8_2:-14652887 None:intergenic
AATAACCCGTTCTGATCCTA+AGG 0.511599 8_2:+14652882 Msa1236190:CDS
TCATTATTGTGTTCAAGAGA+TGG 0.511615 8_2:-14651684 None:intergenic
TGGAGGTGAAGTGGAAGTAA+GGG 0.513320 8_2:-14651075 None:intergenic
TCAATCCATGCCGTCAGTCT+AGG 0.513878 8_2:-14652462 None:intergenic
TAGACTGACGGCATGGATTG+AGG 0.527075 8_2:+14652464 Msa1236190:CDS
TATGATTCCTGGTCCCTGGA+TGG 0.532270 8_2:-14653110 None:intergenic
CTACTGTTGTCACGCGAACA+TGG 0.536329 8_2:-14650867 None:intergenic
TAATTCCAATTAATAACTAA+AGG 0.540446 8_2:+14653317 Msa1236190:three_prime_UTR
GGTTGAAATCTTTCCATGAA+AGG 0.546893 8_2:-14652396 None:intergenic
GGAGTCAAGAGTTCCAAAAT+GGG 0.549019 8_2:+14653058 Msa1236190:three_prime_UTR
CAGGGAATAAACAACATTGA+AGG 0.550138 8_2:+14652853 Msa1236190:intron
CGAAGGTGAAGCTTATTATG+AGG 0.551058 8_2:-14650814 None:intergenic
ACTTTGTCCTTGTACCAAGA+AGG 0.553580 8_2:-14651525 None:intergenic
CAGAATTAAACAGCCGTCGA+AGG 0.559797 8_2:-14650831 None:intergenic
ATTATGACATTACAGTGGGC+AGG 0.560090 8_2:+14652439 Msa1236190:CDS
ATTATATCCATCCAGGGACC+AGG 0.562197 8_2:+14653103 Msa1236190:three_prime_UTR
GGAGGTGAAGTGGAAGTAAG+GGG 0.562918 8_2:-14651074 None:intergenic
AGACAGACCTTCTTGGTACA+AGG 0.563276 8_2:+14651518 Msa1236190:CDS
CAGATATGGACATGAAAGGA+AGG 0.564706 8_2:-14650771 None:intergenic
TGAAGTTACTACTGAGGCAG+TGG 0.570588 8_2:+14653264 Msa1236190:three_prime_UTR
CCTTATTTGATGGAACCACC+AGG 0.579548 8_2:+14651102 Msa1236190:CDS
ATGGATTACCCGTAACACTA+AGG 0.580470 8_2:+14651262 Msa1236190:CDS
ATAATAAGCTTCACCTTCGA+CGG 0.588237 8_2:+14650818 Msa1236190:CDS
ACGGGTAATCCATACACGCT+GGG 0.590798 8_2:-14651252 None:intergenic
CCATCAAATAAGGAAGGTGG+AGG 0.604129 8_2:-14651092 None:intergenic
CAAAGTCTATCCACCCAACA+AGG 0.610295 8_2:+14651542 Msa1236190:CDS
AGATATGGACATGAAAGGAA+GGG 0.611763 8_2:-14650770 None:intergenic
TAATAAACATGCAAGTCACA+CGG 0.614141 8_2:-14653219 None:intergenic
TAATCAGTCTGTCTAGCGAT+CGG 0.615061 8_2:-14653142 None:intergenic
AGTGGGCAGGCCTAGACTGA+CGG 0.618947 8_2:+14652452 Msa1236190:CDS
GGGACCAGGAATCATACGAC+AGG 0.620691 8_2:+14653117 Msa1236190:three_prime_UTR
GTTCCATCAAATAAGGAAGG+TGG 0.631796 8_2:-14651095 None:intergenic
TACGGGTAATCCATACACGC+TGG 0.632731 8_2:-14651253 None:intergenic
ATGGCAGATATGGACATGAA+AGG 0.635823 8_2:-14650775 None:intergenic
AAATGCATTATATCCATCCA+GGG 0.637218 8_2:+14653097 Msa1236190:three_prime_UTR
ATAATATGAAGTTACTACTG+AGG 0.637899 8_2:+14653258 Msa1236190:three_prime_UTR
GTGGTTCCATCAAATAAGGA+AGG 0.639894 8_2:-14651098 None:intergenic
AATAAACATGCAAGTCACAC+GGG 0.644482 8_2:-14653218 None:intergenic
GGATAAATAACCTTGTTGGG+TGG 0.645523 8_2:-14651552 None:intergenic
AGGTGAATAGTGGAAATGGA+TGG 0.645679 8_2:-14650794 None:intergenic
ATTTGGAGAGAACAGTCTCA+AGG 0.647917 8_2:-14652201 None:intergenic
TCCATACACGCTGGGCATAG+GGG 0.648367 8_2:-14651244 None:intergenic
GCACCAGACTGAATTGGCCA+AGG 0.652421 8_2:-14652243 None:intergenic
GTTTGTTCTCAGTCTCAGCA+AGG 0.652630 8_2:+14650725 Msa1236190:CDS
GAAGAAGTAAACAAAATCTG+TGG 0.656679 8_2:-14650748 None:intergenic
CAACAGTAGCCATATCAACC+GGG 0.657885 8_2:+14650881 Msa1236190:CDS
CTAACTCCTTAGGATCAGAA+CGG 0.661345 8_2:-14652888 None:intergenic
GTTCTCTCCAAATATGATCG+AGG 0.666913 8_2:+14652211 Msa1236190:CDS
TCTCACACTAGGGTAAAGGG+AGG 0.686990 8_2:-14651763 None:intergenic
TTGATCTAGAGACAGTGCCA+TGG 0.690248 8_2:+14650565 Msa1236190:five_prime_UTR
GGTGAAGTGGAAGTAAGGGG+TGG 0.709587 8_2:-14651071 None:intergenic
CTCACACTAGGGTAAAGGGA+GGG 0.728160 8_2:-14651762 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAGTTTATGTTTATATTT+TGG - chr8_2:14651830-14651849 None:intergenic 10.0%
!! AACTTTACTATTTAATAAAT+AGG + chr8_2:14651843-14651862 Msa1236190:intron 10.0%
!! ACTTTACTATTTAATAAATA+GGG + chr8_2:14651844-14651863 Msa1236190:intron 10.0%
!! AATATTTCATGATATAATTA+TGG + chr8_2:14652543-14652562 Msa1236190:intron 10.0%
!! ATATTTCATGATATAATTAT+GGG + chr8_2:14652544-14652563 Msa1236190:intron 10.0%
!!! TTAATTTGTGTTAATTTGTT+TGG - chr8_2:14651155-14651174 None:intergenic 15.0%
!! TAACTTCATATTATAAACTT+TGG - chr8_2:14653252-14653271 None:intergenic 15.0%
!! TAATTCCAATTAATAACTAA+AGG + chr8_2:14653317-14653336 Msa1236190:three_prime_UTR 15.0%
!! TAAGGTTATTCTTCATATAT+TGG + chr8_2:14651280-14651299 Msa1236190:intron 20.0%
!!! TAAAACAAACACCTTTTTAA+CGG + chr8_2:14651392-14651411 Msa1236190:intron 20.0%
!!! TGATTTTCACACAATTTATT+TGG + chr8_2:14651419-14651438 Msa1236190:intron 20.0%
!!! AACAAAACATATCATTGTTT+TGG - chr8_2:14651591-14651610 None:intergenic 20.0%
!!! AAAAATCACTATTTAGAATG+TGG - chr8_2:14651631-14651650 None:intergenic 20.0%
!! ATTTATGTATTTCCAATTTC+AGG + chr8_2:14651659-14651678 Msa1236190:intron 20.0%
!!! CAAAGTTTTCTATTAATTTC+AGG + chr8_2:14652356-14652375 Msa1236190:intron 20.0%
!!! TTTTTCACATCCATTAAAAA+CGG - chr8_2:14652420-14652439 None:intergenic 20.0%
!! AAAAATTATGACATTACAGT+GGG + chr8_2:14652435-14652454 Msa1236190:CDS 20.0%
!! CTACATATAATAAAGGATTA+TGG - chr8_2:14653003-14653022 None:intergenic 20.0%
!! CATAATCCTTTATTATATGT+AGG + chr8_2:14653001-14653020 Msa1236190:intron 20.0%
! ATTCATTGTCATCATCATAT+AGG + chr8_2:14650655-14650674 Msa1236190:CDS 25.0%
! TCATCATCATATAGGAATTA+TGG + chr8_2:14650663-14650682 Msa1236190:CDS 25.0%
!!! GTATATACTGTTTTTACAAC+AGG - chr8_2:14651358-14651377 None:intergenic 25.0%
! AAAATCACAAACCGTTAAAA+AGG - chr8_2:14651406-14651425 None:intergenic 25.0%
! TAAGGATAAATAACCTTGTT+GGG - chr8_2:14651558-14651577 None:intergenic 25.0%
! ATAAGGATAAATAACCTTGT+TGG - chr8_2:14651559-14651578 None:intergenic 25.0%
!!! AACAATGATATGTTTTGTTG+TGG + chr8_2:14651592-14651611 Msa1236190:intron 25.0%
!! ATATAAAGTATCTCACACTA+GGG - chr8_2:14651776-14651795 None:intergenic 25.0%
!! AATATAAAGTATCTCACACT+AGG - chr8_2:14651777-14651796 None:intergenic 25.0%
!!! CACTTTTGATCTTTATTTTC+AGG + chr8_2:14651803-14651822 Msa1236190:intron 25.0%
!!! ACAGTTGTTGCTTATTTTAA+AGG + chr8_2:14651925-14651944 Msa1236190:CDS 25.0%
! TAGAAGAGAAATGTTAAATC+TGG + chr8_2:14652008-14652027 Msa1236190:intron 25.0%
! AAATGTTAAATCTGGAGAAA+GGG + chr8_2:14652016-14652035 Msa1236190:intron 25.0%
!! AGTTTTCTATTAATTTCAGG+TGG + chr8_2:14652359-14652378 Msa1236190:intron 25.0%
!!! AAGATTTCAACCGTTTTTAA+TGG + chr8_2:14652407-14652426 Msa1236190:CDS 25.0%
! GAAAAATTATGACATTACAG+TGG + chr8_2:14652434-14652453 Msa1236190:CDS 25.0%
! TAAAATTGTGCTCTTAATAC+AGG + chr8_2:14652834-14652853 Msa1236190:intron 25.0%
! AAAATTGTGCTCTTAATACA+GGG + chr8_2:14652835-14652854 Msa1236190:intron 25.0%
! GATTTGCCTACATATAATAA+AGG - chr8_2:14653010-14653029 None:intergenic 25.0%
! AAATCCATGAATTCAATGTT+TGG + chr8_2:14653025-14653044 Msa1236190:exon 25.0%
! CTAATCATCATTTCAATATG+TGG - chr8_2:14653184-14653203 None:intergenic 25.0%
! ATAATATGAAGTTACTACTG+AGG + chr8_2:14653258-14653277 Msa1236190:three_prime_UTR 25.0%
! TCAGACCTTTAGTTATTAAT+TGG - chr8_2:14653325-14653344 None:intergenic 25.0%
! TTAATAACTAAAGGTCTGAT+TGG + chr8_2:14653326-14653345 Msa1236190:three_prime_UTR 25.0%
!!! TCTATTTTTTAACGAACGTG+TGG - chr8_2:14650591-14650610 None:intergenic 30.0%
GTTCGTTAAAAAATAGAGTG+AGG + chr8_2:14650594-14650613 Msa1236190:five_prime_UTR 30.0%
GACTGAGAACAAACTATTAT+TGG - chr8_2:14650719-14650738 None:intergenic 30.0%
GAAGAAGTAAACAAAATCTG+TGG - chr8_2:14650751-14650770 None:intergenic 30.0%
AGATAAGAAAGTAAGAAACC+TGG - chr8_2:14651123-14651142 None:intergenic 30.0%
AAGAATAACCTTAGTGTTAC+GGG - chr8_2:14651273-14651292 None:intergenic 30.0%
GAAGAATAACCTTAGTGTTA+CGG - chr8_2:14651274-14651293 None:intergenic 30.0%
CAAGATCTCTATGTATGTTA+TGG + chr8_2:14651448-14651467 Msa1236190:intron 30.0%
!!! TGTTTTGGCACAAAGTTATA+AGG - chr8_2:14651576-14651595 None:intergenic 30.0%
TCATTATTGTGTTCAAGAGA+TGG - chr8_2:14651687-14651706 None:intergenic 30.0%
GAACACAATAATGAAGTTAG+AGG + chr8_2:14651693-14651712 Msa1236190:CDS 30.0%
TATATTGACACTCACTTTGA+AGG + chr8_2:14651738-14651757 Msa1236190:CDS 30.0%
GAAATGTTAAATCTGGAGAA+AGG + chr8_2:14652015-14652034 Msa1236190:intron 30.0%
AATGTTAAATCTGGAGAAAG+GGG + chr8_2:14652017-14652036 Msa1236190:intron 30.0%
AACCGTCATTTCATTGTTTA+GGG + chr8_2:14652045-14652064 Msa1236190:intron 30.0%
AAATGCATTATATCCATCCA+GGG + chr8_2:14653097-14653116 Msa1236190:three_prime_UTR 30.0%
! TTTCAATATGTGGCATTTTC+TGG - chr8_2:14653174-14653193 None:intergenic 30.0%
TAATAAACATGCAAGTCACA+CGG - chr8_2:14653222-14653241 None:intergenic 30.0%
AGATATGGACATGAAAGGAA+GGG - chr8_2:14650773-14650792 None:intergenic 35.0%
! TATGAGGTGAATAGTGGAAA+TGG - chr8_2:14650801-14650820 None:intergenic 35.0%
GCTTATTATGAGGTGAATAG+TGG - chr8_2:14650807-14650826 None:intergenic 35.0%
ATAATAAGCTTCACCTTCGA+CGG + chr8_2:14650818-14650837 Msa1236190:CDS 35.0%
TAAGAAAGTAAGAAACCTGG+TGG - chr8_2:14651120-14651139 None:intergenic 35.0%
!!! TACTGTTTTTACAACAGGAG+AGG - chr8_2:14651353-14651372 None:intergenic 35.0%
TCTATGTATGTTATGGAAGC+AGG + chr8_2:14651455-14651474 Msa1236190:intron 35.0%
CTATGTATGTTATGGAAGCA+GGG + chr8_2:14651456-14651475 Msa1236190:intron 35.0%
TAAATAGGGTCCTGATGATA+AGG + chr8_2:14651858-14651877 Msa1236190:intron 35.0%
!! TTTTAAAGGAGATGCAACTG+AGG + chr8_2:14651939-14651958 Msa1236190:CDS 35.0%
ATGTTAAATCTGGAGAAAGG+GGG + chr8_2:14652018-14652037 Msa1236190:intron 35.0%
GAACCGTCATTTCATTGTTT+AGG + chr8_2:14652044-14652063 Msa1236190:intron 35.0%
ACCGTCATTTCATTGTTTAG+GGG + chr8_2:14652046-14652065 Msa1236190:intron 35.0%
TCATTGTTTAGGGGGAAATA+AGG + chr8_2:14652055-14652074 Msa1236190:intron 35.0%
GTCAATAATGCACAGTATAG+TGG + chr8_2:14652292-14652311 Msa1236190:intron 35.0%
TATAGCATATGCTCCTTTCA+TGG + chr8_2:14652383-14652402 Msa1236190:CDS 35.0%
GGTTGAAATCTTTCCATGAA+AGG - chr8_2:14652399-14652418 None:intergenic 35.0%
CAATGAGTTTGCCATAATCA+TGG - chr8_2:14652682-14652701 None:intergenic 35.0%
TGTGATTTCAAGCATACACT+TGG + chr8_2:14652700-14652719 Msa1236190:intron 35.0%
CTAACGTAGACCAATAAAGA+TGG + chr8_2:14652734-14652753 Msa1236190:intron 35.0%
ACCAATAAAGATGGAACCTT+GGG + chr8_2:14652743-14652762 Msa1236190:intron 35.0%
TATTCATCATGTCATACCCA+AGG - chr8_2:14652762-14652781 None:intergenic 35.0%
TGACATGATGAATATGTCAC+AGG + chr8_2:14652768-14652787 Msa1236190:intron 35.0%
TTAATTCTTGAGTGAAGCTC+AGG - chr8_2:14652817-14652836 None:intergenic 35.0%
CAGGGAATAAACAACATTGA+AGG + chr8_2:14652853-14652872 Msa1236190:intron 35.0%
TAGCTTTCAACTAACTCCTT+AGG - chr8_2:14652901-14652920 None:intergenic 35.0%
! TAGTTCTGTCTTATGATACC+AGG - chr8_2:14652936-14652955 None:intergenic 35.0%
GATGCCAAACATTGAATTCA+TGG - chr8_2:14653032-14653051 None:intergenic 35.0%
TCAATGTTTGGCATCATAGT+AGG + chr8_2:14653037-14653056 Msa1236190:three_prime_UTR 35.0%
! TCTGATTTTCTGACCCATTT+TGG - chr8_2:14653074-14653093 None:intergenic 35.0%
CAAATGCATTATATCCATCC+AGG + chr8_2:14653096-14653115 Msa1236190:three_prime_UTR 35.0%
AATAAACATGCAAGTCACAC+GGG - chr8_2:14653221-14653240 None:intergenic 35.0%
AGTGGCAAAGTAAACTGTTT+GGG + chr8_2:14653282-14653301 Msa1236190:three_prime_UTR 35.0%
CAGATATGGACATGAAAGGA+AGG - chr8_2:14650774-14650793 None:intergenic 40.0%
ATGGCAGATATGGACATGAA+AGG - chr8_2:14650778-14650797 None:intergenic 40.0%
! AGGTGAATAGTGGAAATGGA+TGG - chr8_2:14650797-14650816 None:intergenic 40.0%
CGAAGGTGAAGCTTATTATG+AGG - chr8_2:14650817-14650836 None:intergenic 40.0%
ACAACAGTAGCCATATCAAC+CGG + chr8_2:14650880-14650899 Msa1236190:CDS 40.0%
GTTCCATCAAATAAGGAAGG+TGG - chr8_2:14651098-14651117 None:intergenic 40.0%
GTGGTTCCATCAAATAAGGA+AGG - chr8_2:14651101-14651120 None:intergenic 40.0%
! ATGGATTACCCGTAACACTA+AGG + chr8_2:14651262-14651281 Msa1236190:CDS 40.0%
GGTCTGTCTTGTAGATCAAT+GGG - chr8_2:14651507-14651526 None:intergenic 40.0%
AGGTCTGTCTTGTAGATCAA+TGG - chr8_2:14651508-14651527 None:intergenic 40.0%
ATCTACAAGACAGACCTTCT+TGG + chr8_2:14651511-14651530 Msa1236190:CDS 40.0%
ACTTTGTCCTTGTACCAAGA+AGG - chr8_2:14651528-14651547 None:intergenic 40.0%
GGATAAATAACCTTGTTGGG+TGG - chr8_2:14651555-14651574 None:intergenic 40.0%
CAAGAGATGGAACCTGAAAT+TGG - chr8_2:14651674-14651693 None:intergenic 40.0%
GTATCTCACACTAGGGTAAA+GGG - chr8_2:14651769-14651788 None:intergenic 40.0%
AGTATCTCACACTAGGGTAA+AGG - chr8_2:14651770-14651789 None:intergenic 40.0%
TCAGCAAACTCCTTATCATC+AGG - chr8_2:14651871-14651890 None:intergenic 40.0%
CCCCCTAAACAATGAAATGA+CGG - chr8_2:14652050-14652069 None:intergenic 40.0%
CCGTCATTTCATTGTTTAGG+GGG + chr8_2:14652047-14652066 Msa1236190:intron 40.0%
TCACGTTACACTGCTTCATT+AGG + chr8_2:14652163-14652182 Msa1236190:intron 40.0%
ATTTGGAGAGAACAGTCTCA+AGG - chr8_2:14652204-14652223 None:intergenic 40.0%
GTTCTCTCCAAATATGATCG+AGG + chr8_2:14652211-14652230 Msa1236190:CDS 40.0%
GAAAGGTCCTCGATCATATT+TGG - chr8_2:14652221-14652240 None:intergenic 40.0%
ATTATGACATTACAGTGGGC+AGG + chr8_2:14652439-14652458 Msa1236190:CDS 40.0%
!! ATTGCATCGAGGTCGTTTTA+TGG + chr8_2:14652580-14652599 Msa1236190:intron 40.0%
ATCCAAACGTCACTAACTTC+TGG - chr8_2:14652629-14652648 None:intergenic 40.0%
AGTTAGTGACGTTTGGATTC+AGG + chr8_2:14652631-14652650 Msa1236190:intron 40.0%
GTTAGTGACGTTTGGATTCA+GGG + chr8_2:14652632-14652651 Msa1236190:intron 40.0%
! ATCATGGTGGCATCATGTTT+TGG - chr8_2:14652666-14652685 None:intergenic 40.0%
ACATGATGCCACCATGATTA+TGG + chr8_2:14652668-14652687 Msa1236190:intron 40.0%
TGAGTTTGCCATAATCATGG+TGG - chr8_2:14652679-14652698 None:intergenic 40.0%
CAAGCATACACTTGGACATT+AGG + chr8_2:14652708-14652727 Msa1236190:intron 40.0%
GACCAATAAAGATGGAACCT+TGG + chr8_2:14652742-14652761 Msa1236190:intron 40.0%
ACCCAAGGTTCCATCTTTAT+TGG - chr8_2:14652747-14652766 None:intergenic 40.0%
AATAACCCGTTCTGATCCTA+AGG + chr8_2:14652882-14652901 Msa1236190:CDS 40.0%
TAACTCCTTAGGATCAGAAC+GGG - chr8_2:14652890-14652909 None:intergenic 40.0%
CTAACTCCTTAGGATCAGAA+CGG - chr8_2:14652891-14652910 None:intergenic 40.0%
AGGAGTCAAGAGTTCCAAAA+TGG + chr8_2:14653057-14653076 Msa1236190:three_prime_UTR 40.0%
GGAGTCAAGAGTTCCAAAAT+GGG + chr8_2:14653058-14653077 Msa1236190:three_prime_UTR 40.0%
TAATCAGTCTGTCTAGCGAT+CGG - chr8_2:14653145-14653164 None:intergenic 40.0%
CAGTGGCAAAGTAAACTGTT+TGG + chr8_2:14653281-14653300 Msa1236190:three_prime_UTR 40.0%
TTGATCTAGAGACAGTGCCA+TGG + chr8_2:14650565-14650584 Msa1236190:five_prime_UTR 45.0%
! TTTTAACGAACGTGTGGCCA+TGG - chr8_2:14650585-14650604 None:intergenic 45.0%
GTTTGTTCTCAGTCTCAGCA+AGG + chr8_2:14650725-14650744 Msa1236190:CDS 45.0%
GTGGAAATGGATGGCAGATA+TGG - chr8_2:14650788-14650807 None:intergenic 45.0%
CAGAATTAAACAGCCGTCGA+AGG - chr8_2:14650834-14650853 None:intergenic 45.0%
CAACAGTAGCCATATCAACC+GGG + chr8_2:14650881-14650900 Msa1236190:CDS 45.0%
TGGAGGTGAAGTGGAAGTAA+GGG - chr8_2:14651078-14651097 None:intergenic 45.0%
CCATCAAATAAGGAAGGTGG+AGG - chr8_2:14651095-14651114 None:intergenic 45.0%
! CCTCCACCTTCCTTATTTGA+TGG + chr8_2:14651092-14651111 Msa1236190:CDS 45.0%
CCTGGTGGTTCCATCAAATA+AGG - chr8_2:14651105-14651124 None:intergenic 45.0%
! CCTTATTTGATGGAACCACC+AGG + chr8_2:14651102-14651121 Msa1236190:CDS 45.0%
TGTGACTGTGACTGAACTGA+AGG + chr8_2:14651201-14651220 Msa1236190:intron 45.0%
AGACAGACCTTCTTGGTACA+AGG + chr8_2:14651518-14651537 Msa1236190:CDS 45.0%
CAAAGTCTATCCACCCAACA+AGG + chr8_2:14651542-14651561 Msa1236190:CDS 45.0%
TGAAGTTAGAGGAGAGAGTC+TGG + chr8_2:14651704-14651723 Msa1236190:CDS 45.0%
CTGAATTGGCCAAGGAAGAA+AGG - chr8_2:14652238-14652257 None:intergenic 45.0%
GTATACGCACCAGACTGAAT+TGG - chr8_2:14652252-14652271 None:intergenic 45.0%
ATCTACCTGTCATTGCATCG+AGG + chr8_2:14652569-14652588 Msa1236190:intron 45.0%
GTCCAGAAGTTAGTGACGTT+TGG + chr8_2:14652624-14652643 Msa1236190:intron 45.0%
AAGCTACAAGAAGCGATTCC+TGG + chr8_2:14652915-14652934 Msa1236190:CDS 45.0%
ATTATATCCATCCAGGGACC+AGG + chr8_2:14653103-14653122 Msa1236190:three_prime_UTR 45.0%
TGAAGTTACTACTGAGGCAG+TGG + chr8_2:14653264-14653283 Msa1236190:three_prime_UTR 45.0%
CTACTGTTGTCACGCGAACA+TGG - chr8_2:14650870-14650889 None:intergenic 50.0%
! GCAGACATACCCGGTTGATA+TGG - chr8_2:14650893-14650912 None:intergenic 50.0%
GGAGGTGAAGTGGAAGTAAG+GGG - chr8_2:14651077-14651096 None:intergenic 50.0%
GTGGAGGTGAAGTGGAAGTA+AGG - chr8_2:14651079-14651098 None:intergenic 50.0%
TAAGGAAGGTGGAGGTGAAG+TGG - chr8_2:14651087-14651106 None:intergenic 50.0%
ATCCATACACGCTGGGCATA+GGG - chr8_2:14651248-14651267 None:intergenic 50.0%
AATCCATACACGCTGGGCAT+AGG - chr8_2:14651249-14651268 None:intergenic 50.0%
ACGGGTAATCCATACACGCT+GGG - chr8_2:14651255-14651274 None:intergenic 50.0%
TACGGGTAATCCATACACGC+TGG - chr8_2:14651256-14651275 None:intergenic 50.0%
GTTATGGAAGCAGGGATTGC+AGG + chr8_2:14651464-14651483 Msa1236190:intron 50.0%
CTCACACTAGGGTAAAGGGA+GGG - chr8_2:14651765-14651784 None:intergenic 50.0%
TCTCACACTAGGGTAAAGGG+AGG - chr8_2:14651766-14651785 None:intergenic 50.0%
AAAGGAGATGCAACTGAGGC+TGG + chr8_2:14651943-14651962 Msa1236190:CDS 50.0%
GATCGAGGACCTTTCTTCCT+TGG + chr8_2:14652226-14652245 Msa1236190:CDS 50.0%
CTTCCTTGGCCAATTCAGTC+TGG + chr8_2:14652240-14652259 Msa1236190:CDS 50.0%
TCAATCCATGCCGTCAGTCT+AGG - chr8_2:14652465-14652484 None:intergenic 50.0%
! TAGACTGACGGCATGGATTG+AGG + chr8_2:14652464-14652483 Msa1236190:CDS 50.0%
AACGACCTCGATGCAATGAC+AGG - chr8_2:14652577-14652596 None:intergenic 50.0%
ACTAACTTCTGGACACGCTG+TGG - chr8_2:14652618-14652637 None:intergenic 50.0%
TATGATTCCTGGTCCCTGGA+TGG - chr8_2:14653113-14653132 None:intergenic 50.0%
AGCAGGCAAGCAGACATACC+CGG - chr8_2:14650902-14650921 None:intergenic 55.0%
GTATGTCTGCTTGCCTGCTG+AGG + chr8_2:14650903-14650922 Msa1236190:intron 55.0%
! TCAGCTTAGCTAGCCTCAGC+AGG - chr8_2:14650919-14650938 None:intergenic 55.0%
GAAGTGGAAGTAAGGGGTGG+TGG - chr8_2:14651071-14651090 None:intergenic 55.0%
GGTGAAGTGGAAGTAAGGGG+TGG - chr8_2:14651074-14651093 None:intergenic 55.0%
!! CTGGGCATAGGGGCATTTGT+AGG - chr8_2:14651237-14651256 None:intergenic 55.0%
TCCATACACGCTGGGCATAG+GGG - chr8_2:14651247-14651266 None:intergenic 55.0%
GCACCAGACTGAATTGGCCA+AGG - chr8_2:14652246-14652265 None:intergenic 55.0%
GTCGTATGATTCCTGGTCCC+TGG - chr8_2:14653117-14653136 None:intergenic 55.0%
GGGACCAGGAATCATACGAC+AGG + chr8_2:14653117-14653136 Msa1236190:three_prime_UTR 55.0%
GGTGCCTGTCGTATGATTCC+TGG - chr8_2:14653124-14653143 None:intergenic 55.0%
AGTGGGCAGGCCTAGACTGA+CGG + chr8_2:14652452-14652471 Msa1236190:CDS 60.0%
GCCCCTATGCCCAGCGTGTA+TGG + chr8_2:14651243-14651262 Msa1236190:CDS 65.0%
GCAGGCCTAGACTGACGGCA+TGG + chr8_2:14652457-14652476 Msa1236190:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 14650552 14653400 14650552 ID=Msa1236190;Name=Msa1236190
chr8_2 mRNA 14650552 14653400 14650552 ID=Msa1236190-mRNA-1;Parent=Msa1236190;Name=Msa1236190-mRNA-1;_AED=0.22;_eAED=0.22;_QI=97|1|1|1|1|1|10|366|317
chr8_2 exon 14650552 14650902 14650552 ID=Msa1236190-mRNA-1:exon:5660;Parent=Msa1236190-mRNA-1
chr8_2 exon 14651049 14651123 14651049 ID=Msa1236190-mRNA-1:exon:5661;Parent=Msa1236190-mRNA-1
chr8_2 exon 14651223 14651283 14651223 ID=Msa1236190-mRNA-1:exon:5662;Parent=Msa1236190-mRNA-1
chr8_2 exon 14651477 14651563 14651477 ID=Msa1236190-mRNA-1:exon:5663;Parent=Msa1236190-mRNA-1
chr8_2 exon 14651681 14651779 14651681 ID=Msa1236190-mRNA-1:exon:5664;Parent=Msa1236190-mRNA-1
chr8_2 exon 14651865 14651964 14651865 ID=Msa1236190-mRNA-1:exon:5665;Parent=Msa1236190-mRNA-1
chr8_2 exon 14652185 14652261 14652185 ID=Msa1236190-mRNA-1:exon:5666;Parent=Msa1236190-mRNA-1
chr8_2 exon 14652378 14652485 14652378 ID=Msa1236190-mRNA-1:exon:5667;Parent=Msa1236190-mRNA-1
chr8_2 exon 14652856 14652936 14652856 ID=Msa1236190-mRNA-1:exon:5668;Parent=Msa1236190-mRNA-1
chr8_2 exon 14653023 14653400 14653023 ID=Msa1236190-mRNA-1:exon:5669;Parent=Msa1236190-mRNA-1
chr8_2 five_prime_UTR 14650552 14650648 14650552 ID=Msa1236190-mRNA-1:five_prime_utr;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14650649 14650902 14650649 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14651049 14651123 14651049 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14651223 14651283 14651223 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14651477 14651563 14651477 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14651681 14651779 14651681 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14651865 14651964 14651865 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14652185 14652261 14652185 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14652378 14652485 14652378 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14652856 14652936 14652856 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 CDS 14653023 14653034 14653023 ID=Msa1236190-mRNA-1:cds;Parent=Msa1236190-mRNA-1
chr8_2 three_prime_UTR 14653035 14653400 14653035 ID=Msa1236190-mRNA-1:three_prime_utr;Parent=Msa1236190-mRNA-1
Gene Sequence

>Msa1236190

ATGAATATTCATTGTCATCATCATATAGGAATTATGGCTATATCATCATCATCATCATCATTATTAACCAATAATAGTTTGTTCTCAGTCTCAGCAAGGCCACAGATTTTGTTTACTTCTTCCCTTCCTTTCATGTCCATATCTGCCATCCATTTCCACTATTCACCTCATAATAAGCTTCACCTTCGACGGCTGTTTAATTCTGTTACAAAATCGTGCCATGTTCGCGTGACAACAGTAGCCATATCAACCGGAAGTGTGCAAGAAGTTCTTCCACCACCCCTTACTTCCACTTCACCTCCACCTTCCTTATTTGATGGAACCACCAGGTTGTATATCTCCTACAAATGCCCCTATGCCCAGCGTGTATGGATTACCCGTAACACTAAGGGATTGCAGGACAAGATACAGTTAGTTCCCATTGATCTACAAGACAGACCTTCTTGGTACAAGGACAAAGTCTATCCACCCAACAAGGTTCCATCTCTTGAACACAATAATGAAGTTAGAGGAGAGAGTCTGGATCTGATTAAATATATTGACACTCACTTTGAAGGACCCTCCCTTTACCCTAGTGGTCCTGATGATAAGGAGTTTGCTGAAGAGTTGCTATCTTACACAGATACATTTTACAAGACAGTTGTTGCTTATTTTAAAGGAGATGCAACTGAGGCTGGCACTGCATTTGATTACCTTGAGACTGTTCTCTCCAAATATGATCGAGGACCTTTCTTCCTTGGCCAATTCAGTCTGGTGGATATAGCATATGCTCCTTTCATGGAAAGATTTCAACCGTTTTTAATGGATGTGAAAAATTATGACATTACAGTGGGCAGGCCTAGACTGACGGCATGGATTGAGGGAATAAACAACATTGAAGGCTACAAAATAACCCGTTCTGATCCTAAGGAGTTAGTTGAAAGCTACAAGAAGCGATTCCTGGCAAATCCATGA

Protein sequence

>Msa1236190

MNIHCHHHIGIMAISSSSSSLLTNNSLFSVSARPQILFTSSLPFMSISAIHFHYSPHNKLHLRRLFNSVTKSCHVRVTTVAISTGSVQEVLPPPLTSTSPPPSLFDGTTRLYISYKCPYAQRVWITRNTKGLQDKIQLVPIDLQDRPSWYKDKVYPPNKVPSLEHNNEVRGESLDLIKYIDTHFEGPSLYPSGPDDKEFAEELLSYTDTFYKTVVAYFKGDATEAGTAFDYLETVLSKYDRGPFFLGQFSLVDIAYAPFMERFQPFLMDVKNYDITVGRPRLTAWIEGINNIEGYKITRSDPKELVESYKKRFLANP*