AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0174060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174060 MtrunA17_Chr1g0194341 94.737 190 10 0 3 192 25 214 2.68e-131 369
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0174060 AT4G01935.1 66.854 178 58 1 16 192 36 213 3.36e-82 245

Find 55 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTAATGCTTTACTTCATTA+AGG 0.194939 1_4:-59555328 None:intergenic
TTGATAGGTTCCTCCCTTGC+TGG 0.255596 1_4:+59554708 Msa0174060:intron
CAAGCTAACATTGAAATCTT+TGG 0.287614 1_4:+59555446 Msa0174060:CDS
CTCGACGTTGTCTGCTATTC+CGG 0.310376 1_4:-59555193 None:intergenic
CTTTCAGGTTCCTTCACCTT+TGG 0.316840 1_4:+59555414 Msa0174060:intron
TTCACCCTCTCATGCATTGT+TGG 0.330593 1_4:+59555279 Msa0174060:CDS
TCACCCTCTCATGCATTGTT+GGG 0.346406 1_4:+59555280 Msa0174060:CDS
ATGAAGCTGTAACGCTAGTT+TGG 0.368316 1_4:-59554350 None:intergenic
AAACTAGCGTTACAGCTTCA+TGG 0.374325 1_4:+59554352 Msa0174060:CDS
GTAATGCTTTACTTCATTAA+GGG 0.376469 1_4:-59555327 None:intergenic
TTCGGCACAGGATTCGTGTT+TGG 0.393428 1_4:+59554396 Msa0174060:CDS
TGATAGGTTCCTCCCTTGCT+GGG 0.401780 1_4:+59554709 Msa0174060:intron
GCCCACTCCATACAAACATC+TGG 0.405704 1_4:+59554487 Msa0174060:CDS
ACTCCACACAGTACGCAAAC+GGG 0.436084 1_4:+59554290 Msa0174060:intron
TTGCAGCAGCAGAGTTCCTA+TGG 0.440373 1_4:+59555229 Msa0174060:CDS
AACTCCACACAGTACGCAAA+CGG 0.451385 1_4:+59554289 Msa0174060:intron
TTGTTGAATGGAACATGGCC+AGG 0.462568 1_4:+59555255 Msa0174060:CDS
CGTGTGTCACTTTCACTCTT+CGG 0.485963 1_4:+59554378 Msa0174060:CDS
ACCCAGATGTTTGTATGGAG+TGG 0.485990 1_4:-59554489 None:intergenic
TCACTTTCACTCTTCGGCAC+AGG 0.486315 1_4:+59554384 Msa0174060:CDS
TAACATTGAAATCTTTGGCC+AGG 0.494482 1_4:+59555451 Msa0174060:CDS
ACCCTACCCAGATGTTTGTA+TGG 0.505555 1_4:-59554494 None:intergenic
TTCAACTCTACCTTGATGAG+AGG 0.524503 1_4:+59554758 Msa0174060:CDS
GTGTTTGGTCCACTTCTCGA+TGG 0.525210 1_4:+59554411 Msa0174060:CDS
TGTTTAAGACCCTCTCATCA+AGG 0.536972 1_4:-59554768 None:intergenic
ATGCATGAGAGGGTGAAGCC+TGG 0.537143 1_4:-59555273 None:intergenic
CCCAGATGTTTGTATGGAGT+GGG 0.545906 1_4:-59554488 None:intergenic
GGCTCTGCTGATTGACAGCA+CGG 0.546704 1_4:-59554329 None:intergenic
GAACTCGTTTCGTACAAGTT+CGG 0.548080 1_4:+59554450 Msa0174060:CDS
AAGATTTCAATGTTAGCTTG+AGG 0.553858 1_4:-59555443 None:intergenic
CAAACCCAACAATGCATGAG+AGG 0.555759 1_4:-59555284 None:intergenic
TAAAACAACCCCAGCAAGGG+AGG 0.558692 1_4:-59554718 None:intergenic
GATAGGTTCCTCCCTTGCTG+GGG 0.563080 1_4:+59554710 Msa0174060:intron
CAGTAAAACAACCCCAGCAA+GGG 0.570370 1_4:-59554721 None:intergenic
GGTCTTAAACAAAGTTCAAG+AGG 0.574160 1_4:+59554780 Msa0174060:CDS
TGCTGCTGCAAATAATATGT+AGG 0.583565 1_4:-59555217 None:intergenic
CCCACTCCATACAAACATCT+GGG 0.584936 1_4:+59554488 Msa0174060:CDS
AAACGAGTTCGACTCTCGAA+TGG 0.588877 1_4:-59554437 None:intergenic
GCAGTAAAACAACCCCAGCA+AGG 0.592268 1_4:-59554722 None:intergenic
TCAACTCTACCTTGATGAGA+GGG 0.596716 1_4:+59554759 Msa0174060:CDS
AGTGCTGAACTATACAAAGC+CGG 0.608175 1_4:+59555174 Msa0174060:CDS
GAGGATAGTACCAAAGGTGA+AGG 0.610524 1_4:-59555424 None:intergenic
AGTTTATGTCGCTCAAACAG+AGG 0.616371 1_4:+59555776 Msa0174060:CDS
GAATGGAGTCCATCGAGAAG+TGG 0.618017 1_4:-59554420 None:intergenic
TAGTCCCAGATTAAAATGCA+AGG 0.620710 1_4:+59553944 None:intergenic
TAGCTTGAGGATAGTACCAA+AGG 0.624101 1_4:-59555430 None:intergenic
TGCTGATTGACAGCACGGTG+AGG 0.625751 1_4:-59554324 None:intergenic
AAGTTCGGAGCAATTGACAT+TGG 0.628907 1_4:+59554465 Msa0174060:CDS
ATTAAGGGTATCTCAGCTAG+TGG 0.632261 1_4:-59555312 None:intergenic
CTCCACACAGTACGCAAACG+GGG 0.633266 1_4:+59554291 Msa0174060:intron
AAACCCAACAATGCATGAGA+GGG 0.633565 1_4:-59555283 None:intergenic
GTCTTAAACAAAGTTCAAGA+GGG 0.663204 1_4:+59554781 Msa0174060:CDS
CGGAATAGCAGACAACGTCG+AGG 0.727407 1_4:+59555194 Msa0174060:CDS
AGTGAGTACTTACATCAGGG+AGG 0.750946 1_4:-59554824 None:intergenic
AAGAGTGAAAGTGACACACG+AGG 0.759053 1_4:-59554375 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAACTAAACAAATTAA+TGG - chr1_4:59554926-59554945 None:intergenic 10.0%
!! AATATAACTAAACAAATTAA+TGG - chr1_4:59554926-59554945 None:intergenic 10.0%
!!! AAAAACCATATAATTTTATG+CGG + chr1_4:59554584-59554603 Msa0174060:intron 15.0%
!! TCAAAACAATTTAATCAAAT+TGG + chr1_4:59555034-59555053 Msa0174060:intron 15.0%
!! TATGAAATCAAACATAATTT+GGG + chr1_4:59555110-59555129 Msa0174060:intron 15.0%
!!! AAAAACCATATAATTTTATG+CGG + chr1_4:59554584-59554603 Msa0174060:intron 15.0%
!! TCAAAACAATTTAATCAAAT+TGG + chr1_4:59555034-59555053 Msa0174060:intron 15.0%
!! TATGAAATCAAACATAATTT+GGG + chr1_4:59555110-59555129 Msa0174060:intron 15.0%
!! TGTTATAAGCTAATATGAAT+AGG - chr1_4:59554995-59555014 None:intergenic 20.0%
!! GTATGAAATCAAACATAATT+TGG + chr1_4:59555109-59555128 Msa0174060:intron 20.0%
!! ATGAAATCAAACATAATTTG+GGG + chr1_4:59555111-59555130 Msa0174060:intron 20.0%
!!! TTCATTTTCTCTACTTATTA+AGG - chr1_4:59555557-59555576 None:intergenic 20.0%
!!! TCTTCTTAATTAATTTGTCA+CGG + chr1_4:59555742-59555761 Msa0174060:intron 20.0%
!! TGTTATAAGCTAATATGAAT+AGG - chr1_4:59554995-59555014 None:intergenic 20.0%
!! GTATGAAATCAAACATAATT+TGG + chr1_4:59555109-59555128 Msa0174060:intron 20.0%
!! ATGAAATCAAACATAATTTG+GGG + chr1_4:59555111-59555130 Msa0174060:intron 20.0%
!!! TTCATTTTCTCTACTTATTA+AGG - chr1_4:59555557-59555576 None:intergenic 20.0%
!!! TCTTCTTAATTAATTTGTCA+CGG + chr1_4:59555742-59555761 Msa0174060:intron 20.0%
! GTACCTAGAAAAAAAATTCA+AGG + chr1_4:59553974-59553993 Msa0174060:intron 25.0%
!!! AGTCCTTGAATTTTTTTTCT+AGG - chr1_4:59553980-59553999 None:intergenic 25.0%
! AAAATTCAAGGACTGTATAT+TGG + chr1_4:59553986-59554005 Msa0174060:intron 25.0%
! AAGTGCCATAGTTAATAATT+TGG - chr1_4:59554032-59554051 None:intergenic 25.0%
!!! GTAGAAAATGATTGGTTTTT+GGG - chr1_4:59554182-59554201 None:intergenic 25.0%
!!! AGTAGAAAATGATTGGTTTT+TGG - chr1_4:59554183-59554202 None:intergenic 25.0%
! TTACCTTGTAACAGTATAAT+TGG + chr1_4:59554653-59554672 Msa0174060:intron 25.0%
! TTGTCCAAATTGATATTGAT+AGG + chr1_4:59554693-59554712 Msa0174060:intron 25.0%
! GTAATGCTTTACTTCATTAA+GGG - chr1_4:59555330-59555349 None:intergenic 25.0%
! AGTAATGCTTTACTTCATTA+AGG - chr1_4:59555331-59555350 None:intergenic 25.0%
!! TCTCACAGTTTAAATTTGTT+TGG + chr1_4:59555357-59555376 Msa0174060:intron 25.0%
!! TAAATTTGTTTGGCTATTGA+TGG + chr1_4:59555367-59555386 Msa0174060:intron 25.0%
! GATTGTAACTTAAAGATAGT+TGG - chr1_4:59555488-59555507 None:intergenic 25.0%
! ATGAATTCTATTCTATGTGT+AGG + chr1_4:59555677-59555696 Msa0174060:intron 25.0%
! TGAATTCTATTCTATGTGTA+GGG + chr1_4:59555678-59555697 Msa0174060:intron 25.0%
! GTACCTAGAAAAAAAATTCA+AGG + chr1_4:59553974-59553993 Msa0174060:intron 25.0%
!!! AGTCCTTGAATTTTTTTTCT+AGG - chr1_4:59553980-59553999 None:intergenic 25.0%
! AAAATTCAAGGACTGTATAT+TGG + chr1_4:59553986-59554005 Msa0174060:intron 25.0%
! AAGTGCCATAGTTAATAATT+TGG - chr1_4:59554032-59554051 None:intergenic 25.0%
!!! GTAGAAAATGATTGGTTTTT+GGG - chr1_4:59554182-59554201 None:intergenic 25.0%
!!! AGTAGAAAATGATTGGTTTT+TGG - chr1_4:59554183-59554202 None:intergenic 25.0%
! TTACCTTGTAACAGTATAAT+TGG + chr1_4:59554653-59554672 Msa0174060:intron 25.0%
! TTGTCCAAATTGATATTGAT+AGG + chr1_4:59554693-59554712 Msa0174060:intron 25.0%
! GTAATGCTTTACTTCATTAA+GGG - chr1_4:59555330-59555349 None:intergenic 25.0%
! AGTAATGCTTTACTTCATTA+AGG - chr1_4:59555331-59555350 None:intergenic 25.0%
!! TCTCACAGTTTAAATTTGTT+TGG + chr1_4:59555357-59555376 Msa0174060:intron 25.0%
!! TAAATTTGTTTGGCTATTGA+TGG + chr1_4:59555367-59555386 Msa0174060:intron 25.0%
! GATTGTAACTTAAAGATAGT+TGG - chr1_4:59555488-59555507 None:intergenic 25.0%
! ATGAATTCTATTCTATGTGT+AGG + chr1_4:59555677-59555696 Msa0174060:intron 25.0%
! TGAATTCTATTCTATGTGTA+GGG + chr1_4:59555678-59555697 Msa0174060:intron 25.0%
GTATATTGGAATTCCTGAAA+AGG + chr1_4:59554000-59554019 Msa0174060:intron 30.0%
CGTCACCAAATTATTAACTA+TGG + chr1_4:59554024-59554043 Msa0174060:intron 30.0%
CTTCAAATCTTCAATTGTGT+TGG + chr1_4:59554049-59554068 Msa0174060:intron 30.0%
ACAACGAAGTAGAAAATGAT+TGG - chr1_4:59554190-59554209 None:intergenic 30.0%
ATGCAATACCTTCTTTCATT+TGG + chr1_4:59554240-59554259 Msa0174060:intron 30.0%
TATAAGCCTCAAAAGATGAA+GGG - chr1_4:59554269-59554288 None:intergenic 30.0%
TTATAAGCCTCAAAAGATGA+AGG - chr1_4:59554270-59554289 None:intergenic 30.0%
!!! GTTTTTTCGAAGCATACTTT+CGG - chr1_4:59554570-59554589 None:intergenic 30.0%
TCAGACCGCATAAAATTATA+TGG - chr1_4:59554592-59554611 None:intergenic 30.0%
GGAACCTATCAATATCAATT+TGG - chr1_4:59554700-59554719 None:intergenic 30.0%
GTCTTAAACAAAGTTCAAGA+GGG + chr1_4:59554781-59554800 Msa0174060:CDS 30.0%
TTGATTTCATACAATGCGTT+TGG - chr1_4:59555101-59555120 None:intergenic 30.0%
! TTCCTATGGTTTTTGTTGAA+TGG + chr1_4:59555243-59555262 Msa0174060:CDS 30.0%
TTCCATTCAACAAAAACCAT+AGG - chr1_4:59555248-59555267 None:intergenic 30.0%
! AAGATTTCAATGTTAGCTTG+AGG - chr1_4:59555446-59555465 None:intergenic 30.0%
CAAGCTAACATTGAAATCTT+TGG + chr1_4:59555446-59555465 Msa0174060:CDS 30.0%
TTTCATATTGTTGTCGTGTT+TGG - chr1_4:59555624-59555643 None:intergenic 30.0%
ACGACAACAATATGAAATGT+TGG + chr1_4:59555627-59555646 Msa0174060:intron 30.0%
!! TCTTAATTAATTTGTCACGG+TGG + chr1_4:59555745-59555764 Msa0174060:intron 30.0%
GTATATTGGAATTCCTGAAA+AGG + chr1_4:59554000-59554019 Msa0174060:intron 30.0%
CGTCACCAAATTATTAACTA+TGG + chr1_4:59554024-59554043 Msa0174060:intron 30.0%
CTTCAAATCTTCAATTGTGT+TGG + chr1_4:59554049-59554068 Msa0174060:intron 30.0%
ACAACGAAGTAGAAAATGAT+TGG - chr1_4:59554190-59554209 None:intergenic 30.0%
ATGCAATACCTTCTTTCATT+TGG + chr1_4:59554240-59554259 Msa0174060:intron 30.0%
TATAAGCCTCAAAAGATGAA+GGG - chr1_4:59554269-59554288 None:intergenic 30.0%
TTATAAGCCTCAAAAGATGA+AGG - chr1_4:59554270-59554289 None:intergenic 30.0%
!!! GTTTTTTCGAAGCATACTTT+CGG - chr1_4:59554570-59554589 None:intergenic 30.0%
TCAGACCGCATAAAATTATA+TGG - chr1_4:59554592-59554611 None:intergenic 30.0%
GGAACCTATCAATATCAATT+TGG - chr1_4:59554700-59554719 None:intergenic 30.0%
GTCTTAAACAAAGTTCAAGA+GGG + chr1_4:59554781-59554800 Msa0174060:CDS 30.0%
TTGATTTCATACAATGCGTT+TGG - chr1_4:59555101-59555120 None:intergenic 30.0%
! TTCCTATGGTTTTTGTTGAA+TGG + chr1_4:59555243-59555262 Msa0174060:CDS 30.0%
TTCCATTCAACAAAAACCAT+AGG - chr1_4:59555248-59555267 None:intergenic 30.0%
! AAGATTTCAATGTTAGCTTG+AGG - chr1_4:59555446-59555465 None:intergenic 30.0%
CAAGCTAACATTGAAATCTT+TGG + chr1_4:59555446-59555465 Msa0174060:CDS 30.0%
TTTCATATTGTTGTCGTGTT+TGG - chr1_4:59555624-59555643 None:intergenic 30.0%
ACGACAACAATATGAAATGT+TGG + chr1_4:59555627-59555646 Msa0174060:intron 30.0%
!! TCTTAATTAATTTGTCACGG+TGG + chr1_4:59555745-59555764 Msa0174060:intron 30.0%
AAATCATCCAACACACTATG+TGG + chr1_4:59554104-59554123 Msa0174060:intron 35.0%
ATAAGCCTCAAAAGATGAAG+GGG - chr1_4:59554268-59554287 None:intergenic 35.0%
CTTCTTCATCCCTAAATCAT+TGG + chr1_4:59554543-59554562 Msa0174060:intron 35.0%
ACTTTCGGACCAATGATTTA+GGG - chr1_4:59554555-59554574 None:intergenic 35.0%
TACTTTCGGACCAATGATTT+AGG - chr1_4:59554556-59554575 None:intergenic 35.0%
GTTACAAGGTAATATGCGAA+GGG - chr1_4:59554645-59554664 None:intergenic 35.0%
TGTTACAAGGTAATATGCGA+AGG - chr1_4:59554646-59554665 None:intergenic 35.0%
CAGCCAATTATACTGTTACA+AGG - chr1_4:59554659-59554678 None:intergenic 35.0%
GGTCTTAAACAAAGTTCAAG+AGG + chr1_4:59554780-59554799 Msa0174060:CDS 35.0%
TGCTGCTGCAAATAATATGT+AGG - chr1_4:59555220-59555239 None:intergenic 35.0%
! GGTTTTTGTTGAATGGAACA+TGG + chr1_4:59555250-59555269 Msa0174060:CDS 35.0%
AGGAACCTGAAAGAAGAAAA+AGG - chr1_4:59555407-59555426 None:intergenic 35.0%
TAACATTGAAATCTTTGGCC+AGG + chr1_4:59555451-59555470 Msa0174060:CDS 35.0%
! TATTAAGGTGTCAATGTGTG+AGG - chr1_4:59555542-59555561 None:intergenic 35.0%
AAATCATCCAACACACTATG+TGG + chr1_4:59554104-59554123 Msa0174060:intron 35.0%
ATAAGCCTCAAAAGATGAAG+GGG - chr1_4:59554268-59554287 None:intergenic 35.0%
CTTCTTCATCCCTAAATCAT+TGG + chr1_4:59554543-59554562 Msa0174060:intron 35.0%
ACTTTCGGACCAATGATTTA+GGG - chr1_4:59554555-59554574 None:intergenic 35.0%
TACTTTCGGACCAATGATTT+AGG - chr1_4:59554556-59554575 None:intergenic 35.0%
GTTACAAGGTAATATGCGAA+GGG - chr1_4:59554645-59554664 None:intergenic 35.0%
TGTTACAAGGTAATATGCGA+AGG - chr1_4:59554646-59554665 None:intergenic 35.0%
CAGCCAATTATACTGTTACA+AGG - chr1_4:59554659-59554678 None:intergenic 35.0%
GGTCTTAAACAAAGTTCAAG+AGG + chr1_4:59554780-59554799 Msa0174060:CDS 35.0%
TGCTGCTGCAAATAATATGT+AGG - chr1_4:59555220-59555239 None:intergenic 35.0%
! GGTTTTTGTTGAATGGAACA+TGG + chr1_4:59555250-59555269 Msa0174060:CDS 35.0%
AGGAACCTGAAAGAAGAAAA+AGG - chr1_4:59555407-59555426 None:intergenic 35.0%
TAACATTGAAATCTTTGGCC+AGG + chr1_4:59555451-59555470 Msa0174060:CDS 35.0%
! TATTAAGGTGTCAATGTGTG+AGG - chr1_4:59555542-59555561 None:intergenic 35.0%
!!! AATTTGGTGACGTCCTTTTC+AGG - chr1_4:59554016-59554035 None:intergenic 40.0%
GGACAGAGTTAAACATGAAC+AGG + chr1_4:59554125-59554144 Msa0174060:intron 40.0%
!!! TTGGTTTTTGGGACATGATG+AGG - chr1_4:59554171-59554190 None:intergenic 40.0%
AAGGGGAACCAAATGAAAGA+AGG - chr1_4:59554251-59554270 None:intergenic 40.0%
ATGAAGCTGTAACGCTAGTT+TGG - chr1_4:59554353-59554372 None:intergenic 40.0%
AAACTAGCGTTACAGCTTCA+TGG + chr1_4:59554352-59554371 Msa0174060:CDS 40.0%
GAACTCGTTTCGTACAAGTT+CGG + chr1_4:59554450-59554469 Msa0174060:CDS 40.0%
AAGTTCGGAGCAATTGACAT+TGG + chr1_4:59554465-59554484 Msa0174060:CDS 40.0%
TCCATACAAACATCTGGGTA+GGG + chr1_4:59554493-59554512 Msa0174060:intron 40.0%
! TGAATGCACTTTTAGTAGCG+AGG + chr1_4:59554609-59554628 Msa0174060:intron 40.0%
TTCAACTCTACCTTGATGAG+AGG + chr1_4:59554758-59554777 Msa0174060:CDS 40.0%
TCAACTCTACCTTGATGAGA+GGG + chr1_4:59554759-59554778 Msa0174060:CDS 40.0%
! TGTTTAAGACCCTCTCATCA+AGG - chr1_4:59554771-59554790 None:intergenic 40.0%
TGCAGTGAGTACTTACATCA+GGG - chr1_4:59554830-59554849 None:intergenic 40.0%
TTGCAGTGAGTACTTACATC+AGG - chr1_4:59554831-59554850 None:intergenic 40.0%
! AGTGCTGAACTATACAAAGC+CGG + chr1_4:59555174-59555193 Msa0174060:CDS 40.0%
AAACCCAACAATGCATGAGA+GGG - chr1_4:59555286-59555305 None:intergenic 40.0%
!! ATTAAGGGTATCTCAGCTAG+TGG - chr1_4:59555315-59555334 None:intergenic 40.0%
! GTTTGGCTATTGATGGTAAC+TGG + chr1_4:59555374-59555393 Msa0174060:intron 40.0%
CCTGAAAGAAGAAAAAGGAG+AGG - chr1_4:59555402-59555421 None:intergenic 40.0%
! CCTCTCCTTTTTCTTCTTTC+AGG + chr1_4:59555399-59555418 Msa0174060:intron 40.0%
TAGCTTGAGGATAGTACCAA+AGG - chr1_4:59555433-59555452 None:intergenic 40.0%
TAGTTGGAACATGAACTACC+TGG - chr1_4:59555472-59555491 None:intergenic 40.0%
AGTTTATGTCGCTCAAACAG+AGG + chr1_4:59555776-59555795 Msa0174060:CDS 40.0%
!!! AATTTGGTGACGTCCTTTTC+AGG - chr1_4:59554016-59554035 None:intergenic 40.0%
GGACAGAGTTAAACATGAAC+AGG + chr1_4:59554125-59554144 Msa0174060:intron 40.0%
!!! TTGGTTTTTGGGACATGATG+AGG - chr1_4:59554171-59554190 None:intergenic 40.0%
AAGGGGAACCAAATGAAAGA+AGG - chr1_4:59554251-59554270 None:intergenic 40.0%
ATGAAGCTGTAACGCTAGTT+TGG - chr1_4:59554353-59554372 None:intergenic 40.0%
AAACTAGCGTTACAGCTTCA+TGG + chr1_4:59554352-59554371 Msa0174060:CDS 40.0%
GAACTCGTTTCGTACAAGTT+CGG + chr1_4:59554450-59554469 Msa0174060:CDS 40.0%
AAGTTCGGAGCAATTGACAT+TGG + chr1_4:59554465-59554484 Msa0174060:CDS 40.0%
TCCATACAAACATCTGGGTA+GGG + chr1_4:59554493-59554512 Msa0174060:intron 40.0%
! TGAATGCACTTTTAGTAGCG+AGG + chr1_4:59554609-59554628 Msa0174060:intron 40.0%
TTCAACTCTACCTTGATGAG+AGG + chr1_4:59554758-59554777 Msa0174060:CDS 40.0%
TCAACTCTACCTTGATGAGA+GGG + chr1_4:59554759-59554778 Msa0174060:CDS 40.0%
! TGTTTAAGACCCTCTCATCA+AGG - chr1_4:59554771-59554790 None:intergenic 40.0%
TGCAGTGAGTACTTACATCA+GGG - chr1_4:59554830-59554849 None:intergenic 40.0%
TTGCAGTGAGTACTTACATC+AGG - chr1_4:59554831-59554850 None:intergenic 40.0%
! AGTGCTGAACTATACAAAGC+CGG + chr1_4:59555174-59555193 Msa0174060:CDS 40.0%
AAACCCAACAATGCATGAGA+GGG - chr1_4:59555286-59555305 None:intergenic 40.0%
!! ATTAAGGGTATCTCAGCTAG+TGG - chr1_4:59555315-59555334 None:intergenic 40.0%
! GTTTGGCTATTGATGGTAAC+TGG + chr1_4:59555374-59555393 Msa0174060:intron 40.0%
CCTGAAAGAAGAAAAAGGAG+AGG - chr1_4:59555402-59555421 None:intergenic 40.0%
! CCTCTCCTTTTTCTTCTTTC+AGG + chr1_4:59555399-59555418 Msa0174060:intron 40.0%
TAGCTTGAGGATAGTACCAA+AGG - chr1_4:59555433-59555452 None:intergenic 40.0%
TAGTTGGAACATGAACTACC+TGG - chr1_4:59555472-59555491 None:intergenic 40.0%
AGTTTATGTCGCTCAAACAG+AGG + chr1_4:59555776-59555795 Msa0174060:CDS 40.0%
ACTCTGTCCACATAGTGTGT+TGG - chr1_4:59554114-59554133 None:intergenic 45.0%
TAACTCGATGCTCGCACAAA+AGG + chr1_4:59554211-59554230 Msa0174060:intron 45.0%
! TGGTTCCCCTTCATCTTTTG+AGG + chr1_4:59554260-59554279 Msa0174060:intron 45.0%
AACTCCACACAGTACGCAAA+CGG + chr1_4:59554289-59554308 Msa0174060:intron 45.0%
AAGAGTGAAAGTGACACACG+AGG - chr1_4:59554378-59554397 None:intergenic 45.0%
!! CGTGTGTCACTTTCACTCTT+CGG + chr1_4:59554378-59554397 Msa0174060:CDS 45.0%
AAACGAGTTCGACTCTCGAA+TGG - chr1_4:59554440-59554459 None:intergenic 45.0%
CCCAGATGTTTGTATGGAGT+GGG - chr1_4:59554491-59554510 None:intergenic 45.0%
CCCACTCCATACAAACATCT+GGG + chr1_4:59554488-59554507 Msa0174060:CDS 45.0%
ACCCAGATGTTTGTATGGAG+TGG - chr1_4:59554492-59554511 None:intergenic 45.0%
CTCCATACAAACATCTGGGT+AGG + chr1_4:59554492-59554511 Msa0174060:intron 45.0%
ACCCTACCCAGATGTTTGTA+TGG - chr1_4:59554497-59554516 None:intergenic 45.0%
TACAAACATCTGGGTAGGGT+AGG + chr1_4:59554497-59554516 Msa0174060:intron 45.0%
CAAGGTAATATGCGAAGGGT+TGG - chr1_4:59554641-59554660 None:intergenic 45.0%
CAGTAAAACAACCCCAGCAA+GGG - chr1_4:59554724-59554743 None:intergenic 45.0%
AGTGAGTACTTACATCAGGG+AGG - chr1_4:59554827-59554846 None:intergenic 45.0%
TTGTTGAATGGAACATGGCC+AGG + chr1_4:59555255-59555274 Msa0174060:CDS 45.0%
TTCACCCTCTCATGCATTGT+TGG + chr1_4:59555279-59555298 Msa0174060:CDS 45.0%
TCACCCTCTCATGCATTGTT+GGG + chr1_4:59555280-59555299 Msa0174060:CDS 45.0%
CAAACCCAACAATGCATGAG+AGG - chr1_4:59555287-59555306 None:intergenic 45.0%
!! CTTTCAGGTTCCTTCACCTT+TGG + chr1_4:59555414-59555433 Msa0174060:intron 45.0%
GAGGATAGTACCAAAGGTGA+AGG - chr1_4:59555427-59555446 None:intergenic 45.0%
ATGTGTAGGGACTCGTTACT+TGG + chr1_4:59555691-59555710 Msa0174060:intron 45.0%
ACTCTGTCCACATAGTGTGT+TGG - chr1_4:59554114-59554133 None:intergenic 45.0%
TAACTCGATGCTCGCACAAA+AGG + chr1_4:59554211-59554230 Msa0174060:intron 45.0%
! TGGTTCCCCTTCATCTTTTG+AGG + chr1_4:59554260-59554279 Msa0174060:intron 45.0%
AACTCCACACAGTACGCAAA+CGG + chr1_4:59554289-59554308 Msa0174060:intron 45.0%
AAGAGTGAAAGTGACACACG+AGG - chr1_4:59554378-59554397 None:intergenic 45.0%
!! CGTGTGTCACTTTCACTCTT+CGG + chr1_4:59554378-59554397 Msa0174060:CDS 45.0%
AAACGAGTTCGACTCTCGAA+TGG - chr1_4:59554440-59554459 None:intergenic 45.0%
CCCAGATGTTTGTATGGAGT+GGG - chr1_4:59554491-59554510 None:intergenic 45.0%
CCCACTCCATACAAACATCT+GGG + chr1_4:59554488-59554507 Msa0174060:CDS 45.0%
ACCCAGATGTTTGTATGGAG+TGG - chr1_4:59554492-59554511 None:intergenic 45.0%
CTCCATACAAACATCTGGGT+AGG + chr1_4:59554492-59554511 Msa0174060:intron 45.0%
ACCCTACCCAGATGTTTGTA+TGG - chr1_4:59554497-59554516 None:intergenic 45.0%
TACAAACATCTGGGTAGGGT+AGG + chr1_4:59554497-59554516 Msa0174060:intron 45.0%
CAAGGTAATATGCGAAGGGT+TGG - chr1_4:59554641-59554660 None:intergenic 45.0%
CAGTAAAACAACCCCAGCAA+GGG - chr1_4:59554724-59554743 None:intergenic 45.0%
AGTGAGTACTTACATCAGGG+AGG - chr1_4:59554827-59554846 None:intergenic 45.0%
TTGTTGAATGGAACATGGCC+AGG + chr1_4:59555255-59555274 Msa0174060:CDS 45.0%
TTCACCCTCTCATGCATTGT+TGG + chr1_4:59555279-59555298 Msa0174060:CDS 45.0%
TCACCCTCTCATGCATTGTT+GGG + chr1_4:59555280-59555299 Msa0174060:CDS 45.0%
CAAACCCAACAATGCATGAG+AGG - chr1_4:59555287-59555306 None:intergenic 45.0%
!! CTTTCAGGTTCCTTCACCTT+TGG + chr1_4:59555414-59555433 Msa0174060:intron 45.0%
GAGGATAGTACCAAAGGTGA+AGG - chr1_4:59555427-59555446 None:intergenic 45.0%
ATGTGTAGGGACTCGTTACT+TGG + chr1_4:59555691-59555710 Msa0174060:intron 45.0%
CAGTATGAGAACACGAGCAG+TGG - chr1_4:59554076-59554095 None:intergenic 50.0%
ACTCCACACAGTACGCAAAC+GGG + chr1_4:59554290-59554309 Msa0174060:intron 50.0%
TCACTTTCACTCTTCGGCAC+AGG + chr1_4:59554384-59554403 Msa0174060:CDS 50.0%
TTCGGCACAGGATTCGTGTT+TGG + chr1_4:59554396-59554415 Msa0174060:CDS 50.0%
GTGTTTGGTCCACTTCTCGA+TGG + chr1_4:59554411-59554430 Msa0174060:CDS 50.0%
GAATGGAGTCCATCGAGAAG+TGG - chr1_4:59554423-59554442 None:intergenic 50.0%
GCCCACTCCATACAAACATC+TGG + chr1_4:59554487-59554506 Msa0174060:CDS 50.0%
TTGATAGGTTCCTCCCTTGC+TGG + chr1_4:59554708-59554727 Msa0174060:intron 50.0%
TGATAGGTTCCTCCCTTGCT+GGG + chr1_4:59554709-59554728 Msa0174060:intron 50.0%
TAAAACAACCCCAGCAAGGG+AGG - chr1_4:59554721-59554740 None:intergenic 50.0%
GCAGTAAAACAACCCCAGCA+AGG - chr1_4:59554725-59554744 None:intergenic 50.0%
!! GCTGGGGTTGTTTTACTGCT+CGG + chr1_4:59554726-59554745 Msa0174060:CDS 50.0%
!! GGGTTGTTTTACTGCTCGGT+TGG + chr1_4:59554730-59554749 Msa0174060:CDS 50.0%
CTCGACGTTGTCTGCTATTC+CGG - chr1_4:59555196-59555215 None:intergenic 50.0%
TTGCAGCAGCAGAGTTCCTA+TGG + chr1_4:59555229-59555248 Msa0174060:CDS 50.0%
CAGTATGAGAACACGAGCAG+TGG - chr1_4:59554076-59554095 None:intergenic 50.0%
ACTCCACACAGTACGCAAAC+GGG + chr1_4:59554290-59554309 Msa0174060:intron 50.0%
TCACTTTCACTCTTCGGCAC+AGG + chr1_4:59554384-59554403 Msa0174060:CDS 50.0%
TTCGGCACAGGATTCGTGTT+TGG + chr1_4:59554396-59554415 Msa0174060:CDS 50.0%
GTGTTTGGTCCACTTCTCGA+TGG + chr1_4:59554411-59554430 Msa0174060:CDS 50.0%
GAATGGAGTCCATCGAGAAG+TGG - chr1_4:59554423-59554442 None:intergenic 50.0%
GCCCACTCCATACAAACATC+TGG + chr1_4:59554487-59554506 Msa0174060:CDS 50.0%
TTGATAGGTTCCTCCCTTGC+TGG + chr1_4:59554708-59554727 Msa0174060:intron 50.0%
TGATAGGTTCCTCCCTTGCT+GGG + chr1_4:59554709-59554728 Msa0174060:intron 50.0%
TAAAACAACCCCAGCAAGGG+AGG - chr1_4:59554721-59554740 None:intergenic 50.0%
GCAGTAAAACAACCCCAGCA+AGG - chr1_4:59554725-59554744 None:intergenic 50.0%
!! GCTGGGGTTGTTTTACTGCT+CGG + chr1_4:59554726-59554745 Msa0174060:CDS 50.0%
!! GGGTTGTTTTACTGCTCGGT+TGG + chr1_4:59554730-59554749 Msa0174060:CDS 50.0%
CTCGACGTTGTCTGCTATTC+CGG - chr1_4:59555196-59555215 None:intergenic 50.0%
TTGCAGCAGCAGAGTTCCTA+TGG + chr1_4:59555229-59555248 Msa0174060:CDS 50.0%
CTCCACACAGTACGCAAACG+GGG + chr1_4:59554291-59554310 Msa0174060:intron 55.0%
! TGCTGATTGACAGCACGGTG+AGG - chr1_4:59554327-59554346 None:intergenic 55.0%
! GGCTCTGCTGATTGACAGCA+CGG - chr1_4:59554332-59554351 None:intergenic 55.0%
GATAGGTTCCTCCCTTGCTG+GGG + chr1_4:59554710-59554729 Msa0174060:intron 55.0%
CGGAATAGCAGACAACGTCG+AGG + chr1_4:59555194-59555213 Msa0174060:CDS 55.0%
ATGCATGAGAGGGTGAAGCC+TGG - chr1_4:59555276-59555295 None:intergenic 55.0%
CTCCACACAGTACGCAAACG+GGG + chr1_4:59554291-59554310 Msa0174060:intron 55.0%
! TGCTGATTGACAGCACGGTG+AGG - chr1_4:59554327-59554346 None:intergenic 55.0%
! GGCTCTGCTGATTGACAGCA+CGG - chr1_4:59554332-59554351 None:intergenic 55.0%
GATAGGTTCCTCCCTTGCTG+GGG + chr1_4:59554710-59554729 Msa0174060:intron 55.0%
CGGAATAGCAGACAACGTCG+AGG + chr1_4:59555194-59555213 Msa0174060:CDS 55.0%
ATGCATGAGAGGGTGAAGCC+TGG - chr1_4:59555276-59555295 None:intergenic 55.0%
GACCCCGTTTGCGTACTGTG+TGG - chr1_4:59554296-59554315 None:intergenic 60.0%
GACCCCGTTTGCGTACTGTG+TGG - chr1_4:59554296-59554315 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 59553959 59555805 59553959 ID=Msa0174060;Name=Msa0174060
chr1_4 mRNA 59553959 59555805 59553959 ID=Msa0174060-mRNA-1;Parent=Msa0174060;Name=Msa0174060-mRNA-1;_AED=0.28;_eAED=0.32;_QI=0|0.6|0.5|0.83|0.6|0.5|6|0|202
chr1_4 exon 59553959 59553965 59553959 ID=Msa0174060-mRNA-1:exon:18690;Parent=Msa0174060-mRNA-1
chr1_4 exon 59554301 59554509 59554301 ID=Msa0174060-mRNA-1:exon:18691;Parent=Msa0174060-mRNA-1
chr1_4 exon 59554715 59554833 59554715 ID=Msa0174060-mRNA-1:exon:18692;Parent=Msa0174060-mRNA-1
chr1_4 exon 59555149 59555337 59555149 ID=Msa0174060-mRNA-1:exon:18693;Parent=Msa0174060-mRNA-1
chr1_4 exon 59555421 59555472 59555421 ID=Msa0174060-mRNA-1:exon:18694;Parent=Msa0174060-mRNA-1
chr1_4 exon 59555773 59555805 59555773 ID=Msa0174060-mRNA-1:exon:18695;Parent=Msa0174060-mRNA-1
chr1_4 CDS 59553959 59553965 59553959 ID=Msa0174060-mRNA-1:cds;Parent=Msa0174060-mRNA-1
chr1_4 CDS 59554301 59554509 59554301 ID=Msa0174060-mRNA-1:cds;Parent=Msa0174060-mRNA-1
chr1_4 CDS 59554715 59554833 59554715 ID=Msa0174060-mRNA-1:cds;Parent=Msa0174060-mRNA-1
chr1_4 CDS 59555149 59555337 59555149 ID=Msa0174060-mRNA-1:cds;Parent=Msa0174060-mRNA-1
chr1_4 CDS 59555421 59555472 59555421 ID=Msa0174060-mRNA-1:cds;Parent=Msa0174060-mRNA-1
chr1_4 CDS 59555773 59555805 59555773 ID=Msa0174060-mRNA-1:cds;Parent=Msa0174060-mRNA-1
Gene Sequence

>Msa0174060

ATGCAAGTACGCAAACGGGGTCTGCTTAAGCCTCACCGTGCTGTCAATCAGCAGAGCCAAACTAGCGTTACAGCTTCATGGCCTCGTGTGTCACTTTCACTCTTCGGCACAGGATTCGTGTTTGGTCCACTTCTCGATGGACTCCATTCGAGAGTCGAACTCGTTTCGTACAAGTTCGGAGCAATTGACATTGGCCCACTCCATACAAACATCTGGGTTCCTCCCTTGCTGGGGTTGTTTTACTGCTCGGTTGGTTTGCTTCAACTCTACCTTGATGAGAGGGTCTTAAACAAAGTTCAAGAGGGAAGTTTAACAAAAACAATATCCTCCCTGATATTAGTAGCGTTGTTCATAGAGTTGAGTGCTGAACTATACAAAGCCGGAATAGCAGACAACGTCGAGGCCTACATATTATTTGCAGCAGCAGAGTTCCTATGGTTTTTGTTGAATGGAACATGGCCAGGCTTCACCCTCTCATGCATTGTTGGGTTTGCTTGTCCACTAGCTGAGATACCCTTAATGAAGTTCCTTCACCTTTGGTACTATCCTCAAGCTAACATTGAAATCTTTGGCCAGAACAGTTTATGTCGCTCAAACAGAGGAGTCTGA

Protein sequence

>Msa0174060

MQVRKRGLLKPHRAVNQQSQTSVTASWPRVSLSLFGTGFVFGPLLDGLHSRVELVSYKFGAIDIGPLHTNIWVPPLLGLFYCSVGLLQLYLDERVLNKVQEGSLTKTISSLILVALFIELSAELYKAGIADNVEAYILFAAAEFLWFLLNGTWPGFTLSCIVGFACPLAEIPLMKFLHLWYYPQANIEIFGQNSLCRSNRGV*