AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0640110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640110 MtrunA17_Chr4g0023621 97.500 160 4 0 1 160 1 160 1.57e-112 316
Msa0640110 MtrunA17_Chr2g0323081 71.519 158 45 0 1 158 1 158 1.65e-80 235
Msa0640110 MtrunA17_Chr4g0049001 55.696 158 70 0 1 158 1 158 9.91e-68 202
Msa0640110 MtrunA17_Chr2g0280491 55.063 158 71 0 1 158 1 158 2.90e-59 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0640110 AT2G32280.1 63.750 160 58 0 1 160 1 160 1.39e-77 228
Msa0640110 AT2G32280.2 63.750 160 58 0 1 160 1 160 1.39e-77 228
Msa0640110 AT4G21310.1 63.291 158 58 0 1 158 1 158 1.81e-72 215
Msa0640110 AT4G21310.2 60.000 120 48 0 39 158 1 120 1.37e-51 161
Msa0640110 AT1G11500.1 39.375 160 90 1 6 158 6 165 1.43e-33 117
Msa0640110 AT1G11500.3 39.375 160 90 1 6 158 11 170 2.17e-33 117
Msa0640110 AT1G11500.2 42.105 114 66 0 45 158 24 137 2.14e-27 100
Msa0640110 AT1G05291.1 40.000 145 80 3 12 153 23 163 6.62e-24 92.8

Find 61 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAAACACAAATATTTC+TGG 0.152103 4_3:+37709970 None:intergenic
TGCGATTATGGCCCCTGTTT+TGG 0.195648 4_3:-37707821 Msa0640110:three_prime_UTR
TTCTCAACAAGTTGCGATTA+TGG 0.218709 4_3:-37707833 Msa0640110:three_prime_UTR
GATGTTGCAGCTGGTATTCT+TGG 0.255223 4_3:-37709894 Msa0640110:CDS
AATCATATTTCCCTTATGTT+AGG 0.259505 4_3:+37707871 None:intergenic
GTTGGGTGCAGCAGTGCTAT+TGG 0.296588 4_3:-37709652 Msa0640110:CDS
TGATTTACTCATTATTATCT+TGG 0.313721 4_3:-37708001 Msa0640110:three_prime_UTR
TTGGGTGCAGCAGTGCTATT+GGG 0.315421 4_3:-37709651 Msa0640110:CDS
CAATTGTGTTTGTTCTCAAC+AGG 0.330421 4_3:-37709592 Msa0640110:CDS
ATTGCAACCACCTAACAAAT+TGG 0.332978 4_3:+37709611 None:intergenic
AGTCATGATGCCTTCATGTT+GGG 0.345983 4_3:-37709675 Msa0640110:CDS
GGCAAAAGAGACCCATGTTT+AGG 0.350325 4_3:-37707914 Msa0640110:three_prime_UTR
TATATTACCAGGTTAAAATA+AGG 0.351790 4_3:+37709526 None:intergenic
GACGCCACGTGTCCCAAAAC+AGG 0.355530 4_3:+37707808 None:intergenic
GGATTGTCCATGCTGGTGAT+AGG 0.356876 4_3:-37708299 Msa0640110:CDS
CAACATCCATGATAACAATT+AGG 0.363009 4_3:+37709910 None:intergenic
GCAAAAGAGACCCATGTTTA+GGG 0.381325 4_3:-37707913 Msa0640110:three_prime_UTR
ATCATATTTCCCTTATGTTA+GGG 0.383201 4_3:+37707872 None:intergenic
CATTGTTACCACTGCTTCCA+TGG 0.385326 4_3:-37708165 Msa0640110:CDS
CACCATCACTTTCTGTCCAT+TGG 0.397413 4_3:-37708233 Msa0640110:CDS
GATGCCTTCATGTTGGGGTT+GGG 0.408304 4_3:-37709669 Msa0640110:CDS
AAAGTACTGAGAGTTGTCTA+TGG 0.408478 4_3:+37709550 None:intergenic
ATCAGGGTTGTAGTGGCTGT+TGG 0.413714 4_3:-37708320 Msa0640110:intron
AGCTGGTATTCTTGGCTTTG+AGG 0.413890 4_3:-37709886 Msa0640110:CDS
TTGTCTCCTAATTGTTATCA+TGG 0.414420 4_3:-37709916 Msa0640110:CDS
TTGAAAACACAAATATTTCT+GGG 0.422188 4_3:+37709971 None:intergenic
TGATGCCTTCATGTTGGGGT+TGG 0.426974 4_3:-37709670 Msa0640110:CDS
CGCAACTTGTTGAGAAGATA+AGG 0.431968 4_3:+37707840 None:intergenic
GATTGTCCATGCTGGTGATA+GGG 0.456865 4_3:-37708298 Msa0640110:CDS
AAAACAGGTTAAGCATTTGA+AGG 0.491275 4_3:-37709724 Msa0640110:intron
CATCACTTTCTGTCCATTGG+TGG 0.495015 4_3:-37708230 Msa0640110:CDS
TACAATATGGCTAGAGTAGG+AGG 0.513670 4_3:-37709948 Msa0640110:exon
TAGGGGCTATGTCAAACAAC+AGG 0.531371 4_3:-37708280 Msa0640110:CDS
AACATGAAGGCATCATGACT+TGG 0.534290 4_3:+37709678 None:intergenic
GTCATGATGCCTTCATGTTG+GGG 0.535583 4_3:-37709674 Msa0640110:CDS
GGCTGTTGGATTGTCCATGC+TGG 0.538448 4_3:-37708306 Msa0640110:CDS
TTCTCAACAGGAATTTGAGA+AGG 0.542952 4_3:-37709580 Msa0640110:CDS
CATATTTCCCTTATGTTAGG+GGG 0.545265 4_3:+37707874 None:intergenic
AAAACATGAAATTCCACCAA+TGG 0.549360 4_3:+37708217 None:intergenic
TCTTACAAAATACTAATCCA+TGG 0.550482 4_3:+37708148 None:intergenic
AGAGCATATTTCCCTAAACA+TGG 0.551374 4_3:+37707902 None:intergenic
CAATACAATATGGCTAGAGT+AGG 0.551922 4_3:-37709951 Msa0640110:exon
AGGTTAAGCATTTGAAGGTG+TGG 0.557434 4_3:-37709719 Msa0640110:CDS
GTTGTTGATCAGGGTTGTAG+TGG 0.569996 4_3:-37708327 Msa0640110:intron
AAGTCATGATGCCTTCATGT+TGG 0.571287 4_3:-37709676 Msa0640110:CDS
GTTATCATGGATGTTGCAGC+TGG 0.584347 4_3:-37709903 Msa0640110:CDS
AAGTACTGAGAGTTGTCTAT+GGG 0.588754 4_3:+37709551 None:intergenic
ATACTAATCCATGGAAGCAG+TGG 0.591196 4_3:+37708157 None:intergenic
ATTGTCCATGCTGGTGATAG+GGG 0.591559 4_3:-37708297 Msa0640110:CDS
TATGTCAAACAACAGGTCAA+AGG 0.592422 4_3:-37708273 Msa0640110:CDS
ACGCCACGTGTCCCAAAACA+GGG 0.593408 4_3:+37707809 None:intergenic
TCATATTTCCCTTATGTTAG+GGG 0.602228 4_3:+37707873 None:intergenic
TGCACCCAACCCCAACATGA+AGG 0.603813 4_3:+37709665 None:intergenic
TACTGAGAGTTGTCTATGGG+AGG 0.604411 4_3:+37709554 None:intergenic
AACAGGTCAAAGGATTCTTG+TGG 0.609881 4_3:-37708263 Msa0640110:CDS
GGCTGAAATAGCACAAAACA+AGG 0.619758 4_3:-37709865 Msa0640110:intron
AGTTCTAAGATTAGAAACAG+TGG 0.646953 4_3:+37710032 None:intergenic
CATAGCCCCTATCACCAGCA+TGG 0.647824 4_3:+37708292 None:intergenic
GAGCATATTTCCCTAAACAT+GGG 0.648214 4_3:+37707903 None:intergenic
CACCAATGGACAGAAAGTGA+TGG 0.662217 4_3:+37708231 None:intergenic
CGCCACGTGTCCCAAAACAG+GGG 0.699563 4_3:+37707810 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAAATAATTAATAACA+AGG - chr4_3:37708059-37708078 Msa0640110:three_prime_UTR 10.0%
!!! AAATAGTACTTTTTTTAATT+GGG - chr4_3:37709371-37709390 Msa0640110:intron 10.0%
!!! TTTTGAAATAATTAATAACA+AGG - chr4_3:37708059-37708078 Msa0640110:three_prime_UTR 10.0%
!!! AAATAGTACTTTTTTTAATT+GGG - chr4_3:37709371-37709390 Msa0640110:intron 10.0%
!! TAAAATATATTCCAAAATGT+TGG + chr4_3:37708022-37708041 None:intergenic 15.0%
!!! TTTTTTATTTTCAACAAAAC+AGG - chr4_3:37708107-37708126 Msa0640110:three_prime_UTR 15.0%
!!! TCCAAATAAAATATTTTACA+GGG + chr4_3:37708467-37708486 None:intergenic 15.0%
!!! ATCCAAATAAAATATTTTAC+AGG + chr4_3:37708468-37708487 None:intergenic 15.0%
!! AAAATTAACTCAAATTAACA+GGG + chr4_3:37708608-37708627 None:intergenic 15.0%
!! GCAATTAAGTAAAAAAAAAA+AGG + chr4_3:37708786-37708805 None:intergenic 15.0%
!! AAAATGTTTGAATATCTAAT+CGG - chr4_3:37708974-37708993 Msa0640110:intron 15.0%
!!! CAAATAGTACTTTTTTTAAT+TGG - chr4_3:37709370-37709389 Msa0640110:intron 15.0%
!!! AATAGTACTTTTTTTAATTG+GGG - chr4_3:37709372-37709391 Msa0640110:intron 15.0%
!! ATATTTAGTGAATGATTATT+TGG + chr4_3:37709479-37709498 None:intergenic 15.0%
!! TAAAATATATTCCAAAATGT+TGG + chr4_3:37708022-37708041 None:intergenic 15.0%
!!! TTTTTTATTTTCAACAAAAC+AGG - chr4_3:37708107-37708126 Msa0640110:three_prime_UTR 15.0%
!!! TCCAAATAAAATATTTTACA+GGG + chr4_3:37708467-37708486 None:intergenic 15.0%
!!! ATCCAAATAAAATATTTTAC+AGG + chr4_3:37708468-37708487 None:intergenic 15.0%
!! AAAATTAACTCAAATTAACA+GGG + chr4_3:37708608-37708627 None:intergenic 15.0%
!! GCAATTAAGTAAAAAAAAAA+AGG + chr4_3:37708786-37708805 None:intergenic 15.0%
!! AAAATGTTTGAATATCTAAT+CGG - chr4_3:37708974-37708993 Msa0640110:intron 15.0%
!!! CAAATAGTACTTTTTTTAAT+TGG - chr4_3:37709370-37709389 Msa0640110:intron 15.0%
!!! AATAGTACTTTTTTTAATTG+GGG - chr4_3:37709372-37709391 Msa0640110:intron 15.0%
!! ATATTTAGTGAATGATTATT+TGG + chr4_3:37709479-37709498 None:intergenic 15.0%
!! TTGAAAACACAAATATTTCT+GGG + chr4_3:37707878-37707897 None:intergenic 20.0%
!! ATTGAAAACACAAATATTTC+TGG + chr4_3:37707879-37707898 None:intergenic 20.0%
!!! TTTGTGTTTTCAATACAATA+TGG - chr4_3:37707885-37707904 Msa0640110:three_prime_UTR 20.0%
!! TATATTACCAGGTTAAAATA+AGG + chr4_3:37708323-37708342 None:intergenic 20.0%
!!! CCAAATAAAATATTTTACAG+GGG + chr4_3:37708466-37708485 None:intergenic 20.0%
!! CAAATAATCTTCAAATTACA+AGG + chr4_3:37708496-37708515 None:intergenic 20.0%
!! CTTGTAATTTGAAGATTATT+TGG - chr4_3:37708494-37708513 Msa0640110:intron 20.0%
!! AAATTAACTCAAATTAACAG+GGG + chr4_3:37708607-37708626 None:intergenic 20.0%
!! CAAAATTAACTCAAATTAAC+AGG + chr4_3:37708609-37708628 None:intergenic 20.0%
!!! CTGTTAATTTGAGTTAATTT+TGG - chr4_3:37708607-37708626 Msa0640110:intron 20.0%
!!! AATTTGAAGTTTTTTGGTTT+TGG + chr4_3:37708682-37708701 None:intergenic 20.0%
!!! ATCCAAAAAGAAAATTTTAC+AGG - chr4_3:37708713-37708732 Msa0640110:intron 20.0%
!!! TCCAAAAAGAAAATTTTACA+GGG - chr4_3:37708714-37708733 Msa0640110:intron 20.0%
!! AAATGTTTGAATATCTAATC+GGG - chr4_3:37708975-37708994 Msa0640110:intron 20.0%
!!! ATTTTAAAGAAAAGTGAAAG+TGG - chr4_3:37709058-37709077 Msa0640110:intron 20.0%
!! TATTGGATCAAAATACATTT+AGG + chr4_3:37709419-37709438 None:intergenic 20.0%
!! TATCAGTTACATTTAGTTAT+TGG + chr4_3:37709436-37709455 None:intergenic 20.0%
!! TGATTTACTCATTATTATCT+TGG - chr4_3:37709845-37709864 Msa0640110:intron 20.0%
!!! CTTTTGCCTTTTTTTAATAA+GGG + chr4_3:37709920-37709939 None:intergenic 20.0%
!!! TCTTTTGCCTTTTTTTAATA+AGG + chr4_3:37709921-37709940 None:intergenic 20.0%
!! TTGAAAACACAAATATTTCT+GGG + chr4_3:37707878-37707897 None:intergenic 20.0%
!! ATTGAAAACACAAATATTTC+TGG + chr4_3:37707879-37707898 None:intergenic 20.0%
!!! TTTGTGTTTTCAATACAATA+TGG - chr4_3:37707885-37707904 Msa0640110:three_prime_UTR 20.0%
!! TATATTACCAGGTTAAAATA+AGG + chr4_3:37708323-37708342 None:intergenic 20.0%
!!! CCAAATAAAATATTTTACAG+GGG + chr4_3:37708466-37708485 None:intergenic 20.0%
!! CAAATAATCTTCAAATTACA+AGG + chr4_3:37708496-37708515 None:intergenic 20.0%
!! CTTGTAATTTGAAGATTATT+TGG - chr4_3:37708494-37708513 Msa0640110:intron 20.0%
!! AAATTAACTCAAATTAACAG+GGG + chr4_3:37708607-37708626 None:intergenic 20.0%
!! CAAAATTAACTCAAATTAAC+AGG + chr4_3:37708609-37708628 None:intergenic 20.0%
!!! CTGTTAATTTGAGTTAATTT+TGG - chr4_3:37708607-37708626 Msa0640110:intron 20.0%
!!! AATTTGAAGTTTTTTGGTTT+TGG + chr4_3:37708682-37708701 None:intergenic 20.0%
!!! ATCCAAAAAGAAAATTTTAC+AGG - chr4_3:37708713-37708732 Msa0640110:intron 20.0%
!!! TCCAAAAAGAAAATTTTACA+GGG - chr4_3:37708714-37708733 Msa0640110:intron 20.0%
!! AAATGTTTGAATATCTAATC+GGG - chr4_3:37708975-37708994 Msa0640110:intron 20.0%
!!! ATTTTAAAGAAAAGTGAAAG+TGG - chr4_3:37709058-37709077 Msa0640110:intron 20.0%
!! TATTGGATCAAAATACATTT+AGG + chr4_3:37709419-37709438 None:intergenic 20.0%
!! TATCAGTTACATTTAGTTAT+TGG + chr4_3:37709436-37709455 None:intergenic 20.0%
!! TGATTTACTCATTATTATCT+TGG - chr4_3:37709845-37709864 Msa0640110:intron 20.0%
!!! CTTTTGCCTTTTTTTAATAA+GGG + chr4_3:37709920-37709939 None:intergenic 20.0%
!!! TCTTTTGCCTTTTTTTAATA+AGG + chr4_3:37709921-37709940 None:intergenic 20.0%
!!! TAGTTTTGTTATTCCAAAAC+AGG + chr4_3:37708362-37708381 None:intergenic 25.0%
! TTGGAATAACAAAACTAGTT+AGG - chr4_3:37708365-37708384 Msa0640110:intron 25.0%
!! CCCCTGTAAAATATTTTATT+TGG - chr4_3:37708463-37708482 Msa0640110:intron 25.0%
! GAAATTTCCTAAAATTACAG+GGG + chr4_3:37708546-37708565 None:intergenic 25.0%
! CGAAATTTCCTAAAATTACA+GGG + chr4_3:37708547-37708566 None:intergenic 25.0%
!!! CCTGTAATTTTAGGAAATTT+CGG - chr4_3:37708545-37708564 Msa0640110:intron 25.0%
! AATTAACTCAAATTAACAGG+GGG + chr4_3:37708606-37708625 None:intergenic 25.0%
! TGTAGAGTCAAAATTTATGA+AGG - chr4_3:37708655-37708674 Msa0640110:intron 25.0%
!!! CCTTGTAATTTGAAGTTTTT+TGG + chr4_3:37708688-37708707 None:intergenic 25.0%
! CCAAAAAACTTCAAATTACA+AGG - chr4_3:37708685-37708704 Msa0640110:intron 25.0%
! AAAACTTCAAATTACAAGGA+CGG - chr4_3:37708689-37708708 Msa0640110:intron 25.0%
!! CCAAAAAGAAAATTTTACAG+GGG - chr4_3:37708715-37708734 Msa0640110:intron 25.0%
!! CAAAAAGAAAATTTTACAGG+GGG - chr4_3:37708716-37708735 Msa0640110:intron 25.0%
! TTGTATCATTGTGATACTTA+TGG + chr4_3:37708817-37708836 None:intergenic 25.0%
! GTATCACAATGATACAATTT+AGG - chr4_3:37708820-37708839 Msa0640110:intron 25.0%
! ACGTAAATTTGGAGAAAATT+GGG + chr4_3:37708870-37708889 None:intergenic 25.0%
! AACGTAAATTTGGAGAAAAT+TGG + chr4_3:37708871-37708890 None:intergenic 25.0%
! AATGTTTGAATATCTAATCG+GGG - chr4_3:37708976-37708995 Msa0640110:intron 25.0%
!! TTAAGGTCAAAAGTACAATT+AGG - chr4_3:37709163-37709182 Msa0640110:intron 25.0%
!!! ACAATTAGGCCATTTTAATT+CGG - chr4_3:37709177-37709196 Msa0640110:intron 25.0%
!!! CTATGTACCATAGTTTTATT+CGG - chr4_3:37709308-37709327 Msa0640110:intron 25.0%
! TCTTACAAAATACTAATCCA+TGG + chr4_3:37709701-37709720 None:intergenic 25.0%
!! CTTTTGTAATAATTGTGCTA+AGG - chr4_3:37709811-37709830 Msa0640110:intron 25.0%
!!! GCAACATTTTAAAACTTATG+GGG + chr4_3:37709888-37709907 None:intergenic 25.0%
!!! CGCAACATTTTAAAACTTAT+GGG + chr4_3:37709889-37709908 None:intergenic 25.0%
!!! TCGCAACATTTTAAAACTTA+TGG + chr4_3:37709890-37709909 None:intergenic 25.0%
!!! GTTTTAAAATGTTGCGATTT+TGG - chr4_3:37709893-37709912 Msa0640110:CDS 25.0%
! TTTGGTCCCTTATTAAAAAA+AGG - chr4_3:37709911-37709930 Msa0640110:CDS 25.0%
! ATCATATTTCCCTTATGTTA+GGG + chr4_3:37709977-37709996 None:intergenic 25.0%
! AATCATATTTCCCTTATGTT+AGG + chr4_3:37709978-37709997 None:intergenic 25.0%
!!! TAGTTTTGTTATTCCAAAAC+AGG + chr4_3:37708362-37708381 None:intergenic 25.0%
! TTGGAATAACAAAACTAGTT+AGG - chr4_3:37708365-37708384 Msa0640110:intron 25.0%
!! CCCCTGTAAAATATTTTATT+TGG - chr4_3:37708463-37708482 Msa0640110:intron 25.0%
! GAAATTTCCTAAAATTACAG+GGG + chr4_3:37708546-37708565 None:intergenic 25.0%
! CGAAATTTCCTAAAATTACA+GGG + chr4_3:37708547-37708566 None:intergenic 25.0%
!!! CCTGTAATTTTAGGAAATTT+CGG - chr4_3:37708545-37708564 Msa0640110:intron 25.0%
! AATTAACTCAAATTAACAGG+GGG + chr4_3:37708606-37708625 None:intergenic 25.0%
! TGTAGAGTCAAAATTTATGA+AGG - chr4_3:37708655-37708674 Msa0640110:intron 25.0%
!!! CCTTGTAATTTGAAGTTTTT+TGG + chr4_3:37708688-37708707 None:intergenic 25.0%
! CCAAAAAACTTCAAATTACA+AGG - chr4_3:37708685-37708704 Msa0640110:intron 25.0%
! AAAACTTCAAATTACAAGGA+CGG - chr4_3:37708689-37708708 Msa0640110:intron 25.0%
!! CCAAAAAGAAAATTTTACAG+GGG - chr4_3:37708715-37708734 Msa0640110:intron 25.0%
!! CAAAAAGAAAATTTTACAGG+GGG - chr4_3:37708716-37708735 Msa0640110:intron 25.0%
! TTGTATCATTGTGATACTTA+TGG + chr4_3:37708817-37708836 None:intergenic 25.0%
! GTATCACAATGATACAATTT+AGG - chr4_3:37708820-37708839 Msa0640110:intron 25.0%
! ACGTAAATTTGGAGAAAATT+GGG + chr4_3:37708870-37708889 None:intergenic 25.0%
! AACGTAAATTTGGAGAAAAT+TGG + chr4_3:37708871-37708890 None:intergenic 25.0%
! AATGTTTGAATATCTAATCG+GGG - chr4_3:37708976-37708995 Msa0640110:intron 25.0%
!! TTAAGGTCAAAAGTACAATT+AGG - chr4_3:37709163-37709182 Msa0640110:intron 25.0%
!!! ACAATTAGGCCATTTTAATT+CGG - chr4_3:37709177-37709196 Msa0640110:intron 25.0%
!!! CTATGTACCATAGTTTTATT+CGG - chr4_3:37709308-37709327 Msa0640110:intron 25.0%
! TCTTACAAAATACTAATCCA+TGG + chr4_3:37709701-37709720 None:intergenic 25.0%
!! CTTTTGTAATAATTGTGCTA+AGG - chr4_3:37709811-37709830 Msa0640110:intron 25.0%
!!! GCAACATTTTAAAACTTATG+GGG + chr4_3:37709888-37709907 None:intergenic 25.0%
!!! CGCAACATTTTAAAACTTAT+GGG + chr4_3:37709889-37709908 None:intergenic 25.0%
!!! TCGCAACATTTTAAAACTTA+TGG + chr4_3:37709890-37709909 None:intergenic 25.0%
!!! GTTTTAAAATGTTGCGATTT+TGG - chr4_3:37709893-37709912 Msa0640110:CDS 25.0%
! TTTGGTCCCTTATTAAAAAA+AGG - chr4_3:37709911-37709930 Msa0640110:CDS 25.0%
! ATCATATTTCCCTTATGTTA+GGG + chr4_3:37709977-37709996 None:intergenic 25.0%
! AATCATATTTCCCTTATGTT+AGG + chr4_3:37709978-37709997 None:intergenic 25.0%
!! AGTTCTAAGATTAGAAACAG+TGG + chr4_3:37707817-37707836 None:intergenic 30.0%
TTGTCTCCTAATTGTTATCA+TGG - chr4_3:37707930-37707949 Msa0640110:three_prime_UTR 30.0%
CAACATCCATGATAACAATT+AGG + chr4_3:37707939-37707958 None:intergenic 30.0%
! TATGCTTGAATCCAACATTT+TGG - chr4_3:37708008-37708027 Msa0640110:three_prime_UTR 30.0%
AAAACAGGTTAAGCATTTGA+AGG - chr4_3:37708122-37708141 Msa0640110:three_prime_UTR 30.0%
!!! CATGTTTTAGCCAATTTGTT+AGG - chr4_3:37708225-37708244 Msa0640110:CDS 30.0%
!!! TACTTTGCCTTATTTTAACC+TGG - chr4_3:37708313-37708332 Msa0640110:CDS 30.0%
! ATATTTTACAGGGGAAAAAC+CGG + chr4_3:37708457-37708476 None:intergenic 30.0%
! ATTTTGTCCCCTGTAATTTT+AGG - chr4_3:37708536-37708555 Msa0640110:intron 30.0%
CCGAAATTTCCTAAAATTAC+AGG + chr4_3:37708548-37708567 None:intergenic 30.0%
ACTCTACAAAATCGATGATA+TGG + chr4_3:37708643-37708662 None:intergenic 30.0%
! CCCCTGTAAAATTTTCTTTT+TGG + chr4_3:37708718-37708737 None:intergenic 30.0%
TGGAAATGACGTATATTACA+GGG - chr4_3:37708744-37708763 Msa0640110:intron 30.0%
AATTTGGAGAAAATTGGGAT+GGG + chr4_3:37708865-37708884 None:intergenic 30.0%
AAATTTGGAGAAAATTGGGA+TGG + chr4_3:37708866-37708885 None:intergenic 30.0%
ATGTCATCTCAACGTAAATT+TGG + chr4_3:37708881-37708900 None:intergenic 30.0%
GTATTAAAGAATAGCCACAT+TGG + chr4_3:37708935-37708954 None:intergenic 30.0%
! TGTCACTTCAGTGAAAAATT+TGG - chr4_3:37709113-37709132 Msa0640110:intron 30.0%
TTGCACAATCATGATACTTA+AGG - chr4_3:37709146-37709165 Msa0640110:intron 30.0%
!!! CAATTAGGCCATTTTAATTC+GGG - chr4_3:37709178-37709197 Msa0640110:intron 30.0%
!!! ACCATAGTTTTATTCGGAAA+CGG - chr4_3:37709314-37709333 Msa0640110:intron 30.0%
GATCAACAACACAATCAAAA+GGG + chr4_3:37709509-37709528 None:intergenic 30.0%
TGATCAACAACACAATCAAA+AGG + chr4_3:37709510-37709529 None:intergenic 30.0%
!! TTTTGATTGTGTTGTTGATC+AGG - chr4_3:37709509-37709528 Msa0640110:intron 30.0%
! TTTGATTGTGTTGTTGATCA+GGG - chr4_3:37709510-37709529 Msa0640110:intron 30.0%
AAAACATGAAATTCCACCAA+TGG + chr4_3:37709632-37709651 None:intergenic 30.0%
!! GGAATTTCATGTTTTGTTCA+TGG - chr4_3:37709637-37709656 Msa0640110:CDS 30.0%
!!! GTTCATGTTTTTAGTGCTTT+TGG - chr4_3:37709743-37709762 Msa0640110:intron 30.0%
TCATATTTCCCTTATGTTAG+GGG + chr4_3:37709976-37709995 None:intergenic 30.0%
!! AGTTCTAAGATTAGAAACAG+TGG + chr4_3:37707817-37707836 None:intergenic 30.0%
TTGTCTCCTAATTGTTATCA+TGG - chr4_3:37707930-37707949 Msa0640110:three_prime_UTR 30.0%
CAACATCCATGATAACAATT+AGG + chr4_3:37707939-37707958 None:intergenic 30.0%
! TATGCTTGAATCCAACATTT+TGG - chr4_3:37708008-37708027 Msa0640110:three_prime_UTR 30.0%
AAAACAGGTTAAGCATTTGA+AGG - chr4_3:37708122-37708141 Msa0640110:three_prime_UTR 30.0%
!!! CATGTTTTAGCCAATTTGTT+AGG - chr4_3:37708225-37708244 Msa0640110:CDS 30.0%
!!! TACTTTGCCTTATTTTAACC+TGG - chr4_3:37708313-37708332 Msa0640110:CDS 30.0%
! ATATTTTACAGGGGAAAAAC+CGG + chr4_3:37708457-37708476 None:intergenic 30.0%
! ATTTTGTCCCCTGTAATTTT+AGG - chr4_3:37708536-37708555 Msa0640110:intron 30.0%
CCGAAATTTCCTAAAATTAC+AGG + chr4_3:37708548-37708567 None:intergenic 30.0%
ACTCTACAAAATCGATGATA+TGG + chr4_3:37708643-37708662 None:intergenic 30.0%
! CCCCTGTAAAATTTTCTTTT+TGG + chr4_3:37708718-37708737 None:intergenic 30.0%
TGGAAATGACGTATATTACA+GGG - chr4_3:37708744-37708763 Msa0640110:intron 30.0%
AATTTGGAGAAAATTGGGAT+GGG + chr4_3:37708865-37708884 None:intergenic 30.0%
AAATTTGGAGAAAATTGGGA+TGG + chr4_3:37708866-37708885 None:intergenic 30.0%
ATGTCATCTCAACGTAAATT+TGG + chr4_3:37708881-37708900 None:intergenic 30.0%
GTATTAAAGAATAGCCACAT+TGG + chr4_3:37708935-37708954 None:intergenic 30.0%
! TGTCACTTCAGTGAAAAATT+TGG - chr4_3:37709113-37709132 Msa0640110:intron 30.0%
TTGCACAATCATGATACTTA+AGG - chr4_3:37709146-37709165 Msa0640110:intron 30.0%
!!! CAATTAGGCCATTTTAATTC+GGG - chr4_3:37709178-37709197 Msa0640110:intron 30.0%
!!! ACCATAGTTTTATTCGGAAA+CGG - chr4_3:37709314-37709333 Msa0640110:intron 30.0%
GATCAACAACACAATCAAAA+GGG + chr4_3:37709509-37709528 None:intergenic 30.0%
TGATCAACAACACAATCAAA+AGG + chr4_3:37709510-37709529 None:intergenic 30.0%
!! TTTTGATTGTGTTGTTGATC+AGG - chr4_3:37709509-37709528 Msa0640110:intron 30.0%
! TTTGATTGTGTTGTTGATCA+GGG - chr4_3:37709510-37709529 Msa0640110:intron 30.0%
AAAACATGAAATTCCACCAA+TGG + chr4_3:37709632-37709651 None:intergenic 30.0%
!! GGAATTTCATGTTTTGTTCA+TGG - chr4_3:37709637-37709656 Msa0640110:CDS 30.0%
!!! GTTCATGTTTTTAGTGCTTT+TGG - chr4_3:37709743-37709762 Msa0640110:intron 30.0%
TCATATTTCCCTTATGTTAG+GGG + chr4_3:37709976-37709995 None:intergenic 30.0%
! GATTTTCTTTCTGTTCTAGC+TGG + chr4_3:37707856-37707875 None:intergenic 35.0%
CAATACAATATGGCTAGAGT+AGG - chr4_3:37707895-37707914 Msa0640110:three_prime_UTR 35.0%
!!! GTTTTAGCCAATTTGTTAGG+TGG - chr4_3:37708228-37708247 Msa0640110:CDS 35.0%
ATTGCAACCACCTAACAAAT+TGG + chr4_3:37708238-37708257 None:intergenic 35.0%
CAATTGTGTTTGTTCTCAAC+AGG - chr4_3:37708254-37708273 Msa0640110:CDS 35.0%
TTCTCAACAGGAATTTGAGA+AGG - chr4_3:37708266-37708285 Msa0640110:CDS 35.0%
!! AAGTACTGAGAGTTGTCTAT+GGG + chr4_3:37708298-37708317 None:intergenic 35.0%
!! AAAGTACTGAGAGTTGTCTA+TGG + chr4_3:37708299-37708318 None:intergenic 35.0%
! TTGTTATTCCAAAACAGGAC+AGG + chr4_3:37708357-37708376 None:intergenic 35.0%
!!! GTGTTTTAGCCCTGTAATAA+AGG - chr4_3:37708425-37708444 Msa0640110:intron 35.0%
CGGAAATGACCTTTATTACA+GGG + chr4_3:37708437-37708456 None:intergenic 35.0%
CCTGTAATAAAGGTCATTTC+CGG - chr4_3:37708435-37708454 Msa0640110:intron 35.0%
! GGGGACAAAATTTTTCATGA+AGG + chr4_3:37708527-37708546 None:intergenic 35.0%
! CGAAATTTGCTCAAATTGCA+GGG + chr4_3:37708578-37708597 None:intergenic 35.0%
CCTGCAATTTGAGCAAATTT+CGG - chr4_3:37708576-37708595 Msa0640110:intron 35.0%
ACAAAATCGATGATATGGCA+GGG + chr4_3:37708638-37708657 None:intergenic 35.0%
TACAAAATCGATGATATGGC+AGG + chr4_3:37708639-37708658 None:intergenic 35.0%
! AAATTTTACAGGGGGAAAAC+TGG - chr4_3:37708724-37708743 Msa0640110:intron 35.0%
CTGGAAATGACGTATATTAC+AGG - chr4_3:37708743-37708762 Msa0640110:intron 35.0%
GGAAATGACGTATATTACAG+GGG - chr4_3:37708745-37708764 Msa0640110:intron 35.0%
ATTTGGAGAAAATTGGGATG+GGG + chr4_3:37708864-37708883 None:intergenic 35.0%
CACTTCAGTGAAAAATTTGG+AGG - chr4_3:37709116-37709135 Msa0640110:intron 35.0%
TCGATTCACCCGAATTAAAA+TGG + chr4_3:37709189-37709208 None:intergenic 35.0%
TCCGTTTCCGAATAAAACTA+TGG + chr4_3:37709318-37709337 None:intergenic 35.0%
TATGTCAAACAACAGGTCAA+AGG - chr4_3:37709573-37709592 Msa0640110:CDS 35.0%
GAGCATATTTCCCTAAACAT+GGG + chr4_3:37709946-37709965 None:intergenic 35.0%
AGAGCATATTTCCCTAAACA+TGG + chr4_3:37709947-37709966 None:intergenic 35.0%
CATATTTCCCTTATGTTAGG+GGG + chr4_3:37709975-37709994 None:intergenic 35.0%
TTCTCAACAAGTTGCGATTA+TGG - chr4_3:37710013-37710032 Msa0640110:five_prime_UTR 35.0%
! GATTTTCTTTCTGTTCTAGC+TGG + chr4_3:37707856-37707875 None:intergenic 35.0%
CAATACAATATGGCTAGAGT+AGG - chr4_3:37707895-37707914 Msa0640110:three_prime_UTR 35.0%
!!! GTTTTAGCCAATTTGTTAGG+TGG - chr4_3:37708228-37708247 Msa0640110:CDS 35.0%
ATTGCAACCACCTAACAAAT+TGG + chr4_3:37708238-37708257 None:intergenic 35.0%
CAATTGTGTTTGTTCTCAAC+AGG - chr4_3:37708254-37708273 Msa0640110:CDS 35.0%
TTCTCAACAGGAATTTGAGA+AGG - chr4_3:37708266-37708285 Msa0640110:CDS 35.0%
!! AAGTACTGAGAGTTGTCTAT+GGG + chr4_3:37708298-37708317 None:intergenic 35.0%
!! AAAGTACTGAGAGTTGTCTA+TGG + chr4_3:37708299-37708318 None:intergenic 35.0%
! TTGTTATTCCAAAACAGGAC+AGG + chr4_3:37708357-37708376 None:intergenic 35.0%
!!! GTGTTTTAGCCCTGTAATAA+AGG - chr4_3:37708425-37708444 Msa0640110:intron 35.0%
CGGAAATGACCTTTATTACA+GGG + chr4_3:37708437-37708456 None:intergenic 35.0%
CCTGTAATAAAGGTCATTTC+CGG - chr4_3:37708435-37708454 Msa0640110:intron 35.0%
! GGGGACAAAATTTTTCATGA+AGG + chr4_3:37708527-37708546 None:intergenic 35.0%
! CGAAATTTGCTCAAATTGCA+GGG + chr4_3:37708578-37708597 None:intergenic 35.0%
CCTGCAATTTGAGCAAATTT+CGG - chr4_3:37708576-37708595 Msa0640110:intron 35.0%
ACAAAATCGATGATATGGCA+GGG + chr4_3:37708638-37708657 None:intergenic 35.0%
TACAAAATCGATGATATGGC+AGG + chr4_3:37708639-37708658 None:intergenic 35.0%
! AAATTTTACAGGGGGAAAAC+TGG - chr4_3:37708724-37708743 Msa0640110:intron 35.0%
CTGGAAATGACGTATATTAC+AGG - chr4_3:37708743-37708762 Msa0640110:intron 35.0%
GGAAATGACGTATATTACAG+GGG - chr4_3:37708745-37708764 Msa0640110:intron 35.0%
ATTTGGAGAAAATTGGGATG+GGG + chr4_3:37708864-37708883 None:intergenic 35.0%
CACTTCAGTGAAAAATTTGG+AGG - chr4_3:37709116-37709135 Msa0640110:intron 35.0%
TCGATTCACCCGAATTAAAA+TGG + chr4_3:37709189-37709208 None:intergenic 35.0%
TCCGTTTCCGAATAAAACTA+TGG + chr4_3:37709318-37709337 None:intergenic 35.0%
TATGTCAAACAACAGGTCAA+AGG - chr4_3:37709573-37709592 Msa0640110:CDS 35.0%
GAGCATATTTCCCTAAACAT+GGG + chr4_3:37709946-37709965 None:intergenic 35.0%
AGAGCATATTTCCCTAAACA+TGG + chr4_3:37709947-37709966 None:intergenic 35.0%
CATATTTCCCTTATGTTAGG+GGG + chr4_3:37709975-37709994 None:intergenic 35.0%
TTCTCAACAAGTTGCGATTA+TGG - chr4_3:37710013-37710032 Msa0640110:five_prime_UTR 35.0%
TACAATATGGCTAGAGTAGG+AGG - chr4_3:37707898-37707917 Msa0640110:three_prime_UTR 40.0%
GGCTGAAATAGCACAAAACA+AGG - chr4_3:37707981-37708000 Msa0640110:three_prime_UTR 40.0%
AGGTTAAGCATTTGAAGGTG+TGG - chr4_3:37708127-37708146 Msa0640110:three_prime_UTR 40.0%
!! AACATGAAGGCATCATGACT+TGG + chr4_3:37708171-37708190 None:intergenic 40.0%
AAGTCATGATGCCTTCATGT+TGG - chr4_3:37708170-37708189 Msa0640110:CDS 40.0%
AGTCATGATGCCTTCATGTT+GGG - chr4_3:37708171-37708190 Msa0640110:CDS 40.0%
AGAGGCAGAGATATATTACC+AGG + chr4_3:37708334-37708353 None:intergenic 40.0%
CCGGAAATGACCTTTATTAC+AGG + chr4_3:37708438-37708457 None:intergenic 40.0%
! AATTTGCTCAAATTGCAGGG+AGG + chr4_3:37708575-37708594 None:intergenic 40.0%
! CCGAAATTTGCTCAAATTGC+AGG + chr4_3:37708579-37708598 None:intergenic 40.0%
CAAAATCGATGATATGGCAG+GGG + chr4_3:37708637-37708656 None:intergenic 40.0%
! ATGGGGACTAGAAAGCATAA+GGG + chr4_3:37708847-37708866 None:intergenic 40.0%
AACAGGTCAAAGGATTCTTG+TGG - chr4_3:37709583-37709602 Msa0640110:CDS 40.0%
ATACTAATCCATGGAAGCAG+TGG + chr4_3:37709692-37709711 None:intergenic 40.0%
GCAAAAGAGACCCATGTTTA+GGG - chr4_3:37709933-37709952 Msa0640110:CDS 40.0%
! TCTTTTGACCCCCTAACATA+AGG - chr4_3:37709964-37709983 Msa0640110:exon 40.0%
! CTTTTGACCCCCTAACATAA+GGG - chr4_3:37709965-37709984 Msa0640110:five_prime_UTR 40.0%
!! CGCAACTTGTTGAGAAGATA+AGG + chr4_3:37710009-37710028 None:intergenic 40.0%
TACAATATGGCTAGAGTAGG+AGG - chr4_3:37707898-37707917 Msa0640110:three_prime_UTR 40.0%
GGCTGAAATAGCACAAAACA+AGG - chr4_3:37707981-37708000 Msa0640110:three_prime_UTR 40.0%
AGGTTAAGCATTTGAAGGTG+TGG - chr4_3:37708127-37708146 Msa0640110:three_prime_UTR 40.0%
!! AACATGAAGGCATCATGACT+TGG + chr4_3:37708171-37708190 None:intergenic 40.0%
AAGTCATGATGCCTTCATGT+TGG - chr4_3:37708170-37708189 Msa0640110:CDS 40.0%
AGTCATGATGCCTTCATGTT+GGG - chr4_3:37708171-37708190 Msa0640110:CDS 40.0%
AGAGGCAGAGATATATTACC+AGG + chr4_3:37708334-37708353 None:intergenic 40.0%
CCGGAAATGACCTTTATTAC+AGG + chr4_3:37708438-37708457 None:intergenic 40.0%
! AATTTGCTCAAATTGCAGGG+AGG + chr4_3:37708575-37708594 None:intergenic 40.0%
! CCGAAATTTGCTCAAATTGC+AGG + chr4_3:37708579-37708598 None:intergenic 40.0%
CAAAATCGATGATATGGCAG+GGG + chr4_3:37708637-37708656 None:intergenic 40.0%
! ATGGGGACTAGAAAGCATAA+GGG + chr4_3:37708847-37708866 None:intergenic 40.0%
AACAGGTCAAAGGATTCTTG+TGG - chr4_3:37709583-37709602 Msa0640110:CDS 40.0%
ATACTAATCCATGGAAGCAG+TGG + chr4_3:37709692-37709711 None:intergenic 40.0%
GCAAAAGAGACCCATGTTTA+GGG - chr4_3:37709933-37709952 Msa0640110:CDS 40.0%
! TCTTTTGACCCCCTAACATA+AGG - chr4_3:37709964-37709983 Msa0640110:exon 40.0%
! CTTTTGACCCCCTAACATAA+GGG - chr4_3:37709965-37709984 Msa0640110:five_prime_UTR 40.0%
!! CGCAACTTGTTGAGAAGATA+AGG + chr4_3:37710009-37710028 None:intergenic 40.0%
GTTATCATGGATGTTGCAGC+TGG - chr4_3:37707943-37707962 Msa0640110:three_prime_UTR 45.0%
GATGTTGCAGCTGGTATTCT+TGG - chr4_3:37707952-37707971 Msa0640110:three_prime_UTR 45.0%
!! AGCTGGTATTCTTGGCTTTG+AGG - chr4_3:37707960-37707979 Msa0640110:three_prime_UTR 45.0%
GTCATGATGCCTTCATGTTG+GGG - chr4_3:37708172-37708191 Msa0640110:CDS 45.0%
TACTGAGAGTTGTCTATGGG+AGG + chr4_3:37708295-37708314 None:intergenic 45.0%
ATTCCAAAACAGGACAGGAG+AGG + chr4_3:37708352-37708371 None:intergenic 45.0%
! TGGGGACTAGAAAGCATAAG+GGG + chr4_3:37708846-37708865 None:intergenic 45.0%
! GATGGGGACTAGAAAGCATA+AGG + chr4_3:37708848-37708867 None:intergenic 45.0%
GTTGTTGATCAGGGTTGTAG+TGG - chr4_3:37709519-37709538 Msa0640110:intron 45.0%
GATTGTCCATGCTGGTGATA+GGG - chr4_3:37709548-37709567 Msa0640110:CDS 45.0%
ATTGTCCATGCTGGTGATAG+GGG - chr4_3:37709549-37709568 Msa0640110:CDS 45.0%
TAGGGGCTATGTCAAACAAC+AGG - chr4_3:37709566-37709585 Msa0640110:CDS 45.0%
CACCATCACTTTCTGTCCAT+TGG - chr4_3:37709613-37709632 Msa0640110:CDS 45.0%
CACCAATGGACAGAAAGTGA+TGG + chr4_3:37709618-37709637 None:intergenic 45.0%
CATCACTTTCTGTCCATTGG+TGG - chr4_3:37709616-37709635 Msa0640110:CDS 45.0%
CATTGTTACCACTGCTTCCA+TGG - chr4_3:37709681-37709700 Msa0640110:CDS 45.0%
GGCAAAAGAGACCCATGTTT+AGG - chr4_3:37709932-37709951 Msa0640110:CDS 45.0%
GTTATCATGGATGTTGCAGC+TGG - chr4_3:37707943-37707962 Msa0640110:three_prime_UTR 45.0%
GATGTTGCAGCTGGTATTCT+TGG - chr4_3:37707952-37707971 Msa0640110:three_prime_UTR 45.0%
!! AGCTGGTATTCTTGGCTTTG+AGG - chr4_3:37707960-37707979 Msa0640110:three_prime_UTR 45.0%
GTCATGATGCCTTCATGTTG+GGG - chr4_3:37708172-37708191 Msa0640110:CDS 45.0%
TACTGAGAGTTGTCTATGGG+AGG + chr4_3:37708295-37708314 None:intergenic 45.0%
ATTCCAAAACAGGACAGGAG+AGG + chr4_3:37708352-37708371 None:intergenic 45.0%
! TGGGGACTAGAAAGCATAAG+GGG + chr4_3:37708846-37708865 None:intergenic 45.0%
! GATGGGGACTAGAAAGCATA+AGG + chr4_3:37708848-37708867 None:intergenic 45.0%
GTTGTTGATCAGGGTTGTAG+TGG - chr4_3:37709519-37709538 Msa0640110:intron 45.0%
GATTGTCCATGCTGGTGATA+GGG - chr4_3:37709548-37709567 Msa0640110:CDS 45.0%
ATTGTCCATGCTGGTGATAG+GGG - chr4_3:37709549-37709568 Msa0640110:CDS 45.0%
TAGGGGCTATGTCAAACAAC+AGG - chr4_3:37709566-37709585 Msa0640110:CDS 45.0%
CACCATCACTTTCTGTCCAT+TGG - chr4_3:37709613-37709632 Msa0640110:CDS 45.0%
CACCAATGGACAGAAAGTGA+TGG + chr4_3:37709618-37709637 None:intergenic 45.0%
CATCACTTTCTGTCCATTGG+TGG - chr4_3:37709616-37709635 Msa0640110:CDS 45.0%
CATTGTTACCACTGCTTCCA+TGG - chr4_3:37709681-37709700 Msa0640110:CDS 45.0%
GGCAAAAGAGACCCATGTTT+AGG - chr4_3:37709932-37709951 Msa0640110:CDS 45.0%
TGATGCCTTCATGTTGGGGT+TGG - chr4_3:37708176-37708195 Msa0640110:CDS 50.0%
GATGCCTTCATGTTGGGGTT+GGG - chr4_3:37708177-37708196 Msa0640110:CDS 50.0%
! TTGGGTGCAGCAGTGCTATT+GGG - chr4_3:37708195-37708214 Msa0640110:CDS 50.0%
CCACATTGGCCAAGAGAGTT+GGG + chr4_3:37708921-37708940 None:intergenic 50.0%
ATCAGGGTTGTAGTGGCTGT+TGG - chr4_3:37709526-37709545 Msa0640110:intron 50.0%
GGATTGTCCATGCTGGTGAT+AGG - chr4_3:37709547-37709566 Msa0640110:CDS 50.0%
! TGCGATTATGGCCCCTGTTT+TGG - chr4_3:37710025-37710044 Msa0640110:five_prime_UTR 50.0%
! GCGATTATGGCCCCTGTTTT+GGG - chr4_3:37710026-37710045 Msa0640110:five_prime_UTR 50.0%
TGATGCCTTCATGTTGGGGT+TGG - chr4_3:37708176-37708195 Msa0640110:CDS 50.0%
GATGCCTTCATGTTGGGGTT+GGG - chr4_3:37708177-37708196 Msa0640110:CDS 50.0%
! TTGGGTGCAGCAGTGCTATT+GGG - chr4_3:37708195-37708214 Msa0640110:CDS 50.0%
CCACATTGGCCAAGAGAGTT+GGG + chr4_3:37708921-37708940 None:intergenic 50.0%
ATCAGGGTTGTAGTGGCTGT+TGG - chr4_3:37709526-37709545 Msa0640110:intron 50.0%
GGATTGTCCATGCTGGTGAT+AGG - chr4_3:37709547-37709566 Msa0640110:CDS 50.0%
! TGCGATTATGGCCCCTGTTT+TGG - chr4_3:37710025-37710044 Msa0640110:five_prime_UTR 50.0%
! GCGATTATGGCCCCTGTTTT+GGG - chr4_3:37710026-37710045 Msa0640110:five_prime_UTR 50.0%
TGCACCCAACCCCAACATGA+AGG + chr4_3:37708184-37708203 None:intergenic 55.0%
GTTGGGTGCAGCAGTGCTAT+TGG - chr4_3:37708194-37708213 Msa0640110:CDS 55.0%
! CTGCCTCTCCTGTCCTGTTT+TGG - chr4_3:37708346-37708365 Msa0640110:intron 55.0%
GCCAAGAGAGTTGGGAGTCA+CGG + chr4_3:37708913-37708932 None:intergenic 55.0%
CCCAACTCTCTTGGCCAATG+TGG - chr4_3:37708918-37708937 Msa0640110:intron 55.0%
GCCACATTGGCCAAGAGAGT+TGG + chr4_3:37708922-37708941 None:intergenic 55.0%
GGCTGTTGGATTGTCCATGC+TGG - chr4_3:37709540-37709559 Msa0640110:CDS 55.0%
CATAGCCCCTATCACCAGCA+TGG + chr4_3:37709557-37709576 None:intergenic 55.0%
TGCACCCAACCCCAACATGA+AGG + chr4_3:37708184-37708203 None:intergenic 55.0%
GTTGGGTGCAGCAGTGCTAT+TGG - chr4_3:37708194-37708213 Msa0640110:CDS 55.0%
! CTGCCTCTCCTGTCCTGTTT+TGG - chr4_3:37708346-37708365 Msa0640110:intron 55.0%
GCCAAGAGAGTTGGGAGTCA+CGG + chr4_3:37708913-37708932 None:intergenic 55.0%
CCCAACTCTCTTGGCCAATG+TGG - chr4_3:37708918-37708937 Msa0640110:intron 55.0%
GCCACATTGGCCAAGAGAGT+TGG + chr4_3:37708922-37708941 None:intergenic 55.0%
GGCTGTTGGATTGTCCATGC+TGG - chr4_3:37709540-37709559 Msa0640110:CDS 55.0%
CATAGCCCCTATCACCAGCA+TGG + chr4_3:37709557-37709576 None:intergenic 55.0%
GCCGTGACTCCCAACTCTCT+TGG - chr4_3:37708909-37708928 Msa0640110:intron 60.0%
GCCGTGACTCCCAACTCTCT+TGG - chr4_3:37708909-37708928 Msa0640110:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 37707813 37710055 37707813 ID=Msa0640110;Name=Msa0640110
chr4_3 mRNA 37707813 37710055 37707813 ID=Msa0640110-mRNA-1;Parent=Msa0640110;Name=Msa0640110-mRNA-1;_AED=0.07;_eAED=0.07;_QI=91|1|1|1|1|1|3|347|160
chr4_3 exon 37707813 37708337 37707813 ID=Msa0640110-mRNA-1:exon:8625;Parent=Msa0640110-mRNA-1
chr4_3 exon 37709534 37709739 37709534 ID=Msa0640110-mRNA-1:exon:8624;Parent=Msa0640110-mRNA-1
chr4_3 exon 37709866 37710055 37709866 ID=Msa0640110-mRNA-1:exon:8623;Parent=Msa0640110-mRNA-1
chr4_3 five_prime_UTR 37709965 37710055 37709965 ID=Msa0640110-mRNA-1:five_prime_utr;Parent=Msa0640110-mRNA-1
chr4_3 CDS 37709866 37709964 37709866 ID=Msa0640110-mRNA-1:cds;Parent=Msa0640110-mRNA-1
chr4_3 CDS 37709534 37709739 37709534 ID=Msa0640110-mRNA-1:cds;Parent=Msa0640110-mRNA-1
chr4_3 CDS 37708160 37708337 37708160 ID=Msa0640110-mRNA-1:cds;Parent=Msa0640110-mRNA-1
chr4_3 three_prime_UTR 37707813 37708159 37707813 ID=Msa0640110-mRNA-1:three_prime_utr;Parent=Msa0640110-mRNA-1
Gene Sequence

>Msa0640110

ATGGCTAGAGTAGGAGGCATTGTTGTTTGTCTCCTAATTGTTATCATGGATGTTGCAGCTGGTATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGGTTAAGCATTTGAAGGTGTGGATATTTGAGTGTAGAGAACCAAGTCATGATGCCTTCATGTTGGGGTTGGGTGCAGCAGTGCTATTGGGACTATCACATGTTTTAGCCAATTTGTTAGGTGGTTGCAATTGTGTTTGTTCTCAACAGGAATTTGAGAAGGCTTCCTCCCATAGACAACTCTCAGTACTTTGCCTTATTTTAACCTGGGTTGTAGTGGCTGTTGGATTGTCCATGCTGGTGATAGGGGCTATGTCAAACAACAGGTCAAAGGATTCTTGTGGTTTCTCACACCATCACTTTCTGTCCATTGGTGGAATTTCATGTTTTGTTCATGGTCTCTTCTCTGTTATATATTACATTGTTACCACTGCTTCCATGGATTAG
Protein sequence

>Msa0640110

MARVGGIVVCLLIVIMDVAAGILGFEAEIAQNKVKHLKVWIFECREPSHDAFMLGLGAAVLLGLSHVLANLLGGCNCVCSQQEFEKASSHRQLSVLCLILTWVVVAVGLSMLVIGAMSNNRSKDSCGFSHHHFLSIGGISCFVHGLFSVIYYIVTTASMD*