AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0189560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189560 MtrunA17_Chr2g0304641 95.115 348 11 3 1 348 1 342 0.0 675
Msa0189560 MtrunA17_Chr3g0115691 49.062 320 145 5 38 348 31 341 4.35e-100 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0189560 AT2G41040.1 69.707 307 87 3 46 348 48 352 8.92e-157 444
Msa0189560 AT1G78140.1 52.921 291 128 5 66 348 65 354 6.58e-100 299

Find 108 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTGCTGCTTTGCATTGC+TGG 0.079979 2_1:+4958303 Msa0189560:CDS
TGATTACTTGCGGCTGAAAA+TGG 0.170168 2_1:+4954982 Msa0189560:five_prime_UTR
CTGGATCTGACAGTGACTTC+TGG 0.199104 2_1:+4957007 Msa0189560:CDS
TGTTACATATGGATCAAATT+TGG 0.208897 2_1:-4960358 None:intergenic
TCCCGAAAATTTGCCAAATC+TGG 0.210877 2_1:+4957992 Msa0189560:CDS
TTGTAAGAGCAGATGTTTCT+AGG 0.235494 2_1:+4958243 Msa0189560:CDS
GAGGTTGGCGTCAAAATTTC+AGG 0.262886 2_1:+4957405 Msa0189560:CDS
AACAAATAAAACATCAAATA+TGG 0.272851 2_1:-4960410 None:intergenic
TTCAGGCAAAGTGGCTTTCC+TGG 0.278494 2_1:+4957422 Msa0189560:CDS
TCTTAGTACACGGGTGATTT+CGG 0.316192 2_1:-4959757 None:intergenic
GTTACACTTCATCAACTTCC+TGG 0.317997 2_1:+4959814 Msa0189560:CDS
TCCAGAGTAGGTTCCAGATT+TGG 0.320022 2_1:-4958005 None:intergenic
TCAATGGTTCATAACATATA+GGG 0.366384 2_1:-4956653 None:intergenic
CACTAGCAAAGACGGGTATC+TGG 0.366593 2_1:+4956988 Msa0189560:CDS
TACAGATGTTATTTATAAAT+CGG 0.367282 2_1:-4960557 None:intergenic
AGGCACGAATATTGAACCTT+TGG 0.368132 2_1:-4955220 None:intergenic
AGAAATGAAAAGGTGAAAAC+TGG 0.382522 2_1:+4960461 Msa0189560:three_prime_UTR
ATCAATGGTTCATAACATAT+AGG 0.384751 2_1:-4956654 None:intergenic
TGGATCTGACAGTGACTTCT+GGG 0.394949 2_1:+4957008 Msa0189560:CDS
GGCACGAATATTGAACCTTT+GGG 0.413534 2_1:-4955219 None:intergenic
GACGCCAACCTCTTTCATAT+AGG 0.414654 2_1:-4957394 None:intergenic
GAAAGTGGGATTTAGTAAAA+AGG 0.418898 2_1:-4955172 None:intergenic
TTAAGTACGAAGCAGGATAA+AGG 0.419613 2_1:+4956606 Msa0189560:CDS
AATTGTATTTGATTATTAAG+AGG 0.422776 2_1:-4955134 None:intergenic
GATTACTTGCGGCTGAAAAT+GGG 0.442106 2_1:+4954983 Msa0189560:five_prime_UTR
ATCAAATATTCTTGAAGTTG+AGG 0.451966 2_1:+4960652 Msa0189560:three_prime_UTR
ACGAGAATCAATGTTACATA+TGG 0.452865 2_1:-4960369 None:intergenic
AAGAAGTGGTGGAGTATTTG+TGG 0.460054 2_1:+4959776 Msa0189560:CDS
ATTGTATTTGATTATTAAGA+GGG 0.469023 2_1:-4955133 None:intergenic
CAGAGGTCTTCTCTAGGCTA+TGG 0.469989 2_1:+4960224 Msa0189560:intron
TAGAAACATCTGCTCTTACA+AGG 0.471408 2_1:-4958241 None:intergenic
TTACACTTCATCAACTTCCT+GGG 0.474826 2_1:+4959815 Msa0189560:CDS
GCCAAATCTGGAACCTACTC+TGG 0.475484 2_1:+4958004 Msa0189560:CDS
ATGTTGAAGTTCAACCAAAT+CGG 0.478110 2_1:+4957041 Msa0189560:CDS
TGCCTCCTCTGCTGTTGTTG+TGG 0.483280 2_1:+4955238 Msa0189560:CDS
TATGAACCATTGATAAGAAA+AGG 0.483602 2_1:+4956663 Msa0189560:CDS
GTTTCATTCCTATATGAAAG+AGG 0.483857 2_1:+4957386 Msa0189560:CDS
ATTGTAGTAGAATGGAGAAT+CGG 0.485004 2_1:-4955068 None:intergenic
AGGTCAGCAATATACAGGTC+TGG 0.485814 2_1:+4956935 Msa0189560:intron
TAAATATGCCAGAAATGAAA+AGG 0.486163 2_1:+4960451 Msa0189560:three_prime_UTR
ATCAACTGAACTTGATTCAA+AGG 0.486667 2_1:-4958270 None:intergenic
TAATGAAATCGTAGCATTGA+CGG 0.490015 2_1:-4958060 None:intergenic
AGACATATTACTTACAGCAT+TGG 0.490607 2_1:-4958336 None:intergenic
CTTTATAATGCAGTTCAGAA+TGG 0.495463 2_1:+4957901 Msa0189560:intron
GGAGAAGGCGAGGGCGAAAG+TGG 0.497259 2_1:-4955187 None:intergenic
ATCATAGCATATCTGTCTTG+TGG 0.501888 2_1:-4960631 None:intergenic
ACTTCAGGTCAGCAATATAC+AGG 0.502396 2_1:+4956930 Msa0189560:intron
CATTCCTATATGAAAGAGGT+TGG 0.503405 2_1:+4957390 Msa0189560:CDS
CATATTACTTACAGCATTGG+AGG 0.505667 2_1:-4958333 None:intergenic
TCAGGATTTAAGTACGAAGC+AGG 0.508485 2_1:+4956599 Msa0189560:intron
TTTGGGTTTGAGAGCGGAGA+AGG 0.511189 2_1:-4955202 None:intergenic
ACTTACAAGTTAAGACCAAC+GGG 0.516370 2_1:-4956687 None:intergenic
TTGTAGTAGAATGGAGAATC+GGG 0.520149 2_1:-4955067 None:intergenic
AAGCGGCCATTGTAGTAGAA+TGG 0.520954 2_1:-4955076 None:intergenic
AGCAGCGGTAGTAGCAGAAG+CGG 0.524135 2_1:-4955093 None:intergenic
CTCCACCACTTCTTAGTACA+CGG 0.524333 2_1:-4959767 None:intergenic
AAATCGTACACTAGCAAAGA+CGG 0.529071 2_1:+4956980 Msa0189560:CDS
TATTTGCAGAGGTCTTCTCT+AGG 0.530151 2_1:+4960218 Msa0189560:intron
AGAAGTGGTGGAGTATTTGT+GGG 0.536480 2_1:+4959777 Msa0189560:CDS
CTCCACAACAACAGCAGAGG+AGG 0.537134 2_1:-4955240 None:intergenic
GAGTACTTTGAGCCTGCTAA+AGG 0.538931 2_1:+4957929 Msa0189560:CDS
GTCGATGTTAGCTGTGGAAG+TGG 0.544771 2_1:+4957962 Msa0189560:CDS
GGCTGAAAATGGGACACAGT+GGG 0.546515 2_1:+4954993 Msa0189560:five_prime_UTR
TCTGAACAAGCGTGCAACCC+AGG 0.547187 2_1:-4959832 None:intergenic
GATTCTCCATTCTACTACAA+TGG 0.548162 2_1:+4955070 Msa0189560:exon
CTTTCCTGGTCCTGATGAAG+AGG 0.548244 2_1:+4957436 Msa0189560:CDS
TCAACTGAACTTGATTCAAA+GGG 0.548708 2_1:-4958269 None:intergenic
ACAATCAGACCACCTTTAGC+AGG 0.549004 2_1:-4957941 None:intergenic
CGTCAAAATTTCAGGCAAAG+TGG 0.551579 2_1:+4957413 Msa0189560:CDS
AAAACTGGAGTGTCTAGTAA+AGG 0.553348 2_1:+4960476 Msa0189560:three_prime_UTR
TCTAGTAAAGGTTCACAGGT+TGG 0.559185 2_1:+4960488 Msa0189560:three_prime_UTR
CTTACAGCATTGGAGGGAGA+TGG 0.562732 2_1:-4958326 None:intergenic
CAATATATTGAAATATGTAG+TGG 0.562805 2_1:+4960680 Msa0189560:three_prime_UTR
GTTTGAGAGCGGAGAAGGCG+AGG 0.563644 2_1:-4955197 None:intergenic
TTTGATTATTAAGAGGGTGA+AGG 0.565563 2_1:-4955127 None:intergenic
AAAGACCTTTGCACTTCATG+TGG 0.572535 2_1:+4960269 Msa0189560:CDS
AGTGTCTAGTAAAGGTTCAC+AGG 0.572867 2_1:+4960484 Msa0189560:three_prime_UTR
TGAAGTGTAACGAAGAAAAG+TGG 0.578444 2_1:-4959802 None:intergenic
AACTTACAAGTTAAGACCAA+CGG 0.579343 2_1:-4956688 None:intergenic
TCAGTTGATGCGGTTCATGC+TGG 0.581885 2_1:+4958284 Msa0189560:CDS
TGGGGAAGAAAGAAGCTTGG+CGG 0.585272 2_1:+4955012 Msa0189560:five_prime_UTR
TTTGAGAGCGGAGAAGGCGA+GGG 0.588926 2_1:-4955196 None:intergenic
TTCATATAGGAATGAAACAA+GGG 0.589684 2_1:-4957381 None:intergenic
TGAATCAAGTTCAGTTGATG+CGG 0.590902 2_1:+4958274 Msa0189560:CDS
CATACCTCTTCATCAGGACC+AGG 0.591548 2_1:-4957440 None:intergenic
TAAAGCAATTACTCCAGAGT+AGG 0.594128 2_1:-4958017 None:intergenic
TGAACCTTTGGGTTTGAGAG+CGG 0.595270 2_1:-4955208 None:intergenic
TTGATAAGAAAAGGTCCCGT+TGG 0.597047 2_1:+4956672 Msa0189560:CDS
GAGAAGGCGAGGGCGAAAGT+GGG 0.600598 2_1:-4955186 None:intergenic
AATCGTACACTAGCAAAGAC+GGG 0.601636 2_1:+4956981 Msa0189560:CDS
TGTTGTTGTGGAGTCTCCGT+CGG 0.604285 2_1:+4955250 Msa0189560:CDS
TACTTTGAGCCTGCTAAAGG+TGG 0.614743 2_1:+4957932 Msa0189560:CDS
AGAAACATCTGCTCTTACAA+GGG 0.617587 2_1:-4958240 None:intergenic
TTCTCCGCTCTCAAACCCAA+AGG 0.617708 2_1:+4955204 Msa0189560:CDS
TTTCATATAGGAATGAAACA+AGG 0.621014 2_1:-4957382 None:intergenic
AAGGAAGAAATGAGAAGCAG+CGG 0.625762 2_1:-4955108 None:intergenic
ATATTACTTACAGCATTGGA+GGG 0.629930 2_1:-4958332 None:intergenic
ATCACCCGTGTACTAAGAAG+TGG 0.637175 2_1:+4959762 Msa0189560:CDS
TAAGACCACATGAAGTGCAA+AGG 0.637387 2_1:-4960274 None:intergenic
CAGTGGGGAAGAAAGAAGCT+TGG 0.637931 2_1:+4955009 Msa0189560:five_prime_UTR
ACCCGTGTACTAAGAAGTGG+TGG 0.640111 2_1:+4959765 Msa0189560:CDS
TCCACCACTTCTTAGTACAC+GGG 0.645948 2_1:-4959766 None:intergenic
CGGCTGAAAATGGGACACAG+TGG 0.646024 2_1:+4954992 Msa0189560:five_prime_UTR
CTGATTGTCGATGTTAGCTG+TGG 0.652004 2_1:+4957956 Msa0189560:CDS
AGACTCCACAACAACAGCAG+AGG 0.656848 2_1:-4955243 None:intergenic
GCTGAAAATGGGACACAGTG+GGG 0.668207 2_1:+4954994 Msa0189560:five_prime_UTR
TCATATAGGAATGAAACAAG+GGG 0.670366 2_1:-4957380 None:intergenic
GGTTGCACGCTTGTTCAGAG+AGG 0.670495 2_1:+4959836 Msa0189560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAATATAATAAAAAAC+GGG - chr2_1:4955678-4955697 None:intergenic 10.0%
!! GTCAAAAATATAATAAAAAA+CGG - chr2_1:4955679-4955698 None:intergenic 10.0%
!!! TTTTTTATTATATTTTTGAC+TGG + chr2_1:4955679-4955698 Msa0189560:intron 10.0%
!! AATTTCAAATCTATATATTA+AGG - chr2_1:4959617-4959636 None:intergenic 10.0%
!! AAATATAAATGTAAATCAAA+AGG - chr2_1:4959667-4959686 None:intergenic 10.0%
!! ATTGTATTTGATTATTAAGA+GGG - chr2_1:4955136-4955155 None:intergenic 15.0%
!! AATTGTATTTGATTATTAAG+AGG - chr2_1:4955137-4955156 None:intergenic 15.0%
!! AAAATTATAATTTATACCGA+CGG - chr2_1:4955269-4955288 None:intergenic 15.0%
!! TACAAATATTATTCAAGTAT+GGG - chr2_1:4957497-4957516 None:intergenic 15.0%
!!! ATTTGTAGTTATTGTTTTAA+AGG + chr2_1:4957510-4957529 Msa0189560:intron 15.0%
!!! ACAAAAAAACTTTTATTGAA+CGG - chr2_1:4957691-4957710 None:intergenic 15.0%
!! ATAAATTCAAAATCAAGTAA+AGG - chr2_1:4958124-4958143 None:intergenic 15.0%
!! TTGAAAATTCTTTGTATTAA+AGG + chr2_1:4958445-4958464 Msa0189560:intron 15.0%
!! TAAATCAACAAATATAATTG+TGG - chr2_1:4959066-4959085 None:intergenic 15.0%
!!! ACGTTATTTTTTTTAAAACT+CGG - chr2_1:4959470-4959489 None:intergenic 15.0%
!! AAATCTATATATTAAGGAAA+TGG - chr2_1:4959611-4959630 None:intergenic 15.0%
!! AACAAATAAAACATCAAATA+TGG - chr2_1:4960413-4960432 None:intergenic 15.0%
!!! TACAGATGTTATTTATAAAT+CGG - chr2_1:4960560-4960579 None:intergenic 15.0%
!! GTTAAATAGAGAAAATGAAA+AGG - chr2_1:4955298-4955317 None:intergenic 20.0%
!! AAACTAAATTTAAACCACTT+GGG - chr2_1:4955458-4955477 None:intergenic 20.0%
!!! TTAAATTTAGTTTGCCTAAA+TGG + chr2_1:4955465-4955484 Msa0189560:intron 20.0%
!! CAACTAAATTTAAACCATTT+AGG - chr2_1:4955482-4955501 None:intergenic 20.0%
!! AAAAGTTAGTCAAAGAAAAT+TGG + chr2_1:4955608-4955627 Msa0189560:intron 20.0%
!! TTAGAAAGAATTCAAGATAT+TGG + chr2_1:4956490-4956509 Msa0189560:intron 20.0%
!! ATTTGAGAAATCACATATAT+CGG + chr2_1:4956777-4956796 Msa0189560:intron 20.0%
!! ATACAAAATAGATTGTTACA+TGG + chr2_1:4957084-4957103 Msa0189560:intron 20.0%
!! AAAGGATATTGTACAAATAT+TGG - chr2_1:4957211-4957230 None:intergenic 20.0%
!! TGGAAAAATGGATATTTAAA+AGG - chr2_1:4957229-4957248 None:intergenic 20.0%
!! TCAACAAATAAATGGAAAAA+TGG - chr2_1:4957241-4957260 None:intergenic 20.0%
!!! ATTTTTCCATTTATTTGTTG+AGG + chr2_1:4957240-4957259 Msa0189560:intron 20.0%
!! CTACAAATATTATTCAAGTA+TGG - chr2_1:4957498-4957517 None:intergenic 20.0%
!!! TTATTGTTTTAAAGGTGTTT+TGG + chr2_1:4957518-4957537 Msa0189560:intron 20.0%
!!! CAAAAAAACTTTTATTGAAC+GGG - chr2_1:4957690-4957709 None:intergenic 20.0%
!! TGTTATTAATTAAGCTCAAA+AGG - chr2_1:4957819-4957838 None:intergenic 20.0%
!!! ACTTGATTTTGAATTTATTG+CGG + chr2_1:4958126-4958145 Msa0189560:intron 20.0%
!! AACTATCATGCTAATTAATT+AGG - chr2_1:4958514-4958533 None:intergenic 20.0%
!! CACTCTTATAAACTATTATT+TGG - chr2_1:4958958-4958977 None:intergenic 20.0%
!! AAAAAAATAACGTAATGTGT+AGG + chr2_1:4959477-4959496 Msa0189560:intron 20.0%
!! ACAATTCTCATATGAAAATT+GGG - chr2_1:4959544-4959563 None:intergenic 20.0%
!! TACAATTCTCATATGAAAAT+TGG - chr2_1:4959545-4959564 None:intergenic 20.0%
!!! CTACATGTTTTGAAAAATTA+GGG - chr2_1:4959578-4959597 None:intergenic 20.0%
!!! ACTACATGTTTTGAAAAATT+AGG - chr2_1:4959579-4959598 None:intergenic 20.0%
!! AAATGTAAATCAAAAGGATA+AGG - chr2_1:4959661-4959680 None:intergenic 20.0%
!! TATTTCACACTATTTAAACT+AGG + chr2_1:4959682-4959701 Msa0189560:intron 20.0%
!! ATTTCACACTATTTAAACTA+GGG + chr2_1:4959683-4959702 Msa0189560:intron 20.0%
!! CTATTAATATCAGTTTGATA+AGG - chr2_1:4959995-4960014 None:intergenic 20.0%
!! ATCTTTAAATCATCTTGAAT+CGG - chr2_1:4960193-4960212 None:intergenic 20.0%
!!! GAAGTCTTTTATTATGTTTA+CGG + chr2_1:4960319-4960338 Msa0189560:CDS 20.0%
! TAGAGAAAATGAAAAGGAAA+AGG - chr2_1:4955292-4955311 None:intergenic 25.0%
! CAAACTAAATTTAAACCACT+TGG - chr2_1:4955459-4955478 None:intergenic 25.0%
! CTCTTAAAACTTAAGATCAA+CGG + chr2_1:4955516-4955535 Msa0189560:intron 25.0%
!! GATGTATTTGATCTAGATTT+TGG - chr2_1:4955644-4955663 None:intergenic 25.0%
! AGAAAAACATGTTATAGAGT+CGG + chr2_1:4956218-4956237 Msa0189560:intron 25.0%
!!! GATTTGTTAGTTTATTCATG+AGG + chr2_1:4956393-4956412 Msa0189560:intron 25.0%
!! AGTTTGAGTTCAATTGTTAA+TGG - chr2_1:4956573-4956592 None:intergenic 25.0%
! TCAATGGTTCATAACATATA+GGG - chr2_1:4956656-4956675 None:intergenic 25.0%
! ATCAATGGTTCATAACATAT+AGG - chr2_1:4956657-4956676 None:intergenic 25.0%
! TATGAACCATTGATAAGAAA+AGG + chr2_1:4956663-4956682 Msa0189560:CDS 25.0%
!!! TATAATTTAGTTCTTCTGCA+TGG + chr2_1:4957304-4957323 Msa0189560:intron 25.0%
! TTCATATAGGAATGAAACAA+GGG - chr2_1:4957384-4957403 None:intergenic 25.0%
! TTTCATATAGGAATGAAACA+AGG - chr2_1:4957385-4957404 None:intergenic 25.0%
! ATGACTAATCCTTTATAGAA+AGG + chr2_1:4957625-4957644 Msa0189560:intron 25.0%
! TGACTAATCCTTTATAGAAA+GGG + chr2_1:4957626-4957645 Msa0189560:intron 25.0%
! AAGATATTCCCTTTCTATAA+AGG - chr2_1:4957637-4957656 None:intergenic 25.0%
! TTTATAGAAAGGGAATATCT+TGG + chr2_1:4957636-4957655 Msa0189560:intron 25.0%
! AATTCAAAATCAAGTAAAGG+AGG - chr2_1:4958121-4958140 None:intergenic 25.0%
! ACATTAAATTCATACTTCGT+TGG - chr2_1:4958152-4958171 None:intergenic 25.0%
!! TTAGAATTTAAGAAAGCACA+TGG - chr2_1:4958472-4958491 None:intergenic 25.0%
! AATTCAAATATCCATAGAAG+TGG - chr2_1:4958750-4958769 None:intergenic 25.0%
! AGATCACGTTAAATAAGAAA+TGG + chr2_1:4958898-4958917 Msa0189560:intron 25.0%
! GATCACGTTAAATAAGAAAT+GGG + chr2_1:4958899-4958918 Msa0189560:intron 25.0%
!! TCAAGTAGTATTTTGTATTG+CGG + chr2_1:4959005-4959024 Msa0189560:intron 25.0%
! TCAACAAATATAATTGTGGA+GGG - chr2_1:4959062-4959081 None:intergenic 25.0%
! ATCAACAAATATAATTGTGG+AGG - chr2_1:4959063-4959082 None:intergenic 25.0%
! CAATTCTCATATGAAAATTG+GGG - chr2_1:4959543-4959562 None:intergenic 25.0%
!!! TTTTTCAAAACATGTAGTCA+TGG + chr2_1:4959581-4959600 Msa0189560:intron 25.0%
!! TTTTCAAAACATGTAGTCAT+GGG + chr2_1:4959582-4959601 Msa0189560:intron 25.0%
!! AAATTATTTTCCTGTCAATG+TGG + chr2_1:4959632-4959651 Msa0189560:intron 25.0%
!! AATTATTTTCCTGTCAATGT+GGG + chr2_1:4959633-4959652 Msa0189560:intron 25.0%
! GTCAAATTTCAACTTCTTAA+AGG + chr2_1:4959731-4959750 Msa0189560:intron 25.0%
! CAATAATGAACATCTTTAGA+AGG - chr2_1:4959925-4959944 None:intergenic 25.0%
! ACAAATGATAACTCAACAAA+AGG - chr2_1:4959954-4959973 None:intergenic 25.0%
!!! AAAGATCTTTTTATTTGCAG+AGG + chr2_1:4960207-4960226 Msa0189560:intron 25.0%
!!! ATGGATCAAATTTGGTTTTA+TGG - chr2_1:4960353-4960372 None:intergenic 25.0%
! TGTTACATATGGATCAAATT+TGG - chr2_1:4960361-4960380 None:intergenic 25.0%
! TAAATATGCCAGAAATGAAA+AGG + chr2_1:4960451-4960470 Msa0189560:three_prime_UTR 25.0%
! TATGTGCAAAAATAGTGATT+TGG + chr2_1:4960586-4960605 Msa0189560:three_prime_UTR 25.0%
! ATCAAATATTCTTGAAGTTG+AGG + chr2_1:4960652-4960671 Msa0189560:three_prime_UTR 25.0%
ATTGTAGTAGAATGGAGAAT+CGG - chr2_1:4955071-4955090 None:intergenic 30.0%
TTTGATTATTAAGAGGGTGA+AGG - chr2_1:4955130-4955149 None:intergenic 30.0%
GAAAGTGGGATTTAGTAAAA+AGG - chr2_1:4955175-4955194 None:intergenic 30.0%
TAACGTTACACTCTGAATTA+AGG + chr2_1:4955314-4955333 Msa0189560:intron 30.0%
AATTAAGGAACGAGTTAACT+TGG + chr2_1:4955329-4955348 Msa0189560:intron 30.0%
TGTTAACTGATACACAACTA+AGG + chr2_1:4955407-4955426 Msa0189560:intron 30.0%
! CTTTTGCTTAAAATTGAGAC+CGG - chr2_1:4955593-4955612 None:intergenic 30.0%
TAAAAAACTGTATCGAAGGA+GGG - chr2_1:4955958-4955977 None:intergenic 30.0%
GAACTAAAAAACTGTATCGA+AGG - chr2_1:4955962-4955981 None:intergenic 30.0%
AACTTACAAGTTAAGACCAA+CGG - chr2_1:4956691-4956710 None:intergenic 30.0%
ATCGGTGTAATTATATGTGT+CGG + chr2_1:4956795-4956814 Msa0189560:intron 30.0%
ATGTTGAAGTTCAACCAAAT+CGG + chr2_1:4957041-4957060 Msa0189560:CDS 30.0%
ATGTCACCTCAACAAATAAA+TGG - chr2_1:4957249-4957268 None:intergenic 30.0%
TATTTAAGAACTTCACCAAG+TGG - chr2_1:4957335-4957354 None:intergenic 30.0%
TCATATAGGAATGAAACAAG+GGG - chr2_1:4957383-4957402 None:intergenic 30.0%
GTTTCATTCCTATATGAAAG+AGG + chr2_1:4957386-4957405 Msa0189560:CDS 30.0%
! AGAGTCGGTATTTTATAAGT+AGG + chr2_1:4957556-4957575 Msa0189560:intron 30.0%
! GAGTCGGTATTTTATAAGTA+GGG + chr2_1:4957557-4957576 Msa0189560:intron 30.0%
! AGTCGGTATTTTATAAGTAG+GGG + chr2_1:4957558-4957577 Msa0189560:intron 30.0%
AAGTAGGGGAAATAAGAATA+AGG + chr2_1:4957572-4957591 Msa0189560:intron 30.0%
AGTAGGGGAAATAAGAATAA+GGG + chr2_1:4957573-4957592 Msa0189560:intron 30.0%
! TGTGAATCTAGAGCAATAAA+AGG - chr2_1:4957723-4957742 None:intergenic 30.0%
! GATTCACAACAAATCCATTT+TGG + chr2_1:4957735-4957754 Msa0189560:intron 30.0%
GGTACAAAAAGAGAGATATA+TGG - chr2_1:4957798-4957817 None:intergenic 30.0%
CTTTATAATGCAGTTCAGAA+TGG + chr2_1:4957901-4957920 Msa0189560:intron 30.0%
! TTCCAGATTTGGCAAATTTT+CGG - chr2_1:4957997-4958016 None:intergenic 30.0%
! TAATGAAATCGTAGCATTGA+CGG - chr2_1:4958063-4958082 None:intergenic 30.0%
TCAACTGAACTTGATTCAAA+GGG - chr2_1:4958272-4958291 None:intergenic 30.0%
ATCAACTGAACTTGATTCAA+AGG - chr2_1:4958273-4958292 None:intergenic 30.0%
! ATATTACTTACAGCATTGGA+GGG - chr2_1:4958335-4958354 None:intergenic 30.0%
AGACATATTACTTACAGCAT+TGG - chr2_1:4958339-4958358 None:intergenic 30.0%
TTGATGAAAACCACAATCTT+TGG + chr2_1:4958363-4958382 Msa0189560:intron 30.0%
TGATGAAAACCACAATCTTT+GGG + chr2_1:4958364-4958383 Msa0189560:intron 30.0%
ATGACCGATATTATTGTTGT+AGG + chr2_1:4958406-4958425 Msa0189560:intron 30.0%
CATGCCTACAACAATAATAT+CGG - chr2_1:4958413-4958432 None:intergenic 30.0%
! ATTAGCATGATAGTTTGTGT+TGG + chr2_1:4958519-4958538 Msa0189560:intron 30.0%
!! ATAGTTTGTGTTGGTCATTT+TGG + chr2_1:4958528-4958547 Msa0189560:intron 30.0%
!! TAGTTTGTGTTGGTCATTTT+GGG + chr2_1:4958529-4958548 Msa0189560:intron 30.0%
!! CGATTTGCTTTTGTAAGAAT+CGG - chr2_1:4958644-4958663 None:intergenic 30.0%
TTAGGTTCACACATATATTC+TGG - chr2_1:4958806-4958825 None:intergenic 30.0%
ATATGTGTGAACCTAATACA+AGG + chr2_1:4958810-4958829 Msa0189560:intron 30.0%
ATGACTGTATTGCACATTAT+AGG - chr2_1:4959093-4959112 None:intergenic 30.0%
TCAATCTCTATCTTCAAATG+AGG + chr2_1:4959224-4959243 Msa0189560:intron 30.0%
!!! TTTTTTTAAAACTCGGTACC+CGG - chr2_1:4959463-4959482 None:intergenic 30.0%
ACGAGAATCAATGTTACATA+TGG - chr2_1:4960372-4960391 None:intergenic 30.0%
! AGTTTTCACCTTTTCATTTC+TGG - chr2_1:4960462-4960481 None:intergenic 30.0%
AGAAATGAAAAGGTGAAAAC+TGG + chr2_1:4960461-4960480 Msa0189560:three_prime_UTR 30.0%
!! TGATTTGGAATTCTGTTTTG+CGG + chr2_1:4960601-4960620 Msa0189560:three_prime_UTR 30.0%
TTGTAGTAGAATGGAGAATC+GGG - chr2_1:4955070-4955089 None:intergenic 35.0%
GATTCTCCATTCTACTACAA+TGG + chr2_1:4955070-4955089 Msa0189560:exon 35.0%
GGGATTTAGTAAAAAGGTGA+GGG - chr2_1:4955169-4955188 None:intergenic 35.0%
TGGGATTTAGTAAAAAGGTG+AGG - chr2_1:4955170-4955189 None:intergenic 35.0%
AACTAAGGAACGAGTTAACT+TGG + chr2_1:4955422-4955441 Msa0189560:intron 35.0%
! GCTTTGGGTGGAAAATATAT+GGG + chr2_1:4955776-4955795 Msa0189560:intron 35.0%
CTAAAAAACTGTATCGAAGG+AGG - chr2_1:4955959-4955978 None:intergenic 35.0%
! AAGAAGTACAGAACTTTAGG+GGG - chr2_1:4955986-4956005 None:intergenic 35.0%
! GAAGAAGTACAGAACTTTAG+GGG - chr2_1:4955987-4956006 None:intergenic 35.0%
! GGAAGAAGTACAGAACTTTA+GGG - chr2_1:4955988-4956007 None:intergenic 35.0%
! TGGAAGAAGTACAGAACTTT+AGG - chr2_1:4955989-4956008 None:intergenic 35.0%
! TTAGACTTTGTTTGCGAGTT+TGG - chr2_1:4956055-4956074 None:intergenic 35.0%
AAACTCGCAAACAAAGTCTA+AGG + chr2_1:4956054-4956073 Msa0189560:intron 35.0%
AACTCGCAAACAAAGTCTAA+GGG + chr2_1:4956055-4956074 Msa0189560:intron 35.0%
TAACAAATCATTAGCCCCAA+GGG - chr2_1:4956382-4956401 None:intergenic 35.0%
! TGAACTCAAACTTTTCCTTC+AGG + chr2_1:4956581-4956600 Msa0189560:intron 35.0%
TTAAGTACGAAGCAGGATAA+AGG + chr2_1:4956606-4956625 Msa0189560:CDS 35.0%
ACTTACAAGTTAAGACCAAC+GGG - chr2_1:4956690-4956709 None:intergenic 35.0%
!! GTTGGTCTTAACTTGTAAGT+TGG + chr2_1:4956690-4956709 Msa0189560:intron 35.0%
! GTAATTATATGTGTCGGTGT+CGG + chr2_1:4956801-4956820 Msa0189560:intron 35.0%
CTTAATGACTTTGCAACTTC+AGG + chr2_1:4956915-4956934 Msa0189560:intron 35.0%
AAATCGTACACTAGCAAAGA+CGG + chr2_1:4956980-4956999 Msa0189560:CDS 35.0%
CTAAAAAGTTCAGTCCGATT+TGG - chr2_1:4957058-4957077 None:intergenic 35.0%
! CAAATCGGACTGAACTTTTT+AGG + chr2_1:4957056-4957075 Msa0189560:CDS 35.0%
TGAGAAGTTACTATCACATG+AGG + chr2_1:4957179-4957198 Msa0189560:intron 35.0%
ACTGTGTCTAAACCTTTATC+AGG + chr2_1:4957354-4957373 Msa0189560:intron 35.0%
CATTCCTATATGAAAGAGGT+TGG + chr2_1:4957390-4957409 Msa0189560:CDS 35.0%
! AAAAAGCATACCTCTTCATC+AGG - chr2_1:4957449-4957468 None:intergenic 35.0%
!!! GGTGTTTTGGTAGACATAAT+CGG + chr2_1:4957531-4957550 Msa0189560:intron 35.0%
TAGACATAATCGGTTAGAGT+CGG + chr2_1:4957541-4957560 Msa0189560:intron 35.0%
GTAGGGGAAATAAGAATAAG+GGG + chr2_1:4957574-4957593 Msa0189560:intron 35.0%
TCTGTTCATTTGAGAGTTTG+TGG + chr2_1:4957601-4957620 Msa0189560:intron 35.0%
ATAGAAAGGGAATATCTTGG+AGG + chr2_1:4957639-4957658 Msa0189560:intron 35.0%
GTGTGAGTCATTAACCAAAA+TGG - chr2_1:4957752-4957771 None:intergenic 35.0%
! TCCAGATTTGGCAAATTTTC+GGG - chr2_1:4957996-4958015 None:intergenic 35.0%
TAAAGCAATTACTCCAGAGT+AGG - chr2_1:4958020-4958039 None:intergenic 35.0%
TAAAGGAGGAAAACAATACG+TGG - chr2_1:4958107-4958126 None:intergenic 35.0%
AGAAACATCTGCTCTTACAA+GGG - chr2_1:4958243-4958262 None:intergenic 35.0%
TAGAAACATCTGCTCTTACA+AGG - chr2_1:4958244-4958263 None:intergenic 35.0%
TTGTAAGAGCAGATGTTTCT+AGG + chr2_1:4958243-4958262 Msa0189560:CDS 35.0%
! TGAATCAAGTTCAGTTGATG+CGG + chr2_1:4958274-4958293 Msa0189560:CDS 35.0%
! CATATTACTTACAGCATTGG+AGG - chr2_1:4958336-4958355 None:intergenic 35.0%
! AAAACCACAATCTTTGGGTT+GGG + chr2_1:4958369-4958388 Msa0189560:intron 35.0%
GCACAATGTCATATGATAAG+TGG - chr2_1:4958558-4958577 None:intergenic 35.0%
CTTTAGTTACGACAATGAAG+TGG - chr2_1:4958703-4958722 None:intergenic 35.0%
AGTCAAGATTTCCACTTCTA+TGG + chr2_1:4958736-4958755 Msa0189560:intron 35.0%
GTTAAATAAGAAATGGGCCT+AGG + chr2_1:4958905-4958924 Msa0189560:intron 35.0%
AACCATGACTTTGTGTAAGT+GGG - chr2_1:4959265-4959284 None:intergenic 35.0%
TAACCCATCAAAATTGGCAT+CGG - chr2_1:4959357-4959376 None:intergenic 35.0%
! ATGGACTAACCCATCAAAAT+TGG - chr2_1:4959363-4959382 None:intergenic 35.0%
TCATATGAAAATTGGGGTCA+CGG - chr2_1:4959537-4959556 None:intergenic 35.0%
TGAAGTGTAACGAAGAAAAG+TGG - chr2_1:4959805-4959824 None:intergenic 35.0%
TTACACTTCATCAACTTCCT+GGG + chr2_1:4959815-4959834 Msa0189560:CDS 35.0%
TGATAACTCAACAAAAGGCA+AGG - chr2_1:4959949-4959968 None:intergenic 35.0%
TCATCTTGAATCGGATTCAA+GGG - chr2_1:4960184-4960203 None:intergenic 35.0%
ATCATCTTGAATCGGATTCA+AGG - chr2_1:4960185-4960204 None:intergenic 35.0%
! AAAACTGGAGTGTCTAGTAA+AGG + chr2_1:4960476-4960495 Msa0189560:three_prime_UTR 35.0%
ATCATAGCATATCTGTCTTG+TGG - chr2_1:4960634-4960653 None:intergenic 35.0%
TGATTACTTGCGGCTGAAAA+TGG + chr2_1:4954982-4955001 Msa0189560:five_prime_UTR 40.0%
GATTACTTGCGGCTGAAAAT+GGG + chr2_1:4954983-4955002 Msa0189560:five_prime_UTR 40.0%
AAGGAAGAAATGAGAAGCAG+CGG - chr2_1:4955111-4955130 None:intergenic 40.0%
!! TAAAAAGGTGAGGGCATTTG+GGG - chr2_1:4955160-4955179 None:intergenic 40.0%
!! GTAAAAAGGTGAGGGCATTT+GGG - chr2_1:4955161-4955180 None:intergenic 40.0%
!! AGTAAAAAGGTGAGGGCATT+TGG - chr2_1:4955162-4955181 None:intergenic 40.0%
GGCACGAATATTGAACCTTT+GGG - chr2_1:4955222-4955241 None:intergenic 40.0%
AGGCACGAATATTGAACCTT+TGG - chr2_1:4955223-4955242 None:intergenic 40.0%
TGCTTAAAATTGAGACCGGA+GGG - chr2_1:4955589-4955608 None:intergenic 40.0%
TTGCTTAAAATTGAGACCGG+AGG - chr2_1:4955590-4955609 None:intergenic 40.0%
ATTACATTTACCCCGCTCTA+AGG + chr2_1:4955721-4955740 Msa0189560:intron 40.0%
! CTCTTTGTTTGGGAGTTTGA+AGG + chr2_1:4955744-4955763 Msa0189560:intron 40.0%
GTTTGGGAGTTTGAAGGAAA+AGG + chr2_1:4955750-4955769 Msa0189560:intron 40.0%
!! GGCTTTGGGTGGAAAATATA+TGG + chr2_1:4955775-4955794 Msa0189560:intron 40.0%
!!! GTTTTGGAGGTGGTTTTAGA+TGG - chr2_1:4955936-4955955 None:intergenic 40.0%
! AGAAGTACAGAACTTTAGGG+GGG - chr2_1:4955985-4956004 None:intergenic 40.0%
AGTTCTGTACTTCTTCCACT+TGG + chr2_1:4955991-4956010 Msa0189560:intron 40.0%
GGAAAAATAGAAGGACCAAG+TGG - chr2_1:4956009-4956028 None:intergenic 40.0%
GAGGGCTATGGAAAAATAGA+AGG - chr2_1:4956018-4956037 None:intergenic 40.0%
! ACTTTGTTTGCGAGTTTGGA+GGG - chr2_1:4956051-4956070 None:intergenic 40.0%
! ACAAAGTCTAAGGGTGTGTT+TGG + chr2_1:4956064-4956083 Msa0189560:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG + chr2_1:4956072-4956091 Msa0189560:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr2_1:4956078-4956097 Msa0189560:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr2_1:4956082-4956101 Msa0189560:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr2_1:4956082-4956101 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr2_1:4956078-4956097 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG - chr2_1:4956291-4956310 None:intergenic 40.0%
TAGTTCTCTTAGGGTGTGTT+TGG - chr2_1:4956299-4956318 None:intergenic 40.0%
CAACATGTTGAATGCAAGTC+CGG + chr2_1:4956336-4956355 Msa0189560:intron 40.0%
AACAAATCATTAGCCCCAAG+GGG - chr2_1:4956381-4956400 None:intergenic 40.0%
CTAACAAATCATTAGCCCCA+AGG - chr2_1:4956383-4956402 None:intergenic 40.0%
GCTTCGTACTTAAATCCTGA+AGG - chr2_1:4956599-4956618 None:intergenic 40.0%
TCAGGATTTAAGTACGAAGC+AGG + chr2_1:4956599-4956618 Msa0189560:intron 40.0%
! ACGGGACCTTTTCTTATCAA+TGG - chr2_1:4956672-4956691 None:intergenic 40.0%
TTGATAAGAAAAGGTCCCGT+TGG + chr2_1:4956672-4956691 Msa0189560:CDS 40.0%
TATGCATGAGCTATGAAGCA+CGG + chr2_1:4956718-4956737 Msa0189560:intron 40.0%
ACTTCAGGTCAGCAATATAC+AGG + chr2_1:4956930-4956949 Msa0189560:intron 40.0%
AATCGTACACTAGCAAAGAC+GGG + chr2_1:4956981-4957000 Msa0189560:CDS 40.0%
CGTCAAAATTTCAGGCAAAG+TGG + chr2_1:4957413-4957432 Msa0189560:CDS 40.0%
GTGCATTACAACTACAATGC+TGG - chr2_1:4957475-4957494 None:intergenic 40.0%
TCCCGAAAATTTGCCAAATC+TGG + chr2_1:4957992-4958011 Msa0189560:CDS 40.0%
ATCAGATATCCTCACGCAAA+GGG - chr2_1:4958178-4958197 None:intergenic 40.0%
AATCAGATATCCTCACGCAA+AGG - chr2_1:4958179-4958198 None:intergenic 40.0%
GAAAACCACAATCTTTGGGT+TGG + chr2_1:4958368-4958387 Msa0189560:intron 40.0%
!! AAACCACAATCTTTGGGTTG+GGG + chr2_1:4958370-4958389 Msa0189560:intron 40.0%
TTGCTAGCACTCCTTGTATT+AGG - chr2_1:4958824-4958843 None:intergenic 40.0%
TCACTCCAAGTAAATAGCCT+AGG - chr2_1:4958925-4958944 None:intergenic 40.0%
CAAAGTTACGTATGCACGTT+AGG + chr2_1:4959166-4959185 Msa0189560:intron 40.0%
AACCCACTTACACAAAGTCA+TGG + chr2_1:4959260-4959279 Msa0189560:intron 40.0%
CAACCATGACTTTGTGTAAG+TGG - chr2_1:4959266-4959285 None:intergenic 40.0%
CACTTACACAAAGTCATGGT+TGG + chr2_1:4959264-4959283 Msa0189560:intron 40.0%
!!! TGTCTTGGGATTTTAGAGTG+TGG + chr2_1:4959298-4959317 Msa0189560:intron 40.0%
!!! GTCTTGGGATTTTAGAGTGT+GGG + chr2_1:4959299-4959318 Msa0189560:intron 40.0%
!!! GAGTATCGAACCTGAGATTT+TGG - chr2_1:4959333-4959352 None:intergenic 40.0%
AACCCATCAAAATTGGCATC+GGG - chr2_1:4959356-4959375 None:intergenic 40.0%
TCTTAGTACACGGGTGATTT+CGG - chr2_1:4959760-4959779 None:intergenic 40.0%
! AAGAAGTGGTGGAGTATTTG+TGG + chr2_1:4959776-4959795 Msa0189560:CDS 40.0%
! AGAAGTGGTGGAGTATTTGT+GGG + chr2_1:4959777-4959796 Msa0189560:CDS 40.0%
GTTACACTTCATCAACTTCC+TGG + chr2_1:4959814-4959833 Msa0189560:CDS 40.0%
GACTTTATGACCTCAAGAGA+CGG - chr2_1:4960059-4960078 None:intergenic 40.0%
CTAAGATGACACCTCATGAA+CGG + chr2_1:4960091-4960110 Msa0189560:intron 40.0%
TAGTTAGTACTCCGTTCATG+AGG - chr2_1:4960105-4960124 None:intergenic 40.0%
TATTTGCAGAGGTCTTCTCT+AGG + chr2_1:4960218-4960237 Msa0189560:intron 40.0%
AAAGACCTTTGCACTTCATG+TGG + chr2_1:4960269-4960288 Msa0189560:CDS 40.0%
TAAGACCACATGAAGTGCAA+AGG - chr2_1:4960277-4960296 None:intergenic 40.0%
AGTGTCTAGTAAAGGTTCAC+AGG + chr2_1:4960484-4960503 Msa0189560:three_prime_UTR 40.0%
TCTAGTAAAGGTTCACAGGT+TGG + chr2_1:4960488-4960507 Msa0189560:three_prime_UTR 40.0%
AAGCGGCCATTGTAGTAGAA+TGG - chr2_1:4955079-4955098 None:intergenic 45.0%
! TGAACCTTTGGGTTTGAGAG+CGG - chr2_1:4955211-4955230 None:intergenic 45.0%
TTGGATTGTTCTTGCCCAAG+TGG + chr2_1:4955441-4955460 Msa0189560:intron 45.0%
TGACACTCTAGTCCAAAGGA+AGG + chr2_1:4955540-4955559 Msa0189560:intron 45.0%
AGCTAGAGGTTTCCTTCCTT+TGG - chr2_1:4955555-4955574 None:intergenic 45.0%
!! GGGAGTACTTACTAAGCTAG+AGG - chr2_1:4955569-4955588 None:intergenic 45.0%
AGCTTAGTAAGTACTCCCTC+CGG + chr2_1:4955571-4955590 Msa0189560:intron 45.0%
AAACAAAGAGCCTTAGAGCG+GGG - chr2_1:4955734-4955753 None:intergenic 45.0%
CAAACAAAGAGCCTTAGAGC+GGG - chr2_1:4955735-4955754 None:intergenic 45.0%
CCAAACAAAGAGCCTTAGAG+CGG - chr2_1:4955736-4955755 None:intergenic 45.0%
!! CGCTCTAAGGCTCTTTGTTT+GGG + chr2_1:4955734-4955753 Msa0189560:intron 45.0%
TGGGAGTTTGAAGGAAAAGG+AGG + chr2_1:4955753-4955772 Msa0189560:intron 45.0%
GGGAGTTTGAAGGAAAAGGA+GGG + chr2_1:4955754-4955773 Msa0189560:intron 45.0%
TTGAAGGAAAAGGAGGGCTT+TGG + chr2_1:4955760-4955779 Msa0189560:intron 45.0%
TGAAGGAAAAGGAGGGCTTT+GGG + chr2_1:4955761-4955780 Msa0189560:intron 45.0%
! ACTGTATCGAAGGAGGGTTT+TGG - chr2_1:4955952-4955971 None:intergenic 45.0%
! GAAGTACAGAACTTTAGGGG+GGG - chr2_1:4955984-4956003 None:intergenic 45.0%
! CTTTGTTTGCGAGTTTGGAG+GGG - chr2_1:4956050-4956069 None:intergenic 45.0%
! GACTTTGTTTGCGAGTTTGG+AGG - chr2_1:4956052-4956071 None:intergenic 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG + chr2_1:4956071-4956090 Msa0189560:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr2_1:4956081-4956100 Msa0189560:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr2_1:4956083-4956102 Msa0189560:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr2_1:4956083-4956102 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr2_1:4956081-4956100 None:intergenic 45.0%
CTTAGGGTGTGTTTGGATTG+AGG - chr2_1:4956292-4956311 None:intergenic 45.0%
ACACACCCTAAGAGAACTAG+TGG + chr2_1:4956300-4956319 Msa0189560:intron 45.0%
! CTCCTCCACTAGTTCTCTTA+GGG - chr2_1:4956308-4956327 None:intergenic 45.0%
! TCTCCTCCACTAGTTCTCTT+AGG - chr2_1:4956309-4956328 None:intergenic 45.0%
TTGGTCTAATAGAGCAGGAC+CGG - chr2_1:4956358-4956377 None:intergenic 45.0%
CTCTATTAGACCAACCCCTT+GGG + chr2_1:4956364-4956383 Msa0189560:intron 45.0%
TCTATTAGACCAACCCCTTG+GGG + chr2_1:4956365-4956384 Msa0189560:intron 45.0%
TGAGCTATGAAGCACGGATA+CGG + chr2_1:4956724-4956743 Msa0189560:intron 45.0%
AATGCACTATGAAGCACGGA+CGG - chr2_1:4956840-4956859 None:intergenic 45.0%
TCCGTGCTTCATAGTGCATT+AGG + chr2_1:4956840-4956859 Msa0189560:intron 45.0%
CCCTAATGCACTATGAAGCA+CGG - chr2_1:4956844-4956863 None:intergenic 45.0%
CCGTGCTTCATAGTGCATTA+GGG + chr2_1:4956841-4956860 Msa0189560:intron 45.0%
GCTTCATAGTGCATTAGGGA+AGG + chr2_1:4956845-4956864 Msa0189560:intron 45.0%
AGGTCAGCAATATACAGGTC+TGG + chr2_1:4956935-4956954 Msa0189560:intron 45.0%
TGGATCTGACAGTGACTTCT+GGG + chr2_1:4957008-4957027 Msa0189560:CDS 45.0%
TTCTGCATGGTTCAACCACT+TGG + chr2_1:4957317-4957336 Msa0189560:intron 45.0%
AACAAGGGGACTCCTGATAA+AGG - chr2_1:4957369-4957388 None:intergenic 45.0%
GACGCCAACCTCTTTCATAT+AGG - chr2_1:4957397-4957416 None:intergenic 45.0%
GAGGTTGGCGTCAAAATTTC+AGG + chr2_1:4957405-4957424 Msa0189560:CDS 45.0%
GACTCACACACATCACACAA+AGG + chr2_1:4957763-4957782 Msa0189560:intron 45.0%
ACATCACACAAAGGAAGCTG+CGG + chr2_1:4957772-4957791 Msa0189560:intron 45.0%
GAGTACTTTGAGCCTGCTAA+AGG + chr2_1:4957929-4957948 Msa0189560:CDS 45.0%
TACTTTGAGCCTGCTAAAGG+TGG + chr2_1:4957932-4957951 Msa0189560:CDS 45.0%
ACAATCAGACCACCTTTAGC+AGG - chr2_1:4957944-4957963 None:intergenic 45.0%
CTGATTGTCGATGTTAGCTG+TGG + chr2_1:4957956-4957975 Msa0189560:CDS 45.0%
TCCAGAGTAGGTTCCAGATT+TGG - chr2_1:4958008-4958027 None:intergenic 45.0%
TAATGTTTCCCCTTTGCGTG+AGG + chr2_1:4958166-4958185 Msa0189560:intron 45.0%
TCAGATATCCTCACGCAAAG+GGG - chr2_1:4958177-4958196 None:intergenic 45.0%
!! AACCACAATCTTTGGGTTGG+GGG + chr2_1:4958371-4958390 Msa0189560:intron 45.0%
ATGGGCCTAGGCTATTTACT+TGG + chr2_1:4958917-4958936 Msa0189560:intron 45.0%
!! ATCGAACCTGAGATTTTGGC+AGG - chr2_1:4959329-4959348 None:intergenic 45.0%
!! TCCCCGATGCCAATTTTGAT+GGG + chr2_1:4959351-4959370 Msa0189560:intron 45.0%
ACCCATCAAAATTGGCATCG+GGG - chr2_1:4959355-4959374 None:intergenic 45.0%
GTCCATACATAGCATTGCTC+TGG + chr2_1:4959377-4959396 Msa0189560:intron 45.0%
AGCCAGAGCAATGCTATGTA+TGG - chr2_1:4959382-4959401 None:intergenic 45.0%
!! AGCATTGCTCTGGCTTTACA+TGG + chr2_1:4959387-4959406 Msa0189560:intron 45.0%
!! GCATTGCTCTGGCTTTACAT+GGG + chr2_1:4959388-4959407 Msa0189560:intron 45.0%
!! CATTGCTCTGGCTTTACATG+GGG + chr2_1:4959389-4959408 Msa0189560:intron 45.0%
!! ATTGCTCTGGCTTTACATGG+GGG + chr2_1:4959390-4959409 Msa0189560:intron 45.0%
GGTCACGGAAAGAAATTTGG+AGG - chr2_1:4959522-4959541 None:intergenic 45.0%
TGGGGTCACGGAAAGAAATT+TGG - chr2_1:4959525-4959544 None:intergenic 45.0%
! GATAAGGTACCCACATTGAC+AGG - chr2_1:4959645-4959664 None:intergenic 45.0%
ATCACCCGTGTACTAAGAAG+TGG + chr2_1:4959762-4959781 Msa0189560:CDS 45.0%
TCCACCACTTCTTAGTACAC+GGG - chr2_1:4959769-4959788 None:intergenic 45.0%
CTCCACCACTTCTTAGTACA+CGG - chr2_1:4959770-4959789 None:intergenic 45.0%
ACAACAGTGTCTAGTGTCTG+AGG + chr2_1:4960022-4960041 Msa0189560:intron 45.0%
GGCTGAAAATGGGACACAGT+GGG + chr2_1:4954993-4955012 Msa0189560:five_prime_UTR 50.0%
GCTGAAAATGGGACACAGTG+GGG + chr2_1:4954994-4955013 Msa0189560:five_prime_UTR 50.0%
CAGTGGGGAAGAAAGAAGCT+TGG + chr2_1:4955009-4955028 Msa0189560:five_prime_UTR 50.0%
TGGGGAAGAAAGAAGCTTGG+CGG + chr2_1:4955012-4955031 Msa0189560:five_prime_UTR 50.0%
! TTTGGGTTTGAGAGCGGAGA+AGG - chr2_1:4955205-4955224 None:intergenic 50.0%
TTCTCCGCTCTCAAACCCAA+AGG + chr2_1:4955204-4955223 Msa0189560:CDS 50.0%
AGACTCCACAACAACAGCAG+AGG - chr2_1:4955246-4955265 None:intergenic 50.0%
TGTTGTTGTGGAGTCTCCGT+CGG + chr2_1:4955250-4955269 Msa0189560:CDS 50.0%
CGGATGACACTCTAGTCCAA+AGG + chr2_1:4955536-4955555 Msa0189560:intron 50.0%
!! CCGCTCTAAGGCTCTTTGTT+TGG + chr2_1:4955733-4955752 Msa0189560:intron 50.0%
!! GTATCGAAGGAGGGTTTTGG+AGG - chr2_1:4955949-4955968 None:intergenic 50.0%
TTTGCGAGTTTGGAGGGGAA+GGG - chr2_1:4956045-4956064 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG + chr2_1:4956087-4956106 Msa0189560:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG - chr2_1:4956275-4956294 None:intergenic 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG - chr2_1:4956087-4956106 None:intergenic 50.0%
CACCCTAAGAGAACTAGTGG+AGG + chr2_1:4956303-4956322 Msa0189560:intron 50.0%
!! AGGGGTTGGTCTAATAGAGC+AGG - chr2_1:4956363-4956382 None:intergenic 50.0%
GCTCTATTAGACCAACCCCT+TGG + chr2_1:4956363-4956382 Msa0189560:intron 50.0%
AATCATTAGCCCCAAGGGGT+TGG - chr2_1:4956377-4956396 None:intergenic 50.0%
CACTAGCAAAGACGGGTATC+TGG + chr2_1:4956988-4957007 Msa0189560:CDS 50.0%
CTGGATCTGACAGTGACTTC+TGG + chr2_1:4957007-4957026 Msa0189560:CDS 50.0%
TTCAGGCAAAGTGGCTTTCC+TGG + chr2_1:4957422-4957441 Msa0189560:CDS 50.0%
CTTTCCTGGTCCTGATGAAG+AGG + chr2_1:4957436-4957455 Msa0189560:CDS 50.0%
CATACCTCTTCATCAGGACC+AGG - chr2_1:4957443-4957462 None:intergenic 50.0%
GTCGATGTTAGCTGTGGAAG+TGG + chr2_1:4957962-4957981 Msa0189560:CDS 50.0%
! GCCAAATCTGGAACCTACTC+TGG + chr2_1:4958004-4958023 Msa0189560:CDS 50.0%
! TCAGTTGATGCGGTTCATGC+TGG + chr2_1:4958284-4958303 Msa0189560:CDS 50.0%
! CTTACAGCATTGGAGGGAGA+TGG - chr2_1:4958329-4958348 None:intergenic 50.0%
TACCCCCAACCCAAAGATTG+TGG - chr2_1:4958376-4958395 None:intergenic 50.0%
! ACACAAAGTCATGGTTGGCC+TGG + chr2_1:4959269-4959288 Msa0189560:intron 50.0%
!! AAAGTCATGGTTGGCCTGGT+GGG + chr2_1:4959273-4959292 Msa0189560:intron 50.0%
! CTCCCCGATGCCAATTTTGA+TGG + chr2_1:4959350-4959369 Msa0189560:intron 50.0%
AATCCAACCGTCCACTTGTG+GGG - chr2_1:4959416-4959435 None:intergenic 50.0%
CAATCCAACCGTCCACTTGT+GGG - chr2_1:4959417-4959436 None:intergenic 50.0%
! TTGGATTGGACCCCTCGAAT+CGG + chr2_1:4959429-4959448 Msa0189560:intron 50.0%
ACCCGTGTACTAAGAAGTGG+TGG + chr2_1:4959765-4959784 Msa0189560:CDS 50.0%
AGGCACAATGTTGACGACTC+AGG - chr2_1:4959905-4959924 None:intergenic 50.0%
CAGTGTCTAGTGTCTGAGGA+TGG + chr2_1:4960026-4960045 Msa0189560:intron 50.0%
TGGTTGAACTCCGTCTCTTG+AGG + chr2_1:4960046-4960065 Msa0189560:intron 50.0%
CAGAGGTCTTCTCTAGGCTA+TGG + chr2_1:4960224-4960243 Msa0189560:intron 50.0%
CGGCTGAAAATGGGACACAG+TGG + chr2_1:4954992-4955011 Msa0189560:five_prime_UTR 55.0%
AGCAGCGGTAGTAGCAGAAG+CGG - chr2_1:4955096-4955115 None:intergenic 55.0%
TTTGAGAGCGGAGAAGGCGA+GGG - chr2_1:4955199-4955218 None:intergenic 55.0%
TGCCTCCTCTGCTGTTGTTG+TGG + chr2_1:4955238-4955257 Msa0189560:CDS 55.0%
CTCCACAACAACAGCAGAGG+AGG - chr2_1:4955243-4955262 None:intergenic 55.0%
!! AGGAAAAGGAGGGCTTTGGG+TGG + chr2_1:4955764-4955783 Msa0189560:intron 55.0%
!!! TCGAAGGAGGGTTTTGGAGG+TGG - chr2_1:4955946-4955965 None:intergenic 55.0%
GTTTGCGAGTTTGGAGGGGA+AGG - chr2_1:4956046-4956065 None:intergenic 55.0%
GATTGAGGGTTTAGGAGGGG+AGG + chr2_1:4956086-4956105 Msa0189560:intron 55.0%
TGAAGCACGGATACGGACAC+CGG + chr2_1:4956731-4956750 Msa0189560:intron 55.0%
AGCAGTGTCTGTGTCGTGTC+CGG - chr2_1:4956753-4956772 None:intergenic 55.0%
!! CTGGTGCTGCTTTGCATTGC+TGG + chr2_1:4958303-4958322 Msa0189560:CDS 55.0%
!! CAAAGTCATGGTTGGCCTGG+TGG + chr2_1:4959272-4959291 Msa0189560:intron 55.0%
!! AAGTCATGGTTGGCCTGGTG+GGG + chr2_1:4959274-4959293 Msa0189560:intron 55.0%
AATCCCAAGACAACCCCACC+AGG - chr2_1:4959290-4959309 None:intergenic 55.0%
GGTGCTCCTGCCAAAATCTC+AGG + chr2_1:4959320-4959339 Msa0189560:intron 55.0%
CCAATCCAACCGTCCACTTG+TGG - chr2_1:4959418-4959437 None:intergenic 55.0%
CCACAAGTGGACGGTTGGAT+TGG + chr2_1:4959415-4959434 Msa0189560:intron 55.0%
AAAACTCGGTACCCGGCACA+AGG - chr2_1:4959456-4959475 None:intergenic 55.0%
TCTGAACAAGCGTGCAACCC+AGG - chr2_1:4959835-4959854 None:intergenic 55.0%
GGTTGCACGCTTGTTCAGAG+AGG + chr2_1:4959836-4959855 Msa0189560:CDS 55.0%
GAGAAGGCGAGGGCGAAAGT+GGG - chr2_1:4955189-4955208 None:intergenic 60.0%
GTTTGAGAGCGGAGAAGGCG+AGG - chr2_1:4955200-4955219 None:intergenic 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr2_1:4956040-4956059 None:intergenic 60.0%
CGAGTTTGGAGGGGAAGGGA+GGG - chr2_1:4956041-4956060 None:intergenic 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - chr2_1:4956270-4956289 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - chr2_1:4956271-4956290 None:intergenic 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG - chr2_1:4956272-4956291 None:intergenic 60.0%
TTGGCCTGGTGGGGTTGTCT+TGG + chr2_1:4959283-4959302 Msa0189560:intron 60.0%
TGGCCTGGTGGGGTTGTCTT+GGG + chr2_1:4959284-4959303 Msa0189560:intron 60.0%
TTACATGGGGGCCCCACAAG+TGG + chr2_1:4959402-4959421 Msa0189560:intron 60.0%
!! GGCACAAGGACCGATTCGAG+GGG - chr2_1:4959442-4959461 None:intergenic 60.0%
!! CGGCACAAGGACCGATTCGA+GGG - chr2_1:4959443-4959462 None:intergenic 60.0%
CCTCGAATCGGTCCTTGTGC+CGG + chr2_1:4959441-4959460 Msa0189560:intron 60.0%
CTCGAATCGGTCCTTGTGCC+GGG + chr2_1:4959442-4959461 Msa0189560:intron 60.0%
GGAGAAGGCGAGGGCGAAAG+TGG - chr2_1:4955190-4955209 None:intergenic 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG - chr2_1:4956036-4956055 None:intergenic 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG - chr2_1:4956037-4956056 None:intergenic 65.0%
GCGAGTTTGGAGGGGAAGGG+AGG - chr2_1:4956042-4956061 None:intergenic 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG - chr2_1:4956266-4956285 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - chr2_1:4956267-4956286 None:intergenic 65.0%
GAAGCACGGACGGACACGTG+TGG - chr2_1:4956830-4956849 None:intergenic 65.0%
ATGGGGGCCCCACAAGTGGA+CGG + chr2_1:4959406-4959425 Msa0189560:intron 65.0%
!! CCGGCACAAGGACCGATTCG+AGG - chr2_1:4959444-4959463 None:intergenic 65.0%
GGGAAGGGAGGGGAGGGCTA+TGG - chr2_1:4956030-4956049 None:intergenic 70.0%
GGGCCCCACAAGTGGACGGT+TGG + chr2_1:4959410-4959429 Msa0189560:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 4954981 4960702 4954981 ID=Msa0189560;Name=Msa0189560
chr2_1 mRNA 4954981 4960702 4954981 ID=Msa0189560-mRNA-1;Parent=Msa0189560;Name=Msa0189560-mRNA-1;_AED=0.04;_eAED=0.04;_QI=108|1|1|1|1|1|8|347|348
chr2_1 exon 4954981 4955271 4954981 ID=Msa0189560-mRNA-1:exon:2178;Parent=Msa0189560-mRNA-1
chr2_1 exon 4956603 4956703 4956603 ID=Msa0189560-mRNA-1:exon:2179;Parent=Msa0189560-mRNA-1
chr2_1 exon 4956937 4957077 4956937 ID=Msa0189560-mRNA-1:exon:2180;Parent=Msa0189560-mRNA-1
chr2_1 exon 4957376 4957457 4957376 ID=Msa0189560-mRNA-1:exon:2181;Parent=Msa0189560-mRNA-1
chr2_1 exon 4957914 4958107 4957914 ID=Msa0189560-mRNA-1:exon:2182;Parent=Msa0189560-mRNA-1
chr2_1 exon 4958232 4958343 4958232 ID=Msa0189560-mRNA-1:exon:2183;Parent=Msa0189560-mRNA-1
chr2_1 exon 4959753 4959857 4959753 ID=Msa0189560-mRNA-1:exon:2184;Parent=Msa0189560-mRNA-1
chr2_1 exon 4960227 4960702 4960227 ID=Msa0189560-mRNA-1:exon:2185;Parent=Msa0189560-mRNA-1
chr2_1 five_prime_UTR 4954981 4955088 4954981 ID=Msa0189560-mRNA-1:five_prime_utr;Parent=Msa0189560-mRNA-1
chr2_1 CDS 4955089 4955271 4955089 ID=Msa0189560-mRNA-1:cds;Parent=Msa0189560-mRNA-1
chr2_1 CDS 4956603 4956703 4956603 ID=Msa0189560-mRNA-1:cds;Parent=Msa0189560-mRNA-1
chr2_1 CDS 4956937 4957077 4956937 ID=Msa0189560-mRNA-1:cds;Parent=Msa0189560-mRNA-1
chr2_1 CDS 4957376 4957457 4957376 ID=Msa0189560-mRNA-1:cds;Parent=Msa0189560-mRNA-1
chr2_1 CDS 4957914 4958107 4957914 ID=Msa0189560-mRNA-1:cds;Parent=Msa0189560-mRNA-1
chr2_1 CDS 4958232 4958343 4958232 ID=Msa0189560-mRNA-1:cds;Parent=Msa0189560-mRNA-1
chr2_1 CDS 4959753 4959857 4959753 ID=Msa0189560-mRNA-1:cds;Parent=Msa0189560-mRNA-1
chr2_1 CDS 4960227 4960355 4960227 ID=Msa0189560-mRNA-1:cds;Parent=Msa0189560-mRNA-1
chr2_1 three_prime_UTR 4960356 4960702 4960356 ID=Msa0189560-mRNA-1:three_prime_utr;Parent=Msa0189560-mRNA-1
Gene Sequence

>Msa0189560

ATGGCCGCTTCTGCTACTACCGCTGCTTCTCATTTCTTCCTTCACCCTCTTAATAATCAAATACAATTCCCCAAATGCCCTCACCTTTTTACTAAATCCCACTTTCGCCCTCGCCTTCTCCGCTCTCAAACCCAAAGGTTCAATATTCGTGCCTCCTCTGCTGTTGTTGTGGAGTCTCCGTCGGATTTAAGTACGAAGCAGGATAAAGGAACACAAGTTGACTTATTCGCATGCCCTATATGTTATGAACCATTGATAAGAAAAGGTCCCGTTGGTCTTAACTTGTCAGCAATATACAGGTCTGGTTTCAAGTGTAAGAGATGTCAAAAATCGTACACTAGCAAAGACGGGTATCTGGATCTGACAGTGACTTCTGGGTTGAGAGATTATGTTGAAGTTCAACCAAATCGGACTGAACTTTTTAGGAGTCCCCTTGTTTCATTCCTATATGAAAGAGGTTGGCGTCAAAATTTCAGGCAAAGTGGCTTTCCTGGTCCTGATGAAGAGTTCAGAATGGCTCAAGAGTACTTTGAGCCTGCTAAAGGTGGTCTGATTGTCGATGTTAGCTGTGGAAGTGGTCTATTTTCCCGAAAATTTGCCAAATCTGGAACCTACTCTGGAGTAATTGCTTTAGATTTTTCTGAAAATATGCTCCGTCAATGCTACGATTTCATTAAGAAAGATGACACACTATCAACCACTAATCTTGCCCTTGTAAGAGCAGATGTTTCTAGGCTTCCCTTTGAATCAAGTTCAGTTGATGCGGTTCATGCTGGTGCTGCTTTGCATTGCTGGCCATCTCCCTCCAATGCTGTTGCCGAAATCACCCGTGTACTAAGAAGTGGTGGAGTATTTGTGGGAACCACTTTTCTTCGTTACACTTCATCAACTTCCTGGGTTGCACGCTTGTTCAGAGAGAGGTCTTCTCTAGGCTATGGCTACTTAACAGAAGAAGAAATTAAAGACCTTTGCACTTCATGTGGTCTTACAAATTACTCATGCAAAATTCTGAAGTCTTTTATTATGTTTACGGCTCAGAAGCCATAA

Protein sequence

>Msa0189560

MAASATTAASHFFLHPLNNQIQFPKCPHLFTKSHFRPRLLRSQTQRFNIRASSAVVVESPSDLSTKQDKGTQVDLFACPICYEPLIRKGPVGLNLSAIYRSGFKCKRCQKSYTSKDGYLDLTVTSGLRDYVEVQPNRTELFRSPLVSFLYERGWRQNFRQSGFPGPDEEFRMAQEYFEPAKGGLIVDVSCGSGLFSRKFAKSGTYSGVIALDFSENMLRQCYDFIKKDDTLSTTNLALVRADVSRLPFESSSVDAVHAGAALHCWPSPSNAVAEITRVLRSGGVFVGTTFLRYTSSTSWVARLFRERSSLGYGYLTEEEIKDLCTSCGLTNYSCKILKSFIMFTAQKP*