AlfalfaGEDB | Msa0543560

M. sativa cultivar zhongmu-4 / Msa0543560

KEGG: -
GO: -
PFAM: PF06749.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0543560	XP_013455526.1	97.500	160	4	0	1	160	1	160	1.71e-108	316

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0543560	sp\|Q9ZV57\|DEAL1_ARATH	63.750	160	58	0	1	160	1	160	1.37e-76	228

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0543560	A0A072UIQ5	97.500	160	4	0	1	160	1	160	8.15e-109	316

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017670	Msa0543560	0.835207	1.919044e-56	-8.615850e-47
Msa0017930	Msa0543560	0.815686	8.138737e-52	-8.615850e-47
Msa0033220	Msa0543560	0.802036	6.785866e-49	-8.615850e-47
Msa0042640	Msa0543560	0.851663	7.665855e-61	-8.615850e-47
Msa0044160	Msa0543560	0.822544	2.238551e-53	-8.615850e-47
Msa0063940	Msa0543560	0.800264	1.563522e-48	-8.615850e-47
Msa0077340	Msa0543560	0.840417	8.807639e-58	-8.615850e-47
Msa0077560	Msa0543560	0.804023	2.635515e-49	-8.615850e-47
Msa0098040	Msa0543560	0.834667	2.625942e-56	-8.615850e-47
Msa0105650	Msa0543560	0.805622	1.221442e-49	-8.615850e-47
Msa0125360	Msa0543560	0.830998	2.140758e-55	-8.615850e-47
Msa0146930	Msa0543560	0.801073	1.069338e-48	-8.615850e-47
Msa0152220	Msa0543560	0.803499	3.386028e-49	-8.615850e-47
Msa0152850	Msa0543560	0.811771	5.924907e-51	-8.615850e-47
Msa0188620	Msa0543560	0.803029	4.236340e-49	-8.615850e-47
Msa0198990	Msa0543560	0.811708	6.115584e-51	-8.615850e-47
Msa0230780	Msa0543560	0.813324	2.711295e-51	-8.615850e-47
Msa0235290	Msa0543560	0.843077	1.748715e-58	-8.615850e-47
Msa0365210	Msa0543560	0.852099	5.764946e-61	-8.615850e-47
Msa0372300	Msa0543560	0.817410	3.346528e-52	-8.615850e-47
Msa0375330	Msa0543560	-0.824956	6.092600e-54	-8.615850e-47
Msa0402070	Msa0543560	-0.801200	1.007311e-48	-8.615850e-47
Msa0408360	Msa0543560	0.808523	2.970335e-50	-8.615850e-47
Msa0408380	Msa0543560	0.843675	1.211246e-58	-8.615850e-47
Msa0412790	Msa0543560	0.817870	2.634658e-52	-8.615850e-47
Msa0437520	Msa0543560	0.809719	1.646393e-50	-8.615850e-47
Msa0457560	Msa0543560	0.846492	2.099659e-59	-8.615850e-47
Msa0240900	Msa0543560	0.810848	9.397672e-51	-8.615850e-47
Msa0263230	Msa0543560	0.825948	3.548642e-54	-8.615850e-47
Msa0270280	Msa0543560	0.805180	1.511591e-49	-8.615850e-47
Msa0281470	Msa0543560	0.833447	5.305965e-56	-8.615850e-47
Msa0284800	Msa0543560	0.804569	2.028458e-49	-8.615850e-47
Msa0300840	Msa0543560	0.802156	6.411576e-49	-8.615850e-47
Msa0307270	Msa0543560	0.816262	6.055234e-52	-8.615850e-47
Msa0307670	Msa0543560	0.831739	1.406936e-55	-8.615850e-47
Msa0313900	Msa0543560	0.856890	2.369220e-62	-8.615850e-47
Msa0321620	Msa0543560	0.830065	3.621580e-55	-8.615850e-47
Msa0330520	Msa0543560	0.850344	1.804965e-60	-8.615850e-47
Msa0338340	Msa0543560	0.813684	2.259255e-51	-8.615850e-47
Msa0349210	Msa0543560	0.807418	5.104173e-50	-8.615850e-47
Msa0512630	Msa0543560	0.814945	1.189529e-51	-8.615850e-47
Msa0513970	Msa0543560	0.831260	1.846150e-55	-8.615850e-47
Msa0519820	Msa0543560	0.829352	5.401271e-55	-8.615850e-47
Msa0519830	Msa0543560	0.801200	1.007418e-48	-8.615850e-47
Msa0523490	Msa0543560	-0.802412	5.680235e-49	-8.615850e-47
Msa0529030	Msa0543560	0.826422	2.736125e-54	-8.615850e-47
Msa0543560	Msa0576790	0.806968	6.356201e-50	-8.615850e-47
Msa0543560	Msa0579160	0.824681	7.075587e-54	-8.615850e-47
Msa0543560	Msa0579220	0.822993	1.759550e-53	-8.615850e-47
Msa0543560	Msa0596840	0.831047	2.082516e-55	-8.615850e-47
Msa0543560	Msa0599420	0.957691	1.470972e-115	-8.615850e-47
Msa0543560	Msa0610690	0.833427	5.367108e-56	-8.615850e-47
Msa0543560	Msa0611210	0.845451	4.029318e-59	-8.615850e-47
Msa0543560	Msa0624420	0.835975	1.227171e-56	-8.615850e-47
Msa0543560	Msa0640110	0.843000	1.833115e-58	-8.615850e-47
Msa0543560	Msa0645960	0.814004	1.921476e-51	-8.615850e-47
Msa0543560	Msa0651550	0.826127	3.216814e-54	-8.615850e-47
Msa0543560	Msa0652770	0.802699	4.955084e-49	-8.615850e-47
Msa0543560	Msa0657710	0.819200	1.315650e-52	-8.615850e-47
Msa0543560	Msa0657720	0.817997	2.466456e-52	-8.615850e-47
Msa0543560	Msa0662820	0.808279	3.348149e-50	-8.615850e-47
Msa0543560	Msa0674480	0.860814	1.588419e-63	-8.615850e-47
Msa0543560	Msa0674560	0.838284	3.150088e-57	-8.615850e-47
Msa0543560	Msa0678380	0.843474	1.370479e-58	-8.615850e-47
Msa0543560	Msa0693340	-0.810539	1.096011e-50	-8.615850e-47
Msa0543560	Msa0702720	0.806343	8.615418e-50	-8.615850e-47
Msa0543560	Msa0702790	0.815865	7.427390e-52	-8.615850e-47
Msa0543560	Msa0702800	0.817771	2.774148e-52	-8.615850e-47
Msa0543560	Msa0703950	0.824745	6.833665e-54	-8.615850e-47
Msa0543560	Msa0720410	0.801006	1.103466e-48	-8.615850e-47
Msa0543560	Msa0722890	0.802736	4.870648e-49	-8.615850e-47
Msa0543560	Msa0723090	0.816977	4.187777e-52	-8.615850e-47
Msa0543560	Msa0734250	0.812273	4.605905e-51	-8.615850e-47
Msa0543560	Msa0742370	-0.807820	4.194162e-50	-8.615850e-47
Msa0543560	Msa0772220	0.806810	6.865391e-50	-8.615850e-47
Msa0543560	Msa0792370	0.823062	1.695722e-53	-8.615850e-47
Msa0543560	Msa0795750	0.876868	9.910356e-69	-8.615850e-47
Msa0543560	Msa0822730	0.810404	1.172418e-50	-8.615850e-47
Msa0543560	Msa0826950	0.827568	1.455778e-54	-8.615850e-47
Msa0543560	Msa0828950	0.819301	1.248294e-52	-8.615850e-47
Msa0543560	Msa0828960	0.819290	1.254929e-52	-8.615850e-47
Msa0543560	Msa0829300	0.821731	3.453833e-53	-8.615850e-47
Msa0543560	Msa0829330	0.820737	5.857421e-53	-8.615850e-47
Msa0543560	Msa0833530	0.846442	2.166173e-59	-8.615850e-47
Msa0543560	Msa0862480	-0.808363	3.213592e-50	-8.615850e-47
Msa0543560	Msa0967170	0.835404	1.711161e-56	-8.615850e-47
Msa0543560	Msa1040150	0.800322	1.521649e-48	-8.615850e-47
Msa0543560	Msa1044250	0.818847	1.582850e-52	-8.615850e-47
Msa0543560	Msa1044680	0.814696	1.351074e-51	-8.615850e-47
Msa0543560	Msa1072940	0.809827	1.560988e-50	-8.615850e-47
Msa0543560	Msa1105640	0.808151	3.566036e-50	-8.615850e-47
Msa0543560	Msa1106590	0.814544	1.459404e-51	-8.615850e-47
Msa0543560	Msa1190180	0.827532	1.485695e-54	-8.615850e-47
Msa0543560	Msa1194240	0.827077	1.909131e-54	-8.615850e-47
Msa0543560	Msa1258000	0.807210	5.650828e-50	-8.615850e-47
Msa0543560	Msa1327800	0.803116	4.065066e-49	-8.615850e-47
Msa0543560	Msa1341840	0.822939	1.810724e-53	-8.615850e-47
Msa0543560	Msa1345100	0.802662	5.043743e-49	-8.615850e-47
Msa0543560	Msa1348170	-0.835271	1.849515e-56	-8.615850e-47
Msa0543560	Msa1356600	-0.840803	6.975978e-58	-8.615850e-47
Msa0543560	Msa1368390	0.808801	2.590613e-50	-8.615850e-47
Msa0543560	Msa1382300	0.832721	8.042270e-56	-8.615850e-47
Msa0543560	Msa1389900	0.830156	3.442325e-55	-8.615850e-47
Msa0543560	Msa1401670	0.805916	1.059346e-49	-8.615850e-47
Msa0543560	Msa1405460	0.827578	1.447627e-54	-8.615850e-47
Msa0543560	Msa1412000	0.808891	2.478965e-50	-8.615850e-47
Msa0543560	Msa1417380	0.829829	4.135397e-55	-8.615850e-47
Msa0543560	Msa1418080	0.803635	3.172779e-49	-8.615850e-47
Msa0543560	Msa1422860	0.832210	1.076327e-55	-8.615850e-47
Msa0543560	Msa1427100	0.810343	1.208675e-50	-8.615850e-47
Msa0543560	Msa1434220	0.818905	1.535740e-52	-8.615850e-47
Msa0543560	Msa1461370	0.807414	5.115303e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0543560	MtrunA17_Chr4g0023621	97.500	160	4	1	160	1	160	1.57e-112	316
Msa0543560	MtrunA17_Chr2g0323081	71.519	158	45	1	158	1	158	1.65e-80	235
Msa0543560	MtrunA17_Chr4g0049001	55.696	158	70	1	158	1	158	9.91e-68	202
Msa0543560	MtrunA17_Chr2g0280491	55.063	158	71	1	158	1	158	2.90e-59	182

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0543560	AT2G32280.1	63.750	160	58	0	1	160	1	160	1.39e-77	228
Msa0543560	AT2G32280.2	63.750	160	58	0	1	160	1	160	1.39e-77	228
Msa0543560	AT4G21310.1	63.291	158	58	0	1	158	1	158	1.81e-72	215
Msa0543560	AT4G21310.2	60.000	120	48	0	39	158	1	120	1.37e-51	161
Msa0543560	AT1G11500.1	39.375	160	90	1	6	158	6	165	1.43e-33	117
Msa0543560	AT1G11500.3	39.375	160	90	1	6	158	11	170	2.17e-33	117
Msa0543560	AT1G11500.2	42.105	114	66	0	45	158	24	137	2.14e-27	100
Msa0543560	AT1G05291.1	40.000	145	80	3	12	153	23	163	6.62e-24	92.8

Find 64 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTTCAAAATGTTGCGATTT+TGG	0.145111	4_1:+30019074	Msa0543560:three_prime_UTR
ATTGAAAACACAAATATTTC+TGG	0.152103	4_1:-30017068	None:intergenic
TGCGATTATGGCCCCTGTTT+TGG	0.195648	4_1:+30019207	Msa0543560:three_prime_UTR
TTCTCAACAAGTTGCGATTA+TGG	0.218709	4_1:+30019195	Msa0543560:three_prime_UTR
GATGTTGCAGCTGGTATTCT+TGG	0.255223	4_1:+30017144	Msa0543560:CDS
GATCATATTTCCCTTATGTT+AGG	0.278447	4_1:-30019157	None:intergenic
GTTGGGTGCAGCAGTGCTAT+TGG	0.296588	4_1:+30017386	Msa0543560:CDS
TGATTTACTCATTATTATCT+TGG	0.313721	4_1:+30019026	Msa0543560:three_prime_UTR
TTGGGTGCAGCAGTGCTATT+GGG	0.315421	4_1:+30017387	Msa0543560:CDS
CAATTGTGTTTGTTCTCAAC+AGG	0.330421	4_1:+30017446	Msa0543560:CDS
ATTGCAACCACCTAACAAAT+TGG	0.332978	4_1:-30017427	None:intergenic
GGCAAAAGTGACCCATGTTT+AGG	0.334308	4_1:+30019114	Msa0543560:three_prime_UTR
GGATTGTCCATGCTGGTAAT+AGG	0.335567	4_1:+30018728	Msa0543560:CDS
AGTCATGATGCCTTCATGTT+GGG	0.345983	4_1:+30017363	Msa0543560:CDS
TATATTACCAGGTTAAAATA+AGG	0.351790	4_1:-30017512	None:intergenic
GATTGTCCATGCTGGTAATA+GGG	0.353853	4_1:+30018729	Msa0543560:CDS
GACGCCACGTGTCCCAAAAC+AGG	0.355530	4_1:-30019220	None:intergenic
CAACATCCATGATAACAATT+AGG	0.363009	4_1:-30017128	None:intergenic
GCAAAAGTGACCCATGTTTA+GGG	0.381325	4_1:+30019115	Msa0543560:three_prime_UTR
CATTGTTACCACTGCTTCCA+TGG	0.385326	4_1:+30018862	Msa0543560:CDS
ATCATATTTCCCTTATGTTA+GGG	0.389772	4_1:-30019156	None:intergenic
ATCAGGGTTGTGGTGGCTGT+TGG	0.394905	4_1:+30018707	Msa0543560:intron
CACCATCACTTTCTGTCCAT+TGG	0.397413	4_1:+30018794	Msa0543560:CDS
GATGCCTTCATGTTGGGGTT+GGG	0.408304	4_1:+30017369	Msa0543560:CDS
AAAGTACTGAGAGTTGTCTA+TGG	0.408478	4_1:-30017488	None:intergenic
AGCTGGTATTCTTGGCTTTG+AGG	0.413890	4_1:+30017152	Msa0543560:CDS
TTGTCTCCTAATTGTTATCA+TGG	0.414420	4_1:+30017122	Msa0543560:CDS
TTGAAAACACAAATATTTCT+GGG	0.422188	4_1:-30017067	None:intergenic
TGATGCCTTCATGTTGGGGT+TGG	0.426974	4_1:+30017368	Msa0543560:CDS
CGCAACTTGTTGAGAAGATA+AGG	0.431968	4_1:-30019188	None:intergenic
ATCACTTTCTGTCCATTGGT+GGG	0.474245	4_1:+30018798	Msa0543560:CDS
AAAACAGGTTAAGCATTTGA+AGG	0.491275	4_1:+30017314	Msa0543560:intron
CATCACTTTCTGTCCATTGG+TGG	0.493082	4_1:+30018797	Msa0543560:CDS
TGTGTTGTTGATCAGGGTTG+TGG	0.499842	4_1:+30018697	Msa0543560:intron
TAGGGGCTATGTCAAACAAC+AGG	0.503152	4_1:+30018747	Msa0543560:CDS
TACAAAATGGCTAGAGTAGG+AGG	0.513279	4_1:+30017090	Msa0543560:exon
AACATGAAGGCATCATGACT+TGG	0.534290	4_1:-30017360	None:intergenic
GTCATGATGCCTTCATGTTG+GGG	0.535583	4_1:+30017364	Msa0543560:CDS
GGCTGTTGGATTGTCCATGC+TGG	0.535782	4_1:+30018721	Msa0543560:CDS
TTCTCAACAGGAATTTGAGA+AGG	0.542952	4_1:+30017458	Msa0543560:CDS
CATATTTCCCTTATGTTAGG+GGG	0.548916	4_1:-30019154	None:intergenic
TCTTACAAAATACTAATCCA+TGG	0.550482	4_1:-30018879	None:intergenic
AGAGCATATTTCCCTAAACA+TGG	0.551374	4_1:-30019126	None:intergenic
AGGTTAAGCATTTGAAGGTG+TGG	0.557434	4_1:+30017319	Msa0543560:intron
CAATACAAAATGGCTAGAGT+AGG	0.563356	4_1:+30017087	Msa0543560:exon
AAGTCATGATGCCTTCATGT+TGG	0.571287	4_1:+30017362	Msa0543560:CDS
ATTGTCCATGCTGGTAATAG+GGG	0.576738	4_1:+30018730	Msa0543560:CDS
GTTATCATGGATGTTGCAGC+TGG	0.584347	4_1:+30017135	Msa0543560:CDS
GTTGTTGATCAGGGTTGTGG+TGG	0.588245	4_1:+30018700	Msa0543560:intron
AAGTACTGAGAGTTGTCTAT+GGG	0.588754	4_1:-30017487	None:intergenic
AAAACATGAAATCCCACCAA+TGG	0.590722	4_1:-30018810	None:intergenic
ATACTAATCCATGGAAGCAG+TGG	0.591196	4_1:-30018870	None:intergenic
TATGTCAAACAACAGGTCAA+AGG	0.592422	4_1:+30018754	Msa0543560:CDS
ACGCCACGTGTCCCAAAACA+GGG	0.593408	4_1:-30019219	None:intergenic
TGCACCCAACCCCAACATGA+AGG	0.603813	4_1:-30017373	None:intergenic
TACTGAGAGTTGTCTATGGG+AGG	0.604411	4_1:-30017484	None:intergenic
TCATATTTCCCTTATGTTAG+GGG	0.608027	4_1:-30019155	None:intergenic
AACAGGTCAAAGGATTCTTG+TGG	0.609881	4_1:+30018764	Msa0543560:CDS
GGCTGAAATAGCACAAAACA+AGG	0.619758	4_1:+30017173	Msa0543560:CDS
CATAGCCCCTATTACCAGCA+TGG	0.640867	4_1:-30018735	None:intergenic
AGTTCTAAGATTAGAAACAG+TGG	0.646953	4_1:-30017006	None:intergenic
GAGCATATTTCCCTAAACAT+GGG	0.650697	4_1:-30019125	None:intergenic
CACCAATGGACAGAAAGTGA+TGG	0.668068	4_1:-30018796	None:intergenic
CGCCACGTGTCCCAAAACAG+GGG	0.699563	4_1:-30019218	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAAAAAATAAAAAATAA+AGG	-	chr4_1:30018226-30018245	None:intergenic	0.0%
!!	ATAAAAAAAATAAAAAATAA+AGG	-	chr4_1:30018226-30018245	None:intergenic	0.0%
!!!	TTTTGAAATAATTAATAACA+AGG	+	chr4_1:30017251-30017270	Msa0543560:intron	10.0%
!!!	TTTTGAAATAATTAATAACA+AGG	+	chr4_1:30017251-30017270	Msa0543560:intron	10.0%
!!	TAAAATATATTCCAAAATGT+TGG	-	chr4_1:30017214-30017233	None:intergenic	15.0%
!!!	TTTTTTATTTTCAACAAAAC+AGG	+	chr4_1:30017299-30017318	Msa0543560:intron	15.0%
!!!	TCCAAATAAAATATTTTACA+GGG	-	chr4_1:30017659-30017678	None:intergenic	15.0%
!!!	ATCCAAATAAAATATTTTAC+AGG	-	chr4_1:30017660-30017679	None:intergenic	15.0%
!!	TTGCAATTAAGTAAAAAAAA+AGG	-	chr4_1:30017978-30017997	None:intergenic	15.0%
!!	CTAAAATGTTTGAATATAAT+CGG	+	chr4_1:30018162-30018181	Msa0543560:intron	15.0%
!!	TAAAATGTTTGAATATAATC+GGG	+	chr4_1:30018163-30018182	Msa0543560:intron	15.0%
!!	TTTAAATAAAGTGATACAAA+CGG	+	chr4_1:30018404-30018423	Msa0543560:intron	15.0%
!!!	AAATAGTACCTTTTTTTAAT+TGG	+	chr4_1:30018551-30018570	Msa0543560:intron	15.0%
!!!	AATAGTACCTTTTTTTAATT+GGG	+	chr4_1:30018552-30018571	Msa0543560:intron	15.0%
!!	ATATTTAGTGAATGATTATT+TGG	-	chr4_1:30018660-30018679	None:intergenic	15.0%
!!!	TTTTGCCTTTTTTTTAATAA+GGG	-	chr4_1:30019101-30019120	None:intergenic	15.0%
!!	TAAAATATATTCCAAAATGT+TGG	-	chr4_1:30017214-30017233	None:intergenic	15.0%
!!!	TTTTTTATTTTCAACAAAAC+AGG	+	chr4_1:30017299-30017318	Msa0543560:intron	15.0%
!!!	TCCAAATAAAATATTTTACA+GGG	-	chr4_1:30017659-30017678	None:intergenic	15.0%
!!!	ATCCAAATAAAATATTTTAC+AGG	-	chr4_1:30017660-30017679	None:intergenic	15.0%
!!	TTGCAATTAAGTAAAAAAAA+AGG	-	chr4_1:30017978-30017997	None:intergenic	15.0%
!!	CTAAAATGTTTGAATATAAT+CGG	+	chr4_1:30018162-30018181	Msa0543560:intron	15.0%
!!	TAAAATGTTTGAATATAATC+GGG	+	chr4_1:30018163-30018182	Msa0543560:intron	15.0%
!!	TTTAAATAAAGTGATACAAA+CGG	+	chr4_1:30018404-30018423	Msa0543560:intron	15.0%
!!!	AAATAGTACCTTTTTTTAAT+TGG	+	chr4_1:30018551-30018570	Msa0543560:intron	15.0%
!!!	AATAGTACCTTTTTTTAATT+GGG	+	chr4_1:30018552-30018571	Msa0543560:intron	15.0%
!!	ATATTTAGTGAATGATTATT+TGG	-	chr4_1:30018660-30018679	None:intergenic	15.0%
!!!	TTTTGCCTTTTTTTTAATAA+GGG	-	chr4_1:30019101-30019120	None:intergenic	15.0%
!!	TTGAAAACACAAATATTTCT+GGG	-	chr4_1:30017070-30017089	None:intergenic	20.0%
!!	ATTGAAAACACAAATATTTC+TGG	-	chr4_1:30017071-30017090	None:intergenic	20.0%
!!!	TTTGTGTTTTCAATACAAAA+TGG	+	chr4_1:30017077-30017096	Msa0543560:exon	20.0%
!!	TATATTACCAGGTTAAAATA+AGG	-	chr4_1:30017515-30017534	None:intergenic	20.0%
!!!	TCCCTGTAAAATATTTTATT+TGG	+	chr4_1:30017655-30017674	Msa0543560:intron	20.0%
!!	CAAATAATCTTCAAATTACA+AGG	-	chr4_1:30017688-30017707	None:intergenic	20.0%
!!	CTTGTAATTTGAAGATTATT+TGG	+	chr4_1:30017686-30017705	Msa0543560:intron	20.0%
!!	AAAATTAGCTCAAATTAACA+GGG	-	chr4_1:30017800-30017819	None:intergenic	20.0%
!!!	AATTTGAAGTTTTTTGGTTT+TGG	-	chr4_1:30017874-30017893	None:intergenic	20.0%
!!!	ATCCAAAAAGAAAATTTTAC+AGG	+	chr4_1:30017905-30017924	Msa0543560:intron	20.0%
!!!	TCCAAAAAGAAAATTTTACA+GGG	+	chr4_1:30017906-30017925	Msa0543560:intron	20.0%
!!	ACGTAAATTTGAAGAAAATT+GGG	-	chr4_1:30018060-30018079	None:intergenic	20.0%
!!	AACGTAAATTTGAAGAAAAT+TGG	-	chr4_1:30018061-30018080	None:intergenic	20.0%
!!	AAAATGTTTGAATATAATCG+GGG	+	chr4_1:30018164-30018183	Msa0543560:intron	20.0%
!!!	ATTTTAAAGAAAAGTGAAAG+TGG	+	chr4_1:30018244-30018263	Msa0543560:intron	20.0%
!!!	ATAGTACCTTTTTTTAATTG+GGG	+	chr4_1:30018553-30018572	Msa0543560:intron	20.0%
!!	TATTGGATCAAAATACATTT+AGG	-	chr4_1:30018600-30018619	None:intergenic	20.0%
!!	TATCAGTTACATTTAGTTAT+TGG	-	chr4_1:30018617-30018636	None:intergenic	20.0%
!!	TGATTTACTCATTATTATCT+TGG	+	chr4_1:30019026-30019045	Msa0543560:three_prime_UTR	20.0%
!!!	CTTTTGCCTTTTTTTTAATA+AGG	-	chr4_1:30019102-30019121	None:intergenic	20.0%
!!	TTGAAAACACAAATATTTCT+GGG	-	chr4_1:30017070-30017089	None:intergenic	20.0%
!!	ATTGAAAACACAAATATTTC+TGG	-	chr4_1:30017071-30017090	None:intergenic	20.0%
!!!	TTTGTGTTTTCAATACAAAA+TGG	+	chr4_1:30017077-30017096	Msa0543560:exon	20.0%
!!	TATATTACCAGGTTAAAATA+AGG	-	chr4_1:30017515-30017534	None:intergenic	20.0%
!!!	TCCCTGTAAAATATTTTATT+TGG	+	chr4_1:30017655-30017674	Msa0543560:intron	20.0%
!!	CAAATAATCTTCAAATTACA+AGG	-	chr4_1:30017688-30017707	None:intergenic	20.0%
!!	CTTGTAATTTGAAGATTATT+TGG	+	chr4_1:30017686-30017705	Msa0543560:intron	20.0%
!!	AAAATTAGCTCAAATTAACA+GGG	-	chr4_1:30017800-30017819	None:intergenic	20.0%
!!!	AATTTGAAGTTTTTTGGTTT+TGG	-	chr4_1:30017874-30017893	None:intergenic	20.0%
!!!	ATCCAAAAAGAAAATTTTAC+AGG	+	chr4_1:30017905-30017924	Msa0543560:intron	20.0%
!!!	TCCAAAAAGAAAATTTTACA+GGG	+	chr4_1:30017906-30017925	Msa0543560:intron	20.0%
!!	ACGTAAATTTGAAGAAAATT+GGG	-	chr4_1:30018060-30018079	None:intergenic	20.0%
!!	AACGTAAATTTGAAGAAAAT+TGG	-	chr4_1:30018061-30018080	None:intergenic	20.0%
!!	AAAATGTTTGAATATAATCG+GGG	+	chr4_1:30018164-30018183	Msa0543560:intron	20.0%
!!!	ATTTTAAAGAAAAGTGAAAG+TGG	+	chr4_1:30018244-30018263	Msa0543560:intron	20.0%
!!!	ATAGTACCTTTTTTTAATTG+GGG	+	chr4_1:30018553-30018572	Msa0543560:intron	20.0%
!!	TATTGGATCAAAATACATTT+AGG	-	chr4_1:30018600-30018619	None:intergenic	20.0%
!!	TATCAGTTACATTTAGTTAT+TGG	-	chr4_1:30018617-30018636	None:intergenic	20.0%
!!	TGATTTACTCATTATTATCT+TGG	+	chr4_1:30019026-30019045	Msa0543560:three_prime_UTR	20.0%
!!!	CTTTTGCCTTTTTTTTAATA+AGG	-	chr4_1:30019102-30019121	None:intergenic	20.0%
!!!	TAGTTTTGTTATTCCAAAAC+AGG	-	chr4_1:30017554-30017573	None:intergenic	25.0%
!	TTGGAATAACAAAACTAGTT+AGG	+	chr4_1:30017557-30017576	Msa0543560:intron	25.0%
!!	ATATTTTACAGGGAAAAAAC+CGG	-	chr4_1:30017649-30017668	None:intergenic	25.0%
!	AAATTAGCTCAAATTAACAG+GGG	-	chr4_1:30017799-30017818	None:intergenic	25.0%
!	CAAAATTAGCTCAAATTAAC+AGG	-	chr4_1:30017801-30017820	None:intergenic	25.0%
!!!	CTGTTAATTTGAGCTAATTT+TGG	+	chr4_1:30017799-30017818	Msa0543560:intron	25.0%
!	TGTAGAGTCAAAATTTATGA+AGG	+	chr4_1:30017847-30017866	Msa0543560:intron	25.0%
!!!	CCTTGTAATTTGAAGTTTTT+TGG	-	chr4_1:30017880-30017899	None:intergenic	25.0%
!	CCAAAAAACTTCAAATTACA+AGG	+	chr4_1:30017877-30017896	Msa0543560:intron	25.0%
!	AAAACTTCAAATTACAAGGA+CGG	+	chr4_1:30017881-30017900	Msa0543560:intron	25.0%
!!	CCAAAAAGAAAATTTTACAG+GGG	+	chr4_1:30017907-30017926	Msa0543560:intron	25.0%
!	AATTTGAAGAAAATTGGGAT+GGG	-	chr4_1:30018055-30018074	None:intergenic	25.0%
!	AAATTTGAAGAAAATTGGGA+TGG	-	chr4_1:30018056-30018075	None:intergenic	25.0%
!	AAATGTTTGAATATAATCGG+GGG	+	chr4_1:30018165-30018184	Msa0543560:intron	25.0%
!	ATTTCACAATCATGATACTT+AGG	+	chr4_1:30018331-30018350	Msa0543560:intron	25.0%
!	TTTCACAATCATGATACTTA+GGG	+	chr4_1:30018332-30018351	Msa0543560:intron	25.0%
!!!	TACAATTAGGCCATTTTAAT+TGG	+	chr4_1:30018362-30018381	Msa0543560:intron	25.0%
!!!	ACAATTAGGCCATTTTAATT+GGG	+	chr4_1:30018363-30018382	Msa0543560:intron	25.0%
!	TATGTTTCCGAATAAAACTA+TGG	-	chr4_1:30018504-30018523	None:intergenic	25.0%
!	TCTTACAAAATACTAATCCA+TGG	-	chr4_1:30018882-30018901	None:intergenic	25.0%
!!	CTTTTGTAATAATTGTGCTA+AGG	+	chr4_1:30018992-30019011	Msa0543560:three_prime_UTR	25.0%
!	TTGGTCCCTTATTAAAAAAA+AGG	+	chr4_1:30019093-30019112	Msa0543560:three_prime_UTR	25.0%
!	ATCATATTTCCCTTATGTTA+GGG	-	chr4_1:30019159-30019178	None:intergenic	25.0%
!!!	TAGTTTTGTTATTCCAAAAC+AGG	-	chr4_1:30017554-30017573	None:intergenic	25.0%
!	TTGGAATAACAAAACTAGTT+AGG	+	chr4_1:30017557-30017576	Msa0543560:intron	25.0%
!!	ATATTTTACAGGGAAAAAAC+CGG	-	chr4_1:30017649-30017668	None:intergenic	25.0%
!	AAATTAGCTCAAATTAACAG+GGG	-	chr4_1:30017799-30017818	None:intergenic	25.0%
!	CAAAATTAGCTCAAATTAAC+AGG	-	chr4_1:30017801-30017820	None:intergenic	25.0%
!!!	CTGTTAATTTGAGCTAATTT+TGG	+	chr4_1:30017799-30017818	Msa0543560:intron	25.0%
!	TGTAGAGTCAAAATTTATGA+AGG	+	chr4_1:30017847-30017866	Msa0543560:intron	25.0%
!!!	CCTTGTAATTTGAAGTTTTT+TGG	-	chr4_1:30017880-30017899	None:intergenic	25.0%
!	CCAAAAAACTTCAAATTACA+AGG	+	chr4_1:30017877-30017896	Msa0543560:intron	25.0%
!	AAAACTTCAAATTACAAGGA+CGG	+	chr4_1:30017881-30017900	Msa0543560:intron	25.0%
!!	CCAAAAAGAAAATTTTACAG+GGG	+	chr4_1:30017907-30017926	Msa0543560:intron	25.0%
!	AATTTGAAGAAAATTGGGAT+GGG	-	chr4_1:30018055-30018074	None:intergenic	25.0%
!	AAATTTGAAGAAAATTGGGA+TGG	-	chr4_1:30018056-30018075	None:intergenic	25.0%
!	AAATGTTTGAATATAATCGG+GGG	+	chr4_1:30018165-30018184	Msa0543560:intron	25.0%
!	ATTTCACAATCATGATACTT+AGG	+	chr4_1:30018331-30018350	Msa0543560:intron	25.0%
!	TTTCACAATCATGATACTTA+GGG	+	chr4_1:30018332-30018351	Msa0543560:intron	25.0%
!!!	TACAATTAGGCCATTTTAAT+TGG	+	chr4_1:30018362-30018381	Msa0543560:intron	25.0%
!!!	ACAATTAGGCCATTTTAATT+GGG	+	chr4_1:30018363-30018382	Msa0543560:intron	25.0%
!	TATGTTTCCGAATAAAACTA+TGG	-	chr4_1:30018504-30018523	None:intergenic	25.0%
!	TCTTACAAAATACTAATCCA+TGG	-	chr4_1:30018882-30018901	None:intergenic	25.0%
!!	CTTTTGTAATAATTGTGCTA+AGG	+	chr4_1:30018992-30019011	Msa0543560:three_prime_UTR	25.0%
!	TTGGTCCCTTATTAAAAAAA+AGG	+	chr4_1:30019093-30019112	Msa0543560:three_prime_UTR	25.0%
!	ATCATATTTCCCTTATGTTA+GGG	-	chr4_1:30019159-30019178	None:intergenic	25.0%
!!	AGTTCTAAGATTAGAAACAG+TGG	-	chr4_1:30017009-30017028	None:intergenic	30.0%
	TTGTCTCCTAATTGTTATCA+TGG	+	chr4_1:30017122-30017141	Msa0543560:CDS	30.0%
	CAACATCCATGATAACAATT+AGG	-	chr4_1:30017131-30017150	None:intergenic	30.0%
!	TATGCTTGAATCCAACATTT+TGG	+	chr4_1:30017200-30017219	Msa0543560:intron	30.0%
	AAAACAGGTTAAGCATTTGA+AGG	+	chr4_1:30017314-30017333	Msa0543560:intron	30.0%
!!!	CATGTTTTAGCCAATTTGTT+AGG	+	chr4_1:30017417-30017436	Msa0543560:CDS	30.0%
!!!	TACTTTGCCTTATTTTAACC+TGG	+	chr4_1:30017505-30017524	Msa0543560:CDS	30.0%
!	ATTTTGTCCCCTGTAATTTT+AGG	+	chr4_1:30017728-30017747	Msa0543560:intron	30.0%
	GAAACTTCCTAAAATTACAG+GGG	-	chr4_1:30017738-30017757	None:intergenic	30.0%
	CGAAACTTCCTAAAATTACA+GGG	-	chr4_1:30017739-30017758	None:intergenic	30.0%
!!	CCTGTAATTTTAGGAAGTTT+CGG	+	chr4_1:30017737-30017756	Msa0543560:intron	30.0%
	AATTAGCTCAAATTAACAGG+GGG	-	chr4_1:30017798-30017817	None:intergenic	30.0%
	ACTCTACAAAATCGATGATA+TGG	-	chr4_1:30017835-30017854	None:intergenic	30.0%
!	CCCCTGTAAAATTTTCTTTT+TGG	-	chr4_1:30017910-30017929	None:intergenic	30.0%
!	AAATTTTACAGGGGAAAAAC+TGG	+	chr4_1:30017916-30017935	Msa0543560:intron	30.0%
	TGGAAATGACGTATATTACA+CGG	+	chr4_1:30017936-30017955	Msa0543560:intron	30.0%
	GTATCACCATGATACAATTT+AGG	+	chr4_1:30018010-30018029	Msa0543560:intron	30.0%
	ATTTGAAGAAAATTGGGATG+GGG	-	chr4_1:30018054-30018073	None:intergenic	30.0%
!	TTAGGGTCAAAAGTACAATT+AGG	+	chr4_1:30018349-30018368	Msa0543560:intron	30.0%
!!!	CAATTAGGCCATTTTAATTG+GGG	+	chr4_1:30018364-30018383	Msa0543560:intron	30.0%
!!!	CTACGTACCATAGTTTTATT+CGG	+	chr4_1:30018494-30018513	Msa0543560:intron	30.0%
	TGAACTCCCCAATTAAAAAA+AGG	-	chr4_1:30018562-30018581	None:intergenic	30.0%
	GATCAACAACACAATCAAAA+GGG	-	chr4_1:30018690-30018709	None:intergenic	30.0%
	TGATCAACAACACAATCAAA+AGG	-	chr4_1:30018691-30018710	None:intergenic	30.0%
!!	TTTTGATTGTGTTGTTGATC+AGG	+	chr4_1:30018690-30018709	Msa0543560:intron	30.0%
!	TTTGATTGTGTTGTTGATCA+GGG	+	chr4_1:30018691-30018710	Msa0543560:intron	30.0%
!!!	GTTCATGTTTTTAGTGCTTT+TGG	+	chr4_1:30018924-30018943	Msa0543560:three_prime_UTR	30.0%
!!!	GCAACATTTTGAAACTTATG+GGG	-	chr4_1:30019069-30019088	None:intergenic	30.0%
!!!	CGCAACATTTTGAAACTTAT+GGG	-	chr4_1:30019070-30019089	None:intergenic	30.0%
!!!	TCGCAACATTTTGAAACTTA+TGG	-	chr4_1:30019071-30019090	None:intergenic	30.0%
!	GTTTCAAAATGTTGCGATTT+TGG	+	chr4_1:30019074-30019093	Msa0543560:three_prime_UTR	30.0%
	TCATATTTCCCTTATGTTAG+GGG	-	chr4_1:30019158-30019177	None:intergenic	30.0%
	GATCATATTTCCCTTATGTT+AGG	-	chr4_1:30019160-30019179	None:intergenic	30.0%
!!	AGTTCTAAGATTAGAAACAG+TGG	-	chr4_1:30017009-30017028	None:intergenic	30.0%
	TTGTCTCCTAATTGTTATCA+TGG	+	chr4_1:30017122-30017141	Msa0543560:CDS	30.0%
	CAACATCCATGATAACAATT+AGG	-	chr4_1:30017131-30017150	None:intergenic	30.0%
!	TATGCTTGAATCCAACATTT+TGG	+	chr4_1:30017200-30017219	Msa0543560:intron	30.0%
	AAAACAGGTTAAGCATTTGA+AGG	+	chr4_1:30017314-30017333	Msa0543560:intron	30.0%
!!!	CATGTTTTAGCCAATTTGTT+AGG	+	chr4_1:30017417-30017436	Msa0543560:CDS	30.0%
!!!	TACTTTGCCTTATTTTAACC+TGG	+	chr4_1:30017505-30017524	Msa0543560:CDS	30.0%
!	ATTTTGTCCCCTGTAATTTT+AGG	+	chr4_1:30017728-30017747	Msa0543560:intron	30.0%
	GAAACTTCCTAAAATTACAG+GGG	-	chr4_1:30017738-30017757	None:intergenic	30.0%
	CGAAACTTCCTAAAATTACA+GGG	-	chr4_1:30017739-30017758	None:intergenic	30.0%
!!	CCTGTAATTTTAGGAAGTTT+CGG	+	chr4_1:30017737-30017756	Msa0543560:intron	30.0%
	AATTAGCTCAAATTAACAGG+GGG	-	chr4_1:30017798-30017817	None:intergenic	30.0%
	ACTCTACAAAATCGATGATA+TGG	-	chr4_1:30017835-30017854	None:intergenic	30.0%
!	CCCCTGTAAAATTTTCTTTT+TGG	-	chr4_1:30017910-30017929	None:intergenic	30.0%
!	AAATTTTACAGGGGAAAAAC+TGG	+	chr4_1:30017916-30017935	Msa0543560:intron	30.0%
	TGGAAATGACGTATATTACA+CGG	+	chr4_1:30017936-30017955	Msa0543560:intron	30.0%
	GTATCACCATGATACAATTT+AGG	+	chr4_1:30018010-30018029	Msa0543560:intron	30.0%
	ATTTGAAGAAAATTGGGATG+GGG	-	chr4_1:30018054-30018073	None:intergenic	30.0%
!	TTAGGGTCAAAAGTACAATT+AGG	+	chr4_1:30018349-30018368	Msa0543560:intron	30.0%
!!!	CAATTAGGCCATTTTAATTG+GGG	+	chr4_1:30018364-30018383	Msa0543560:intron	30.0%
!!!	CTACGTACCATAGTTTTATT+CGG	+	chr4_1:30018494-30018513	Msa0543560:intron	30.0%
	TGAACTCCCCAATTAAAAAA+AGG	-	chr4_1:30018562-30018581	None:intergenic	30.0%
	GATCAACAACACAATCAAAA+GGG	-	chr4_1:30018690-30018709	None:intergenic	30.0%
	TGATCAACAACACAATCAAA+AGG	-	chr4_1:30018691-30018710	None:intergenic	30.0%
!!	TTTTGATTGTGTTGTTGATC+AGG	+	chr4_1:30018690-30018709	Msa0543560:intron	30.0%
!	TTTGATTGTGTTGTTGATCA+GGG	+	chr4_1:30018691-30018710	Msa0543560:intron	30.0%
!!!	GTTCATGTTTTTAGTGCTTT+TGG	+	chr4_1:30018924-30018943	Msa0543560:three_prime_UTR	30.0%
!!!	GCAACATTTTGAAACTTATG+GGG	-	chr4_1:30019069-30019088	None:intergenic	30.0%
!!!	CGCAACATTTTGAAACTTAT+GGG	-	chr4_1:30019070-30019089	None:intergenic	30.0%
!!!	TCGCAACATTTTGAAACTTA+TGG	-	chr4_1:30019071-30019090	None:intergenic	30.0%
!	GTTTCAAAATGTTGCGATTT+TGG	+	chr4_1:30019074-30019093	Msa0543560:three_prime_UTR	30.0%
	TCATATTTCCCTTATGTTAG+GGG	-	chr4_1:30019158-30019177	None:intergenic	30.0%
	GATCATATTTCCCTTATGTT+AGG	-	chr4_1:30019160-30019179	None:intergenic	30.0%
!	GATTTTCTTTCTGTTCTAGC+TGG	-	chr4_1:30017048-30017067	None:intergenic	35.0%
	CAATACAAAATGGCTAGAGT+AGG	+	chr4_1:30017087-30017106	Msa0543560:exon	35.0%
!!!	GTTTTAGCCAATTTGTTAGG+TGG	+	chr4_1:30017420-30017439	Msa0543560:CDS	35.0%
	ATTGCAACCACCTAACAAAT+TGG	-	chr4_1:30017430-30017449	None:intergenic	35.0%
	CAATTGTGTTTGTTCTCAAC+AGG	+	chr4_1:30017446-30017465	Msa0543560:CDS	35.0%
	TTCTCAACAGGAATTTGAGA+AGG	+	chr4_1:30017458-30017477	Msa0543560:CDS	35.0%
!!	AAGTACTGAGAGTTGTCTAT+GGG	-	chr4_1:30017490-30017509	None:intergenic	35.0%
!!	AAAGTACTGAGAGTTGTCTA+TGG	-	chr4_1:30017491-30017510	None:intergenic	35.0%
!	TTGTTATTCCAAAACAGGAC+AGG	-	chr4_1:30017549-30017568	None:intergenic	35.0%
!	GTGTTTTACCCCTGTAATAA+AGG	+	chr4_1:30017617-30017636	Msa0543560:intron	35.0%
!	GGGGACAAAATTTTTCATGA+AGG	-	chr4_1:30017719-30017738	None:intergenic	35.0%
	CCGAAACTTCCTAAAATTAC+AGG	-	chr4_1:30017740-30017759	None:intergenic	35.0%
!	CGAAATTTGCTCAAATTGCA+GGG	-	chr4_1:30017770-30017789	None:intergenic	35.0%
	CCTGCAATTTGAGCAAATTT+CGG	+	chr4_1:30017768-30017787	Msa0543560:intron	35.0%
	ACAAAATCGATGATATGGCA+GGG	-	chr4_1:30017830-30017849	None:intergenic	35.0%
	TACAAAATCGATGATATGGC+AGG	-	chr4_1:30017831-30017850	None:intergenic	35.0%
	GGAAATGACGTATATTACAC+GGG	+	chr4_1:30017937-30017956	Msa0543560:intron	35.0%
	GAAATGACGTATATTACACG+GGG	+	chr4_1:30017938-30017957	Msa0543560:intron	35.0%
	TGAAAGTGGCTATGAGATTT+GGG	+	chr4_1:30018258-30018277	Msa0543560:intron	35.0%
!	TGTCACTTCAGCGTAAAATT+TGG	+	chr4_1:30018299-30018318	Msa0543560:intron	35.0%
	TCGATTCACCCCAATTAAAA+TGG	-	chr4_1:30018375-30018394	None:intergenic	35.0%
	TATGTCAAACAACAGGTCAA+AGG	+	chr4_1:30018754-30018773	Msa0543560:CDS	35.0%
	AAAACATGAAATCCCACCAA+TGG	-	chr4_1:30018813-30018832	None:intergenic	35.0%
!!	GGGATTTCATGTTTTGTTCA+TGG	+	chr4_1:30018818-30018837	Msa0543560:CDS	35.0%
	GAGCATATTTCCCTAAACAT+GGG	-	chr4_1:30019128-30019147	None:intergenic	35.0%
	AGAGCATATTTCCCTAAACA+TGG	-	chr4_1:30019129-30019148	None:intergenic	35.0%
	CATATTTCCCTTATGTTAGG+GGG	-	chr4_1:30019157-30019176	None:intergenic	35.0%
	TTCTCAACAAGTTGCGATTA+TGG	+	chr4_1:30019195-30019214	Msa0543560:three_prime_UTR	35.0%
!	GATTTTCTTTCTGTTCTAGC+TGG	-	chr4_1:30017048-30017067	None:intergenic	35.0%
	CAATACAAAATGGCTAGAGT+AGG	+	chr4_1:30017087-30017106	Msa0543560:exon	35.0%
!!!	GTTTTAGCCAATTTGTTAGG+TGG	+	chr4_1:30017420-30017439	Msa0543560:CDS	35.0%
	ATTGCAACCACCTAACAAAT+TGG	-	chr4_1:30017430-30017449	None:intergenic	35.0%
	CAATTGTGTTTGTTCTCAAC+AGG	+	chr4_1:30017446-30017465	Msa0543560:CDS	35.0%
	TTCTCAACAGGAATTTGAGA+AGG	+	chr4_1:30017458-30017477	Msa0543560:CDS	35.0%
!!	AAGTACTGAGAGTTGTCTAT+GGG	-	chr4_1:30017490-30017509	None:intergenic	35.0%
!!	AAAGTACTGAGAGTTGTCTA+TGG	-	chr4_1:30017491-30017510	None:intergenic	35.0%
!	TTGTTATTCCAAAACAGGAC+AGG	-	chr4_1:30017549-30017568	None:intergenic	35.0%
!	GTGTTTTACCCCTGTAATAA+AGG	+	chr4_1:30017617-30017636	Msa0543560:intron	35.0%
!	GGGGACAAAATTTTTCATGA+AGG	-	chr4_1:30017719-30017738	None:intergenic	35.0%
	CCGAAACTTCCTAAAATTAC+AGG	-	chr4_1:30017740-30017759	None:intergenic	35.0%
!	CGAAATTTGCTCAAATTGCA+GGG	-	chr4_1:30017770-30017789	None:intergenic	35.0%
	CCTGCAATTTGAGCAAATTT+CGG	+	chr4_1:30017768-30017787	Msa0543560:intron	35.0%
	ACAAAATCGATGATATGGCA+GGG	-	chr4_1:30017830-30017849	None:intergenic	35.0%
	TACAAAATCGATGATATGGC+AGG	-	chr4_1:30017831-30017850	None:intergenic	35.0%
	GGAAATGACGTATATTACAC+GGG	+	chr4_1:30017937-30017956	Msa0543560:intron	35.0%
	GAAATGACGTATATTACACG+GGG	+	chr4_1:30017938-30017957	Msa0543560:intron	35.0%
	TGAAAGTGGCTATGAGATTT+GGG	+	chr4_1:30018258-30018277	Msa0543560:intron	35.0%
!	TGTCACTTCAGCGTAAAATT+TGG	+	chr4_1:30018299-30018318	Msa0543560:intron	35.0%
	TCGATTCACCCCAATTAAAA+TGG	-	chr4_1:30018375-30018394	None:intergenic	35.0%
	TATGTCAAACAACAGGTCAA+AGG	+	chr4_1:30018754-30018773	Msa0543560:CDS	35.0%
	AAAACATGAAATCCCACCAA+TGG	-	chr4_1:30018813-30018832	None:intergenic	35.0%
!!	GGGATTTCATGTTTTGTTCA+TGG	+	chr4_1:30018818-30018837	Msa0543560:CDS	35.0%
	GAGCATATTTCCCTAAACAT+GGG	-	chr4_1:30019128-30019147	None:intergenic	35.0%
	AGAGCATATTTCCCTAAACA+TGG	-	chr4_1:30019129-30019148	None:intergenic	35.0%
	CATATTTCCCTTATGTTAGG+GGG	-	chr4_1:30019157-30019176	None:intergenic	35.0%
	TTCTCAACAAGTTGCGATTA+TGG	+	chr4_1:30019195-30019214	Msa0543560:three_prime_UTR	35.0%
	TACAAAATGGCTAGAGTAGG+AGG	+	chr4_1:30017090-30017109	Msa0543560:exon	40.0%
	GGCTGAAATAGCACAAAACA+AGG	+	chr4_1:30017173-30017192	Msa0543560:CDS	40.0%
	AGGTTAAGCATTTGAAGGTG+TGG	+	chr4_1:30017319-30017338	Msa0543560:intron	40.0%
!!	AACATGAAGGCATCATGACT+TGG	-	chr4_1:30017363-30017382	None:intergenic	40.0%
	AAGTCATGATGCCTTCATGT+TGG	+	chr4_1:30017362-30017381	Msa0543560:CDS	40.0%
	AGTCATGATGCCTTCATGTT+GGG	+	chr4_1:30017363-30017382	Msa0543560:CDS	40.0%
	AGAGGCAGAGATATATTACC+AGG	-	chr4_1:30017526-30017545	None:intergenic	40.0%
	GGAACTGACCTTTATTACAG+GGG	-	chr4_1:30017628-30017647	None:intergenic	40.0%
	CGGAACTGACCTTTATTACA+GGG	-	chr4_1:30017629-30017648	None:intergenic	40.0%
	CCTGTAATAAAGGTCAGTTC+CGG	+	chr4_1:30017627-30017646	Msa0543560:intron	40.0%
!	AATTTGCTCAAATTGCAGGG+AGG	-	chr4_1:30017767-30017786	None:intergenic	40.0%
!	CCGAAATTTGCTCAAATTGC+AGG	-	chr4_1:30017771-30017790	None:intergenic	40.0%
	CAAAATCGATGATATGGCAG+GGG	-	chr4_1:30017829-30017848	None:intergenic	40.0%
	AAGGGGCCTAAATTGTATCA+TGG	-	chr4_1:30018019-30018038	None:intergenic	40.0%
!	ATGGGGACTAGAAAGCATAA+GGG	-	chr4_1:30018037-30018056	None:intergenic	40.0%
	CCATATTGACCAAGAGAGTT+GGG	-	chr4_1:30018111-30018130	None:intergenic	40.0%
	GTGAAAGTGGCTATGAGATT+TGG	+	chr4_1:30018257-30018276	Msa0543560:intron	40.0%
	CACTTCAGCGTAAAATTTGG+AGG	+	chr4_1:30018302-30018321	Msa0543560:intron	40.0%
	ACTATGGTACGTAGTCTAAC+AGG	-	chr4_1:30018488-30018507	None:intergenic	40.0%
	GATTGTCCATGCTGGTAATA+GGG	+	chr4_1:30018729-30018748	Msa0543560:CDS	40.0%
	ATTGTCCATGCTGGTAATAG+GGG	+	chr4_1:30018730-30018749	Msa0543560:CDS	40.0%
	AACAGGTCAAAGGATTCTTG+TGG	+	chr4_1:30018764-30018783	Msa0543560:CDS	40.0%
	ATCACTTTCTGTCCATTGGT+GGG	+	chr4_1:30018798-30018817	Msa0543560:CDS	40.0%
	ATACTAATCCATGGAAGCAG+TGG	-	chr4_1:30018873-30018892	None:intergenic	40.0%
	GCAAAAGTGACCCATGTTTA+GGG	+	chr4_1:30019115-30019134	Msa0543560:three_prime_UTR	40.0%
!	TCTTTTGACCCCCTAACATA+AGG	+	chr4_1:30019146-30019165	Msa0543560:three_prime_UTR	40.0%
!	CTTTTGACCCCCTAACATAA+GGG	+	chr4_1:30019147-30019166	Msa0543560:three_prime_UTR	40.0%
!!	CGCAACTTGTTGAGAAGATA+AGG	-	chr4_1:30019191-30019210	None:intergenic	40.0%
	TACAAAATGGCTAGAGTAGG+AGG	+	chr4_1:30017090-30017109	Msa0543560:exon	40.0%
	GGCTGAAATAGCACAAAACA+AGG	+	chr4_1:30017173-30017192	Msa0543560:CDS	40.0%
	AGGTTAAGCATTTGAAGGTG+TGG	+	chr4_1:30017319-30017338	Msa0543560:intron	40.0%
!!	AACATGAAGGCATCATGACT+TGG	-	chr4_1:30017363-30017382	None:intergenic	40.0%
	AAGTCATGATGCCTTCATGT+TGG	+	chr4_1:30017362-30017381	Msa0543560:CDS	40.0%
	AGTCATGATGCCTTCATGTT+GGG	+	chr4_1:30017363-30017382	Msa0543560:CDS	40.0%
	AGAGGCAGAGATATATTACC+AGG	-	chr4_1:30017526-30017545	None:intergenic	40.0%
	GGAACTGACCTTTATTACAG+GGG	-	chr4_1:30017628-30017647	None:intergenic	40.0%
	CGGAACTGACCTTTATTACA+GGG	-	chr4_1:30017629-30017648	None:intergenic	40.0%
	CCTGTAATAAAGGTCAGTTC+CGG	+	chr4_1:30017627-30017646	Msa0543560:intron	40.0%
!	AATTTGCTCAAATTGCAGGG+AGG	-	chr4_1:30017767-30017786	None:intergenic	40.0%
!	CCGAAATTTGCTCAAATTGC+AGG	-	chr4_1:30017771-30017790	None:intergenic	40.0%
	CAAAATCGATGATATGGCAG+GGG	-	chr4_1:30017829-30017848	None:intergenic	40.0%
	AAGGGGCCTAAATTGTATCA+TGG	-	chr4_1:30018019-30018038	None:intergenic	40.0%
!	ATGGGGACTAGAAAGCATAA+GGG	-	chr4_1:30018037-30018056	None:intergenic	40.0%
	CCATATTGACCAAGAGAGTT+GGG	-	chr4_1:30018111-30018130	None:intergenic	40.0%
	GTGAAAGTGGCTATGAGATT+TGG	+	chr4_1:30018257-30018276	Msa0543560:intron	40.0%
	CACTTCAGCGTAAAATTTGG+AGG	+	chr4_1:30018302-30018321	Msa0543560:intron	40.0%
	ACTATGGTACGTAGTCTAAC+AGG	-	chr4_1:30018488-30018507	None:intergenic	40.0%
	GATTGTCCATGCTGGTAATA+GGG	+	chr4_1:30018729-30018748	Msa0543560:CDS	40.0%
	ATTGTCCATGCTGGTAATAG+GGG	+	chr4_1:30018730-30018749	Msa0543560:CDS	40.0%
	AACAGGTCAAAGGATTCTTG+TGG	+	chr4_1:30018764-30018783	Msa0543560:CDS	40.0%
	ATCACTTTCTGTCCATTGGT+GGG	+	chr4_1:30018798-30018817	Msa0543560:CDS	40.0%
	ATACTAATCCATGGAAGCAG+TGG	-	chr4_1:30018873-30018892	None:intergenic	40.0%
	GCAAAAGTGACCCATGTTTA+GGG	+	chr4_1:30019115-30019134	Msa0543560:three_prime_UTR	40.0%
!	TCTTTTGACCCCCTAACATA+AGG	+	chr4_1:30019146-30019165	Msa0543560:three_prime_UTR	40.0%
!	CTTTTGACCCCCTAACATAA+GGG	+	chr4_1:30019147-30019166	Msa0543560:three_prime_UTR	40.0%
!!	CGCAACTTGTTGAGAAGATA+AGG	-	chr4_1:30019191-30019210	None:intergenic	40.0%
	GTTATCATGGATGTTGCAGC+TGG	+	chr4_1:30017135-30017154	Msa0543560:CDS	45.0%
	GATGTTGCAGCTGGTATTCT+TGG	+	chr4_1:30017144-30017163	Msa0543560:CDS	45.0%
!!	AGCTGGTATTCTTGGCTTTG+AGG	+	chr4_1:30017152-30017171	Msa0543560:CDS	45.0%
	GTCATGATGCCTTCATGTTG+GGG	+	chr4_1:30017364-30017383	Msa0543560:CDS	45.0%
	TACTGAGAGTTGTCTATGGG+AGG	-	chr4_1:30017487-30017506	None:intergenic	45.0%
	ATTCCAAAACAGGACAGGAG+AGG	-	chr4_1:30017544-30017563	None:intergenic	45.0%
	CCGGAACTGACCTTTATTAC+AGG	-	chr4_1:30017630-30017649	None:intergenic	45.0%
!	TGGGGACTAGAAAGCATAAG+GGG	-	chr4_1:30018036-30018055	None:intergenic	45.0%
!	GATGGGGACTAGAAAGCATA+AGG	-	chr4_1:30018038-30018057	None:intergenic	45.0%
	CCCAACTCTCTTGGTCAATA+TGG	+	chr4_1:30018108-30018127	Msa0543560:intron	45.0%
	GCCATATTGACCAAGAGAGT+TGG	-	chr4_1:30018112-30018131	None:intergenic	45.0%
!	TGTGTTGTTGATCAGGGTTG+TGG	+	chr4_1:30018697-30018716	Msa0543560:intron	45.0%
	GGATTGTCCATGCTGGTAAT+AGG	+	chr4_1:30018728-30018747	Msa0543560:CDS	45.0%
	TAGGGGCTATGTCAAACAAC+AGG	+	chr4_1:30018747-30018766	Msa0543560:CDS	45.0%
	CACCATCACTTTCTGTCCAT+TGG	+	chr4_1:30018794-30018813	Msa0543560:CDS	45.0%
	CACCAATGGACAGAAAGTGA+TGG	-	chr4_1:30018799-30018818	None:intergenic	45.0%
	CATCACTTTCTGTCCATTGG+TGG	+	chr4_1:30018797-30018816	Msa0543560:CDS	45.0%
	CATTGTTACCACTGCTTCCA+TGG	+	chr4_1:30018862-30018881	Msa0543560:CDS	45.0%
	GGCAAAAGTGACCCATGTTT+AGG	+	chr4_1:30019114-30019133	Msa0543560:three_prime_UTR	45.0%
	GTTATCATGGATGTTGCAGC+TGG	+	chr4_1:30017135-30017154	Msa0543560:CDS	45.0%
	GATGTTGCAGCTGGTATTCT+TGG	+	chr4_1:30017144-30017163	Msa0543560:CDS	45.0%
!!	AGCTGGTATTCTTGGCTTTG+AGG	+	chr4_1:30017152-30017171	Msa0543560:CDS	45.0%
	GTCATGATGCCTTCATGTTG+GGG	+	chr4_1:30017364-30017383	Msa0543560:CDS	45.0%
	TACTGAGAGTTGTCTATGGG+AGG	-	chr4_1:30017487-30017506	None:intergenic	45.0%
	ATTCCAAAACAGGACAGGAG+AGG	-	chr4_1:30017544-30017563	None:intergenic	45.0%
	CCGGAACTGACCTTTATTAC+AGG	-	chr4_1:30017630-30017649	None:intergenic	45.0%
!	TGGGGACTAGAAAGCATAAG+GGG	-	chr4_1:30018036-30018055	None:intergenic	45.0%
!	GATGGGGACTAGAAAGCATA+AGG	-	chr4_1:30018038-30018057	None:intergenic	45.0%
	CCCAACTCTCTTGGTCAATA+TGG	+	chr4_1:30018108-30018127	Msa0543560:intron	45.0%
	GCCATATTGACCAAGAGAGT+TGG	-	chr4_1:30018112-30018131	None:intergenic	45.0%
!	TGTGTTGTTGATCAGGGTTG+TGG	+	chr4_1:30018697-30018716	Msa0543560:intron	45.0%
	GGATTGTCCATGCTGGTAAT+AGG	+	chr4_1:30018728-30018747	Msa0543560:CDS	45.0%
	TAGGGGCTATGTCAAACAAC+AGG	+	chr4_1:30018747-30018766	Msa0543560:CDS	45.0%
	CACCATCACTTTCTGTCCAT+TGG	+	chr4_1:30018794-30018813	Msa0543560:CDS	45.0%
	CACCAATGGACAGAAAGTGA+TGG	-	chr4_1:30018799-30018818	None:intergenic	45.0%
	CATCACTTTCTGTCCATTGG+TGG	+	chr4_1:30018797-30018816	Msa0543560:CDS	45.0%
	CATTGTTACCACTGCTTCCA+TGG	+	chr4_1:30018862-30018881	Msa0543560:CDS	45.0%
	GGCAAAAGTGACCCATGTTT+AGG	+	chr4_1:30019114-30019133	Msa0543560:three_prime_UTR	45.0%
	TGATGCCTTCATGTTGGGGT+TGG	+	chr4_1:30017368-30017387	Msa0543560:CDS	50.0%
	GATGCCTTCATGTTGGGGTT+GGG	+	chr4_1:30017369-30017388	Msa0543560:CDS	50.0%
!	TTGGGTGCAGCAGTGCTATT+GGG	+	chr4_1:30017387-30017406	Msa0543560:CDS	50.0%
	ACCAAGAGAGTTGGGAGTCA+CGG	-	chr4_1:30018103-30018122	None:intergenic	50.0%
	GTTGTTGATCAGGGTTGTGG+TGG	+	chr4_1:30018700-30018719	Msa0543560:intron	50.0%
	CATAGCCCCTATTACCAGCA+TGG	-	chr4_1:30018738-30018757	None:intergenic	50.0%
!	TGCGATTATGGCCCCTGTTT+TGG	+	chr4_1:30019207-30019226	Msa0543560:three_prime_UTR	50.0%
!	GCGATTATGGCCCCTGTTTT+GGG	+	chr4_1:30019208-30019227	Msa0543560:three_prime_UTR	50.0%
	TGATGCCTTCATGTTGGGGT+TGG	+	chr4_1:30017368-30017387	Msa0543560:CDS	50.0%
	GATGCCTTCATGTTGGGGTT+GGG	+	chr4_1:30017369-30017388	Msa0543560:CDS	50.0%
!	TTGGGTGCAGCAGTGCTATT+GGG	+	chr4_1:30017387-30017406	Msa0543560:CDS	50.0%
	ACCAAGAGAGTTGGGAGTCA+CGG	-	chr4_1:30018103-30018122	None:intergenic	50.0%
	GTTGTTGATCAGGGTTGTGG+TGG	+	chr4_1:30018700-30018719	Msa0543560:intron	50.0%
	CATAGCCCCTATTACCAGCA+TGG	-	chr4_1:30018738-30018757	None:intergenic	50.0%
!	TGCGATTATGGCCCCTGTTT+TGG	+	chr4_1:30019207-30019226	Msa0543560:three_prime_UTR	50.0%
!	GCGATTATGGCCCCTGTTTT+GGG	+	chr4_1:30019208-30019227	Msa0543560:three_prime_UTR	50.0%
	TGCACCCAACCCCAACATGA+AGG	-	chr4_1:30017376-30017395	None:intergenic	55.0%
	GTTGGGTGCAGCAGTGCTAT+TGG	+	chr4_1:30017386-30017405	Msa0543560:CDS	55.0%
!	CTGCCTCTCCTGTCCTGTTT+TGG	+	chr4_1:30017538-30017557	Msa0543560:intron	55.0%
	ATCAGGGTTGTGGTGGCTGT+TGG	+	chr4_1:30018707-30018726	Msa0543560:intron	55.0%
	GGCTGTTGGATTGTCCATGC+TGG	+	chr4_1:30018721-30018740	Msa0543560:CDS	55.0%
	TGCACCCAACCCCAACATGA+AGG	-	chr4_1:30017376-30017395	None:intergenic	55.0%
	GTTGGGTGCAGCAGTGCTAT+TGG	+	chr4_1:30017386-30017405	Msa0543560:CDS	55.0%
!	CTGCCTCTCCTGTCCTGTTT+TGG	+	chr4_1:30017538-30017557	Msa0543560:intron	55.0%
	ATCAGGGTTGTGGTGGCTGT+TGG	+	chr4_1:30018707-30018726	Msa0543560:intron	55.0%
	GGCTGTTGGATTGTCCATGC+TGG	+	chr4_1:30018721-30018740	Msa0543560:CDS	55.0%
	GCCGTGACTCCCAACTCTCT+TGG	+	chr4_1:30018099-30018118	Msa0543560:intron	60.0%
	GCCGTGACTCCCAACTCTCT+TGG	+	chr4_1:30018099-30018118	Msa0543560:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	30017005	30019237	30017005	ID=Msa0543560;Name=Msa0543560
chr4_1	mRNA	30017005	30019237	30017005	ID=Msa0543560-mRNA-1;Parent=Msa0543560;Name=Msa0543560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=91\|1\|1\|1\|1\|1\|3\|348\|160
chr4_1	exon	30017005	30017194	30017005	ID=Msa0543560-mRNA-1:exon:7956;Parent=Msa0543560-mRNA-1
chr4_1	exon	30017321	30017526	30017321	ID=Msa0543560-mRNA-1:exon:7957;Parent=Msa0543560-mRNA-1
chr4_1	exon	30018712	30019237	30018712	ID=Msa0543560-mRNA-1:exon:7958;Parent=Msa0543560-mRNA-1
chr4_1	five_prime_UTR	30017005	30017095	30017005	ID=Msa0543560-mRNA-1:five_prime_utr;Parent=Msa0543560-mRNA-1
chr4_1	CDS	30017096	30017194	30017096	ID=Msa0543560-mRNA-1:cds;Parent=Msa0543560-mRNA-1
chr4_1	CDS	30017321	30017526	30017321	ID=Msa0543560-mRNA-1:cds;Parent=Msa0543560-mRNA-1
chr4_1	CDS	30018712	30018889	30018712	ID=Msa0543560-mRNA-1:cds;Parent=Msa0543560-mRNA-1
chr4_1	three_prime_UTR	30018890	30019237	30018890	ID=Msa0543560-mRNA-1:three_prime_utr;Parent=Msa0543560-mRNA-1

Gene Sequence

>Msa0543560

ATGGCTAGAGTAGGAGGCATTGTTGTTTGTCTCCTAATTGTTATCATGGATGTTGCAGCTGGTATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGGTTAAGCATTTGAAGGTGTGGATATTTGAGTGTAGAGAACCAAGTCATGATGCCTTCATGTTGGGGTTGGGTGCAGCAGTGCTATTGGGACTATCACATGTTTTAGCCAATTTGTTAGGTGGTTGCAATTGTGTTTGTTCTCAACAGGAATTTGAGAAGGCTTCCTCCCATAGACAACTCTCAGTACTTTGCCTTATTTTAACCTGGGTTGTGGTGGCTGTTGGATTGTCCATGCTGGTAATAGGGGCTATGTCAAACAACAGGTCAAAGGATTCTTGTGGTTTCTCACACCATCACTTTCTGTCCATTGGTGGGATTTCATGTTTTGTTCATGGTCTCTTCTCTGTTATATATTACATTGTTACCACTGCTTCCATGGATTAG

Protein sequence

>Msa0543560

MARVGGIVVCLLIVIMDVAAGILGFEAEIAQNKVKHLKVWIFECREPSHDAFMLGLGAAVLLGLSHVLANLLGGCNCVCSQQEFEKASSHRQLSVLCLILTWVVVAVGLSMLVIGAMSNNRSKDSCGFSHHHFLSIGGISCFVHGLFSVIYYIVTTASMD*