AlfalfaGEDB | Msa0120730

M. sativa cultivar zhongmu-4 / Msa0120730

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009909 GO:0010016 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045926 GO:0046620 GO:0046621 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048439 GO:0048441 GO:0048442 GO:0048444 GO:0048446 GO:0048464 GO:0048465 GO:0048498 GO:0048519 GO:0048559 GO:0048560 GO:0048580 GO:0048608 GO:0048638 GO:0048640 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090428 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090707 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF13837.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120730	XP_013468051.1	96.132	517	6	3	1	509	1	511	0.0	1028

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120730	sp\|Q9LZS0\|PTL_ARATH	57.929	309	100	9	129	413	119	421	4.27e-100	316

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120730	A0A072VKX9	96.132	517	6	3	1	509	1	511	0.0	1028

TFs/TRs:

Gene ID	Type	Classification
Msa0120730	TF	Trihelix

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017510	Msa0120730	0.830624	2.644713e-55	-8.615850e-47
Msa0072370	Msa0120730	0.882931	6.881857e-71	-8.615850e-47
Msa0094850	Msa0120730	0.805759	1.142932e-49	-8.615850e-47
Msa0110970	Msa0120730	0.823208	1.567301e-53	-8.615850e-47
Msa0120730	Msa0157290	0.831167	1.946020e-55	-8.615850e-47
Msa0120730	Msa0163980	0.871395	7.061392e-67	-8.615850e-47
Msa0120730	Msa0266450	0.813785	2.146401e-51	-8.615850e-47
Msa0120730	Msa0337540	0.803791	2.944716e-49	-8.615850e-47
Msa0120730	Msa0475790	0.826293	2.937548e-54	-8.615850e-47
Msa0120730	Msa0534590	0.816305	5.922418e-52	-8.615850e-47
Msa0120730	Msa0590800	0.814414	1.559436e-51	-8.615850e-47
Msa0120730	Msa0631120	0.811270	7.615294e-51	-8.615850e-47
Msa0120730	Msa0669340	0.818971	1.483315e-52	-8.615850e-47
Msa0120730	Msa0684500	0.828730	7.640496e-55	-8.615850e-47
Msa0120730	Msa0717260	0.801764	7.719212e-49	-8.615850e-47
Msa0120730	Msa0758320	0.806646	7.434118e-50	-8.615850e-47
Msa0120730	Msa0837980	0.804929	1.705993e-49	-8.615850e-47
Msa0120730	Msa0853320	0.808624	2.826355e-50	-8.615850e-47
Msa0120730	Msa0880140	0.837580	4.779822e-57	-8.615850e-47
Msa0120730	Msa1040400	0.802861	4.588592e-49	-8.615850e-47
Msa0120730	Msa1063950	0.800427	1.448539e-48	-8.615850e-47
Msa0120730	Msa1147900	0.800532	1.378853e-48	-8.615850e-47
Msa0120730	Msa1151910	0.820679	6.038323e-53	-8.615850e-47
Msa0120730	Msa1172450	0.909583	4.853580e-82	-8.615850e-47
Msa0120730	Msa1209460	0.800435	1.443454e-48	-8.615850e-47
Msa0120730	Msa1219260	0.811118	8.213303e-51	-8.615850e-47
Msa0120730	Msa1370090	0.807124	5.890639e-50	-8.615850e-47
Msa0120730	Msa1401150	0.821549	3.806930e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120730	MtrunA17_Chr1g0179191	96.132	517	6	3	1	509	1	511	0.0	1028
Msa0120730	MtrunA17_Chr7g0265831	51.193	545	150	17	7	509	5	475	7.39e-153	444
Msa0120730	MtrunA17_Chr1g0198171	39.850	399	172	14	19	372	10	385	6.83e-78	253
Msa0120730	MtrunA17_Chr6g0463941	38.567	293	133	5	122	368	46	337	5.20e-41	156
Msa0120730	MtrunA17_Chr6g0463941	47.312	93	47	2	125	216	460	551	5.25e-20	93.6
Msa0120730	MtrunA17_Chr1g0201911	33.333	291	165	4	129	395	55	340	1.62e-35	139
Msa0120730	MtrunA17_Chr1g0201911	40.458	131	71	4	118	247	361	485	2.52e-22	100
Msa0120730	MtrunA17_Chr1g0201941	65.263	95	30	2	123	215	49	142	1.32e-32	131
Msa0120730	MtrunA17_Chr1g0201941	46.000	100	51	3	120	218	446	543	2.40e-20	94.7
Msa0120730	MtrunA17_Chr1g0201941	39.535	86	52	0	283	368	272	357	1.83e-13	73.2
Msa0120730	MtrunA17_Chr7g0273941	36.220	127	70	3	102	218	354	479	1.77e-14	75.9
Msa0120730	MtrunA17_Chr1g0190851	29.046	241	145	8	130	364	104	324	1.97e-14	75.9
Msa0120730	MtrunA17_Chr1g0190851	37.607	117	58	4	129	231	418	533	2.43e-12	69.3
Msa0120730	MtrunA17_Chr2g0290511	38.053	113	65	3	124	232	257	368	4.10e-14	73.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0120730	AT5G03680.1	57.929	309	100	9	129	413	119	421	4.34e-101	316
Msa0120730	AT3G10000.1	44.170	446	198	13	96	506	49	478	5.96e-100	310
Msa0120730	AT3G10000.2	42.316	449	197	15	96	509	49	470	1.08e-89	283
Msa0120730	AT1G76890.2	33.654	312	135	7	122	368	34	338	1.75e-39	151
Msa0120730	AT1G76890.2	45.098	102	54	2	126	226	394	494	3.72e-19	91.3
Msa0120730	AT1G76880.1	63.918	97	32	2	129	225	61	154	1.56e-31	129
Msa0120730	AT1G76880.1	44.538	119	55	4	110	218	380	497	9.73e-19	89.7
Msa0120730	AT1G33240.3	64.368	87	30	1	129	215	62	147	1.29e-29	123
Msa0120730	AT1G33240.3	43.820	89	48	2	129	216	435	522	1.88e-16	82.8
Msa0120730	AT1G33240.1	64.368	87	30	1	129	215	62	147	1.79e-29	123
Msa0120730	AT1G33240.1	43.820	89	48	2	129	216	435	522	1.85e-16	82.8
Msa0120730	AT1G33240.2	43.820	89	48	2	129	216	396	483	1.97e-16	82.8
Msa0120730	AT1G33240.2	72.340	47	13	0	169	215	62	108	2.72e-15	79.3
Msa0120730	AT5G28300.1	39.604	101	49	4	129	218	459	558	1.27e-12	70.9
Msa0120730	AT5G47660.1	42.857	91	44	4	129	216	303	388	1.90e-11	66.2

Find 170 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGATTAGCTTCTTTAAATTT+AGG	0.106926	1_3:-45839103	None:intergenic
ACATGTATTTGATGTGTTTA+AGG	0.119061	1_3:+45841507	Msa0120730:three_prime_UTR
GGAAATTTGTGGGAGAATTT+TGG	0.154763	1_3:+45841262	Msa0120730:CDS
ATTATTGTTGTTGACAAAAT+TGG	0.173365	1_3:-45840471	None:intergenic
GGAAAAGTTCACTTGCTTAT+TGG	0.193573	1_3:+45841580	Msa0120730:three_prime_UTR
CTCTCATCAGTTAATGGTTT+TGG	0.213143	1_3:-45841306	None:intergenic
TCCTGAGACCACAGGTTATA+TGG	0.215513	1_3:+45839006	Msa0120730:CDS
CATAAACTCTCATCAGTTAA+TGG	0.217027	1_3:-45841312	None:intergenic
ATGGAAGCTTTGAAGAATTT+AGG	0.224314	1_3:+45840869	Msa0120730:CDS
CTCTTAATTATGACCCATTT+GGG	0.226325	1_3:-45842088	None:intergenic
AGCAAGGGATGCTGCTTTAA+TGG	0.232544	1_3:+45840850	Msa0120730:CDS
CGTCAACTTGAAGCTTTATA+TGG	0.241815	1_3:+45840416	Msa0120730:CDS
CATGATCATAAGGGTGTAAA+TGG	0.261143	1_3:+45840923	Msa0120730:CDS
GATTAGCTTCTTTAAATTTA+GGG	0.283381	1_3:-45839102	None:intergenic
GGCATGATGGTAAGCATTAC+AGG	0.285238	1_3:+45840387	Msa0120730:CDS
CATGTATTTGATGTGTTTAA+GGG	0.291153	1_3:+45841508	Msa0120730:three_prime_UTR
TTGTTGACAAAATTGGTTTC+TGG	0.294784	1_3:-45840464	None:intergenic
CCTCTTAATTATGACCCATT+TGG	0.302296	1_3:-45842089	None:intergenic
TATGATCATTGTGAGGGTTT+TGG	0.304071	1_3:-45840520	None:intergenic
AGGAGGTAGAGAAATGATTA+AGG	0.310468	1_3:+45840889	Msa0120730:CDS
GAATTGCATTAAAGATTATA+AGG	0.321400	1_3:+45842111	Msa0120730:three_prime_UTR
GTTCTGATAATTGTACTCTA+AGG	0.329879	1_3:+45841014	Msa0120730:CDS
TCTCATACTGTTGTTGTTGT+TGG	0.335695	1_3:-45838862	None:intergenic
GCTTCTTTAGTGTGCTGTTT+GGG	0.336131	1_3:+45841742	Msa0120730:three_prime_UTR
AAGGGTGTAAATGGAATAAC+TGG	0.343913	1_3:+45840932	Msa0120730:CDS
GATCCTGTCGTGCAGGAAAA+AGG	0.344541	1_3:-45838522	None:intergenic
TTTGGCTATTACTTGTTTGT+TGG	0.348056	1_3:-45840502	None:intergenic
GTTGTTGTTATTGTTGTTGA+AGG	0.351204	1_3:-45838953	None:intergenic
TACTCTAAGGGATGATTCTA+AGG	0.354428	1_3:+45841027	Msa0120730:CDS
TTAGATCATATTGTTGTTGA+TGG	0.360511	1_3:-45838703	None:intergenic
CAAATACATGTTTGGAATCA+TGG	0.367407	1_3:-45841495	None:intergenic
AGAGAGAGCTGAGAAGAGTT+AGG	0.371959	1_3:-45838395	None:intergenic
GATCGATCTAAATCCATGTT+TGG	0.373856	1_3:+45841359	Msa0120730:three_prime_UTR
TGCTTCTTTAGTGTGCTGTT+TGG	0.375364	1_3:+45841741	Msa0120730:three_prime_UTR
CCGTCGGTATAGATGGGAAA+TGG	0.377506	1_3:-45838754	None:intergenic
AAACACATCAAATACATGTT+TGG	0.382363	1_3:-45841503	None:intergenic
TATTACTTGTTTGTTGGAAA+TGG	0.383105	1_3:-45840496	None:intergenic
TGGTTTCTGGTAGAGAAGTT+TGG	0.387708	1_3:-45840451	None:intergenic
GTTTCTGTGTACTGATCATA+TGG	0.392340	1_3:+45841794	Msa0120730:three_prime_UTR
TTTACTTTAATGCATGAAGA+TGG	0.394689	1_3:+45841630	Msa0120730:three_prime_UTR
TTTAAAGAAGCTAATCAAAA+AGG	0.402136	1_3:+45839109	Msa0120730:CDS
AGAGTAGTGGAAGAAGAAGT+TGG	0.406533	1_3:+45840627	Msa0120730:CDS
CATCGTTTGATCACCCCAAA+TGG	0.411468	1_3:+45842074	Msa0120730:three_prime_UTR
TCACCTTCTGATTCTAATGT+TGG	0.411980	1_3:+45841190	Msa0120730:CDS
TTAACAAAGCTGTCAGATTC+CGG	0.414479	1_3:-45838805	None:intergenic
GTAGCCGCCGTCGGTATAGA+TGG	0.419205	1_3:-45838761	None:intergenic
AGAGTAAGAGTTTCTTGTCT+TGG	0.432446	1_3:-45839055	None:intergenic
TGAAGAAGCTCATGATCATA+AGG	0.433018	1_3:+45840913	Msa0120730:CDS
CCCATATAACCTGTGGTCTC+AGG	0.433556	1_3:-45839007	None:intergenic
GTTTGGATTGACAGTGAGTT+CGG	0.444528	1_3:+45841376	Msa0120730:three_prime_UTR
TTGAGTTAGTAGTGAGACTA+AGG	0.450800	1_3:-45840544	None:intergenic
CCAAATGGGTCATAATTAAG+AGG	0.452470	1_3:+45842089	Msa0120730:three_prime_UTR
ATTCAAAATCAAAATGAAGA+TGG	0.456037	1_3:+45840962	Msa0120730:CDS
TTTGGAGTAATGAGAGAGCA+TGG	0.461952	1_3:+45840822	Msa0120730:CDS
AGAATAGAACCAATGTCTAT+AGG	0.461959	1_3:-45842185	None:intergenic
GTTTAGTGATGGAGATAAAG+TGG	0.469595	1_3:+45841559	Msa0120730:three_prime_UTR
GTTATTATGTTTACATCAGT+TGG	0.471072	1_3:+45841693	Msa0120730:three_prime_UTR
TTGGAATATGACAAAAGATC+AGG	0.472707	1_3:+45841599	Msa0120730:three_prime_UTR
ATGATTCTAAGGAAGGAAAC+AGG	0.472723	1_3:+45841038	Msa0120730:CDS
ATTGTTGTTGAAGGTGGTGG+TGG	0.473372	1_3:-45838944	None:intergenic
GTTATTGTTGTTGAAGGTGG+TGG	0.474694	1_3:-45838947	None:intergenic
GGAGGAAACAAGAGGCCAAA+AGG	0.485530	1_3:+45840780	Msa0120730:CDS
TTGAGTCTTCCTATAGACAT+TGG	0.487925	1_3:+45842176	Msa0120730:three_prime_UTR
TTACTTTAATGCATGAAGAT+GGG	0.488805	1_3:+45841631	Msa0120730:three_prime_UTR
AAGACAAAAGAAGGTAAAGC+AGG	0.492542	1_3:+45840362	Msa0120730:CDS
AGCTGTCAGATTCCGGTGAC+CGG	0.495878	1_3:-45838798	None:intergenic
GTTGTTATTGTTGTTGAAGG+TGG	0.496177	1_3:-45838950	None:intergenic
AAGGCTCAAGTTTGAAGCTA+AGG	0.497088	1_3:-45838503	None:intergenic
GATACGTCGTCGTCTGATGA+TGG	0.498562	1_3:+45840581	Msa0120730:CDS
CTTTCCTTTCATGATTAGTG+AGG	0.500450	1_3:+45841237	Msa0120730:CDS
CCTGAGACCACAGGTTATAT+GGG	0.501183	1_3:+45839007	Msa0120730:CDS
GACACTTGAGGACAAGGAAA+AGG	0.501629	1_3:+45840733	Msa0120730:CDS
GATCTAAGACAGCTGGTGAA+TGG	0.501998	1_3:+45838719	Msa0120730:CDS
CATGTATATATGAGAGGCTA+GGG	0.504957	1_3:-45838637	None:intergenic
GGAAGGAAACAGGAAGAGAA+AGG	0.505443	1_3:+45841048	Msa0120730:CDS
GGGCGTTAAGAGAAGAAGAG+TGG	0.505945	1_3:+45840759	Msa0120730:CDS
TCATGTATATATGAGAGGCT+AGG	0.508330	1_3:-45838638	None:intergenic
TTCAAAATCAAAATGAAGAT+GGG	0.510698	1_3:+45840963	Msa0120730:CDS
ATCTATACCGACGGCGGCTA+CGG	0.512912	1_3:+45838763	Msa0120730:CDS
CGTCGGTATAGATGGGAAAT+GGG	0.514510	1_3:-45838753	None:intergenic
GGTGATGACCATGATTGTTA+TGG	0.516651	1_3:-45838676	None:intergenic
GAAGAAAGCAGCGGCAGAGT+CGG	0.518458	1_3:-45838544	None:intergenic
CAATGTTCTATGTACAATCA+AGG	0.520932	1_3:+45841097	Msa0120730:CDS
CTAAGGGATGATTCTAAGGA+AGG	0.524712	1_3:+45841031	Msa0120730:CDS
CTAGAGACTTCATCCCATAA+AGG	0.525783	1_3:-45839133	None:intergenic
TGAAGAAGAAGTAATAAGTG+AGG	0.528667	1_3:-45838575	None:intergenic
ATCGTTTGATCACCCCAAAT+GGG	0.529797	1_3:+45842075	Msa0120730:three_prime_UTR
TTGTCTTGGCCATCTTCCAG+TGG	0.530040	1_3:-45839041	None:intergenic
TAGTGAGGGTGGAAATTTGT+GGG	0.530887	1_3:+45841252	Msa0120730:CDS
AATCTGTTCAAGTTTAGTGA+TGG	0.532748	1_3:+45841548	Msa0120730:three_prime_UTR
TATTATAAGAAGACAAAAGA+AGG	0.535142	1_3:+45840353	Msa0120730:CDS
TTTCCTTTCATGATTAGTGA+GGG	0.536493	1_3:+45841238	Msa0120730:CDS
AAACTACAAAGGAATGATCA+TGG	0.537652	1_3:+45841163	Msa0120730:CDS
AACTCATCCGTAGCCGCCGT+CGG	0.541672	1_3:-45838770	None:intergenic
CATATTGTTGTTGATGGTGA+TGG	0.543631	1_3:-45838697	None:intergenic
AAGGGAAAGAAGAAGAGTAG+TGG	0.550255	1_3:+45840614	Msa0120730:CDS
AAACATGGATTTAGATCGAT+CGG	0.551290	1_3:-45841357	None:intergenic
CTTTATGGGATGAAGTCTCT+AGG	0.552690	1_3:+45839134	Msa0120730:CDS
GATGACCACCATAACAATCA+TGG	0.553172	1_3:+45838668	Msa0120730:CDS
ACAATATGATCTAAGACAGC+TGG	0.560078	1_3:+45838712	Msa0120730:CDS
GAGATGCATCCACTGGAAGA+TGG	0.561119	1_3:+45839032	Msa0120730:CDS
AATGTTGGAAATGTAGCTAA+TGG	0.561430	1_3:+45841205	Msa0120730:CDS
TTCTGATAATTGTACTCTAA+GGG	0.561784	1_3:+45841015	Msa0120730:CDS
GAGGAAACAAGAGGCCAAAA+GGG	0.564460	1_3:+45840781	Msa0120730:CDS
GAAGAAGAAGTAATAAGTGA+GGG	0.565315	1_3:-45838574	None:intergenic
GAAGCTTTGAAGAATTTAGG+AGG	0.565385	1_3:+45840872	Msa0120730:CDS
ATGGGTGGAGATGCATCCAC+TGG	0.565514	1_3:+45839025	Msa0120730:CDS
GGTAAAGCAGGAAGGCATGA+TGG	0.566904	1_3:+45840374	Msa0120730:CDS
GATGTAAACATAATAACTGA+AGG	0.570199	1_3:-45841687	None:intergenic
CTAAAGAAGCATGAGGGGAA+AGG	0.570963	1_3:-45841729	None:intergenic
TAGTGGAAGAAGAAGTTGGA+AGG	0.571374	1_3:+45840631	Msa0120730:CDS
CCACCCTCACTAATCATGAA+AGG	0.571997	1_3:-45841241	None:intergenic
CCTTTCATGATTAGTGAGGG+TGG	0.572090	1_3:+45841241	Msa0120730:CDS
AGAGTCGGATCCTGTCGTGC+AGG	0.572753	1_3:-45838529	None:intergenic
CTGAAGAACATGGATATCAA+AGG	0.576035	1_3:+45840288	Msa0120730:CDS
TCTATGTACAATCAAGGAAG+TGG	0.576269	1_3:+45841103	Msa0120730:CDS
CAGTATGAGATGATGATGCT+AGG	0.576911	1_3:+45838875	Msa0120730:CDS
GAGAGCATGGATTGAAGCAA+GGG	0.577276	1_3:+45840835	Msa0120730:CDS
CAACGTGATTTCGTCAAACT+CGG	0.577947	1_3:-45841875	None:intergenic
GTTTCAACTCCTGAGACCAC+AGG	0.581549	1_3:+45838998	Msa0120730:CDS
TGAAGCTAAGGACAATGGTA+TGG	0.582074	1_3:-45838491	None:intergenic
GAAGAAGCTCATGATCATAA+GGG	0.582156	1_3:+45840914	Msa0120730:CDS
TTTCCAACATTAGAATCAGA+AGG	0.583715	1_3:-45841193	None:intergenic
AGAGAGCATGGATTGAAGCA+AGG	0.583741	1_3:+45840834	Msa0120730:CDS
CACTTGTGTACACACAGACA+TGG	0.589280	1_3:+45838466	Msa0120730:five_prime_UTR
TGTGAAGACACTTGAGGACA+AGG	0.590043	1_3:+45840727	Msa0120730:CDS
TAGCCGCCGTCGGTATAGAT+GGG	0.591582	1_3:-45838760	None:intergenic
GAACATGGATATCAAAGGAG+TGG	0.592797	1_3:+45840293	Msa0120730:CDS
GAAACAAGAGGCCAAAAGGG+TGG	0.597918	1_3:+45840784	Msa0120730:CDS
TAAGGCTATGATCATTGTGA+GGG	0.598377	1_3:-45840526	None:intergenic
CAAAAGAAGGTAAAGCAGGA+AGG	0.606280	1_3:+45840366	Msa0120730:CDS
AGGATAATGTCTGAAGAACA+TGG	0.616822	1_3:+45840278	Msa0120730:intron
CTAAGGCTATGATCATTGTG+AGG	0.617388	1_3:-45840527	None:intergenic
AACACTAGCACTAGCAGTGG+TGG	0.618195	1_3:-45838978	None:intergenic
TGATGTTAATGATCAAAGAG+AGG	0.618449	1_3:+45841132	Msa0120730:CDS
TGATGATGGCAATGATGTGA+AGG	0.618528	1_3:+45840595	Msa0120730:CDS
CGTTAAGAGAAGAAGAGTGG+AGG	0.619013	1_3:+45840762	Msa0120730:CDS
TAAACATGTACTGTGCATGC+AGG	0.622094	1_3:+45841765	Msa0120730:three_prime_UTR
GATGACCATGATTGTTATGG+TGG	0.622653	1_3:-45838673	None:intergenic
ATGTAAACATAATAACTGAA+GGG	0.622934	1_3:-45841686	None:intergenic
AGCACACTAAAGAAGCATGA+GGG	0.623517	1_3:-45841735	None:intergenic
ATCTTGAATAGTACTGTGAG+AGG	0.628009	1_3:+45840992	Msa0120730:CDS
ATGTCTATAGGAAGACTCAA+AGG	0.628388	1_3:-45842173	None:intergenic
GACAGCTGGTGAATGGAACA+AGG	0.631622	1_3:+45838726	Msa0120730:CDS
AGAAGAGTGGAGGAAACAAG+AGG	0.631900	1_3:+45840772	Msa0120730:CDS
CCATTTCCCATCTATACCGA+CGG	0.632460	1_3:+45838754	Msa0120730:CDS
TCTTAATTATGACCCATTTG+GGG	0.634357	1_3:-45842087	None:intergenic
TGAGGACAAGGAAAAGGAGA+GGG	0.634562	1_3:+45840739	Msa0120730:CDS
AGGAGATTGTGAAACTACAA+AGG	0.636318	1_3:+45841152	Msa0120730:CDS
TTGTCAAAACTACGATGGCG+TGG	0.637473	1_3:+45841937	Msa0120730:three_prime_UTR
GAAGCTTGTGGAGAAGCAAG+AGG	0.641062	1_3:+45840688	Msa0120730:CDS
CAACATTAATAAATATAGTG+TGG	0.642065	1_3:-45842150	None:intergenic
GAGATGATGATGCTAGGTCG+TGG	0.645971	1_3:+45838881	Msa0120730:CDS
CAGCACACTAAAGAAGCATG+AGG	0.646704	1_3:-45841736	None:intergenic
GAGACCACAGGTTATATGGG+TGG	0.648008	1_3:+45839010	Msa0120730:CDS
ATACACATGCTAATAAACAA+AGG	0.648070	1_3:-45841837	None:intergenic
TGCACAAATGAAGAAGCTTG+TGG	0.649032	1_3:+45840676	Msa0120730:CDS
AAGTTTGAAGCTAAGGACAA+TGG	0.655035	1_3:-45838496	None:intergenic
TTGTGGAGAAGCAAGAGGAG+TGG	0.656273	1_3:+45840693	Msa0120730:CDS
ATCTCCACCCATATAACCTG+TGG	0.658151	1_3:-45839014	None:intergenic
ACTCACTGTCAATCCAAACA+TGG	0.659105	1_3:-45841372	None:intergenic
ACTTGTGTACACACAGACAT+GGG	0.659567	1_3:+45838467	Msa0120730:five_prime_UTR
GGAGAGAGTGAAGAAAGCAG+CGG	0.666908	1_3:-45838553	None:intergenic
GCACACTAAAGAAGCATGAG+GGG	0.667380	1_3:-45841734	None:intergenic
TGAAACACTAGCACTAGCAG+TGG	0.671025	1_3:-45838981	None:intergenic
TTGAGGACAAGGAAAAGGAG+AGG	0.672502	1_3:+45840738	Msa0120730:CDS
GATGATGGCAATGATGTGAA+GGG	0.683964	1_3:+45840596	Msa0120730:CDS
TTAGTGAGGGTGGAAATTTG+TGG	0.685166	1_3:+45841251	Msa0120730:CDS
TAAGCTTGTGAAGACACTTG+AGG	0.695179	1_3:+45840721	Msa0120730:CDS
TTTCCCATCTATACCGACGG+CGG	0.790683	1_3:+45838757	Msa0120730:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAAGATGAAATTTAATAAA+GGG	-	chr1_3:45839737-45839756	None:intergenic	10.0%
!!	GTAAAGATGAAATTTAATAA+AGG	-	chr1_3:45839738-45839757	None:intergenic	15.0%
!!	AATTAATAATGACATTATTG+TGG	-	chr1_3:45840128-45840147	None:intergenic	15.0%
!!!	TTTTTTCATGTATATATGAG+AGG	-	chr1_3:45838646-45838665	None:intergenic	20.0%
!!	CTCATATATACATGAAAAAA+TGG	+	chr1_3:45838646-45838665	Msa0120730:exon	20.0%
!!!	GATTAGCTTCTTTAAATTTA+GGG	-	chr1_3:45839105-45839124	None:intergenic	20.0%
!!!	TGATTAGCTTCTTTAAATTT+AGG	-	chr1_3:45839106-45839125	None:intergenic	20.0%
!!	TTTAAAGAAGCTAATCAAAA+AGG	+	chr1_3:45839109-45839128	Msa0120730:CDS	20.0%
!!	ACATAAATTACATCTACATA+AGG	-	chr1_3:45840214-45840233	None:intergenic	20.0%
!!!	ATATTTGTTTGATACCATTT+TGG	+	chr1_3:45840253-45840272	Msa0120730:intron	20.0%
!!	TATTATAAGAAGACAAAAGA+AGG	+	chr1_3:45840353-45840372	Msa0120730:CDS	20.0%
!!!	ATTATTGTTGTTGACAAAAT+TGG	-	chr1_3:45840474-45840493	None:intergenic	20.0%
!!	ATTCAAAATCAAAATGAAGA+TGG	+	chr1_3:45840962-45840981	Msa0120730:CDS	20.0%
!!	TTCAAAATCAAAATGAAGAT+GGG	+	chr1_3:45840963-45840982	Msa0120730:CDS	20.0%
!!!	TTAAAGCTTTTACAAAATCA+CGG	+	chr1_3:45841445-45841464	Msa0120730:three_prime_UTR	20.0%
!!	ATGTAAACATAATAACTGAA+GGG	-	chr1_3:45841689-45841708	None:intergenic	20.0%
!!	GAATTGCATTAAAGATTATA+AGG	+	chr1_3:45842111-45842130	Msa0120730:three_prime_UTR	20.0%
!!	CAACATTAATAAATATAGTG+TGG	-	chr1_3:45842153-45842172	None:intergenic	20.0%
!	ATGAGATTGAAGAAAAAGAA+TGG	-	chr1_3:45838602-45838621	None:intergenic	25.0%
!!	TTAGATCATATTGTTGTTGA+TGG	-	chr1_3:45838706-45838725	None:intergenic	25.0%
!	TAATCAAAAAGGTCCTTTAT+GGG	+	chr1_3:45839120-45839139	Msa0120730:CDS	25.0%
!!!	TTGGAGTTAATTTGTTTGAT+GGG	+	chr1_3:45839444-45839463	Msa0120730:intron	25.0%
!	GTTAAGCTTAAAATGAGTAT+AGG	+	chr1_3:45839530-45839549	Msa0120730:intron	25.0%
!!	AAATTTTGCACTTAAAAGAG+GGG	-	chr1_3:45839710-45839729	None:intergenic	25.0%
!!	CAAATTTTGCACTTAAAAGA+GGG	-	chr1_3:45839711-45839730	None:intergenic	25.0%
!!	ACAAATTTTGCACTTAAAAG+AGG	-	chr1_3:45839712-45839731	None:intergenic	25.0%
!!!	TAGTTATGTTTGCTATAACT+AGG	+	chr1_3:45839943-45839962	Msa0120730:intron	25.0%
!!	TATTACTTGTTTGTTGGAAA+TGG	-	chr1_3:45840499-45840518	None:intergenic	25.0%
!!	TGGAAAAAGAACAAAAGTTT+TGG	+	chr1_3:45840804-45840823	Msa0120730:CDS	25.0%
!	TTCTGATAATTGTACTCTAA+GGG	+	chr1_3:45841015-45841034	Msa0120730:CDS	25.0%
!!	CACAGTTTTTAACAAAATCA+GGG	-	chr1_3:45841420-45841439	None:intergenic	25.0%
!!	TCACAGTTTTTAACAAAATC+AGG	-	chr1_3:45841421-45841440	None:intergenic	25.0%
!	AAACACATCAAATACATGTT+TGG	-	chr1_3:45841506-45841525	None:intergenic	25.0%
!	ACATGTATTTGATGTGTTTA+AGG	+	chr1_3:45841507-45841526	Msa0120730:three_prime_UTR	25.0%
!	CATGTATTTGATGTGTTTAA+GGG	+	chr1_3:45841508-45841527	Msa0120730:three_prime_UTR	25.0%
!	TTTACTTTAATGCATGAAGA+TGG	+	chr1_3:45841630-45841649	Msa0120730:three_prime_UTR	25.0%
!	TTACTTTAATGCATGAAGAT+GGG	+	chr1_3:45841631-45841650	Msa0120730:three_prime_UTR	25.0%
!	GATGTAAACATAATAACTGA+AGG	-	chr1_3:45841690-45841709	None:intergenic	25.0%
!	GTTATTATGTTTACATCAGT+TGG	+	chr1_3:45841693-45841712	Msa0120730:three_prime_UTR	25.0%
!	ATACACATGCTAATAAACAA+AGG	-	chr1_3:45841840-45841859	None:intergenic	25.0%
!!	AATTTTTGTCAAAACTACGA+TGG	+	chr1_3:45841932-45841951	Msa0120730:three_prime_UTR	25.0%
	GAAGAAGAAGTAATAAGTGA+GGG	-	chr1_3:45838577-45838596	None:intergenic	30.0%
	TGAAGAAGAAGTAATAAGTG+AGG	-	chr1_3:45838578-45838597	None:intergenic	30.0%
!	GTTGTTGTTATTGTTGTTGA+AGG	-	chr1_3:45838956-45838975	None:intergenic	30.0%
	CTAATCAAAAAGGTCCTTTA+TGG	+	chr1_3:45839119-45839138	Msa0120730:CDS	30.0%
!!	CTTGGAGTTAATTTGTTTGA+TGG	+	chr1_3:45839443-45839462	Msa0120730:intron	30.0%
!!	TGGAGTTAATTTGTTTGATG+GGG	+	chr1_3:45839445-45839464	Msa0120730:intron	30.0%
!!	TAATTTGTTTGATGGGGATT+CGG	+	chr1_3:45839451-45839470	Msa0120730:intron	30.0%
	TAGCAAACATAACTAAGCAT+AGG	-	chr1_3:45839938-45839957	None:intergenic	30.0%
	TCACATGATTAGACTTCTTT+AGG	+	chr1_3:45840037-45840056	Msa0120730:intron	30.0%
!!!	TGTTTGATACCATTTTGGTT+AGG	+	chr1_3:45840258-45840277	Msa0120730:intron	30.0%
	AGACATTATCCTAACCAAAA+TGG	-	chr1_3:45840270-45840289	None:intergenic	30.0%
!	TTGTTGACAAAATTGGTTTC+TGG	-	chr1_3:45840467-45840486	None:intergenic	30.0%
	TTTGGCTATTACTTGTTTGT+TGG	-	chr1_3:45840505-45840524	None:intergenic	30.0%
!!	ATGGAAGCTTTGAAGAATTT+AGG	+	chr1_3:45840869-45840888	Msa0120730:CDS	30.0%
	GTTCTGATAATTGTACTCTA+AGG	+	chr1_3:45841014-45841033	Msa0120730:CDS	30.0%
	CAATGTTCTATGTACAATCA+AGG	+	chr1_3:45841097-45841116	Msa0120730:CDS	30.0%
	TGATGTTAATGATCAAAGAG+AGG	+	chr1_3:45841132-45841151	Msa0120730:CDS	30.0%
	AAACTACAAAGGAATGATCA+TGG	+	chr1_3:45841163-45841182	Msa0120730:CDS	30.0%
	TTTCCAACATTAGAATCAGA+AGG	-	chr1_3:45841196-45841215	None:intergenic	30.0%
	AATGTTGGAAATGTAGCTAA+TGG	+	chr1_3:45841205-45841224	Msa0120730:CDS	30.0%
	TTTCCTTTCATGATTAGTGA+GGG	+	chr1_3:45841238-45841257	Msa0120730:CDS	30.0%
	CATAAACTCTCATCAGTTAA+TGG	-	chr1_3:45841315-45841334	None:intergenic	30.0%
	AAACATGGATTTAGATCGAT+CGG	-	chr1_3:45841360-45841379	None:intergenic	30.0%
!	AGTTTTTAACAAAATCAGGG+TGG	-	chr1_3:45841417-45841436	None:intergenic	30.0%
!	CAAATACATGTTTGGAATCA+TGG	-	chr1_3:45841498-45841517	None:intergenic	30.0%
!	AATCTGTTCAAGTTTAGTGA+TGG	+	chr1_3:45841548-45841567	Msa0120730:three_prime_UTR	30.0%
	TTGGAATATGACAAAAGATC+AGG	+	chr1_3:45841599-45841618	Msa0120730:three_prime_UTR	30.0%
	TCTTAATTATGACCCATTTG+GGG	-	chr1_3:45842090-45842109	None:intergenic	30.0%
	CTCTTAATTATGACCCATTT+GGG	-	chr1_3:45842091-45842110	None:intergenic	30.0%
	AGAATAGAACCAATGTCTAT+AGG	-	chr1_3:45842188-45842207	None:intergenic	30.0%
!	AAGTTTGAAGCTAAGGACAA+TGG	-	chr1_3:45838499-45838518	None:intergenic	35.0%
	CATGTATATATGAGAGGCTA+GGG	-	chr1_3:45838640-45838659	None:intergenic	35.0%
	TCATGTATATATGAGAGGCT+AGG	-	chr1_3:45838641-45838660	None:intergenic	35.0%
!!	CATATTGTTGTTGATGGTGA+TGG	-	chr1_3:45838700-45838719	None:intergenic	35.0%
!	ACAATATGATCTAAGACAGC+TGG	+	chr1_3:45838712-45838731	Msa0120730:CDS	35.0%
	TTAACAAAGCTGTCAGATTC+CGG	-	chr1_3:45838808-45838827	None:intergenic	35.0%
!	TTTTGATGTGTCTGTGGATT+AGG	-	chr1_3:45838842-45838861	None:intergenic	35.0%
!	TCTCATACTGTTGTTGTTGT+TGG	-	chr1_3:45838865-45838884	None:intergenic	35.0%
!	GTTGTTATTGTTGTTGAAGG+TGG	-	chr1_3:45838953-45838972	None:intergenic	35.0%
	AGAGTAAGAGTTTCTTGTCT+TGG	-	chr1_3:45839058-45839077	None:intergenic	35.0%
	TGAGTATGAAGAAGCTATGT+GGG	-	chr1_3:45839221-45839240	None:intergenic	35.0%
	TTGAGTATGAAGAAGCTATG+TGG	-	chr1_3:45839222-45839241	None:intergenic	35.0%
!	AATTTGTTTGATGGGGATTC+GGG	+	chr1_3:45839452-45839471	Msa0120730:intron	35.0%
	TGGTGGAATCTTACTAAACT+TGG	-	chr1_3:45839656-45839675	None:intergenic	35.0%
	TTGTAAGCAAATGCAGACAT+TGG	-	chr1_3:45839829-45839848	None:intergenic	35.0%
	TATGAAATGACATCAAGCTG+AGG	+	chr1_3:45839854-45839873	Msa0120730:intron	35.0%
!!	TCACACATTTCTAGCTAACT+AGG	+	chr1_3:45840075-45840094	Msa0120730:intron	35.0%
!!	CACACATTTCTAGCTAACTA+GGG	+	chr1_3:45840076-45840095	Msa0120730:intron	35.0%
	AGGATAATGTCTGAAGAACA+TGG	+	chr1_3:45840278-45840297	Msa0120730:intron	35.0%
	CTGAAGAACATGGATATCAA+AGG	+	chr1_3:45840288-45840307	Msa0120730:CDS	35.0%
	AAGACAAAAGAAGGTAAAGC+AGG	+	chr1_3:45840362-45840381	Msa0120730:CDS	35.0%
!	CGTCAACTTGAAGCTTTATA+TGG	+	chr1_3:45840416-45840435	Msa0120730:CDS	35.0%
!	TATGATCATTGTGAGGGTTT+TGG	-	chr1_3:45840523-45840542	None:intergenic	35.0%
	TAAGGCTATGATCATTGTGA+GGG	-	chr1_3:45840529-45840548	None:intergenic	35.0%
	TTGAGTTAGTAGTGAGACTA+AGG	-	chr1_3:45840547-45840566	None:intergenic	35.0%
!	TTGTTCTTTTTCCACCCTTT+TGG	-	chr1_3:45840798-45840817	None:intergenic	35.0%
!!	GAAGCTTTGAAGAATTTAGG+AGG	+	chr1_3:45840872-45840891	Msa0120730:CDS	35.0%
	AGGAGGTAGAGAAATGATTA+AGG	+	chr1_3:45840889-45840908	Msa0120730:CDS	35.0%
	TGAAGAAGCTCATGATCATA+AGG	+	chr1_3:45840913-45840932	Msa0120730:CDS	35.0%
	GAAGAAGCTCATGATCATAA+GGG	+	chr1_3:45840914-45840933	Msa0120730:CDS	35.0%
!	CATGATCATAAGGGTGTAAA+TGG	+	chr1_3:45840923-45840942	Msa0120730:CDS	35.0%
!	AAGGGTGTAAATGGAATAAC+TGG	+	chr1_3:45840932-45840951	Msa0120730:CDS	35.0%
	ATCTTGAATAGTACTGTGAG+AGG	+	chr1_3:45840992-45841011	Msa0120730:CDS	35.0%
!	TACTCTAAGGGATGATTCTA+AGG	+	chr1_3:45841027-45841046	Msa0120730:CDS	35.0%
!	ATGATTCTAAGGAAGGAAAC+AGG	+	chr1_3:45841038-45841057	Msa0120730:CDS	35.0%
	TCTATGTACAATCAAGGAAG+TGG	+	chr1_3:45841103-45841122	Msa0120730:CDS	35.0%
	AGGAGATTGTGAAACTACAA+AGG	+	chr1_3:45841152-45841171	Msa0120730:CDS	35.0%
	TCACCTTCTGATTCTAATGT+TGG	+	chr1_3:45841190-45841209	Msa0120730:CDS	35.0%
	CTTTCCTTTCATGATTAGTG+AGG	+	chr1_3:45841237-45841256	Msa0120730:CDS	35.0%
!	GGAAATTTGTGGGAGAATTT+TGG	+	chr1_3:45841262-45841281	Msa0120730:CDS	35.0%
!	CTCTCATCAGTTAATGGTTT+TGG	-	chr1_3:45841309-45841328	None:intergenic	35.0%
	GATCGATCTAAATCCATGTT+TGG	+	chr1_3:45841359-45841378	Msa0120730:three_prime_UTR	35.0%
!	GTTTAGTGATGGAGATAAAG+TGG	+	chr1_3:45841559-45841578	Msa0120730:three_prime_UTR	35.0%
	GGAAAAGTTCACTTGCTTAT+TGG	+	chr1_3:45841580-45841599	Msa0120730:three_prime_UTR	35.0%
!	GTTTCTGTGTACTGATCATA+TGG	+	chr1_3:45841794-45841813	Msa0120730:three_prime_UTR	35.0%
	CCTCTTAATTATGACCCATT+TGG	-	chr1_3:45842092-45842111	None:intergenic	35.0%
	CCAAATGGGTCATAATTAAG+AGG	+	chr1_3:45842089-45842108	Msa0120730:three_prime_UTR	35.0%
	ATGTCTATAGGAAGACTCAA+AGG	-	chr1_3:45842176-45842195	None:intergenic	35.0%
	TTGAGTCTTCCTATAGACAT+TGG	+	chr1_3:45842176-45842195	Msa0120730:three_prime_UTR	35.0%
	ACTTGTGTACACACAGACAT+GGG	+	chr1_3:45838467-45838486	Msa0120730:five_prime_UTR	40.0%
	TGAAGCTAAGGACAATGGTA+TGG	-	chr1_3:45838494-45838513	None:intergenic	40.0%
!	AAGGCTCAAGTTTGAAGCTA+AGG	-	chr1_3:45838506-45838525	None:intergenic	40.0%
	GATGACCACCATAACAATCA+TGG	+	chr1_3:45838668-45838687	Msa0120730:CDS	40.0%
	GATGACCATGATTGTTATGG+TGG	-	chr1_3:45838676-45838695	None:intergenic	40.0%
	GGTGATGACCATGATTGTTA+TGG	-	chr1_3:45838679-45838698	None:intergenic	40.0%
!!!	TGTTGGTTTTGATGTGTCTG+TGG	-	chr1_3:45838848-45838867	None:intergenic	40.0%
!	CAGTATGAGATGATGATGCT+AGG	+	chr1_3:45838875-45838894	Msa0120730:CDS	40.0%
!	GTTATTGTTGTTGAAGGTGG+TGG	-	chr1_3:45838950-45838969	None:intergenic	40.0%
	CTAGAGACTTCATCCCATAA+AGG	-	chr1_3:45839136-45839155	None:intergenic	40.0%
	CTTTATGGGATGAAGTCTCT+AGG	+	chr1_3:45839134-45839153	Msa0120730:CDS	40.0%
	TGAAATGACATGACTGCACT+TGG	+	chr1_3:45839425-45839444	Msa0120730:intron	40.0%
	AAAGTGGAAAAACGAGACAG+TGG	-	chr1_3:45839676-45839695	None:intergenic	40.0%
!	AGGGGTACAAAGTTTCAAAG+TGG	-	chr1_3:45839692-45839711	None:intergenic	40.0%
	AGCAAATGCAGACATTGGAA+TGG	-	chr1_3:45839824-45839843	None:intergenic	40.0%
	ACAACAAAAACGTCAGTGCA+TGG	+	chr1_3:45839974-45839993	Msa0120730:intron	40.0%
	GAACATGGATATCAAAGGAG+TGG	+	chr1_3:45840293-45840312	Msa0120730:CDS	40.0%
	CAAAAGAAGGTAAAGCAGGA+AGG	+	chr1_3:45840366-45840385	Msa0120730:CDS	40.0%
!!	TGGTTTCTGGTAGAGAAGTT+TGG	-	chr1_3:45840454-45840473	None:intergenic	40.0%
	CTAAGGCTATGATCATTGTG+AGG	-	chr1_3:45840530-45840549	None:intergenic	40.0%
!!	TGATGATGGCAATGATGTGA+AGG	+	chr1_3:45840595-45840614	Msa0120730:CDS	40.0%
!	GATGATGGCAATGATGTGAA+GGG	+	chr1_3:45840596-45840615	Msa0120730:CDS	40.0%
	AAGGGAAAGAAGAAGAGTAG+TGG	+	chr1_3:45840614-45840633	Msa0120730:CDS	40.0%
!	AGAGTAGTGGAAGAAGAAGT+TGG	+	chr1_3:45840627-45840646	Msa0120730:CDS	40.0%
	TAGTGGAAGAAGAAGTTGGA+AGG	+	chr1_3:45840631-45840650	Msa0120730:CDS	40.0%
	TGCACAAATGAAGAAGCTTG+TGG	+	chr1_3:45840676-45840695	Msa0120730:CDS	40.0%
	TAAGCTTGTGAAGACACTTG+AGG	+	chr1_3:45840721-45840740	Msa0120730:CDS	40.0%
!	TTTGGAGTAATGAGAGAGCA+TGG	+	chr1_3:45840822-45840841	Msa0120730:CDS	40.0%
!	CTAAGGGATGATTCTAAGGA+AGG	+	chr1_3:45841031-45841050	Msa0120730:CDS	40.0%
	TTAGTGAGGGTGGAAATTTG+TGG	+	chr1_3:45841251-45841270	Msa0120730:CDS	40.0%
	TAGTGAGGGTGGAAATTTGT+GGG	+	chr1_3:45841252-45841271	Msa0120730:CDS	40.0%
	ACTCACTGTCAATCCAAACA+TGG	-	chr1_3:45841375-45841394	None:intergenic	40.0%
	GTTTGGATTGACAGTGAGTT+CGG	+	chr1_3:45841376-45841395	Msa0120730:three_prime_UTR	40.0%
!	AGCACACTAAAGAAGCATGA+GGG	-	chr1_3:45841738-45841757	None:intergenic	40.0%
!	TGCTTCTTTAGTGTGCTGTT+TGG	+	chr1_3:45841741-45841760	Msa0120730:three_prime_UTR	40.0%
!!	GCTTCTTTAGTGTGCTGTTT+GGG	+	chr1_3:45841742-45841761	Msa0120730:three_prime_UTR	40.0%
	TAAACATGTACTGTGCATGC+AGG	+	chr1_3:45841765-45841784	Msa0120730:three_prime_UTR	40.0%
	CAACGTGATTTCGTCAAACT+CGG	-	chr1_3:45841878-45841897	None:intergenic	40.0%
	ATCGTTTGATCACCCCAAAT+GGG	+	chr1_3:45842075-45842094	Msa0120730:three_prime_UTR	40.0%
	CACTTGTGTACACACAGACA+TGG	+	chr1_3:45838466-45838485	Msa0120730:five_prime_UTR	45.0%
!	GATCTAAGACAGCTGGTGAA+TGG	+	chr1_3:45838719-45838738	Msa0120730:CDS	45.0%
	CGTCGGTATAGATGGGAAAT+GGG	-	chr1_3:45838756-45838775	None:intergenic	45.0%
	CCATTTCCCATCTATACCGA+CGG	+	chr1_3:45838754-45838773	Msa0120730:CDS	45.0%
!	GCTACGGATGAGTTTTTCTC+CGG	+	chr1_3:45838779-45838798	Msa0120730:CDS	45.0%
!	ATGAGTTTTTCTCCGGTCAC+CGG	+	chr1_3:45838786-45838805	Msa0120730:CDS	45.0%
!	ATTGTTGTTGAAGGTGGTGG+TGG	-	chr1_3:45838947-45838966	None:intergenic	45.0%
	TGAAACACTAGCACTAGCAG+TGG	-	chr1_3:45838984-45839003	None:intergenic	45.0%
	TCCTGAGACCACAGGTTATA+TGG	+	chr1_3:45839006-45839025	Msa0120730:CDS	45.0%
	CCTGAGACCACAGGTTATAT+GGG	+	chr1_3:45839007-45839026	Msa0120730:CDS	45.0%
	ATCTCCACCCATATAACCTG+TGG	-	chr1_3:45839017-45839036	None:intergenic	45.0%
	GGCATGATGGTAAGCATTAC+AGG	+	chr1_3:45840387-45840406	Msa0120730:CDS	45.0%
	TGTGAAGACACTTGAGGACA+AGG	+	chr1_3:45840727-45840746	Msa0120730:CDS	45.0%
	GACACTTGAGGACAAGGAAA+AGG	+	chr1_3:45840733-45840752	Msa0120730:CDS	45.0%
	TTGAGGACAAGGAAAAGGAG+AGG	+	chr1_3:45840738-45840757	Msa0120730:CDS	45.0%
	TGAGGACAAGGAAAAGGAGA+GGG	+	chr1_3:45840739-45840758	Msa0120730:CDS	45.0%
	CGTTAAGAGAAGAAGAGTGG+AGG	+	chr1_3:45840762-45840781	Msa0120730:CDS	45.0%
	AGAAGAGTGGAGGAAACAAG+AGG	+	chr1_3:45840772-45840791	Msa0120730:CDS	45.0%
	GAGGAAACAAGAGGCCAAAA+GGG	+	chr1_3:45840781-45840800	Msa0120730:CDS	45.0%
!	AGAGAGCATGGATTGAAGCA+AGG	+	chr1_3:45840834-45840853	Msa0120730:CDS	45.0%
!	GAGAGCATGGATTGAAGCAA+GGG	+	chr1_3:45840835-45840854	Msa0120730:CDS	45.0%
!!	AGCAAGGGATGCTGCTTTAA+TGG	+	chr1_3:45840850-45840869	Msa0120730:CDS	45.0%
	GGAAGGAAACAGGAAGAGAA+AGG	+	chr1_3:45841048-45841067	Msa0120730:CDS	45.0%
	CCACCCTCACTAATCATGAA+AGG	-	chr1_3:45841244-45841263	None:intergenic	45.0%
	CCTTTCATGATTAGTGAGGG+TGG	+	chr1_3:45841241-45841260	Msa0120730:CDS	45.0%
!	CTAAAGAAGCATGAGGGGAA+AGG	-	chr1_3:45841732-45841751	None:intergenic	45.0%
!	GCACACTAAAGAAGCATGAG+GGG	-	chr1_3:45841737-45841756	None:intergenic	45.0%
!	CAGCACACTAAAGAAGCATG+AGG	-	chr1_3:45841739-45841758	None:intergenic	45.0%
!	GTACTGTGCATGCAGGTTTT+TGG	+	chr1_3:45841772-45841791	Msa0120730:three_prime_UTR	45.0%
	TTGTCAAAACTACGATGGCG+TGG	+	chr1_3:45841937-45841956	Msa0120730:three_prime_UTR	45.0%
	CATCGTTTGATCACCCCAAA+TGG	+	chr1_3:45842074-45842093	Msa0120730:three_prime_UTR	45.0%
!!	AAATAATTACATAAATAATT+AGG	-	chr1_3:45839195-45839214	None:intergenic	5.0%
	GATCCTGTCGTGCAGGAAAA+AGG	-	chr1_3:45838525-45838544	None:intergenic	50.0%
	GGAGAGAGTGAAGAAAGCAG+CGG	-	chr1_3:45838556-45838575	None:intergenic	50.0%
	GACAGCTGGTGAATGGAACA+AGG	+	chr1_3:45838726-45838745	Msa0120730:CDS	50.0%
	CCGTCGGTATAGATGGGAAA+TGG	-	chr1_3:45838757-45838776	None:intergenic	50.0%
	TTTCCCATCTATACCGACGG+CGG	+	chr1_3:45838757-45838776	Msa0120730:CDS	50.0%
!	GAGATGATGATGCTAGGTCG+TGG	+	chr1_3:45838881-45838900	Msa0120730:CDS	50.0%
	AACACTAGCACTAGCAGTGG+TGG	-	chr1_3:45838981-45839000	None:intergenic	50.0%
	GTTTCAACTCCTGAGACCAC+AGG	+	chr1_3:45838998-45839017	Msa0120730:CDS	50.0%
	CCCATATAACCTGTGGTCTC+AGG	-	chr1_3:45839010-45839029	None:intergenic	50.0%
	GAGACCACAGGTTATATGGG+TGG	+	chr1_3:45839010-45839029	Msa0120730:CDS	50.0%
	GAGATGCATCCACTGGAAGA+TGG	+	chr1_3:45839032-45839051	Msa0120730:CDS	50.0%
	TTGTCTTGGCCATCTTCCAG+TGG	-	chr1_3:45839044-45839063	None:intergenic	50.0%
	GTGGAAAAACGAGACAGTGG+TGG	-	chr1_3:45839673-45839692	None:intergenic	50.0%
!	GGTAAAGCAGGAAGGCATGA+TGG	+	chr1_3:45840374-45840393	Msa0120730:CDS	50.0%
	GATACGTCGTCGTCTGATGA+TGG	+	chr1_3:45840581-45840600	Msa0120730:CDS	50.0%
	GAAGCTTGTGGAGAAGCAAG+AGG	+	chr1_3:45840688-45840707	Msa0120730:CDS	50.0%
	TTGTGGAGAAGCAAGAGGAG+TGG	+	chr1_3:45840693-45840712	Msa0120730:CDS	50.0%
	GGGCGTTAAGAGAAGAAGAG+TGG	+	chr1_3:45840759-45840778	Msa0120730:CDS	50.0%
	GGAGGAAACAAGAGGCCAAA+AGG	+	chr1_3:45840780-45840799	Msa0120730:CDS	50.0%
	GAAACAAGAGGCCAAAAGGG+TGG	+	chr1_3:45840784-45840803	Msa0120730:CDS	50.0%
!	GAGCCTTTTTCCTGCACGAC+AGG	+	chr1_3:45838519-45838538	Msa0120730:five_prime_UTR	55.0%
	GAAGAAAGCAGCGGCAGAGT+CGG	-	chr1_3:45838547-45838566	None:intergenic	55.0%
	TAGCCGCCGTCGGTATAGAT+GGG	-	chr1_3:45838763-45838782	None:intergenic	55.0%
	ATCTATACCGACGGCGGCTA+CGG	+	chr1_3:45838763-45838782	Msa0120730:CDS	55.0%
	AGCTGTCAGATTCCGGTGAC+CGG	-	chr1_3:45838801-45838820	None:intergenic	55.0%
	ATGGGTGGAGATGCATCCAC+TGG	+	chr1_3:45839025-45839044	Msa0120730:CDS	55.0%
	AGAGTCGGATCCTGTCGTGC+AGG	-	chr1_3:45838532-45838551	None:intergenic	60.0%
	GTAGCCGCCGTCGGTATAGA+TGG	-	chr1_3:45838764-45838783	None:intergenic	60.0%
	AACTCATCCGTAGCCGCCGT+CGG	-	chr1_3:45838773-45838792	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	45838396	45842208	45838396	ID=Msa0120730;Name=Msa0120730
chr1_3	mRNA	45838396	45842208	45838396	ID=Msa0120730-mRNA-1;Parent=Msa0120730;Name=Msa0120730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=269\|1\|1\|1\|1\|1\|2\|890\|509
chr1_3	exon	45838396	45839155	45838396	ID=Msa0120730-mRNA-1:exon:13721;Parent=Msa0120730-mRNA-1
chr1_3	exon	45840280	45842208	45840280	ID=Msa0120730-mRNA-1:exon:13722;Parent=Msa0120730-mRNA-1
chr1_3	five_prime_UTR	45838396	45838664	45838396	ID=Msa0120730-mRNA-1:five_prime_utr;Parent=Msa0120730-mRNA-1
chr1_3	CDS	45838665	45839155	45838665	ID=Msa0120730-mRNA-1:cds;Parent=Msa0120730-mRNA-1
chr1_3	CDS	45840280	45841318	45840280	ID=Msa0120730-mRNA-1:cds;Parent=Msa0120730-mRNA-1
chr1_3	three_prime_UTR	45841319	45842208	45841319	ID=Msa0120730-mRNA-1:three_prime_utr;Parent=Msa0120730-mRNA-1

Gene Sequence

>Msa0120730

ATGGATGACCACCATAACAATCATGGTCATCACCATCACCATCAACAACAATATGATCTAAGACAGCTGGTGAATGGAACAAGGTCAACCCATTTCCCATCTATACCGACGGCGGCTACGGATGAGTTTTTCTCCGGTCACCGGAATCTGACAGCTTTGTTAACTACTACTCATCCTAATCCACAGACACATCAAAACCAACAACAACAACAGTATGAGATGATGATGCTAGGTCGTGGAGTAGTTCTTGAAGATTTTAATAGCATCACTACTCATGTACCACCACCACCTTCAACAACAATAACAACAACAACCACCACTGCTAGTGCTAGTGTTTCAACTCCTGAGACCACAGGTTATATGGGTGGAGATGCATCCACTGGAAGATGGCCAAGACAAGAAACTCTTACTCTTCTTGAAATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAAGGTCCTTTATGGGATGAAGTCTCTAGGATAATGTCTGAAGAACATGGATATCAAAGGAGTGGAAAAAAGTGCAGAGAAAAATTTGAGAATCTGTACAAATATTATAAGAAGACAAAAGAAGGTAAAGCAGGAAGGCATGATGGTAAGCATTACAGGTTTTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTCTACCAGAAACCAATTTTGTCAACAACAATAATTTCCATTTCCAACAAACAAGTAATAGCCAAAACCCTCACAATGATCATAGCCTTAGTCTCACTACTAACTCAACTGACTTTGAAATCGATACGTCGTCGTCTGATGATGGCAATGATGTGAAGGGAAAGAAGAAGAGTAGTGGAAGAAGAAGTTGGAAGGTGAAGATAAAAGACTTCATTGATGCACAAATGAAGAAGCTTGTGGAGAAGCAAGAGGAGTGGTTGAGTAAGCTTGTGAAGACACTTGAGGACAAGGAAAAGGAGAGGGCGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGCCAAAAGGGTGGAAAAAGAACAAAAGTTTTGGAGTAATGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATTTAGGAGGTAGAGAAATGATTAAGGTTGAAGAAGCTCATGATCATAAGGGTGTAAATGGAATAACTGGAGCAGAGATTCAAAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTACTGTGAGAGGTTCTGATAATTGTACTCTAAGGGATGATTCTAAGGAAGGAAACAGGAAGAGAAAGGAGAGTTTTTACTTCAACAATAATGAACAATGTTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATGATCAAAGAGAGGAGATTGTGAAACTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTAGCTAATGGTGATACTTGCTTTCCTTTCATGATTAGTGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAGATCAATAAAGTAAACCAAAACCATTAA

Protein sequence

>Msa0120730

MDDHHNNHGHHHHHQQQYDLRQLVNGTRSTHFPSIPTAATDEFFSGHRNLTALLTTTHPNPQTHQNQQQQQYEMMMLGRGVVLEDFNSITTHVPPPPSTTITTTTTTASASVSTPETTGYMGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSLPETNFVNNNNFHFQQTSNSQNPHNDHSLSLTTNSTDFEIDTSSSDDGNDVKGKKKSSGRRSWKVKIKDFIDAQMKKLVEKQEEWLSKLVKTLEDKEKERALREEEWRKQEAKRVEKEQKFWSNERAWIEARDAALMEALKNLGGREMIKVEEAHDHKGVNGITGAEIQNQNEDGSEILNSTVRGSDNCTLRDDSKEGNRKRKESFYFNNNEQCSMYNQGSGYCDVNDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFMISEGGNLWENFGLKINKVNQNH*