Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401150 | XP_024632051.1 | 97.537 | 203 | 5 | 0 | 1 | 203 | 1 | 203 | 3.81e-144 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401150 | A0A396JGY9 | 97.537 | 203 | 5 | 0 | 1 | 203 | 1 | 203 | 1.82e-144 | 416 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa1401150 | 0.824583 | 7.461195e-54 | -8.615850e-47 |
| Msa0017510 | Msa1401150 | 0.819560 | 1.089351e-52 | -8.615850e-47 |
| Msa0036430 | Msa1401150 | 0.801119 | 1.046493e-48 | -8.615850e-47 |
| Msa0036960 | Msa1401150 | 0.805937 | 1.048998e-49 | -8.615850e-47 |
| Msa0051790 | Msa1401150 | 0.808631 | 2.816946e-50 | -8.615850e-47 |
| Msa0072370 | Msa1401150 | 0.834409 | 3.047900e-56 | -8.615850e-47 |
| Msa0095540 | Msa1401150 | 0.818809 | 1.614946e-52 | -8.615850e-47 |
| Msa0110970 | Msa1401150 | 0.803022 | 4.250490e-49 | -8.615850e-47 |
| Msa0112750 | Msa1401150 | 0.807997 | 3.845553e-50 | -8.615850e-47 |
| Msa1353060 | Msa1401150 | 0.844612 | 6.786985e-59 | -8.615850e-47 |
| Msa1356440 | Msa1401150 | 0.806171 | 9.363198e-50 | -8.615850e-47 |
| Msa1370090 | Msa1401150 | 0.806633 | 7.480668e-50 | -8.615850e-47 |
| Msa1385670 | Msa1401150 | 0.805789 | 1.126844e-49 | -8.615850e-47 |
| Msa1395870 | Msa1401150 | 0.811282 | 7.569786e-51 | -8.615850e-47 |
| Msa1397250 | Msa1401150 | 0.946567 | 3.607081e-105 | -8.615850e-47 |
| Msa1399560 | Msa1401150 | 0.818597 | 1.803874e-52 | -8.615850e-47 |
| Msa1401150 | Msa1443840 | 0.825789 | 3.870085e-54 | -8.615850e-47 |
| Msa1401150 | Msa1460380 | 0.814136 | 1.796289e-51 | -8.615850e-47 |
| Msa1401150 | Msa1460390 | 0.839633 | 1.410060e-57 | -8.615850e-47 |
| Msa0609430 | Msa1401150 | 0.852951 | 3.295204e-61 | -8.615850e-47 |
| Msa0611380 | Msa1401150 | 0.851328 | 9.535934e-61 | -8.615850e-47 |
| Msa0619990 | Msa1401150 | 0.819620 | 1.055283e-52 | -8.615850e-47 |
| Msa0628640 | Msa1401150 | 0.824539 | 7.640922e-54 | -8.615850e-47 |
| Msa0631120 | Msa1401150 | 0.863307 | 2.732386e-64 | -8.615850e-47 |
| Msa0644980 | Msa1401150 | 0.807537 | 4.815142e-50 | -8.615850e-47 |
| Msa0647980 | Msa1401150 | 0.817314 | 3.515822e-52 | -8.615850e-47 |
| Msa0650070 | Msa1401150 | 0.827554 | 1.467097e-54 | -8.615850e-47 |
| Msa0662500 | Msa1401150 | 0.800294 | 1.541640e-48 | -8.615850e-47 |
| Msa0666030 | Msa1401150 | 0.843246 | 1.576391e-58 | -8.615850e-47 |
| Msa0669340 | Msa1401150 | 0.870446 | 1.450210e-66 | -8.615850e-47 |
| Msa0684500 | Msa1401150 | 0.846408 | 2.213610e-59 | -8.615850e-47 |
| Msa0692060 | Msa1401150 | 0.836147 | 1.109653e-56 | -8.615850e-47 |
| Msa0706420 | Msa1401150 | 0.815741 | 7.915467e-52 | -8.615850e-47 |
| Msa0709500 | Msa1401150 | 0.822370 | 2.456972e-53 | -8.615850e-47 |
| Msa0716450 | Msa1401150 | 0.837607 | 4.703014e-57 | -8.615850e-47 |
| Msa0717260 | Msa1401150 | 0.852774 | 3.702530e-61 | -8.615850e-47 |
| Msa0750880 | Msa1401150 | 0.843569 | 1.293050e-58 | -8.615850e-47 |
| Msa0758320 | Msa1401150 | 0.844548 | 7.063694e-59 | -8.615850e-47 |
| Msa0761940 | Msa1401150 | 0.809018 | 2.328449e-50 | -8.615850e-47 |
| Msa0775440 | Msa1401150 | 0.818194 | 2.225559e-52 | -8.615850e-47 |
| Msa0790850 | Msa1401150 | 0.813993 | 1.931697e-51 | -8.615850e-47 |
| Msa0799030 | Msa1401150 | 0.818089 | 2.351596e-52 | -8.615850e-47 |
| Msa0799700 | Msa1401150 | 0.809186 | 2.143069e-50 | -8.615850e-47 |
| Msa0803890 | Msa1401150 | 0.808926 | 2.436044e-50 | -8.615850e-47 |
| Msa0812820 | Msa1401150 | 0.840330 | 9.277399e-58 | -8.615850e-47 |
| Msa0837440 | Msa1401150 | 0.823472 | 1.359994e-53 | -8.615850e-47 |
| Msa0837980 | Msa1401150 | 0.842615 | 2.320682e-58 | -8.615850e-47 |
| Msa0120730 | Msa1401150 | 0.821549 | 3.806930e-53 | -8.615850e-47 |
| Msa0141100 | Msa1401150 | 0.859025 | 5.500014e-63 | -8.615850e-47 |
| Msa0157290 | Msa1401150 | 0.819460 | 1.148154e-52 | -8.615850e-47 |
| Msa0163980 | Msa1401150 | 0.818608 | 1.793456e-52 | -8.615850e-47 |
| Msa0172450 | Msa1401150 | 0.809323 | 2.002755e-50 | -8.615850e-47 |
| Msa0191040 | Msa1401150 | 0.837747 | 4.329882e-57 | -8.615850e-47 |
| Msa0197930 | Msa1401150 | 0.821578 | 3.747260e-53 | -8.615850e-47 |
| Msa0205850 | Msa1401150 | 0.802809 | 4.702942e-49 | -8.615850e-47 |
| Msa0220300 | Msa1401150 | 0.806878 | 6.642166e-50 | -8.615850e-47 |
| Msa0225600 | Msa1401150 | 0.945628 | 2.138358e-104 | -8.615850e-47 |
| Msa0233340 | Msa1401150 | 0.837939 | 3.866549e-57 | -8.615850e-47 |
| Msa0236440 | Msa1401150 | 0.825037 | 5.830951e-54 | -8.615850e-47 |
| Msa1227970 | Msa1401150 | 0.802500 | 5.446621e-49 | -8.615850e-47 |
| Msa1251160 | Msa1401150 | 0.800967 | 1.124234e-48 | -8.615850e-47 |
| Msa1254700 | Msa1401150 | 0.844009 | 9.858031e-59 | -8.615850e-47 |
| Msa1255040 | Msa1401150 | -0.806271 | 8.919831e-50 | -8.615850e-47 |
| Msa1255280 | Msa1401150 | 0.831069 | 2.056871e-55 | -8.615850e-47 |
| Msa1258050 | Msa1401150 | 0.808419 | 3.126133e-50 | -8.615850e-47 |
| Msa1266960 | Msa1401150 | 0.815973 | 7.023635e-52 | -8.615850e-47 |
| Msa1291870 | Msa1401150 | 0.823668 | 1.223825e-53 | -8.615850e-47 |
| Msa1300870 | Msa1401150 | 0.808262 | 3.377419e-50 | -8.615850e-47 |
| Msa1303250 | Msa1401150 | 0.814322 | 1.634116e-51 | -8.615850e-47 |
| Msa1316780 | Msa1401150 | 0.804103 | 2.536375e-49 | -8.615850e-47 |
| Msa1331910 | Msa1401150 | 0.803679 | 3.106951e-49 | -8.615850e-47 |
| Msa1342900 | Msa1401150 | 0.806488 | 8.030298e-50 | -8.615850e-47 |
| Msa0374850 | Msa1401150 | 0.856874 | 2.395501e-62 | -8.615850e-47 |
| Msa0375090 | Msa1401150 | 0.852702 | 3.880893e-61 | -8.615850e-47 |
| Msa0461730 | Msa1401150 | 0.803508 | 3.371487e-49 | -8.615850e-47 |
| Msa0470340 | Msa1401150 | 0.851625 | 7.855369e-61 | -8.615850e-47 |
| Msa0470860 | Msa1401150 | 0.815913 | 7.246463e-52 | -8.615850e-47 |
| Msa0480950 | Msa1401150 | 0.805848 | 1.094657e-49 | -8.615850e-47 |
| Msa0481110 | Msa1401150 | 0.828141 | 1.060137e-54 | -8.615850e-47 |
| Msa1002620 | Msa1401150 | 0.820637 | 6.172788e-53 | -8.615850e-47 |
| Msa1003750 | Msa1401150 | 0.819133 | 1.362624e-52 | -8.615850e-47 |
| Msa1013400 | Msa1401150 | 0.823060 | 1.697657e-53 | -8.615850e-47 |
| Msa1040400 | Msa1401150 | 0.823471 | 1.360558e-53 | -8.615850e-47 |
| Msa1081150 | Msa1401150 | 0.809896 | 1.508363e-50 | -8.615850e-47 |
| Msa1082500 | Msa1401150 | 0.803379 | 3.586089e-49 | -8.615850e-47 |
| Msa1083150 | Msa1401150 | 0.818517 | 1.881336e-52 | -8.615850e-47 |
| Msa1093530 | Msa1401150 | 0.814242 | 1.701841e-51 | -8.615850e-47 |
| Msa1093840 | Msa1401150 | 0.817953 | 2.523141e-52 | -8.615850e-47 |
| Msa0240150 | Msa1401150 | 0.801399 | 9.172117e-49 | -8.615850e-47 |
| Msa0251240 | Msa1401150 | 0.820149 | 7.989116e-53 | -8.615850e-47 |
| Msa0266450 | Msa1401150 | 0.964961 | 5.445380e-124 | -8.615850e-47 |
| Msa0282210 | Msa1401150 | 0.808809 | 2.580611e-50 | -8.615850e-47 |
| Msa0287650 | Msa1401150 | 0.811676 | 6.214944e-51 | -8.615850e-47 |
| Msa0309350 | Msa1401150 | 0.801076 | 1.068102e-48 | -8.615850e-47 |
| Msa0311690 | Msa1401150 | 0.823199 | 1.574817e-53 | -8.615850e-47 |
| Msa0333920 | Msa1401150 | 0.801532 | 8.613768e-49 | -8.615850e-47 |
| Msa0333930 | Msa1401150 | 0.801607 | 8.312074e-49 | -8.615850e-47 |
| Msa0337540 | Msa1401150 | 0.829987 | 3.784639e-55 | -8.615850e-47 |
| Msa1113850 | Msa1401150 | 0.801190 | 1.011965e-48 | -8.615850e-47 |
| Msa1125760 | Msa1401150 | 0.838240 | 3.234442e-57 | -8.615850e-47 |
| Msa1140690 | Msa1401150 | 0.807325 | 5.340145e-50 | -8.615850e-47 |
| Msa1147900 | Msa1401150 | 0.830925 | 2.231836e-55 | -8.615850e-47 |
| Msa1151910 | Msa1401150 | 0.806446 | 8.192691e-50 | -8.615850e-47 |
| Msa1171360 | Msa1401150 | 0.819981 | 8.728242e-53 | -8.615850e-47 |
| Msa1172450 | Msa1401150 | 0.818454 | 1.944063e-52 | -8.615850e-47 |
| Msa1172670 | Msa1401150 | 0.835812 | 1.349427e-56 | -8.615850e-47 |
| Msa1179460 | Msa1401150 | 0.818850 | 1.580563e-52 | -8.615850e-47 |
| Msa1197590 | Msa1401150 | 0.834403 | 3.058651e-56 | -8.615850e-47 |
| Msa1201890 | Msa1401150 | 0.804573 | 2.024485e-49 | -8.615850e-47 |
| Msa1203000 | Msa1401150 | 0.829756 | 4.308608e-55 | -8.615850e-47 |
| Msa1205960 | Msa1401150 | 0.816157 | 6.389933e-52 | -8.615850e-47 |
| Msa1207270 | Msa1401150 | 0.805518 | 1.284264e-49 | -8.615850e-47 |
| Msa1214890 | Msa1401150 | 0.800107 | 1.683337e-48 | -8.615850e-47 |
| Msa1217940 | Msa1401150 | 0.846720 | 1.819468e-59 | -8.615850e-47 |
| Msa1218480 | Msa1401150 | 0.811342 | 7.343803e-51 | -8.615850e-47 |
| Msa1218600 | Msa1401150 | 0.838256 | 3.204474e-57 | -8.615850e-47 |
| Msa1219260 | Msa1401150 | 0.824949 | 6.115784e-54 | -8.615850e-47 |
| Msa0484780 | Msa1401150 | 0.818266 | 2.144239e-52 | -8.615850e-47 |
| Msa0523460 | Msa1401150 | 0.801112 | 1.050088e-48 | -8.615850e-47 |
| Msa0531430 | Msa1401150 | 0.868636 | 5.633473e-66 | -8.615850e-47 |
| Msa0532710 | Msa1401150 | 0.806981 | 6.316869e-50 | -8.615850e-47 |
| Msa0534570 | Msa1401150 | 0.809433 | 1.896445e-50 | -8.615850e-47 |
| Msa0534590 | Msa1401150 | 0.871682 | 5.672448e-67 | -8.615850e-47 |
| Msa0547720 | Msa1401150 | 0.806329 | 8.670803e-50 | -8.615850e-47 |
| Msa0548620 | Msa1401150 | 0.837536 | 4.905807e-57 | -8.615850e-47 |
| Msa0548660 | Msa1401150 | 0.844142 | 9.076951e-59 | -8.615850e-47 |
| Msa0551890 | Msa1401150 | 0.810721 | 1.001259e-50 | -8.615850e-47 |
| Msa0590800 | Msa1401150 | 0.856130 | 3.960295e-62 | -8.615850e-47 |
| Msa0853320 | Msa1401150 | 0.828756 | 7.532474e-55 | -8.615850e-47 |
| Msa0876200 | Msa1401150 | 0.803273 | 3.771213e-49 | -8.615850e-47 |
| Msa0880140 | Msa1401150 | 0.819492 | 1.128868e-52 | -8.615850e-47 |
| Msa0880710 | Msa1401150 | 0.802590 | 5.220314e-49 | -8.615850e-47 |
| Msa0902760 | Msa1401150 | 0.814371 | 1.593868e-51 | -8.615850e-47 |
| Msa0933310 | Msa1401150 | 0.808012 | 3.817824e-50 | -8.615850e-47 |
| Msa0968590 | Msa1401150 | 0.821696 | 3.519939e-53 | -8.615850e-47 |
| Msa0970030 | Msa1401150 | 0.808361 | 3.215666e-50 | -8.615850e-47 |
| Msa0971090 | Msa1401150 | 0.800281 | 1.551639e-48 | -8.615850e-47 |
| Msa0979510 | Msa1401150 | 0.802082 | 6.642390e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401150 | MtrunA17_Chr2g0331861 | 97.537 | 203 | 5 | 0 | 1 | 203 | 1 | 203 | 3.50e-148 | 416 |
| Msa1401150 | MtrunA17_Chr6g0485381 | 35.556 | 180 | 106 | 3 | 41 | 214 | 71 | 246 | 1.04e-32 | 122 |
| Msa1401150 | MtrunA17_Chr4g0004451 | 36.496 | 137 | 86 | 1 | 41 | 177 | 27 | 162 | 1.83e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401150 | AT1G52330.1 | 54.902 | 153 | 69 | 0 | 48 | 200 | 59 | 211 | 9.92e-61 | 194 |
| Msa1401150 | AT1G52330.2 | 52.985 | 134 | 63 | 0 | 48 | 181 | 59 | 192 | 1.14e-48 | 164 |
| Msa1401150 | AT4G13270.1 | 42.604 | 169 | 97 | 0 | 32 | 200 | 44 | 212 | 2.80e-44 | 152 |
Find 99 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCAGCTCTTCAATTT+TGG | 0.128265 | tig0022500:+37712 | None:intergenic |
| AAGAAAATGATTTACCTTAA+TGG | 0.212531 | tig0022500:+42278 | None:intergenic |
| TGAATTTGATGATTGATTAT+TGG | 0.230329 | tig0022500:+42912 | None:intergenic |
| AGAAAATGATTTACCTTAAT+GGG | 0.264332 | tig0022500:+42279 | None:intergenic |
| TAAACTATCATGTGCGGTTT+TGG | 0.284881 | tig0022500:-42134 | Msa1401150:CDS |
| TAGTCAAGTTAGGGGCAAAA+TGG | 0.292543 | tig0022500:-42322 | Msa1401150:CDS |
| AACATAGACACGTACAAATT+AGG | 0.320312 | tig0022500:-42963 | Msa1401150:five_prime_UTR |
| ATAATTCTGATGAAGAATTA+TGG | 0.326945 | tig0022500:-39221 | Msa1401150:CDS |
| CGCGTTCCTGAAGTAGTTCC+TGG | 0.331512 | tig0022500:+37348 | None:intergenic |
| TTGATACGGTTAGTCAAGTT+AGG | 0.332171 | tig0022500:-42332 | Msa1401150:CDS |
| GTTGAAGCTGAAGAAGATTA+AGG | 0.365406 | tig0022500:-42622 | Msa1401150:CDS |
| ATTATATTCCATTCTTGAAA+TGG | 0.366927 | tig0022500:+39239 | None:intergenic |
| TGAATCCACAAAGCAGCGTT+TGG | 0.384724 | tig0022500:-37684 | Msa1401150:CDS |
| TTAGTATATTTCAATGGAGT+TGG | 0.388212 | tig0022500:-37313 | Msa1401150:exon |
| TTGATGATTGATTATTGGTT+TGG | 0.395304 | tig0022500:+42917 | None:intergenic |
| AGTCAAGTTAGGGGCAAAAT+GGG | 0.396713 | tig0022500:-42321 | Msa1401150:CDS |
| ACTGTTATATTTCTCGCTTA+AGG | 0.400511 | tig0022500:+37619 | None:intergenic |
| TCTGATCCAGGAACTACTTC+AGG | 0.411288 | tig0022500:-37354 | Msa1401150:CDS |
| TGGTTTGGTGTAGGAAATTG+TGG | 0.419400 | tig0022500:+42932 | None:intergenic |
| AACTCCATTGAAATATACTA+AGG | 0.440384 | tig0022500:+37315 | None:intergenic |
| GAATGGGCACGTGAGGGCTA+TGG | 0.456284 | tig0022500:-42454 | Msa1401150:CDS |
| TGATACGGTTAGTCAAGTTA+GGG | 0.457996 | tig0022500:-42331 | Msa1401150:CDS |
| GGCTATGGGATCTTCATTTG+TGG | 0.458085 | tig0022500:-42439 | Msa1401150:CDS |
| CCTCATGAAGACAGTGTTGA+CGG | 0.462375 | tig0022500:+42086 | None:intergenic |
| CCCGTCCCAGAGTCTGATCC+AGG | 0.463701 | tig0022500:-37366 | Msa1401150:CDS |
| GCAAGCAGCCATTTCAAGAA+TGG | 0.468277 | tig0022500:-39247 | Msa1401150:CDS |
| TCCAACAACAACACTATCTC+AGG | 0.473538 | tig0022500:+42381 | None:intergenic |
| GGCACGTGACTTCGAAGAAT+GGG | 0.476369 | tig0022500:-42470 | Msa1401150:CDS |
| ACCTGAGATAGTGTTGTTGT+TGG | 0.476726 | tig0022500:-42382 | Msa1401150:CDS |
| AATGGGCACGTGAGGGCTAT+GGG | 0.477387 | tig0022500:-42453 | Msa1401150:CDS |
| AAATGTTGACGTTTATTCCA+TGG | 0.481008 | tig0022500:-42541 | Msa1401150:CDS |
| ACTTCCAGCTCTGACAACTT+TGG | 0.488730 | tig0022500:+37764 | None:intergenic |
| ACGGGGACTCCGATCGGAGG+TGG | 0.488905 | tig0022500:+37384 | None:intergenic |
| TGGTGGTGAATAAGAGTAAG+AGG | 0.489310 | tig0022500:+42688 | None:intergenic |
| AAATCCTTAGTATATTTCAA+TGG | 0.494490 | tig0022500:-37319 | Msa1401150:exon |
| GTAGTTCCTGGATCAGACTC+TGG | 0.494492 | tig0022500:+37360 | None:intergenic |
| GGGCACGTGACTTCGAAGAA+TGG | 0.502859 | tig0022500:-42471 | Msa1401150:CDS |
| GTTGTTGGAGGACCTTGCTA+AGG | 0.507070 | tig0022500:-42367 | Msa1401150:CDS |
| GATGCAGAATTCAGTGGTAT+TGG | 0.514947 | tig0022500:-42411 | Msa1401150:CDS |
| CCTGGATCAGACTCTGGGAC+GGG | 0.515585 | tig0022500:+37366 | None:intergenic |
| AGAACCAAAGTTGTCAGAGC+TGG | 0.517038 | tig0022500:-37768 | Msa1401150:CDS |
| GACGTTTATTCCATGGACTT+TGG | 0.517964 | tig0022500:-42534 | Msa1401150:CDS |
| AACCGTACGATCTTGAGGTA+TGG | 0.521084 | tig0022500:+42642 | None:intergenic |
| AGCAGCGTTTGGAAAAGAAA+GGG | 0.528574 | tig0022500:-37673 | Msa1401150:CDS |
| ATTGATTATTGGTTTGGTGT+AGG | 0.532500 | tig0022500:+42923 | None:intergenic |
| TCTTATAGAGGGAAACCACT+TGG | 0.536597 | tig0022500:-42492 | Msa1401150:CDS |
| ATCGGAGGTGGTCTTGAAGA+TGG | 0.536628 | tig0022500:+37396 | None:intergenic |
| TCTGGGACGGGGACTCCGAT+CGG | 0.537597 | tig0022500:+37378 | None:intergenic |
| ACACTTACACACATCTCCTA+TGG | 0.538130 | tig0022500:-42782 | Msa1401150:CDS |
| AAGCAGCGTTTGGAAAAGAA+AGG | 0.541865 | tig0022500:-37674 | Msa1401150:CDS |
| GGGTATGATACCCTTTGATA+CGG | 0.543076 | tig0022500:-42346 | Msa1401150:CDS |
| TGAGATAGTGTTGTTGTTGG+AGG | 0.545985 | tig0022500:-42379 | Msa1401150:CDS |
| CTGGATCAGACTCTGGGACG+GGG | 0.547882 | tig0022500:+37367 | None:intergenic |
| CTTCGAAGAATGGGCACGTG+AGG | 0.549210 | tig0022500:-42461 | Msa1401150:CDS |
| ACGTGCATGTAACTCGAAAA+CGG | 0.551303 | tig0022500:+42715 | None:intergenic |
| TTGTTGGAGGACCTTGCTAA+GGG | 0.551961 | tig0022500:-42366 | Msa1401150:CDS |
| CACTCTCAACGTGAAGAGCA+TGG | 0.555106 | tig0022500:+42566 | None:intergenic |
| GATAGGTGGTGATGCTCTCA+AGG | 0.556282 | tig0022500:+37434 | None:intergenic |
| GTCAACAGCACCAAAGTCCA+TGG | 0.556982 | tig0022500:+42524 | None:intergenic |
| AACTTGACTAACCGTATCAA+AGG | 0.559559 | tig0022500:+42335 | None:intergenic |
| ACTTGACTAACCGTATCAAA+GGG | 0.561858 | tig0022500:+42336 | None:intergenic |
| GGTGTTGGTTGAAAGTAGAT+AGG | 0.562879 | tig0022500:+37417 | None:intergenic |
| ATCCATACCTCAAGATCGTA+CGG | 0.564124 | tig0022500:-42644 | Msa1401150:CDS |
| GCTTCAACCGTACGATCTTG+AGG | 0.564157 | tig0022500:+42637 | None:intergenic |
| ATCTTGAGGTATGGATCTGA+CGG | 0.564383 | tig0022500:+42651 | None:intergenic |
| CATGCTCTTCACGTTGAGAG+TGG | 0.566163 | tig0022500:-42565 | Msa1401150:CDS |
| GACGTGGCGGTATCTTATAG+AGG | 0.568477 | tig0022500:-42504 | Msa1401150:CDS |
| TACGAGGTTGGCATGGCCAT+AGG | 0.577314 | tig0022500:+42766 | None:intergenic |
| TTCGAAGTCACGTGCCCAAG+TGG | 0.585354 | tig0022500:+42477 | None:intergenic |
| GAAATATAACAGTGTTAGAG+AGG | 0.588321 | tig0022500:-37609 | Msa1401150:CDS |
| TGATCTGTACGAGGTTGGCA+TGG | 0.590247 | tig0022500:+42759 | None:intergenic |
| GGGACGGGGACTCCGATCGG+AGG | 0.591662 | tig0022500:+37381 | None:intergenic |
| GAGTTTGATCTGTACGAGGT+TGG | 0.594207 | tig0022500:+42754 | None:intergenic |
| GGTGGTCTTGAAGATGGTGT+TGG | 0.596345 | tig0022500:+37402 | None:intergenic |
| CTTATAGAGGGAAACCACTT+GGG | 0.598189 | tig0022500:-42491 | Msa1401150:CDS |
| TCCTGGATCAGACTCTGGGA+CGG | 0.598644 | tig0022500:+37365 | None:intergenic |
| TAGTTCCTGGATCAGACTCT+GGG | 0.601819 | tig0022500:+37361 | None:intergenic |
| TTCGAAGAATGGGCACGTGA+GGG | 0.610158 | tig0022500:-42460 | Msa1401150:CDS |
| GAAGAGCATGGAGATATCTA+CGG | 0.612242 | tig0022500:+42578 | None:intergenic |
| CGTGAGCTCTCTCAATGCAA+TGG | 0.617999 | tig0022500:-39198 | Msa1401150:CDS |
| GATACGGTTAGTCAAGTTAG+GGG | 0.618576 | tig0022500:-42330 | Msa1401150:CDS |
| GGACTTTGGTGCTGTTGACG+TGG | 0.632167 | tig0022500:-42520 | Msa1401150:CDS |
| TCTTCAAGACCACCTCCGAT+CGG | 0.639349 | tig0022500:-37393 | Msa1401150:CDS |
| AGGGTATCATACCCTTAGCA+AGG | 0.651835 | tig0022500:+42355 | None:intergenic |
| CCGTCAACACTGTCTTCATG+AGG | 0.652674 | tig0022500:-42086 | Msa1401150:intron |
| GAGATATCTACGGTGATATG+CGG | 0.652943 | tig0022500:+42588 | None:intergenic |
| ACGTGGCGGTATCTTATAGA+GGG | 0.653035 | tig0022500:-42503 | Msa1401150:CDS |
| GAGCTCTCTCAATGCAATGG+TGG | 0.653924 | tig0022500:-39195 | Msa1401150:intron |
| GTCAAGTTAGGGGCAAAATG+GGG | 0.655267 | tig0022500:-42320 | Msa1401150:CDS |
| ATAGGCTAAACTATCATGTG+CGG | 0.659678 | tig0022500:-42140 | Msa1401150:intron |
| GCAGCGTTTGGAAAAGAAAG+GGG | 0.660036 | tig0022500:-37672 | Msa1401150:CDS |
| TGACGGATAGAAAATATACA+TGG | 0.674941 | tig0022500:+42668 | None:intergenic |
| TTTGGTGTAGGAAATTGTGG+TGG | 0.676954 | tig0022500:+42935 | None:intergenic |
| CTTTGGTGCTGTTGACGTGG+CGG | 0.678358 | tig0022500:-42517 | Msa1401150:CDS |
| CAGCGTTTGGAAAAGAAAGG+GGG | 0.692657 | tig0022500:-37671 | Msa1401150:CDS |
| GATGCTGATGCAGAATTCAG+TGG | 0.701186 | tig0022500:-42417 | Msa1401150:CDS |
| CGGATAGAAAATATACATGG+TGG | 0.703288 | tig0022500:+42671 | None:intergenic |
| GTTGGTTGAAAGTAGATAGG+TGG | 0.718597 | tig0022500:+37420 | None:intergenic |
| ACGTGAGTTTGATCTGTACG+AGG | 0.736583 | tig0022500:+42750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATAATTTGAGTT+AGG | - | tig0022500:38062-38081 | Msa1401150:intron | 10.0% |
| !! | ATATGATTTATAATCATAAT+TGG | - | tig0022500:39008-39027 | Msa1401150:intron | 10.0% |
| !!! | TTCATATATTTTAACATAAT+CGG | + | tig0022500:40625-40644 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTTTCATTTTATT+AGG | - | tig0022500:40988-41007 | Msa1401150:intron | 10.0% |
| !!! | TTTTTCTTTTCATTTTATTA+GGG | - | tig0022500:40989-41008 | Msa1401150:intron | 10.0% |
| !!! | TTTAATTTGTGATTAATATT+GGG | - | tig0022500:41793-41812 | Msa1401150:intron | 10.0% |
| !!! | ATTTCAAAATATTTTGAATT+TGG | + | tig0022500:41905-41924 | None:intergenic | 10.0% |
| !! | ATGATTAAACTTATAAATTG+TGG | - | tig0022500:40490-40509 | Msa1401150:intron | 15.0% |
| !! | TGATTAAACTTATAAATTGT+GGG | - | tig0022500:40491-40510 | Msa1401150:intron | 15.0% |
| !! | AAAAATAAGAAGATATTTGA+AGG | - | tig0022500:40519-40538 | Msa1401150:intron | 15.0% |
| !!! | AAAAAACGATTTTTAATTGT+TGG | - | tig0022500:40706-40725 | Msa1401150:intron | 15.0% |
| !! | AAAAAATAATAAGAAGACAA+TGG | + | tig0022500:41116-41135 | None:intergenic | 15.0% |
| !!! | TATTTTTTTTTCAAAGAGAA+TGG | + | tig0022500:41229-41248 | None:intergenic | 15.0% |
| !!! | ATTCTCTTTGAAAAAAAAAT+AGG | - | tig0022500:41228-41247 | Msa1401150:intron | 15.0% |
| !!! | ATTTGAAAGTACTTTTAATT+TGG | - | tig0022500:41336-41355 | Msa1401150:intron | 15.0% |
| !!! | TGTGAGTTTTTTTTTTAAAT+TGG | - | tig0022500:41397-41416 | Msa1401150:intron | 15.0% |
| !! | GTCTTAGAAATTATTATTTA+GGG | - | tig0022500:41677-41696 | Msa1401150:intron | 15.0% |
| !! | TTCAAAAAAGTAAAATCATT+GGG | + | tig0022500:41748-41767 | None:intergenic | 15.0% |
| !! | TTTCAAAAAAGTAAAATCAT+TGG | + | tig0022500:41749-41768 | None:intergenic | 15.0% |
| !!! | GTTTAATTTGTGATTAATAT+TGG | - | tig0022500:41792-41811 | Msa1401150:intron | 15.0% |
| !!! | TTAATTTGTGATTAATATTG+GGG | - | tig0022500:41794-41813 | Msa1401150:intron | 15.0% |
| !!! | AAAATATTTTGAAATTGCAA+GGG | - | tig0022500:41910-41929 | Msa1401150:intron | 15.0% |
| !! | ATAGTAAATGGTTAAAATTA+AGG | + | tig0022500:42382-42401 | None:intergenic | 15.0% |
| !!! | TGAATTTGATGATTGATTAT+TGG | + | tig0022500:37356-37375 | None:intergenic | 20.0% |
| !! | AGAAAATGATTTACCTTAAT+GGG | + | tig0022500:37989-38008 | None:intergenic | 20.0% |
| !! | AAGAAAATGATTTACCTTAA+TGG | + | tig0022500:37990-38009 | None:intergenic | 20.0% |
| !!! | ATGATAATTTTCCCAATAAT+AGG | - | tig0022500:38107-38126 | Msa1401150:intron | 20.0% |
| !! | TTGCTTCTTTAATTAAAATG+AGG | - | tig0022500:38253-38272 | Msa1401150:intron | 20.0% |
| !!! | ACATTGACTAAAAGAATTAT+TGG | - | tig0022500:38377-38396 | Msa1401150:intron | 20.0% |
| !! | CAAGTAAATAAAAATTCGTT+TGG | + | tig0022500:38425-38444 | None:intergenic | 20.0% |
| !!! | CAAACGAATTTTTATTTACT+TGG | - | tig0022500:38423-38442 | Msa1401150:intron | 20.0% |
| !!! | TTTTTTTCAACTCTTCAAAT+TGG | + | tig0022500:38601-38620 | None:intergenic | 20.0% |
| !! | TGGTACATATATATATACAA+CGG | + | tig0022500:38928-38947 | None:intergenic | 20.0% |
| !!! | GCTTTAAGTTTTAACATAAT+TGG | - | tig0022500:39095-39114 | Msa1401150:intron | 20.0% |
| !! | CATAATTGGTTATTATTTCA+CGG | - | tig0022500:39109-39128 | Msa1401150:intron | 20.0% |
| !!! | TGCAATATACGTTTAAAATA+GGG | + | tig0022500:39162-39181 | None:intergenic | 20.0% |
| !!! | ATGCAATATACGTTTAAAAT+AGG | + | tig0022500:39163-39182 | None:intergenic | 20.0% |
| !!! | GGATATTAATTTTTGGTTTA+GGG | + | tig0022500:39410-39429 | None:intergenic | 20.0% |
| !! | ATGCAATAATGATATAAACA+GGG | + | tig0022500:39569-39588 | None:intergenic | 20.0% |
| !! | AATGCAATAATGATATAAAC+AGG | + | tig0022500:39570-39589 | None:intergenic | 20.0% |
| !! | TTGCATTCAAACTAAAAATT+TGG | - | tig0022500:39583-39602 | Msa1401150:intron | 20.0% |
| !! | TGCATTCAAACTAAAAATTT+GGG | - | tig0022500:39584-39603 | Msa1401150:intron | 20.0% |
| !!! | ATTTTGACAAAAAAAGAAAG+AGG | + | tig0022500:39715-39734 | None:intergenic | 20.0% |
| !! | ATCACAATATAAAATTGTCA+AGG | + | tig0022500:39866-39885 | None:intergenic | 20.0% |
| !!! | CAATTTTTATAAGATCGAAT+TGG | - | tig0022500:39951-39970 | Msa1401150:intron | 20.0% |
| !! | AGTAAAAACGAAAAAATGTT+TGG | - | tig0022500:40092-40111 | Msa1401150:intron | 20.0% |
| !! | AATTCTTGCAACAAATAATA+AGG | - | tig0022500:40243-40262 | Msa1401150:intron | 20.0% |
| !!! | CGTTAAAAAAAGTTTTGTTT+TGG | - | tig0022500:40418-40437 | Msa1401150:intron | 20.0% |
| !! | GATTAAACTTATAAATTGTG+GGG | - | tig0022500:40492-40511 | Msa1401150:intron | 20.0% |
| !! | AGAAAGAAAGAAAGAAAAAA+AGG | + | tig0022500:40831-40850 | None:intergenic | 20.0% |
| !! | ATTATATTCCATTCTTGAAA+TGG | + | tig0022500:41029-41048 | None:intergenic | 20.0% |
| !! | ATAATTCTGATGAAGAATTA+TGG | - | tig0022500:41044-41063 | Msa1401150:intron | 20.0% |
| !!! | AACGTTTTCAAATGAAAAAT+TGG | + | tig0022500:41375-41394 | None:intergenic | 20.0% |
| !!! | GAAGATTCTTGATTTTTTTT+GGG | + | tig0022500:41529-41548 | None:intergenic | 20.0% |
| !!! | AGAAGATTCTTGATTTTTTT+TGG | + | tig0022500:41530-41549 | None:intergenic | 20.0% |
| !! | GGTCTTAGAAATTATTATTT+AGG | - | tig0022500:41676-41695 | Msa1401150:intron | 20.0% |
| !!! | CAAAATATTTTGAAATTGCA+AGG | - | tig0022500:41909-41928 | Msa1401150:intron | 20.0% |
| !! | AAATCCTTAGTATATTTCAA+TGG | - | tig0022500:42946-42965 | Msa1401150:five_prime_UTR | 20.0% |
| !! | TTGATGATTGATTATTGGTT+TGG | + | tig0022500:37351-37370 | None:intergenic | 25.0% |
| !!! | TTTTCTTTAGGAGCTTTTTA+AGG | + | tig0022500:37435-37454 | None:intergenic | 25.0% |
| !! | GATTTTCATGGTTTTTCTTT+AGG | + | tig0022500:37447-37466 | None:intergenic | 25.0% |
| !!! | TGTTTCTTTTGAGATTTTCA+TGG | + | tig0022500:37459-37478 | None:intergenic | 25.0% |
| !! | ATTCTTTTACTTTCCCATTA+AGG | - | tig0022500:37973-37992 | Msa1401150:intron | 25.0% |
| ! | ACATATGATTATGAAGAACT+TGG | + | tig0022500:38017-38036 | None:intergenic | 25.0% |
| ! | TTGAGTTAGGTTATAGTTTA+TGG | - | tig0022500:38075-38094 | Msa1401150:intron | 25.0% |
| ! | TGATAGTTTAGCCTATTATT+GGG | + | tig0022500:38121-38140 | None:intergenic | 25.0% |
| ! | ATGATAGTTTAGCCTATTAT+TGG | + | tig0022500:38122-38141 | None:intergenic | 25.0% |
| ! | GTGTAAAATTATAAACCAAG+TGG | - | tig0022500:38295-38314 | Msa1401150:intron | 25.0% |
| ! | AAATTATAAACCAAGTGGTA+AGG | - | tig0022500:38300-38319 | Msa1401150:intron | 25.0% |
| !! | TGGTAAGGTTTATTTGTTAA+TGG | - | tig0022500:38315-38334 | Msa1401150:intron | 25.0% |
| !! | GGTAAGGTTTATTTGTTAAT+GGG | - | tig0022500:38316-38335 | Msa1401150:intron | 25.0% |
| ! | TAAACTTATATCTTTCCTTC+CGG | + | tig0022500:38456-38475 | None:intergenic | 25.0% |
| ! | AATAAGACTAAGCTAATGTT+TGG | - | tig0022500:38512-38531 | Msa1401150:intron | 25.0% |
| ! | AGTTGAAAAAAACGTATGTT+TGG | - | tig0022500:38609-38628 | Msa1401150:intron | 25.0% |
| !!! | TTTTTTTCGACAGAAAAATC+AGG | + | tig0022500:38803-38822 | None:intergenic | 25.0% |
| ! | GGTACATATATATATACAAC+GGG | + | tig0022500:38927-38946 | None:intergenic | 25.0% |
| ! | CAAGTACCAACTATTTAAAT+GGG | + | tig0022500:38957-38976 | None:intergenic | 25.0% |
| !! | GCAATATACGTTTAAAATAG+GGG | + | tig0022500:39161-39180 | None:intergenic | 25.0% |
| !!! | GGGATATTAATTTTTGGTTT+AGG | + | tig0022500:39411-39430 | None:intergenic | 25.0% |
| !! | AATCTGGGGATATTAATTTT+TGG | + | tig0022500:39417-39436 | None:intergenic | 25.0% |
| !! | AGAGATTTGAAATTCAATCT+GGG | + | tig0022500:39432-39451 | None:intergenic | 25.0% |
| !! | TAGAGATTTGAAATTCAATC+TGG | + | tig0022500:39433-39452 | None:intergenic | 25.0% |
| !!! | AAGAATAAGTTGGTGTATAA+TGG | + | tig0022500:39510-39529 | None:intergenic | 25.0% |
| ! | TTATACACCAACTTATTCTT+AGG | - | tig0022500:39510-39529 | Msa1401150:intron | 25.0% |
| ! | AATGAAAAAAATGAGAGAGA+TGG | + | tig0022500:39823-39842 | None:intergenic | 25.0% |
| ! | TAAGAAATGCTTGAATTTAG+AGG | - | tig0022500:39913-39932 | Msa1401150:intron | 25.0% |
| !! | ATATTTTCTACACTCAACTA+GGG | + | tig0022500:40143-40162 | None:intergenic | 25.0% |
| !! | AATATTTTCTACACTCAACT+AGG | + | tig0022500:40144-40163 | None:intergenic | 25.0% |
| ! | GAAATCTTAATATATGACGA+AGG | - | tig0022500:40265-40284 | Msa1401150:intron | 25.0% |
| !!! | AAAAAAGTTTTGTTTTGGAG+AGG | - | tig0022500:40423-40442 | Msa1401150:intron | 25.0% |
| !!! | AGGAGTTTAAGTTGAAATAA+AGG | - | tig0022500:40539-40558 | Msa1401150:intron | 25.0% |
| !!! | AGTTTAAGTTGAAATAAAGG+AGG | - | tig0022500:40542-40561 | Msa1401150:intron | 25.0% |
| !!! | GTTTAAGTTGAAATAAAGGA+GGG | - | tig0022500:40543-40562 | Msa1401150:intron | 25.0% |
| !! | TAACTCTATTTTCAATCCAT+CGG | - | tig0022500:40787-40806 | Msa1401150:intron | 25.0% |
| ! | CCTAATTTAACAACAACAAA+GGG | + | tig0022500:40904-40923 | None:intergenic | 25.0% |
| ! | ACCTAATTTAACAACAACAA+AGG | + | tig0022500:40905-40924 | None:intergenic | 25.0% |
| ! | TTGTTAAATTAGGTTATGTG+TGG | - | tig0022500:40911-40930 | Msa1401150:intron | 25.0% |
| ! | TAATAAGAAGACAATGGTAA+AGG | + | tig0022500:41110-41129 | None:intergenic | 25.0% |
| ! | CAAAGTGATTCATATTTGTA+GGG | + | tig0022500:41272-41291 | None:intergenic | 25.0% |
| ! | TCAAAGTGATTCATATTTGT+AGG | + | tig0022500:41273-41292 | None:intergenic | 25.0% |
| !!! | AGATCTTGTAGATTTGTTTT+GGG | + | tig0022500:41579-41598 | None:intergenic | 25.0% |
| ! | TTAATGAAATTGGGGATTTA+GGG | + | tig0022500:41725-41744 | None:intergenic | 25.0% |
| ! | ATCATTGGGTTAATGAAATT+GGG | + | tig0022500:41734-41753 | None:intergenic | 25.0% |
| ! | AATCATTGGGTTAATGAAAT+TGG | + | tig0022500:41735-41754 | None:intergenic | 25.0% |
| ! | AAAAAGACTTAATGTGCAAA+AGG | + | tig0022500:41995-42014 | None:intergenic | 25.0% |
| ! | TATATCCTTGTGTGAAATAT+TGG | - | tig0022500:42139-42158 | Msa1401150:CDS | 25.0% |
| ! | TTAATCCAATATTTCACACA+AGG | + | tig0022500:42147-42166 | None:intergenic | 25.0% |
| !! | CGGTTAATTTAGATTTTTGT+TGG | + | tig0022500:42351-42370 | None:intergenic | 25.0% |
| ! | TTAAAATTAAGGTGAACACT+CGG | + | tig0022500:42371-42390 | None:intergenic | 25.0% |
| ! | TTATATAACCGATTACTACT+AGG | - | tig0022500:42422-42441 | Msa1401150:CDS | 25.0% |
| ! | TATATAACCGATTACTACTA+GGG | - | tig0022500:42423-42442 | Msa1401150:CDS | 25.0% |
| ! | CCAAATAAAAATAAATGTCG+AGG | + | tig0022500:42752-42771 | None:intergenic | 25.0% |
| !!! | CCTCGACATTTATTTTTATT+TGG | - | tig0022500:42749-42768 | Msa1401150:CDS | 25.0% |
| ! | AATCATGTCAAATAACATAG+TGG | + | tig0022500:42790-42809 | None:intergenic | 25.0% |
| !!! | GATTTTTTTAGCTTAAGACA+AGG | - | tig0022500:42806-42825 | Msa1401150:CDS | 25.0% |
| !! | GAAATATACTAAGGATTTTG+AGG | + | tig0022500:42944-42963 | None:intergenic | 25.0% |
| ! | AACTCCATTGAAATATACTA+AGG | + | tig0022500:42953-42972 | None:intergenic | 25.0% |
| ! | TTAGTATATTTCAATGGAGT+TGG | - | tig0022500:42952-42971 | Msa1401150:five_prime_UTR | 25.0% |
| AACATAGACACGTACAAATT+AGG | - | tig0022500:37302-37321 | Msa1401150:three_prime_UTR | 30.0% | |
| !! | ATTGATTATTGGTTTGGTGT+AGG | + | tig0022500:37345-37364 | None:intergenic | 30.0% |
| !!! | TTAGGAGCTTTTTAAGGTTT+TGG | + | tig0022500:37429-37448 | None:intergenic | 30.0% |
| ! | TGACGGATAGAAAATATACA+TGG | + | tig0022500:37600-37619 | None:intergenic | 30.0% |
| AAATGTTGACGTTTATTCCA+TGG | - | tig0022500:37724-37743 | Msa1401150:CDS | 30.0% | |
| AACAAATAAACCTTACCACT+TGG | + | tig0022500:38313-38332 | None:intergenic | 30.0% | |
| TTATTTACTTGGTCTCTTTC+CGG | - | tig0022500:38434-38453 | Msa1401150:intron | 30.0% | |
| ! | ACTAAGCTAATGTTTGGTTT+GGG | - | tig0022500:38518-38537 | Msa1401150:intron | 30.0% |
| TGAAAAAAACGTATGTTTGG+TGG | - | tig0022500:38612-38631 | Msa1401150:intron | 30.0% | |
| GAAAAAAACGTATGTTTGGT+GGG | - | tig0022500:38613-38632 | Msa1401150:intron | 30.0% | |
| ! | ATTTTGCATGTGTATGTGTT+CGG | - | tig0022500:38682-38701 | Msa1401150:intron | 30.0% |
| ! | ATTTTCTGATCATTCTTCAC+TGG | + | tig0022500:38898-38917 | None:intergenic | 30.0% |
| CCAAGTACCAACTATTTAAA+TGG | + | tig0022500:38958-38977 | None:intergenic | 30.0% | |
| ! | CCATTTAAATAGTTGGTACT+TGG | - | tig0022500:38955-38974 | Msa1401150:intron | 30.0% |
| ! | CGTTGATTAAACTACTCTTA+AGG | + | tig0022500:39076-39095 | None:intergenic | 30.0% |
| !! | AAATTGTCACTTTGTCACTT+TGG | - | tig0022500:39383-39402 | Msa1401150:intron | 30.0% |
| ! | GAGATTTGAAATTCAATCTG+GGG | + | tig0022500:39431-39450 | None:intergenic | 30.0% |
| GTAATATAGAGAATGAGAGA+TGG | - | tig0022500:39681-39700 | Msa1401150:intron | 30.0% | |
| GAATTTACACAAGTATACAC+AGG | - | tig0022500:39984-40003 | Msa1401150:intron | 30.0% | |
| !!! | GAGTTTCTTTATTTTTTGCG+TGG | + | tig0022500:40172-40191 | None:intergenic | 30.0% |
| AATTTACTCGTCAAATGATG+AGG | - | tig0022500:40293-40312 | Msa1401150:intron | 30.0% | |
| AATAGTAAAACACTCGTATC+AGG | + | tig0022500:40343-40362 | None:intergenic | 30.0% | |
| !! | CCCTTTGTTGTTGTTAAATT+AGG | - | tig0022500:40901-40920 | Msa1401150:intron | 30.0% |
| !!! | TACTGACTTGTGATTCTTTT+TGG | - | tig0022500:41461-41480 | Msa1401150:intron | 30.0% |
| AGCATGAATTATTCTTGATC+TGG | + | tig0022500:41490-41509 | None:intergenic | 30.0% | |
| !!! | GATCTTGTAGATTTGTTTTG+GGG | + | tig0022500:41578-41597 | None:intergenic | 30.0% |
| !! | CAGATCTTGTAGATTTGTTT+TGG | + | tig0022500:41580-41599 | None:intergenic | 30.0% |
| ! | TTCGAAAGATCTGAGTTTTA+TGG | - | tig0022500:41637-41656 | Msa1401150:intron | 30.0% |
| !! | TCGAAAGATCTGAGTTTTAT+GGG | - | tig0022500:41638-41657 | Msa1401150:intron | 30.0% |
| TATGGGCATTTGTATGATTT+CGG | - | tig0022500:41655-41674 | Msa1401150:intron | 30.0% | |
| GTTAATGAAATTGGGGATTT+AGG | + | tig0022500:41726-41745 | None:intergenic | 30.0% | |
| TCATTGGGTTAATGAAATTG+GGG | + | tig0022500:41733-41752 | None:intergenic | 30.0% | |
| !!! | GTTGTCAATTTTTTCCATGA+AGG | - | tig0022500:41878-41897 | Msa1401150:intron | 30.0% |
| ! | ATTTTGAATTTGGTCCTTCA+TGG | + | tig0022500:41895-41914 | None:intergenic | 30.0% |
| ATCTTTCATGCAACATTGAT+TGG | - | tig0022500:42231-42250 | Msa1401150:intron | 30.0% | |
| ACAGTCACATGTATAGTAAA+TGG | + | tig0022500:42394-42413 | None:intergenic | 30.0% | |
| AAACATTCCCTAGTAGTAAT+CGG | + | tig0022500:42433-42452 | None:intergenic | 30.0% | |
| ACTGTTATATTTCTCGCTTA+AGG | + | tig0022500:42649-42668 | None:intergenic | 30.0% | |
| GAAATATAACAGTGTTAGAG+AGG | - | tig0022500:42656-42675 | Msa1401150:CDS | 30.0% | |
| ! | ATTCTAGCTGAAAAATCAAG+TGG | - | tig0022500:42690-42709 | Msa1401150:CDS | 30.0% |
| CGGATAGAAAATATACATGG+TGG | + | tig0022500:37597-37616 | None:intergenic | 35.0% | |
| GTTGAAGCTGAAGAAGATTA+AGG | - | tig0022500:37643-37662 | Msa1401150:CDS | 35.0% | |
| ACTTGACTAACCGTATCAAA+GGG | + | tig0022500:37932-37951 | None:intergenic | 35.0% | |
| AACTTGACTAACCGTATCAA+AGG | + | tig0022500:37933-37952 | None:intergenic | 35.0% | |
| ! | TTGATACGGTTAGTCAAGTT+AGG | - | tig0022500:37933-37952 | Msa1401150:intron | 35.0% |
| ! | TGATACGGTTAGTCAAGTTA+GGG | - | tig0022500:37934-37953 | Msa1401150:intron | 35.0% |
| ATAGGCTAAACTATCATGTG+CGG | - | tig0022500:38125-38144 | Msa1401150:intron | 35.0% | |
| ! | TAAACTATCATGTGCGGTTT+TGG | - | tig0022500:38131-38150 | Msa1401150:intron | 35.0% |
| TCACTTGAAGACACATAGTT+TGG | - | tig0022500:38341-38360 | Msa1401150:intron | 35.0% | |
| GACTAAGCTAATGTTTGGTT+TGG | - | tig0022500:38517-38536 | Msa1401150:intron | 35.0% | |
| ! | TTTTGCATGTGTATGTGTTC+GGG | - | tig0022500:38683-38702 | Msa1401150:intron | 35.0% |
| ACTATTTAAATGGGTGGTAG+TGG | + | tig0022500:38948-38967 | None:intergenic | 35.0% | |
| CTACCACCCATTTAAATAGT+TGG | - | tig0022500:38948-38967 | Msa1401150:intron | 35.0% | |
| GTACCAACTATTTAAATGGG+TGG | + | tig0022500:38954-38973 | None:intergenic | 35.0% | |
| !! | CAATTTTGATCCAAGCATTG+GGG | + | tig0022500:38983-39002 | None:intergenic | 35.0% |
| !! | GCAATTTTGATCCAAGCATT+GGG | + | tig0022500:38984-39003 | None:intergenic | 35.0% |
| !! | TGCAATTTTGATCCAAGCAT+TGG | + | tig0022500:38985-39004 | None:intergenic | 35.0% |
| TTCGTTATCACTTTAGTCTC+TGG | - | tig0022500:39277-39296 | Msa1401150:intron | 35.0% | |
| TCAGAGACCTAAGAATAAGT+TGG | + | tig0022500:39520-39539 | None:intergenic | 35.0% | |
| GTGCATACTTACTATCAGTT+AGG | - | tig0022500:39542-39561 | Msa1401150:intron | 35.0% | |
| CAACCAACTTCATCTCATTA+AGG | - | tig0022500:39766-39785 | Msa1401150:intron | 35.0% | |
| TCACATGCTTCATAGATAGA+TGG | - | tig0022500:40370-40389 | Msa1401150:intron | 35.0% | |
| ATGCTTCATAGATAGATGGT+AGG | - | tig0022500:40374-40393 | Msa1401150:intron | 35.0% | |
| !! | TCTCTTTTTCATCTCGATCT+AGG | - | tig0022500:40848-40867 | Msa1401150:intron | 35.0% |
| !! | CTCTTTTTCATCTCGATCTA+GGG | - | tig0022500:40849-40868 | Msa1401150:intron | 35.0% |
| TCAAAATGATCACCATTTGC+AGG | - | tig0022500:41968-41987 | Msa1401150:intron | 35.0% | |
| ! | TCTCTTCAGCTCTTCAATTT+TGG | + | tig0022500:42556-42575 | None:intergenic | 35.0% |
| AATAACATAGTGGTCAGTAC+AGG | + | tig0022500:42780-42799 | None:intergenic | 35.0% | |
| ! | TTTGGTGTAGGAAATTGTGG+TGG | + | tig0022500:37333-37352 | None:intergenic | 40.0% |
| !! | TGGTTTGGTGTAGGAAATTG+TGG | + | tig0022500:37336-37355 | None:intergenic | 40.0% |
| ACACTTACACACATCTCCTA+TGG | - | tig0022500:37483-37502 | Msa1401150:intron | 40.0% | |
| ACGTGCATGTAACTCGAAAA+CGG | + | tig0022500:37553-37572 | None:intergenic | 40.0% | |
| ! | TGGTGGTGAATAAGAGTAAG+AGG | + | tig0022500:37580-37599 | None:intergenic | 40.0% |
| ATCTTGAGGTATGGATCTGA+CGG | + | tig0022500:37617-37636 | None:intergenic | 40.0% | |
| ATCCATACCTCAAGATCGTA+CGG | - | tig0022500:37621-37640 | Msa1401150:CDS | 40.0% | |
| GAGATATCTACGGTGATATG+CGG | + | tig0022500:37680-37699 | None:intergenic | 40.0% | |
| ! | GAAGAGCATGGAGATATCTA+CGG | + | tig0022500:37690-37709 | None:intergenic | 40.0% |
| GACGTTTATTCCATGGACTT+TGG | - | tig0022500:37731-37750 | Msa1401150:CDS | 40.0% | |
| TCTTATAGAGGGAAACCACT+TGG | - | tig0022500:37773-37792 | Msa1401150:intron | 40.0% | |
| CTTATAGAGGGAAACCACTT+GGG | - | tig0022500:37774-37793 | Msa1401150:intron | 40.0% | |
| GATGCAGAATTCAGTGGTAT+TGG | - | tig0022500:37854-37873 | Msa1401150:intron | 40.0% | |
| ! | ACCTGAGATAGTGTTGTTGT+TGG | - | tig0022500:37883-37902 | Msa1401150:intron | 40.0% |
| TCCAACAACAACACTATCTC+AGG | + | tig0022500:37887-37906 | None:intergenic | 40.0% | |
| ! | TGAGATAGTGTTGTTGTTGG+AGG | - | tig0022500:37886-37905 | Msa1401150:intron | 40.0% |
| GGGTATGATACCCTTTGATA+CGG | - | tig0022500:37919-37938 | Msa1401150:intron | 40.0% | |
| ! | GATACGGTTAGTCAAGTTAG+GGG | - | tig0022500:37935-37954 | Msa1401150:intron | 40.0% |
| TAGTCAAGTTAGGGGCAAAA+TGG | - | tig0022500:37943-37962 | Msa1401150:intron | 40.0% | |
| AGTCAAGTTAGGGGCAAAAT+GGG | - | tig0022500:37944-37963 | Msa1401150:intron | 40.0% | |
| !! | TGTCACTTTGGTTTGTGCAT+TGG | + | tig0022500:38568-38587 | None:intergenic | 40.0% |
| TTCTGATCATTCTTCACTGG+TGG | + | tig0022500:38895-38914 | None:intergenic | 40.0% | |
| ACGGATATCATCCCAATGTT+GGG | - | tig0022500:39128-39147 | Msa1401150:intron | 40.0% | |
| ATATCATCCCAATGTTGGGT+TGG | - | tig0022500:39132-39151 | Msa1401150:intron | 40.0% | |
| CCACCTTAATGAGATGAAGT+TGG | + | tig0022500:39772-39791 | None:intergenic | 40.0% | |
| CCAACTTCATCTCATTAAGG+TGG | - | tig0022500:39769-39788 | Msa1401150:intron | 40.0% | |
| ! | GAGGGTATGTGAGCATAAAT+GGG | - | tig0022500:40561-40580 | Msa1401150:intron | 40.0% |
| AGGGTATGTGAGCATAAATG+GGG | - | tig0022500:40562-40581 | Msa1401150:intron | 40.0% | |
| ! | CTCTATTTTCAATCCATCGG+AGG | - | tig0022500:40790-40809 | Msa1401150:intron | 40.0% |
| ! | ATTGGGGATTTAGGGTAAAG+AGG | + | tig0022500:41717-41736 | None:intergenic | 40.0% |
| ATGACATGACTTACGTGACT+AGG | + | tig0022500:41844-41863 | None:intergenic | 40.0% | |
| AAGCAGCGTTTGGAAAAGAA+AGG | - | tig0022500:42591-42610 | Msa1401150:CDS | 40.0% | |
| AGCAGCGTTTGGAAAAGAAA+GGG | - | tig0022500:42592-42611 | Msa1401150:CDS | 40.0% | |
| GGCTAATACAGTAACTTGAG+AGG | + | tig0022500:42731-42750 | None:intergenic | 40.0% | |
| GTTGGTTGAAAGTAGATAGG+TGG | + | tig0022500:42848-42867 | None:intergenic | 40.0% | |
| !! | GGTGTTGGTTGAAAGTAGAT+AGG | + | tig0022500:42851-42870 | None:intergenic | 40.0% |
| GAGTTTGATCTGTACGAGGT+TGG | + | tig0022500:37514-37533 | None:intergenic | 45.0% | |
| ACGTGAGTTTGATCTGTACG+AGG | + | tig0022500:37518-37537 | None:intergenic | 45.0% | |
| AACCGTACGATCTTGAGGTA+TGG | + | tig0022500:37626-37645 | None:intergenic | 45.0% | |
| ACGTGGCGGTATCTTATAGA+GGG | - | tig0022500:37762-37781 | Msa1401150:CDS | 45.0% | |
| GGCTATGGGATCTTCATTTG+TGG | - | tig0022500:37826-37845 | Msa1401150:intron | 45.0% | |
| GATGCTGATGCAGAATTCAG+TGG | - | tig0022500:37848-37867 | Msa1401150:intron | 45.0% | |
| TTGTTGGAGGACCTTGCTAA+GGG | - | tig0022500:37899-37918 | Msa1401150:intron | 45.0% | |
| ! | AGGGTATCATACCCTTAGCA+AGG | + | tig0022500:37913-37932 | None:intergenic | 45.0% |
| GTCAAGTTAGGGGCAAAATG+GGG | - | tig0022500:37945-37964 | Msa1401150:intron | 45.0% | |
| ! | CCTCATGAAGACAGTGTTGA+CGG | + | tig0022500:38182-38201 | None:intergenic | 45.0% |
| TTACTTGGTCTCTTTCCGGA+AGG | - | tig0022500:38438-38457 | Msa1401150:intron | 45.0% | |
| ! | GGAGCTTCTCAATGTCACTT+TGG | + | tig0022500:38580-38599 | None:intergenic | 45.0% |
| CACGGATATCATCCCAATGT+TGG | - | tig0022500:39127-39146 | Msa1401150:intron | 45.0% | |
| GACAGTGAGCTGCAAAGTTA+TGG | + | tig0022500:39209-39228 | None:intergenic | 45.0% | |
| ACACTCGTATCAGGTACGTA+CGG | + | tig0022500:40334-40353 | None:intergenic | 45.0% | |
| ! | GGAGGGTATGTGAGCATAAA+TGG | - | tig0022500:40560-40579 | Msa1401150:intron | 45.0% |
| GTATGTGAGCATAAATGGGG+TGG | - | tig0022500:40565-40584 | Msa1401150:intron | 45.0% | |
| GCAAGCAGCCATTTCAAGAA+TGG | - | tig0022500:41018-41037 | Msa1401150:intron | 45.0% | |
| TGTGCAAAAGGTCCTGCAAA+TGG | + | tig0022500:41983-42002 | None:intergenic | 45.0% | |
| ! | TTTTCACCTTGCTAGTGCAG+TGG | - | tig0022500:42312-42331 | Msa1401150:CDS | 45.0% |
| TTTCACCTTGCTAGTGCAGT+GGG | - | tig0022500:42313-42332 | Msa1401150:CDS | 45.0% | |
| AGAACCAAAGTTGTCAGAGC+TGG | - | tig0022500:42497-42516 | Msa1401150:CDS | 45.0% | |
| ! | ACTTCCAGCTCTGACAACTT+TGG | + | tig0022500:42504-42523 | None:intergenic | 45.0% |
| TGAATCCACAAAGCAGCGTT+TGG | - | tig0022500:42581-42600 | Msa1401150:CDS | 45.0% | |
| !! | CTTTTCCAAACGCTGCTTTG+TGG | + | tig0022500:42589-42608 | None:intergenic | 45.0% |
| GCAGCGTTTGGAAAAGAAAG+GGG | - | tig0022500:42593-42612 | Msa1401150:CDS | 45.0% | |
| CAGCGTTTGGAAAAGAAAGG+GGG | - | tig0022500:42594-42613 | Msa1401150:CDS | 45.0% | |
| TAGTTCCTGGATCAGACTCT+GGG | + | tig0022500:42907-42926 | None:intergenic | 45.0% | |
| TCTGATCCAGGAACTACTTC+AGG | - | tig0022500:42911-42930 | Msa1401150:five_prime_UTR | 45.0% | |
| !! | AAAAAAAAAAAAAAAAAATC+AGG | + | tig0022500:38836-38855 | None:intergenic | 5.0% |
| TGATCTGTACGAGGTTGGCA+TGG | + | tig0022500:37509-37528 | None:intergenic | 50.0% | |
| GCTTCAACCGTACGATCTTG+AGG | + | tig0022500:37631-37650 | None:intergenic | 50.0% | |
| CACTCTCAACGTGAAGAGCA+TGG | + | tig0022500:37702-37721 | None:intergenic | 50.0% | |
| CATGCTCTTCACGTTGAGAG+TGG | - | tig0022500:37700-37719 | Msa1401150:CDS | 50.0% | |
| GTCAACAGCACCAAAGTCCA+TGG | + | tig0022500:37744-37763 | None:intergenic | 50.0% | |
| GACGTGGCGGTATCTTATAG+AGG | - | tig0022500:37761-37780 | Msa1401150:CDS | 50.0% | |
| GGCACGTGACTTCGAAGAAT+GGG | - | tig0022500:37795-37814 | Msa1401150:intron | 50.0% | |
| TTCGAAGAATGGGCACGTGA+GGG | - | tig0022500:37805-37824 | Msa1401150:intron | 50.0% | |
| GTTGTTGGAGGACCTTGCTA+AGG | - | tig0022500:37898-37917 | Msa1401150:intron | 50.0% | |
| CCGTCAACACTGTCTTCATG+AGG | - | tig0022500:38179-38198 | Msa1401150:intron | 50.0% | |
| GTACTTGGTACCCCAATGCT+TGG | - | tig0022500:38970-38989 | Msa1401150:intron | 50.0% | |
| !! | TCATCCCAATGTTGGGTTGG+TGG | - | tig0022500:39135-39154 | Msa1401150:intron | 50.0% |
| CTGAAAGAACGTACCTCCGA+TGG | + | tig0022500:40806-40825 | None:intergenic | 50.0% | |
| GACACCCACTATAGAGTCGA+TGG | - | tig0022500:40946-40965 | Msa1401150:intron | 50.0% | |
| !! | CTCGCCATCGACTCTATAGT+GGG | + | tig0022500:40953-40972 | None:intergenic | 50.0% |
| !! | TCTCGCCATCGACTCTATAG+TGG | + | tig0022500:40954-40973 | None:intergenic | 50.0% |
| CGTGAGCTCTCTCAATGCAA+TGG | - | tig0022500:41067-41086 | Msa1401150:intron | 50.0% | |
| GAGCTCTCTCAATGCAATGG+TGG | - | tig0022500:41070-41089 | Msa1401150:intron | 50.0% | |
| ATAAGCCCACTGCACTAGCA+AGG | + | tig0022500:42321-42340 | None:intergenic | 50.0% | |
| ! | TGGAAAAGAAAGGGGGCACA+AGG | - | tig0022500:42601-42620 | Msa1401150:CDS | 50.0% |
| ! | GGAAAAGAAAGGGGGCACAA+GGG | - | tig0022500:42602-42621 | Msa1401150:CDS | 50.0% |
| ! | GATAGGTGGTGATGCTCTCA+AGG | + | tig0022500:42834-42853 | None:intergenic | 50.0% |
| ! | GGTGGTCTTGAAGATGGTGT+TGG | + | tig0022500:42866-42885 | None:intergenic | 50.0% |
| ! | ATCGGAGGTGGTCTTGAAGA+TGG | + | tig0022500:42872-42891 | None:intergenic | 50.0% |
| TCTTCAAGACCACCTCCGAT+CGG | - | tig0022500:42872-42891 | Msa1401150:five_prime_UTR | 50.0% | |
| GTAGTTCCTGGATCAGACTC+TGG | + | tig0022500:42908-42927 | None:intergenic | 50.0% | |
| TACGAGGTTGGCATGGCCAT+AGG | + | tig0022500:37502-37521 | None:intergenic | 55.0% | |
| !! | GGACTTTGGTGCTGTTGACG+TGG | - | tig0022500:37745-37764 | Msa1401150:CDS | 55.0% |
| !! | CTTTGGTGCTGTTGACGTGG+CGG | - | tig0022500:37748-37767 | Msa1401150:CDS | 55.0% |
| TTCGAAGTCACGTGCCCAAG+TGG | + | tig0022500:37791-37810 | None:intergenic | 55.0% | |
| GGGCACGTGACTTCGAAGAA+TGG | - | tig0022500:37794-37813 | Msa1401150:intron | 55.0% | |
| CTTCGAAGAATGGGCACGTG+AGG | - | tig0022500:37804-37823 | Msa1401150:intron | 55.0% | |
| AATGGGCACGTGAGGGCTAT+GGG | - | tig0022500:37812-37831 | Msa1401150:intron | 55.0% | |
| ! | TCTCGATCTAGGGTGCGACA+CGG | - | tig0022500:40859-40878 | Msa1401150:intron | 55.0% |
| ! | AGGGGGCACAAGGGACAAAA+TGG | - | tig0022500:42611-42630 | Msa1401150:CDS | 55.0% |
| ! | GGGGGCACAAGGGACAAAAT+GGG | - | tig0022500:42612-42631 | Msa1401150:CDS | 55.0% |
| ! | TCCTGGATCAGACTCTGGGA+CGG | + | tig0022500:42903-42922 | None:intergenic | 55.0% |
| CGCGTTCCTGAAGTAGTTCC+TGG | + | tig0022500:42920-42939 | None:intergenic | 55.0% | |
| GAATGGGCACGTGAGGGCTA+TGG | - | tig0022500:37811-37830 | Msa1401150:intron | 60.0% | |
| GGGGCCACCAACCCAACATT+GGG | + | tig0022500:39142-39161 | None:intergenic | 60.0% | |
| AGGGGCCACCAACCCAACAT+TGG | + | tig0022500:39143-39162 | None:intergenic | 60.0% | |
| ! | ATCTAGGGTGCGACACGGTG+TGG | - | tig0022500:40864-40883 | Msa1401150:intron | 60.0% |
| !! | CTGGATCAGACTCTGGGACG+GGG | + | tig0022500:42901-42920 | None:intergenic | 60.0% |
| !! | CCTGGATCAGACTCTGGGAC+GGG | + | tig0022500:42902-42921 | None:intergenic | 60.0% |
| ! | TCTGGGACGGGGACTCCGAT+CGG | + | tig0022500:42890-42909 | None:intergenic | 65.0% |
| CCCGTCCCAGAGTCTGATCC+AGG | - | tig0022500:42899-42918 | Msa1401150:five_prime_UTR | 65.0% | |
| ACGGGGACTCCGATCGGAGG+TGG | + | tig0022500:42884-42903 | None:intergenic | 70.0% | |
| GGGACGGGGACTCCGATCGG+AGG | + | tig0022500:42887-42906 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022500 | gene | 37300 | 42987 | 37300 | ID=Msa1401150;Name=Msa1401150 |
| tig0022500 | mRNA | 37300 | 42987 | 37300 | ID=Msa1401150-mRNA-1;Parent=Msa1401150;Name=Msa1401150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=158|1|0.8|1|1|1|5|32|349 |
| tig0022500 | exon | 37300 | 37470 | 37300 | ID=Msa1401150-mRNA-1:exon:18213;Parent=Msa1401150-mRNA-1 |
| tig0022500 | exon | 37569 | 37788 | 37569 | ID=Msa1401150-mRNA-1:exon:18212;Parent=Msa1401150-mRNA-1 |
| tig0022500 | exon | 39196 | 39277 | 39196 | ID=Msa1401150-mRNA-1:exon:18211;Parent=Msa1401150-mRNA-1 |
| tig0022500 | exon | 42087 | 42158 | 42087 | ID=Msa1401150-mRNA-1:exon:18210;Parent=Msa1401150-mRNA-1 |
| tig0022500 | exon | 42293 | 42987 | 42293 | ID=Msa1401150-mRNA-1:exon:18209;Parent=Msa1401150-mRNA-1 |
| tig0022500 | five_prime_UTR | 42830 | 42987 | 42830 | ID=Msa1401150-mRNA-1:five_prime_utr;Parent=Msa1401150-mRNA-1 |
| tig0022500 | CDS | 42293 | 42829 | 42293 | ID=Msa1401150-mRNA-1:cds;Parent=Msa1401150-mRNA-1 |
| tig0022500 | CDS | 42087 | 42158 | 42087 | ID=Msa1401150-mRNA-1:cds;Parent=Msa1401150-mRNA-1 |
| tig0022500 | CDS | 39196 | 39277 | 39196 | ID=Msa1401150-mRNA-1:cds;Parent=Msa1401150-mRNA-1 |
| tig0022500 | CDS | 37569 | 37788 | 37569 | ID=Msa1401150-mRNA-1:cds;Parent=Msa1401150-mRNA-1 |
| tig0022500 | CDS | 37332 | 37470 | 37332 | ID=Msa1401150-mRNA-1:cds;Parent=Msa1401150-mRNA-1 |
| tig0022500 | three_prime_UTR | 37300 | 37331 | 37300 | ID=Msa1401150-mRNA-1:three_prime_utr;Parent=Msa1401150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
