Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163980 | XP_013468051.1 | 95.954 | 519 | 11 | 4 | 1 | 517 | 1 | 511 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163980 | sp|Q9LZS0|PTL_ARATH | 57.929 | 309 | 100 | 9 | 137 | 421 | 119 | 421 | 4.60e-100 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163980 | A0A072VKX9 | 95.954 | 519 | 11 | 4 | 1 | 517 | 1 | 511 | 0.0 | 1025 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0163980 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0163980 | 0.873854 | 1.064678e-67 | -8.615850e-47 |
| Msa0025330 | Msa0163980 | 0.806379 | 8.462834e-50 | -8.615850e-47 |
| Msa0028640 | Msa0163980 | 0.815020 | 1.144696e-51 | -8.615850e-47 |
| Msa0034270 | Msa0163980 | 0.807152 | 5.811369e-50 | -8.615850e-47 |
| Msa0053780 | Msa0163980 | 0.816978 | 4.183893e-52 | -8.615850e-47 |
| Msa0072370 | Msa0163980 | 0.901101 | 3.765744e-78 | -8.615850e-47 |
| Msa0089630 | Msa0163980 | 0.809430 | 1.899246e-50 | -8.615850e-47 |
| Msa0110970 | Msa0163980 | 0.849552 | 3.005933e-60 | -8.615850e-47 |
| Msa0112750 | Msa0163980 | 0.803388 | 3.569665e-49 | -8.615850e-47 |
| Msa0120730 | Msa0163980 | 0.871395 | 7.061392e-67 | -8.615850e-47 |
| Msa0121090 | Msa0163980 | 0.801779 | 7.664751e-49 | -8.615850e-47 |
| Msa0124280 | Msa0163980 | 0.809774 | 1.602350e-50 | -8.615850e-47 |
| Msa0140780 | Msa0163980 | 0.815274 | 1.005634e-51 | -8.615850e-47 |
| Msa0141100 | Msa0163980 | 0.804666 | 1.935764e-49 | -8.615850e-47 |
| Msa0157290 | Msa0163980 | 0.874194 | 8.169566e-68 | -8.615850e-47 |
| Msa0160130 | Msa0163980 | 0.802300 | 5.988647e-49 | -8.615850e-47 |
| Msa0163980 | Msa0189290 | 0.801046 | 1.082865e-48 | -8.615850e-47 |
| Msa0163980 | Msa0197930 | 0.838907 | 2.175404e-57 | -8.615850e-47 |
| Msa0163980 | Msa0200260 | 0.836805 | 7.545799e-57 | -8.615850e-47 |
| Msa0163980 | Msa0225600 | 0.813001 | 3.191816e-51 | -8.615850e-47 |
| Msa0163980 | Msa0239570 | 0.802559 | 5.297124e-49 | -8.615850e-47 |
| Msa0163980 | Msa0243100 | 0.840029 | 1.111791e-57 | -8.615850e-47 |
| Msa0163980 | Msa0261340 | 0.801354 | 9.367424e-49 | -8.615850e-47 |
| Msa0163980 | Msa0264870 | 0.804614 | 1.985227e-49 | -8.615850e-47 |
| Msa0163980 | Msa0266450 | 0.824695 | 7.023051e-54 | -8.615850e-47 |
| Msa0163980 | Msa0277180 | 0.807124 | 5.890598e-50 | -8.615850e-47 |
| Msa0163980 | Msa0287650 | 0.833661 | 4.692739e-56 | -8.615850e-47 |
| Msa0163980 | Msa0288680 | 0.818893 | 1.545543e-52 | -8.615850e-47 |
| Msa0163980 | Msa0311280 | 0.808375 | 3.194427e-50 | -8.615850e-47 |
| Msa0163980 | Msa0317280 | 0.830658 | 2.594630e-55 | -8.615850e-47 |
| Msa0163980 | Msa0317340 | 0.813967 | 1.957589e-51 | -8.615850e-47 |
| Msa0163980 | Msa0337540 | 0.805358 | 1.387222e-49 | -8.615850e-47 |
| Msa0163980 | Msa0341050 | 0.802892 | 4.522502e-49 | -8.615850e-47 |
| Msa0163980 | Msa0371170 | 0.801141 | 1.035865e-48 | -8.615850e-47 |
| Msa0163980 | Msa0374850 | 0.809056 | 2.284560e-50 | -8.615850e-47 |
| Msa0163980 | Msa0387510 | 0.815950 | 7.108082e-52 | -8.615850e-47 |
| Msa0163980 | Msa0392510 | 0.806929 | 6.478823e-50 | -8.615850e-47 |
| Msa0163980 | Msa0407920 | 0.800976 | 1.119402e-48 | -8.615850e-47 |
| Msa0163980 | Msa0410500 | 0.803925 | 2.761584e-49 | -8.615850e-47 |
| Msa0163980 | Msa0410650 | 0.809451 | 1.880075e-50 | -8.615850e-47 |
| Msa0163980 | Msa0417880 | 0.805628 | 1.218041e-49 | -8.615850e-47 |
| Msa0163980 | Msa0450440 | 0.805749 | 1.148623e-49 | -8.615850e-47 |
| Msa0163980 | Msa0461720 | 0.807744 | 4.352155e-50 | -8.615850e-47 |
| Msa0163980 | Msa0461730 | 0.800501 | 1.399344e-48 | -8.615850e-47 |
| Msa0163980 | Msa0464680 | 0.816351 | 5.782164e-52 | -8.615850e-47 |
| Msa0163980 | Msa0475790 | 0.821171 | 4.651836e-53 | -8.615850e-47 |
| Msa0163980 | Msa0487630 | 0.805517 | 1.284773e-49 | -8.615850e-47 |
| Msa0163980 | Msa0503580 | 0.808368 | 3.205591e-50 | -8.615850e-47 |
| Msa0163980 | Msa0507680 | 0.803819 | 2.905933e-49 | -8.615850e-47 |
| Msa0163980 | Msa0510980 | 0.818677 | 1.730255e-52 | -8.615850e-47 |
| Msa0163980 | Msa0527550 | 0.808710 | 2.708752e-50 | -8.615850e-47 |
| Msa0163980 | Msa0527790 | 0.813433 | 2.565786e-51 | -8.615850e-47 |
| Msa0163980 | Msa0531430 | 0.811396 | 7.150935e-51 | -8.615850e-47 |
| Msa0163980 | Msa0534590 | 0.825593 | 4.306638e-54 | -8.615850e-47 |
| Msa0163980 | Msa0569200 | 0.809494 | 1.840785e-50 | -8.615850e-47 |
| Msa0163980 | Msa0571140 | 0.809764 | 1.610713e-50 | -8.615850e-47 |
| Msa0163980 | Msa0574890 | 0.812165 | 4.863451e-51 | -8.615850e-47 |
| Msa0163980 | Msa0590800 | 0.834078 | 3.690576e-56 | -8.615850e-47 |
| Msa0163980 | Msa0616220 | 0.816844 | 4.483862e-52 | -8.615850e-47 |
| Msa0163980 | Msa0626510 | 0.800243 | 1.579289e-48 | -8.615850e-47 |
| Msa0163980 | Msa0631120 | 0.821757 | 3.406469e-53 | -8.615850e-47 |
| Msa0163980 | Msa0657970 | 0.816836 | 4.504037e-52 | -8.615850e-47 |
| Msa0163980 | Msa0662240 | 0.800946 | 1.135238e-48 | -8.615850e-47 |
| Msa0163980 | Msa0662500 | 0.816878 | 4.405897e-52 | -8.615850e-47 |
| Msa0163980 | Msa0669320 | 0.809039 | 2.304036e-50 | -8.615850e-47 |
| Msa0163980 | Msa0669340 | 0.818843 | 1.586041e-52 | -8.615850e-47 |
| Msa0163980 | Msa0682330 | 0.800192 | 1.617140e-48 | -8.615850e-47 |
| Msa0163980 | Msa0684500 | 0.828113 | 1.076789e-54 | -8.615850e-47 |
| Msa0163980 | Msa0696640 | 0.807677 | 4.496909e-50 | -8.615850e-47 |
| Msa0163980 | Msa0699550 | 0.813764 | 2.170336e-51 | -8.615850e-47 |
| Msa0163980 | Msa0716450 | 0.812591 | 3.924842e-51 | -8.615850e-47 |
| Msa0163980 | Msa0727710 | 0.807058 | 6.084145e-50 | -8.615850e-47 |
| Msa0163980 | Msa0754520 | 0.806765 | 7.017071e-50 | -8.615850e-47 |
| Msa0163980 | Msa0796530 | 0.803044 | 4.207131e-49 | -8.615850e-47 |
| Msa0163980 | Msa0833220 | 0.814973 | 1.172784e-51 | -8.615850e-47 |
| Msa0163980 | Msa0837980 | 0.806219 | 9.146398e-50 | -8.615850e-47 |
| Msa0163980 | Msa0858840 | 0.814512 | 1.483385e-51 | -8.615850e-47 |
| Msa0163980 | Msa0861600 | 0.805535 | 1.274087e-49 | -8.615850e-47 |
| Msa0163980 | Msa0861870 | 0.809240 | 2.086304e-50 | -8.615850e-47 |
| Msa0163980 | Msa0880140 | 0.874688 | 5.552388e-68 | -8.615850e-47 |
| Msa0163980 | Msa0896540 | 0.806021 | 1.006960e-49 | -8.615850e-47 |
| Msa0163980 | Msa0902760 | 0.813985 | 1.939296e-51 | -8.615850e-47 |
| Msa0163980 | Msa0906130 | 0.804624 | 1.975395e-49 | -8.615850e-47 |
| Msa0163980 | Msa0936410 | 0.812411 | 4.297176e-51 | -8.615850e-47 |
| Msa0163980 | Msa0944030 | 0.806320 | 8.708843e-50 | -8.615850e-47 |
| Msa0163980 | Msa0954130 | 0.804303 | 2.305212e-49 | -8.615850e-47 |
| Msa0163980 | Msa0973250 | 0.806517 | 7.915633e-50 | -8.615850e-47 |
| Msa0163980 | Msa0996680 | 0.804341 | 2.262966e-49 | -8.615850e-47 |
| Msa0163980 | Msa1004550 | 0.804534 | 2.063260e-49 | -8.615850e-47 |
| Msa0163980 | Msa1004600 | 0.809864 | 1.532863e-50 | -8.615850e-47 |
| Msa0163980 | Msa1013400 | 0.816177 | 6.324371e-52 | -8.615850e-47 |
| Msa0163980 | Msa1031930 | 0.807355 | 5.263242e-50 | -8.615850e-47 |
| Msa0163980 | Msa1040400 | 0.810985 | 8.776457e-51 | -8.615850e-47 |
| Msa0163980 | Msa1080100 | 0.805155 | 1.530340e-49 | -8.615850e-47 |
| Msa0163980 | Msa1082500 | 0.804462 | 2.134989e-49 | -8.615850e-47 |
| Msa0163980 | Msa1085200 | 0.808141 | 3.583098e-50 | -8.615850e-47 |
| Msa0163980 | Msa1093530 | 0.814137 | 1.795373e-51 | -8.615850e-47 |
| Msa0163980 | Msa1108160 | 0.810543 | 1.094118e-50 | -8.615850e-47 |
| Msa0163980 | Msa1123380 | 0.807545 | 4.797368e-50 | -8.615850e-47 |
| Msa0163980 | Msa1125000 | 0.803829 | 2.891437e-49 | -8.615850e-47 |
| Msa0163980 | Msa1125940 | 0.818961 | 1.491738e-52 | -8.615850e-47 |
| Msa0163980 | Msa1151910 | 0.824843 | 6.479129e-54 | -8.615850e-47 |
| Msa0163980 | Msa1167280 | 0.810490 | 1.123231e-50 | -8.615850e-47 |
| Msa0163980 | Msa1172450 | 0.940362 | 2.657632e-100 | -8.615850e-47 |
| Msa0163980 | Msa1172670 | 0.802900 | 4.503686e-49 | -8.615850e-47 |
| Msa0163980 | Msa1179460 | 0.816331 | 5.843671e-52 | -8.615850e-47 |
| Msa0163980 | Msa1186060 | 0.814390 | 1.578742e-51 | -8.615850e-47 |
| Msa0163980 | Msa1190400 | 0.805651 | 1.204126e-49 | -8.615850e-47 |
| Msa0163980 | Msa1197590 | 0.808114 | 3.631079e-50 | -8.615850e-47 |
| Msa0163980 | Msa1205960 | 0.818476 | 1.921281e-52 | -8.615850e-47 |
| Msa0163980 | Msa1209460 | 0.816434 | 5.541089e-52 | -8.615850e-47 |
| Msa0163980 | Msa1218600 | 0.817897 | 2.598578e-52 | -8.615850e-47 |
| Msa0163980 | Msa1242230 | 0.802472 | 5.521031e-49 | -8.615850e-47 |
| Msa0163980 | Msa1271290 | 0.805616 | 1.225150e-49 | -8.615850e-47 |
| Msa0163980 | Msa1283860 | 0.809956 | 1.464487e-50 | -8.615850e-47 |
| Msa0163980 | Msa1300490 | 0.800952 | 1.131903e-48 | -8.615850e-47 |
| Msa0163980 | Msa1303250 | 0.824627 | 7.283967e-54 | -8.615850e-47 |
| Msa0163980 | Msa1320410 | 0.801329 | 9.477842e-49 | -8.615850e-47 |
| Msa0163980 | Msa1322860 | 0.803004 | 4.287416e-49 | -8.615850e-47 |
| Msa0163980 | Msa1329920 | 0.805609 | 1.229174e-49 | -8.615850e-47 |
| Msa0163980 | Msa1346370 | 0.811260 | 7.650453e-51 | -8.615850e-47 |
| Msa0163980 | Msa1351760 | 0.802079 | 6.651602e-49 | -8.615850e-47 |
| Msa0163980 | Msa1374550 | 0.829235 | 5.765014e-55 | -8.615850e-47 |
| Msa0163980 | Msa1397250 | 0.811125 | 8.186742e-51 | -8.615850e-47 |
| Msa0163980 | Msa1401150 | 0.818608 | 1.793456e-52 | -8.615850e-47 |
| Msa0163980 | Msa1430240 | 0.811424 | 7.050451e-51 | -8.615850e-47 |
| Msa0163980 | Msa1438250 | 0.826246 | 3.014167e-54 | -8.615850e-47 |
| Msa0163980 | Msa1457910 | 0.800388 | 1.475684e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163980 | MtrunA17_Chr1g0179191 | 95.954 | 519 | 11 | 4 | 1 | 517 | 1 | 511 | 0.0 | 1025 |
| Msa0163980 | MtrunA17_Chr7g0265831 | 51.103 | 544 | 150 | 18 | 14 | 516 | 6 | 474 | 2.18e-151 | 441 |
| Msa0163980 | MtrunA17_Chr1g0198171 | 40.000 | 400 | 172 | 16 | 25 | 380 | 10 | 385 | 5.19e-77 | 250 |
| Msa0163980 | MtrunA17_Chr6g0463941 | 38.567 | 293 | 133 | 5 | 130 | 376 | 46 | 337 | 5.84e-41 | 156 |
| Msa0163980 | MtrunA17_Chr6g0463941 | 47.312 | 93 | 47 | 2 | 133 | 224 | 460 | 551 | 5.11e-20 | 93.6 |
| Msa0163980 | MtrunA17_Chr1g0201911 | 32.542 | 295 | 162 | 4 | 137 | 403 | 55 | 340 | 2.13e-35 | 139 |
| Msa0163980 | MtrunA17_Chr1g0201911 | 40.458 | 131 | 71 | 4 | 126 | 255 | 361 | 485 | 3.06e-22 | 100 |
| Msa0163980 | MtrunA17_Chr1g0201941 | 65.263 | 95 | 30 | 2 | 131 | 223 | 49 | 142 | 1.07e-32 | 132 |
| Msa0163980 | MtrunA17_Chr1g0201941 | 46.000 | 100 | 51 | 3 | 128 | 226 | 446 | 543 | 1.98e-20 | 94.7 |
| Msa0163980 | MtrunA17_Chr1g0201941 | 39.535 | 86 | 52 | 0 | 291 | 376 | 272 | 357 | 1.88e-13 | 73.2 |
| Msa0163980 | MtrunA17_Chr1g0190851 | 29.046 | 241 | 145 | 8 | 138 | 372 | 104 | 324 | 1.40e-14 | 76.3 |
| Msa0163980 | MtrunA17_Chr1g0190851 | 37.607 | 117 | 58 | 4 | 137 | 239 | 418 | 533 | 1.95e-12 | 69.7 |
| Msa0163980 | MtrunA17_Chr7g0273941 | 36.220 | 127 | 70 | 3 | 110 | 226 | 354 | 479 | 1.60e-14 | 75.9 |
| Msa0163980 | MtrunA17_Chr2g0290511 | 38.053 | 113 | 65 | 3 | 132 | 240 | 257 | 368 | 3.79e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163980 | AT5G03680.1 | 57.929 | 309 | 100 | 9 | 137 | 421 | 119 | 421 | 4.68e-101 | 316 |
| Msa0163980 | AT3G10000.1 | 44.170 | 446 | 198 | 13 | 104 | 514 | 49 | 478 | 6.61e-100 | 310 |
| Msa0163980 | AT3G10000.2 | 42.152 | 446 | 197 | 14 | 104 | 514 | 49 | 468 | 1.09e-89 | 283 |
| Msa0163980 | AT1G76890.2 | 33.654 | 312 | 135 | 7 | 130 | 376 | 34 | 338 | 2.07e-39 | 151 |
| Msa0163980 | AT1G76890.2 | 45.098 | 102 | 54 | 2 | 134 | 234 | 394 | 494 | 3.57e-19 | 91.3 |
| Msa0163980 | AT1G76880.1 | 63.918 | 97 | 32 | 2 | 137 | 233 | 61 | 154 | 1.67e-31 | 129 |
| Msa0163980 | AT1G76880.1 | 44.538 | 119 | 55 | 4 | 118 | 226 | 380 | 497 | 8.40e-19 | 90.1 |
| Msa0163980 | AT1G33240.3 | 64.368 | 87 | 30 | 1 | 137 | 223 | 62 | 147 | 1.25e-29 | 123 |
| Msa0163980 | AT1G33240.3 | 43.820 | 89 | 48 | 2 | 137 | 224 | 435 | 522 | 1.69e-16 | 82.8 |
| Msa0163980 | AT1G33240.1 | 64.368 | 87 | 30 | 1 | 137 | 223 | 62 | 147 | 1.74e-29 | 123 |
| Msa0163980 | AT1G33240.1 | 43.820 | 89 | 48 | 2 | 137 | 224 | 435 | 522 | 1.70e-16 | 83.2 |
| Msa0163980 | AT1G33240.2 | 43.820 | 89 | 48 | 2 | 137 | 224 | 396 | 483 | 1.93e-16 | 82.8 |
| Msa0163980 | AT1G33240.2 | 72.340 | 47 | 13 | 0 | 177 | 223 | 62 | 108 | 2.78e-15 | 79.3 |
| Msa0163980 | AT5G28300.1 | 39.604 | 101 | 49 | 4 | 137 | 226 | 459 | 558 | 1.25e-12 | 70.9 |
| Msa0163980 | AT5G47660.1 | 42.857 | 91 | 44 | 4 | 137 | 224 | 303 | 388 | 1.80e-11 | 66.6 |
Find 157 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTAGCTTCTTTAAATTT+AGG | 0.106926 | 1_4:+42552882 | None:intergenic |
| ACATGTATTTGATGTGTTTA+AGG | 0.119061 | 1_4:-42550494 | Msa0163980:three_prime_UTR |
| GGAAATTTGTGGGAGAATTT+TGG | 0.154763 | 1_4:-42550739 | Msa0163980:CDS |
| ATTATTGTTGTTGACAAAAT+TGG | 0.173365 | 1_4:+42551530 | None:intergenic |
| GGAAAAGTTCACTTGCTTAT+TGG | 0.193573 | 1_4:-42550421 | Msa0163980:three_prime_UTR |
| CTCTCATCAGTTAATGGTTT+TGG | 0.213143 | 1_4:+42550695 | None:intergenic |
| CATAAACTCTCATCAGTTAA+TGG | 0.217027 | 1_4:+42550689 | None:intergenic |
| ATGGAAGCTTTGAAGAATTT+AGG | 0.224314 | 1_4:-42551132 | Msa0163980:CDS |
| AGCAAGGGATGCTGCTTTAA+TGG | 0.232544 | 1_4:-42551151 | Msa0163980:CDS |
| CGTCAACTTGAAGCTTTATA+TGG | 0.241815 | 1_4:-42551585 | Msa0163980:CDS |
| TCCTGAGACCACAGGATATA+TGG | 0.242867 | 1_4:-42552979 | Msa0163980:CDS |
| CATGATCATAAGGGTGTAAA+TGG | 0.261143 | 1_4:-42551078 | Msa0163980:CDS |
| GATTAGCTTCTTTAAATTTA+GGG | 0.283381 | 1_4:+42552883 | None:intergenic |
| GGCATGATGGTAAGCATTAC+AGG | 0.285238 | 1_4:-42551614 | Msa0163980:CDS |
| CATGTATTTGATGTGTTTAA+GGG | 0.291153 | 1_4:-42550493 | Msa0163980:three_prime_UTR |
| TTGTTGACAAAATTGGTTTC+TGG | 0.294784 | 1_4:+42551537 | None:intergenic |
| TATGATCATTGTGAGGGTTT+TGG | 0.304071 | 1_4:+42551481 | None:intergenic |
| AGGAGGTAGAGAAATGATTA+AGG | 0.310468 | 1_4:-42551112 | Msa0163980:CDS |
| GTTCTGATAATTGTACTCTA+AGG | 0.329879 | 1_4:-42550987 | Msa0163980:CDS |
| TCTCATACTGTTGTTGTTGT+TGG | 0.335695 | 1_4:+42553126 | None:intergenic |
| GCTTCTTTAGTGTGCTGTTT+GGG | 0.336131 | 1_4:-42550259 | Msa0163980:three_prime_UTR |
| AAGGGTGTAAATGGAATAAC+TGG | 0.343913 | 1_4:-42551069 | Msa0163980:CDS |
| GATCCTGTCGTGCAGGAAAA+AGG | 0.344541 | 1_4:+42553484 | None:intergenic |
| TTTGGCTATTACTTGTTTGT+TGG | 0.348056 | 1_4:+42551499 | None:intergenic |
| TACTCTAAGGGATGATTCTA+AGG | 0.354428 | 1_4:-42550974 | Msa0163980:CDS |
| CTGTCGGTATAGATGGGAAA+TGG | 0.365777 | 1_4:+42553237 | None:intergenic |
| CAAATACATGTTTGGAATCA+TGG | 0.367407 | 1_4:+42550506 | None:intergenic |
| GTTTCTGTGTATTGATCATA+TGG | 0.368157 | 1_4:-42550207 | Msa0163980:three_prime_UTR |
| GATCGATCTAAATCCATGTT+TGG | 0.373856 | 1_4:-42550642 | Msa0163980:three_prime_UTR |
| TGCTTCTTTAGTGTGCTGTT+TGG | 0.375364 | 1_4:-42550260 | Msa0163980:three_prime_UTR |
| AAACACATCAAATACATGTT+TGG | 0.382363 | 1_4:+42550498 | None:intergenic |
| TATTACTTGTTTGTTGGAAA+TGG | 0.383105 | 1_4:+42551505 | None:intergenic |
| TGGTTTCTGGTAGAGAAGTT+TGG | 0.387708 | 1_4:+42551550 | None:intergenic |
| TTTACTTTAATGCATGAAGA+TGG | 0.394689 | 1_4:-42550371 | Msa0163980:three_prime_UTR |
| TTTAAAGAAGCTAATCAAAA+AGG | 0.402136 | 1_4:-42552876 | Msa0163980:CDS |
| GTTGTTGTTATTGCTGTTGA+AGG | 0.404416 | 1_4:+42553035 | None:intergenic |
| AGAGTAGTGGAAGAAGAAGT+TGG | 0.406533 | 1_4:-42551374 | Msa0163980:CDS |
| CCCATATATCCTGTGGTCTC+AGG | 0.410413 | 1_4:+42552978 | None:intergenic |
| TCACCTTCTGATTCTAATGT+TGG | 0.411980 | 1_4:-42550811 | Msa0163980:CDS |
| GTAGCCGCTGTCGGTATAGA+TGG | 0.413426 | 1_4:+42553230 | None:intergenic |
| TTAACAAAGCTGTCAGATTC+CGG | 0.414479 | 1_4:+42553186 | None:intergenic |
| GTTTGGATTGACAGTGAGTT+CGG | 0.419513 | 1_4:-42550625 | Msa0163980:three_prime_UTR |
| AGAGTAAGAGTTTCTTGTCT+TGG | 0.432446 | 1_4:+42552930 | None:intergenic |
| TGAAGAAGCTCATGATCATA+AGG | 0.433018 | 1_4:-42551088 | Msa0163980:CDS |
| TTGAGTTAGTAGTGAGACTA+AGG | 0.450800 | 1_4:+42551457 | None:intergenic |
| ATTCAAAATCAAAATGAAGA+TGG | 0.456037 | 1_4:-42551039 | Msa0163980:CDS |
| TTTGGAGTAATGAGAGAGCA+TGG | 0.461952 | 1_4:-42551179 | Msa0163980:CDS |
| CAGTATGAGATGATGATGTT+AGG | 0.464776 | 1_4:-42553113 | Msa0163980:CDS |
| CATATTGTTGTTGCTGCTGT+TGG | 0.466902 | 1_4:+42553294 | None:intergenic |
| GTTGTTGCTGCTGTTGGTGA+TGG | 0.468711 | 1_4:+42553300 | None:intergenic |
| GTTTAGTGATGGAGATAAAG+TGG | 0.469595 | 1_4:-42550442 | Msa0163980:three_prime_UTR |
| GTTATTATGTTTACATCAGT+TGG | 0.471072 | 1_4:-42550308 | Msa0163980:three_prime_UTR |
| AAGACAAAAGAAGGTAAAGC+AGG | 0.472275 | 1_4:-42551639 | Msa0163980:CDS |
| TTGGAATATGACAAAAGATC+AGG | 0.472707 | 1_4:-42550402 | Msa0163980:three_prime_UTR |
| ATGATTCTAAGGAAGGAAAC+AGG | 0.472723 | 1_4:-42550963 | Msa0163980:CDS |
| GTTATTGCTGTTGAAGGTGG+TGG | 0.474694 | 1_4:+42553041 | None:intergenic |
| AATGTTGGAAATGTTGCTAA+TGG | 0.476371 | 1_4:-42550796 | Msa0163980:CDS |
| ATCTATACCGACAGCGGCTA+CGG | 0.482932 | 1_4:-42553228 | Msa0163980:CDS |
| GGAGGAAACAAGAGGCCAAA+AGG | 0.485530 | 1_4:-42551221 | Msa0163980:CDS |
| TTACTTTAATGCATGAAGAT+GGG | 0.488805 | 1_4:-42550370 | Msa0163980:three_prime_UTR |
| AGCTGTCAGATTCCGGTGAC+CGG | 0.495878 | 1_4:+42553193 | None:intergenic |
| AAGGCTCAAGTTTGAAGCTA+AGG | 0.497088 | 1_4:+42553503 | None:intergenic |
| GATACGTCGTCGTCTGATGA+TGG | 0.498562 | 1_4:-42551420 | Msa0163980:CDS |
| CTTTCCTTTCATGATTAGTG+AGG | 0.500450 | 1_4:-42550764 | Msa0163980:CDS |
| GATCTAAGACAGCTAGTGAA+TGG | 0.501254 | 1_4:-42553272 | Msa0163980:CDS |
| GACACTTGAGGACAAGGAAA+AGG | 0.501629 | 1_4:-42551268 | Msa0163980:CDS |
| CATGTATATATGAGAGGCTA+GGG | 0.504957 | 1_4:+42553372 | None:intergenic |
| GGAAGGAAACAGGAAGAGAA+AGG | 0.505443 | 1_4:-42550953 | Msa0163980:CDS |
| GGGCGTTAAGAGAAGAAGAG+TGG | 0.505945 | 1_4:-42551242 | Msa0163980:CDS |
| TCATGTATATATGAGAGGCT+AGG | 0.508330 | 1_4:+42553371 | None:intergenic |
| TTCAAAATCAAAATGAAGAT+GGG | 0.510698 | 1_4:-42551038 | Msa0163980:CDS |
| GAAGAAAGCAGCGGCAGAGT+CGG | 0.518458 | 1_4:+42553462 | None:intergenic |
| GGTGATGACCATGATTGTTA+TGG | 0.519317 | 1_4:+42553333 | None:intergenic |
| CAATGTTCTATGTACAATCA+AGG | 0.520932 | 1_4:-42550904 | Msa0163980:CDS |
| AATGTGTTCAAGTTTAGTGA+TGG | 0.522877 | 1_4:-42550453 | Msa0163980:three_prime_UTR |
| GCTGCTGTTGGTGATGGTGA+TGG | 0.523244 | 1_4:+42553306 | None:intergenic |
| CTAAGGGATGATTCTAAGGA+AGG | 0.524712 | 1_4:-42550970 | Msa0163980:CDS |
| CTAGAGACTTCATCCCATAA+AGG | 0.525783 | 1_4:+42552852 | None:intergenic |
| ATTGCTGTTGAAGGTGGTGG+TGG | 0.527775 | 1_4:+42553044 | None:intergenic |
| TAGTGAGGGTGGAAATTTGT+GGG | 0.530887 | 1_4:-42550749 | Msa0163980:CDS |
| TGTCGGTATAGATGGGAAAT+GGG | 0.531485 | 1_4:+42553238 | None:intergenic |
| CCTGAGACCACAGGATATAT+GGG | 0.531681 | 1_4:-42552978 | Msa0163980:CDS |
| GTTGGTGATGGTGATGGTGA+GGG | 0.532276 | 1_4:+42553312 | None:intergenic |
| AACTCATCCGTAGCCGCTGT+CGG | 0.532933 | 1_4:+42553221 | None:intergenic |
| TTTCCTTTCATGATTAGTGA+GGG | 0.536493 | 1_4:-42550763 | Msa0163980:CDS |
| AAACTACAAAGGAATGATCA+TGG | 0.537652 | 1_4:-42550838 | Msa0163980:CDS |
| TATTACAAGAAGACAAAAGA+AGG | 0.546022 | 1_4:-42551648 | Msa0163980:CDS |
| GTTGTTATTGCTGTTGAAGG+TGG | 0.546595 | 1_4:+42553038 | None:intergenic |
| AAGGGAAAGAAGAAGAGTAG+TGG | 0.550255 | 1_4:-42551387 | Msa0163980:CDS |
| AAACATGGATTTAGATCGAT+CGG | 0.551290 | 1_4:+42550644 | None:intergenic |
| TGAAGCTAAGGACATTGGTA+TGG | 0.551512 | 1_4:+42553515 | None:intergenic |
| CTTTATGGGATGAAGTCTCT+AGG | 0.552690 | 1_4:-42552851 | Msa0163980:intron |
| GATGACCACCATAACAATCA+TGG | 0.553172 | 1_4:-42553341 | Msa0163980:CDS |
| TTGTCTTGGCCATCTTCCAG+TGG | 0.560726 | 1_4:+42552944 | None:intergenic |
| TTCTGATAATTGTACTCTAA+GGG | 0.561784 | 1_4:-42550986 | Msa0163980:CDS |
| GAGATGCTTCCACTGGAAGA+TGG | 0.562372 | 1_4:-42552953 | Msa0163980:CDS |
| ATGGGTGGAGATGCTTCCAC+TGG | 0.563031 | 1_4:-42552960 | Msa0163980:CDS |
| GAGGAAACAAGAGGCCAAAA+GGG | 0.564460 | 1_4:-42551220 | Msa0163980:CDS |
| GAAGCTTTGAAGAATTTAGG+AGG | 0.565385 | 1_4:-42551129 | Msa0163980:CDS |
| GGTAAAGCAGGAAGGCATGA+TGG | 0.566904 | 1_4:-42551627 | Msa0163980:CDS |
| GATGTAAACATAATAACTGA+AGG | 0.570199 | 1_4:+42550314 | None:intergenic |
| TAGTGGAAGAAGAAGTTGGA+AGG | 0.571374 | 1_4:-42551370 | Msa0163980:CDS |
| CCACCCTCACTAATCATGAA+AGG | 0.571997 | 1_4:+42550760 | None:intergenic |
| CCTTTCATGATTAGTGAGGG+TGG | 0.572090 | 1_4:-42550760 | Msa0163980:CDS |
| AGAGTCGGATCCTGTCGTGC+AGG | 0.572753 | 1_4:+42553477 | None:intergenic |
| TTTCCAACATTAGAATCAGA+AGG | 0.574657 | 1_4:+42550808 | None:intergenic |
| CTGAAGAACATGGATATCAA+AGG | 0.576035 | 1_4:-42551713 | Msa0163980:CDS |
| TCTATGTACAATCAAGGAAG+TGG | 0.576269 | 1_4:-42550898 | Msa0163980:CDS |
| GAGAGCATGGATTGAAGCAA+GGG | 0.577276 | 1_4:-42551166 | Msa0163980:CDS |
| GGTTGAAGAAGTAATAAGTG+AGG | 0.581187 | 1_4:+42553431 | None:intergenic |
| GAAGAAGCTCATGATCATAA+GGG | 0.582156 | 1_4:-42551087 | Msa0163980:CDS |
| AGAGAGCATGGATTGAAGCA+AGG | 0.583741 | 1_4:-42551167 | Msa0163980:CDS |
| GTTGAAGAAGTAATAAGTGA+GGG | 0.585125 | 1_4:+42553432 | None:intergenic |
| CACTTGTGTACACACAGACA+TGG | 0.589280 | 1_4:-42553540 | Msa0163980:five_prime_UTR |
| TGTGAAGACACTTGAGGACA+AGG | 0.590043 | 1_4:-42551274 | Msa0163980:CDS |
| CTAAAGAAGCATGAGGGGAA+AGG | 0.590414 | 1_4:+42550272 | None:intergenic |
| GAGATGATGATGTTAGGTCG+TGG | 0.590941 | 1_4:-42553107 | Msa0163980:CDS |
| TAGCCGCTGTCGGTATAGAT+GGG | 0.591582 | 1_4:+42553231 | None:intergenic |
| GAACATGGATATCAAAGGAG+TGG | 0.592797 | 1_4:-42551708 | Msa0163980:CDS |
| GAAACAAGAGGCCAAAAGGG+TGG | 0.597918 | 1_4:-42551217 | Msa0163980:CDS |
| TAAGGCTATGATCATTGTGA+GGG | 0.598377 | 1_4:+42551475 | None:intergenic |
| AAGTTTGAAGCTAAGGACAT+TGG | 0.602118 | 1_4:+42553510 | None:intergenic |
| TGTTGGTGATGGTGATGGTG+AGG | 0.604876 | 1_4:+42553311 | None:intergenic |
| CAAAAGAAGGTAAAGCAGGA+AGG | 0.606280 | 1_4:-42551635 | Msa0163980:CDS |
| AGGATAATGTCTGAAGAACA+TGG | 0.616822 | 1_4:-42551723 | Msa0163980:CDS |
| CTAAGGCTATGATCATTGTG+AGG | 0.617388 | 1_4:+42551474 | None:intergenic |
| AACACTAGCACTAGCAGTGG+TGG | 0.618195 | 1_4:+42553007 | None:intergenic |
| TGATGTTAATGATCAAAGAG+AGG | 0.618449 | 1_4:-42550869 | Msa0163980:CDS |
| TGATGATGGCAATGATGTGA+AGG | 0.618528 | 1_4:-42551406 | Msa0163980:CDS |
| GATGACCATGATTGTTATGG+TGG | 0.618743 | 1_4:+42553336 | None:intergenic |
| CGTTAAGAGAAGAAGAGTGG+AGG | 0.619013 | 1_4:-42551239 | Msa0163980:CDS |
| GTTTCAACTCCTGAGACCAC+AGG | 0.619321 | 1_4:-42552987 | Msa0163980:CDS |
| TAAACATGTACTGTGCATGC+AGG | 0.622094 | 1_4:-42550236 | Msa0163980:three_prime_UTR |
| ATGTAAACATAATAACTGAA+GGG | 0.622934 | 1_4:+42550315 | None:intergenic |
| AGCACACTAAAGAAGCATGA+GGG | 0.623517 | 1_4:+42550266 | None:intergenic |
| AAGAAGCATGAGGGGAAAGG+AGG | 0.625736 | 1_4:+42550275 | None:intergenic |
| GACAGCTAGTGAATGGAACA+AGG | 0.626911 | 1_4:-42553265 | Msa0163980:CDS |
| ATCTTGAATAGTACTGTGAG+AGG | 0.628009 | 1_4:-42551009 | Msa0163980:CDS |
| ATCTCCACCCATATATCCTG+TGG | 0.628636 | 1_4:+42552971 | None:intergenic |
| AGAAGAGTGGAGGAAACAAG+AGG | 0.631900 | 1_4:-42551229 | Msa0163980:CDS |
| TGAGGACAAGGAAAAGGAGA+GGG | 0.634562 | 1_4:-42551262 | Msa0163980:CDS |
| AGGAGATTGTGAAACTACAA+AGG | 0.636318 | 1_4:-42550849 | Msa0163980:CDS |
| GAAGCTTGTGGAGAAGCAAG+AGG | 0.641062 | 1_4:-42551313 | Msa0163980:CDS |
| CAGCACACTAAAGAAGCATG+AGG | 0.646704 | 1_4:+42550265 | None:intergenic |
| TGCACAAATGAAGAAGCTTG+TGG | 0.649032 | 1_4:-42551325 | Msa0163980:CDS |
| TTGTGGAGAAGCAAGAGGAG+TGG | 0.656273 | 1_4:-42551308 | Msa0163980:CDS |
| ACTCACTGTCAATCCAAACA+TGG | 0.659105 | 1_4:+42550629 | None:intergenic |
| ACTTGTGTACACACAGACAT+GGG | 0.659567 | 1_4:-42553539 | Msa0163980:five_prime_UTR |
| GGAGAGAGTGAAGAAAGCAG+CGG | 0.666908 | 1_4:+42553453 | None:intergenic |
| GCACACTAAAGAAGCATGAG+GGG | 0.667380 | 1_4:+42550267 | None:intergenic |
| TGAAACACTAGCACTAGCAG+TGG | 0.671025 | 1_4:+42553004 | None:intergenic |
| TTGAGGACAAGGAAAAGGAG+AGG | 0.672502 | 1_4:-42551263 | Msa0163980:CDS |
| GATGATGGCAATGATGTGAA+GGG | 0.683964 | 1_4:-42551405 | Msa0163980:CDS |
| TTAGTGAGGGTGGAAATTTG+TGG | 0.685166 | 1_4:-42550750 | Msa0163980:CDS |
| GAGACCACAGGATATATGGG+TGG | 0.690993 | 1_4:-42552975 | Msa0163980:CDS |
| TAAGCTTGTGAAGACACTTG+AGG | 0.695179 | 1_4:-42551280 | Msa0163980:CDS |
| TTTCCCATCTATACCGACAG+CGG | 0.709498 | 1_4:-42553234 | Msa0163980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATGAAATTTAATAAA+GGG | + | chr1_4:42551545-42551564 | None:intergenic | 10.0% |
| !! | GTAAAGATGAAATTTAATAA+AGG | + | chr1_4:42551546-42551565 | None:intergenic | 15.0% |
| !! | AATTAATAATGACATTATTG+TGG | + | chr1_4:42551936-42551955 | None:intergenic | 15.0% |
| !! | ATGAGATTGAAAAAAAAGAA+TGG | + | chr1_4:42550402-42550421 | None:intergenic | 20.0% |
| !!! | TTTTTTCATGTATATATGAG+AGG | + | chr1_4:42550446-42550465 | None:intergenic | 20.0% |
| !! | CTCATATATACATGAAAAAA+TGG | - | chr1_4:42550446-42550465 | Msa0163980:three_prime_UTR | 20.0% |
| !!! | GATTAGCTTCTTTAAATTTA+GGG | + | chr1_4:42550929-42550948 | None:intergenic | 20.0% |
| !!! | TGATTAGCTTCTTTAAATTT+AGG | + | chr1_4:42550930-42550949 | None:intergenic | 20.0% |
| !! | TTTAAAGAAGCTAATCAAAA+AGG | - | chr1_4:42550933-42550952 | Msa0163980:CDS | 20.0% |
| !! | ACATAAATTACATCTACATA+AGG | + | chr1_4:42552022-42552041 | None:intergenic | 20.0% |
| !!! | ATATTTGTTTGATACCATTT+TGG | - | chr1_4:42552061-42552080 | Msa0163980:intron | 20.0% |
| !!! | ATTATTGTTGTTGACAAAAT+TGG | + | chr1_4:42552282-42552301 | None:intergenic | 20.0% |
| !! | ATTCAAAATCAAAATGAAGA+TGG | - | chr1_4:42552770-42552789 | Msa0163980:intron | 20.0% |
| !! | TTCAAAATCAAAATGAAGAT+GGG | - | chr1_4:42552771-42552790 | Msa0163980:intron | 20.0% |
| !!! | TTAAAGCTTTTACAAAATCA+CGG | - | chr1_4:42553253-42553272 | Msa0163980:CDS | 20.0% |
| !! | ATGTAAACATAATAACTGAA+GGG | + | chr1_4:42553497-42553516 | None:intergenic | 20.0% |
| ! | TAATCAAAAAGGTCCTTTAT+GGG | - | chr1_4:42550944-42550963 | Msa0163980:CDS | 25.0% |
| ! | GTTAAGCTTAATATGAGTAT+AGG | - | chr1_4:42551335-42551354 | Msa0163980:CDS | 25.0% |
| !! | AAATTTTGCACTTAAAAGAG+GGG | + | chr1_4:42551518-42551537 | None:intergenic | 25.0% |
| !! | CAAATTTTGCACTTAAAAGA+GGG | + | chr1_4:42551519-42551538 | None:intergenic | 25.0% |
| !! | ACAAATTTTGCACTTAAAAG+AGG | + | chr1_4:42551520-42551539 | None:intergenic | 25.0% |
| !!! | TAGTTATGTTTGCTATAACT+AGG | - | chr1_4:42551751-42551770 | Msa0163980:intron | 25.0% |
| ! | TATTACAAGAAGACAAAAGA+AGG | - | chr1_4:42552161-42552180 | Msa0163980:intron | 25.0% |
| !! | TATTACTTGTTTGTTGGAAA+TGG | + | chr1_4:42552307-42552326 | None:intergenic | 25.0% |
| !! | TGGAAAAAGAACAAAAGTTT+TGG | - | chr1_4:42552612-42552631 | Msa0163980:intron | 25.0% |
| ! | TTCTGATAATTGTACTCTAA+GGG | - | chr1_4:42552823-42552842 | Msa0163980:intron | 25.0% |
| !! | CACAGTTTTTAACAAAATCA+GGG | + | chr1_4:42553228-42553247 | None:intergenic | 25.0% |
| !! | TCACAGTTTTTAACAAAATC+AGG | + | chr1_4:42553229-42553248 | None:intergenic | 25.0% |
| ! | AAACACATCAAATACATGTT+TGG | + | chr1_4:42553314-42553333 | None:intergenic | 25.0% |
| ! | ACATGTATTTGATGTGTTTA+AGG | - | chr1_4:42553315-42553334 | Msa0163980:CDS | 25.0% |
| ! | CATGTATTTGATGTGTTTAA+GGG | - | chr1_4:42553316-42553335 | Msa0163980:CDS | 25.0% |
| ! | TTTACTTTAATGCATGAAGA+TGG | - | chr1_4:42553438-42553457 | Msa0163980:five_prime_UTR | 25.0% |
| ! | TTACTTTAATGCATGAAGAT+GGG | - | chr1_4:42553439-42553458 | Msa0163980:five_prime_UTR | 25.0% |
| ! | GATGTAAACATAATAACTGA+AGG | + | chr1_4:42553498-42553517 | None:intergenic | 25.0% |
| ! | GTTATTATGTTTACATCAGT+TGG | - | chr1_4:42553501-42553520 | Msa0163980:five_prime_UTR | 25.0% |
| GTTGAAGAAGTAATAAGTGA+GGG | + | chr1_4:42550380-42550399 | None:intergenic | 30.0% | |
| CTAATCAAAAAGGTCCTTTA+TGG | - | chr1_4:42550943-42550962 | Msa0163980:CDS | 30.0% | |
| CAGAATTTAGTAAATCCCAA+AGG | + | chr1_4:42551233-42551252 | None:intergenic | 30.0% | |
| !! | TTGGAGTTAATTTGTTTGCT+GGG | - | chr1_4:42551270-42551289 | Msa0163980:CDS | 30.0% |
| TAGCAAACATAACTAAGCAT+AGG | + | chr1_4:42551746-42551765 | None:intergenic | 30.0% | |
| TCACATGATTAGACTTCTTT+AGG | - | chr1_4:42551845-42551864 | Msa0163980:intron | 30.0% | |
| !!! | TGTTTGATACCATTTTGGTT+AGG | - | chr1_4:42552066-42552085 | Msa0163980:intron | 30.0% |
| AGACATTATCCTAACCAAAA+TGG | + | chr1_4:42552078-42552097 | None:intergenic | 30.0% | |
| ! | TTGTTGACAAAATTGGTTTC+TGG | + | chr1_4:42552275-42552294 | None:intergenic | 30.0% |
| TTTGGCTATTACTTGTTTGT+TGG | + | chr1_4:42552313-42552332 | None:intergenic | 30.0% | |
| !! | ATGGAAGCTTTGAAGAATTT+AGG | - | chr1_4:42552677-42552696 | Msa0163980:intron | 30.0% |
| GTTCTGATAATTGTACTCTA+AGG | - | chr1_4:42552822-42552841 | Msa0163980:intron | 30.0% | |
| CAATGTTCTATGTACAATCA+AGG | - | chr1_4:42552905-42552924 | Msa0163980:CDS | 30.0% | |
| TGATGTTAATGATCAAAGAG+AGG | - | chr1_4:42552940-42552959 | Msa0163980:CDS | 30.0% | |
| AAACTACAAAGGAATGATCA+TGG | - | chr1_4:42552971-42552990 | Msa0163980:CDS | 30.0% | |
| TTTCCAACATTAGAATCAGA+AGG | + | chr1_4:42553004-42553023 | None:intergenic | 30.0% | |
| AATGTTGGAAATGTTGCTAA+TGG | - | chr1_4:42553013-42553032 | Msa0163980:CDS | 30.0% | |
| TTTCCTTTCATGATTAGTGA+GGG | - | chr1_4:42553046-42553065 | Msa0163980:CDS | 30.0% | |
| CATAAACTCTCATCAGTTAA+TGG | + | chr1_4:42553123-42553142 | None:intergenic | 30.0% | |
| AAACATGGATTTAGATCGAT+CGG | + | chr1_4:42553168-42553187 | None:intergenic | 30.0% | |
| ! | AGTTTTTAACAAAATCAGGG+TGG | + | chr1_4:42553225-42553244 | None:intergenic | 30.0% |
| ! | CAAATACATGTTTGGAATCA+TGG | + | chr1_4:42553306-42553325 | None:intergenic | 30.0% |
| ! | AATGTGTTCAAGTTTAGTGA+TGG | - | chr1_4:42553356-42553375 | Msa0163980:exon | 30.0% |
| TTGGAATATGACAAAAGATC+AGG | - | chr1_4:42553407-42553426 | Msa0163980:five_prime_UTR | 30.0% | |
| ! | GTTTCTGTGTATTGATCATA+TGG | - | chr1_4:42553602-42553621 | Msa0163980:five_prime_UTR | 30.0% |
| ! | AAGTTTGAAGCTAAGGACAT+TGG | + | chr1_4:42550302-42550321 | None:intergenic | 35.0% |
| GGTTGAAGAAGTAATAAGTG+AGG | + | chr1_4:42550381-42550400 | None:intergenic | 35.0% | |
| CATGTATATATGAGAGGCTA+GGG | + | chr1_4:42550440-42550459 | None:intergenic | 35.0% | |
| TCATGTATATATGAGAGGCT+AGG | + | chr1_4:42550441-42550460 | None:intergenic | 35.0% | |
| TTAACAAAGCTGTCAGATTC+CGG | + | chr1_4:42550626-42550645 | None:intergenic | 35.0% | |
| ! | TTTTGATGTGTCTGTGGATT+AGG | + | chr1_4:42550663-42550682 | None:intergenic | 35.0% |
| ! | TCTCATACTGTTGTTGTTGT+TGG | + | chr1_4:42550686-42550705 | None:intergenic | 35.0% |
| ! | CAGTATGAGATGATGATGTT+AGG | - | chr1_4:42550696-42550715 | Msa0163980:exon | 35.0% |
| ! | GTTGTTGTTATTGCTGTTGA+AGG | + | chr1_4:42550777-42550796 | None:intergenic | 35.0% |
| AGAGTAAGAGTTTCTTGTCT+TGG | + | chr1_4:42550882-42550901 | None:intergenic | 35.0% | |
| TGAGTATGAAGAAGCTATGT+GGG | + | chr1_4:42551045-42551064 | None:intergenic | 35.0% | |
| TTGAGTATGAAGAAGCTATG+TGG | + | chr1_4:42551046-42551065 | None:intergenic | 35.0% | |
| ! | TCTAGATTTTGTAGCTCCTT+TGG | - | chr1_4:42551214-42551233 | Msa0163980:CDS | 35.0% |
| ! | CTAGATTTTGTAGCTCCTTT+GGG | - | chr1_4:42551215-42551234 | Msa0163980:CDS | 35.0% |
| !! | CTTGGAGTTAATTTGTTTGC+TGG | - | chr1_4:42551269-42551288 | Msa0163980:CDS | 35.0% |
| !! | TGGAGTTAATTTGTTTGCTG+GGG | - | chr1_4:42551271-42551290 | Msa0163980:CDS | 35.0% |
| !! | TAATTTGTTTGCTGGGGATT+CGG | - | chr1_4:42551277-42551296 | Msa0163980:CDS | 35.0% |
| TGGTGGAATCTTACTAAACT+TGG | + | chr1_4:42551464-42551483 | None:intergenic | 35.0% | |
| TTGTAAGCAAATGCAGACAT+TGG | + | chr1_4:42551637-42551656 | None:intergenic | 35.0% | |
| TATGAAATGACATCAAGCTG+AGG | - | chr1_4:42551662-42551681 | Msa0163980:CDS | 35.0% | |
| !! | TCACACATTTCTAGCTAACT+AGG | - | chr1_4:42551883-42551902 | Msa0163980:intron | 35.0% |
| !! | CACACATTTCTAGCTAACTA+GGG | - | chr1_4:42551884-42551903 | Msa0163980:intron | 35.0% |
| AGGATAATGTCTGAAGAACA+TGG | - | chr1_4:42552086-42552105 | Msa0163980:intron | 35.0% | |
| CTGAAGAACATGGATATCAA+AGG | - | chr1_4:42552096-42552115 | Msa0163980:intron | 35.0% | |
| AAGACAAAAGAAGGTAAAGC+AGG | - | chr1_4:42552170-42552189 | Msa0163980:intron | 35.0% | |
| ! | CGTCAACTTGAAGCTTTATA+TGG | - | chr1_4:42552224-42552243 | Msa0163980:intron | 35.0% |
| ! | TATGATCATTGTGAGGGTTT+TGG | + | chr1_4:42552331-42552350 | None:intergenic | 35.0% |
| TAAGGCTATGATCATTGTGA+GGG | + | chr1_4:42552337-42552356 | None:intergenic | 35.0% | |
| TTGAGTTAGTAGTGAGACTA+AGG | + | chr1_4:42552355-42552374 | None:intergenic | 35.0% | |
| ! | TTGTTCTTTTTCCACCCTTT+TGG | + | chr1_4:42552606-42552625 | None:intergenic | 35.0% |
| !! | GAAGCTTTGAAGAATTTAGG+AGG | - | chr1_4:42552680-42552699 | Msa0163980:intron | 35.0% |
| AGGAGGTAGAGAAATGATTA+AGG | - | chr1_4:42552697-42552716 | Msa0163980:intron | 35.0% | |
| TGAAGAAGCTCATGATCATA+AGG | - | chr1_4:42552721-42552740 | Msa0163980:intron | 35.0% | |
| GAAGAAGCTCATGATCATAA+GGG | - | chr1_4:42552722-42552741 | Msa0163980:intron | 35.0% | |
| ! | CATGATCATAAGGGTGTAAA+TGG | - | chr1_4:42552731-42552750 | Msa0163980:intron | 35.0% |
| ! | AAGGGTGTAAATGGAATAAC+TGG | - | chr1_4:42552740-42552759 | Msa0163980:intron | 35.0% |
| ATCTTGAATAGTACTGTGAG+AGG | - | chr1_4:42552800-42552819 | Msa0163980:intron | 35.0% | |
| ! | TACTCTAAGGGATGATTCTA+AGG | - | chr1_4:42552835-42552854 | Msa0163980:intron | 35.0% |
| ! | ATGATTCTAAGGAAGGAAAC+AGG | - | chr1_4:42552846-42552865 | Msa0163980:intron | 35.0% |
| TCTATGTACAATCAAGGAAG+TGG | - | chr1_4:42552911-42552930 | Msa0163980:CDS | 35.0% | |
| AGGAGATTGTGAAACTACAA+AGG | - | chr1_4:42552960-42552979 | Msa0163980:CDS | 35.0% | |
| TCACCTTCTGATTCTAATGT+TGG | - | chr1_4:42552998-42553017 | Msa0163980:CDS | 35.0% | |
| CTTTCCTTTCATGATTAGTG+AGG | - | chr1_4:42553045-42553064 | Msa0163980:CDS | 35.0% | |
| ! | GGAAATTTGTGGGAGAATTT+TGG | - | chr1_4:42553070-42553089 | Msa0163980:CDS | 35.0% |
| ! | CTCTCATCAGTTAATGGTTT+TGG | + | chr1_4:42553117-42553136 | None:intergenic | 35.0% |
| GATCGATCTAAATCCATGTT+TGG | - | chr1_4:42553167-42553186 | Msa0163980:CDS | 35.0% | |
| ! | GTTTAGTGATGGAGATAAAG+TGG | - | chr1_4:42553367-42553386 | Msa0163980:five_prime_UTR | 35.0% |
| GGAAAAGTTCACTTGCTTAT+TGG | - | chr1_4:42553388-42553407 | Msa0163980:five_prime_UTR | 35.0% | |
| ACTTGTGTACACACAGACAT+GGG | - | chr1_4:42550270-42550289 | Msa0163980:three_prime_UTR | 40.0% | |
| TGAAGCTAAGGACATTGGTA+TGG | + | chr1_4:42550297-42550316 | None:intergenic | 40.0% | |
| ! | AAGGCTCAAGTTTGAAGCTA+AGG | + | chr1_4:42550309-42550328 | None:intergenic | 40.0% |
| GATGACCACCATAACAATCA+TGG | - | chr1_4:42550468-42550487 | Msa0163980:three_prime_UTR | 40.0% | |
| GATGACCATGATTGTTATGG+TGG | + | chr1_4:42550476-42550495 | None:intergenic | 40.0% | |
| GGTGATGACCATGATTGTTA+TGG | + | chr1_4:42550479-42550498 | None:intergenic | 40.0% | |
| ! | CATATTGTTGTTGCTGCTGT+TGG | + | chr1_4:42550518-42550537 | None:intergenic | 40.0% |
| ! | GATCTAAGACAGCTAGTGAA+TGG | - | chr1_4:42550537-42550556 | Msa0163980:three_prime_UTR | 40.0% |
| TGTCGGTATAGATGGGAAAT+GGG | + | chr1_4:42550574-42550593 | None:intergenic | 40.0% | |
| !!! | TGTTGGTTTTGATGTGTCTG+TGG | + | chr1_4:42550669-42550688 | None:intergenic | 40.0% |
| ! | GTTGTTATTGCTGTTGAAGG+TGG | + | chr1_4:42550774-42550793 | None:intergenic | 40.0% |
| CTAGAGACTTCATCCCATAA+AGG | + | chr1_4:42550960-42550979 | None:intergenic | 40.0% | |
| CTTTATGGGATGAAGTCTCT+AGG | - | chr1_4:42550958-42550977 | Msa0163980:CDS | 40.0% | |
| ! | AATTTGTTTGCTGGGGATTC+GGG | - | chr1_4:42551278-42551297 | Msa0163980:CDS | 40.0% |
| AAAGTGGAAAAACGAGACAG+TGG | + | chr1_4:42551484-42551503 | None:intergenic | 40.0% | |
| ! | AGGGGTACAAAGTTTCAAAG+TGG | + | chr1_4:42551500-42551519 | None:intergenic | 40.0% |
| AGCAAATGCAGACATTGGAA+TGG | + | chr1_4:42551632-42551651 | None:intergenic | 40.0% | |
| ACAACAAAAACGTCAGTGCA+TGG | - | chr1_4:42551782-42551801 | Msa0163980:intron | 40.0% | |
| GAACATGGATATCAAAGGAG+TGG | - | chr1_4:42552101-42552120 | Msa0163980:intron | 40.0% | |
| CAAAAGAAGGTAAAGCAGGA+AGG | - | chr1_4:42552174-42552193 | Msa0163980:intron | 40.0% | |
| !! | TGGTTTCTGGTAGAGAAGTT+TGG | + | chr1_4:42552262-42552281 | None:intergenic | 40.0% |
| CTAAGGCTATGATCATTGTG+AGG | + | chr1_4:42552338-42552357 | None:intergenic | 40.0% | |
| !! | TGATGATGGCAATGATGTGA+AGG | - | chr1_4:42552403-42552422 | Msa0163980:intron | 40.0% |
| ! | GATGATGGCAATGATGTGAA+GGG | - | chr1_4:42552404-42552423 | Msa0163980:intron | 40.0% |
| AAGGGAAAGAAGAAGAGTAG+TGG | - | chr1_4:42552422-42552441 | Msa0163980:intron | 40.0% | |
| ! | AGAGTAGTGGAAGAAGAAGT+TGG | - | chr1_4:42552435-42552454 | Msa0163980:intron | 40.0% |
| TAGTGGAAGAAGAAGTTGGA+AGG | - | chr1_4:42552439-42552458 | Msa0163980:intron | 40.0% | |
| TGCACAAATGAAGAAGCTTG+TGG | - | chr1_4:42552484-42552503 | Msa0163980:intron | 40.0% | |
| TAAGCTTGTGAAGACACTTG+AGG | - | chr1_4:42552529-42552548 | Msa0163980:intron | 40.0% | |
| ! | TTTGGAGTAATGAGAGAGCA+TGG | - | chr1_4:42552630-42552649 | Msa0163980:intron | 40.0% |
| ! | CTAAGGGATGATTCTAAGGA+AGG | - | chr1_4:42552839-42552858 | Msa0163980:intron | 40.0% |
| TTAGTGAGGGTGGAAATTTG+TGG | - | chr1_4:42553059-42553078 | Msa0163980:CDS | 40.0% | |
| TAGTGAGGGTGGAAATTTGT+GGG | - | chr1_4:42553060-42553079 | Msa0163980:CDS | 40.0% | |
| ACTCACTGTCAATCCAAACA+TGG | + | chr1_4:42553183-42553202 | None:intergenic | 40.0% | |
| GTTTGGATTGACAGTGAGTT+CGG | - | chr1_4:42553184-42553203 | Msa0163980:CDS | 40.0% | |
| ! | AGCACACTAAAGAAGCATGA+GGG | + | chr1_4:42553546-42553565 | None:intergenic | 40.0% |
| ! | TGCTTCTTTAGTGTGCTGTT+TGG | - | chr1_4:42553549-42553568 | Msa0163980:five_prime_UTR | 40.0% |
| !! | GCTTCTTTAGTGTGCTGTTT+GGG | - | chr1_4:42553550-42553569 | Msa0163980:five_prime_UTR | 40.0% |
| TAAACATGTACTGTGCATGC+AGG | - | chr1_4:42553573-42553592 | Msa0163980:five_prime_UTR | 40.0% | |
| CACTTGTGTACACACAGACA+TGG | - | chr1_4:42550269-42550288 | Msa0163980:three_prime_UTR | 45.0% | |
| GACAGCTAGTGAATGGAACA+AGG | - | chr1_4:42550544-42550563 | Msa0163980:three_prime_UTR | 45.0% | |
| CTGTCGGTATAGATGGGAAA+TGG | + | chr1_4:42550575-42550594 | None:intergenic | 45.0% | |
| TTTCCCATCTATACCGACAG+CGG | - | chr1_4:42550575-42550594 | Msa0163980:three_prime_UTR | 45.0% | |
| ! | GCTACGGATGAGTTTTTCTC+CGG | - | chr1_4:42550597-42550616 | Msa0163980:three_prime_UTR | 45.0% |
| ! | ATGAGTTTTTCTCCGGTCAC+CGG | - | chr1_4:42550604-42550623 | Msa0163980:three_prime_UTR | 45.0% |
| ! | GAGATGATGATGTTAGGTCG+TGG | - | chr1_4:42550702-42550721 | Msa0163980:exon | 45.0% |
| ! | GTTATTGCTGTTGAAGGTGG+TGG | + | chr1_4:42550771-42550790 | None:intergenic | 45.0% |
| TGAAACACTAGCACTAGCAG+TGG | + | chr1_4:42550808-42550827 | None:intergenic | 45.0% | |
| TCCTGAGACCACAGGATATA+TGG | - | chr1_4:42550830-42550849 | Msa0163980:CDS | 45.0% | |
| CCTGAGACCACAGGATATAT+GGG | - | chr1_4:42550831-42550850 | Msa0163980:CDS | 45.0% | |
| ATCTCCACCCATATATCCTG+TGG | + | chr1_4:42550841-42550860 | None:intergenic | 45.0% | |
| TGAGATGACATGACTGCACT+TGG | - | chr1_4:42551251-42551270 | Msa0163980:CDS | 45.0% | |
| GGCATGATGGTAAGCATTAC+AGG | - | chr1_4:42552195-42552214 | Msa0163980:intron | 45.0% | |
| TGTGAAGACACTTGAGGACA+AGG | - | chr1_4:42552535-42552554 | Msa0163980:intron | 45.0% | |
| GACACTTGAGGACAAGGAAA+AGG | - | chr1_4:42552541-42552560 | Msa0163980:intron | 45.0% | |
| TTGAGGACAAGGAAAAGGAG+AGG | - | chr1_4:42552546-42552565 | Msa0163980:intron | 45.0% | |
| TGAGGACAAGGAAAAGGAGA+GGG | - | chr1_4:42552547-42552566 | Msa0163980:intron | 45.0% | |
| CGTTAAGAGAAGAAGAGTGG+AGG | - | chr1_4:42552570-42552589 | Msa0163980:intron | 45.0% | |
| AGAAGAGTGGAGGAAACAAG+AGG | - | chr1_4:42552580-42552599 | Msa0163980:intron | 45.0% | |
| GAGGAAACAAGAGGCCAAAA+GGG | - | chr1_4:42552589-42552608 | Msa0163980:intron | 45.0% | |
| ! | AGAGAGCATGGATTGAAGCA+AGG | - | chr1_4:42552642-42552661 | Msa0163980:intron | 45.0% |
| ! | GAGAGCATGGATTGAAGCAA+GGG | - | chr1_4:42552643-42552662 | Msa0163980:intron | 45.0% |
| !! | AGCAAGGGATGCTGCTTTAA+TGG | - | chr1_4:42552658-42552677 | Msa0163980:intron | 45.0% |
| GGAAGGAAACAGGAAGAGAA+AGG | - | chr1_4:42552856-42552875 | Msa0163980:CDS | 45.0% | |
| CCACCCTCACTAATCATGAA+AGG | + | chr1_4:42553052-42553071 | None:intergenic | 45.0% | |
| CCTTTCATGATTAGTGAGGG+TGG | - | chr1_4:42553049-42553068 | Msa0163980:CDS | 45.0% | |
| ! | CTAAAGAAGCATGAGGGGAA+AGG | + | chr1_4:42553540-42553559 | None:intergenic | 45.0% |
| ! | GCACACTAAAGAAGCATGAG+GGG | + | chr1_4:42553545-42553564 | None:intergenic | 45.0% |
| ! | CAGCACACTAAAGAAGCATG+AGG | + | chr1_4:42553547-42553566 | None:intergenic | 45.0% |
| ! | GTACTGTGCATGCAGGTTTT+TGG | - | chr1_4:42553580-42553599 | Msa0163980:five_prime_UTR | 45.0% |
| !! | AAATAATTACATAAATAATT+AGG | + | chr1_4:42551019-42551038 | None:intergenic | 5.0% |
| GATCCTGTCGTGCAGGAAAA+AGG | + | chr1_4:42550328-42550347 | None:intergenic | 50.0% | |
| GGAGAGAGTGAAGAAAGCAG+CGG | + | chr1_4:42550359-42550378 | None:intergenic | 50.0% | |
| !! | GTTGGTGATGGTGATGGTGA+GGG | + | chr1_4:42550500-42550519 | None:intergenic | 50.0% |
| !! | TGTTGGTGATGGTGATGGTG+AGG | + | chr1_4:42550501-42550520 | None:intergenic | 50.0% |
| ! | GTTGTTGCTGCTGTTGGTGA+TGG | + | chr1_4:42550512-42550531 | None:intergenic | 50.0% |
| TAGCCGCTGTCGGTATAGAT+GGG | + | chr1_4:42550581-42550600 | None:intergenic | 50.0% | |
| ATCTATACCGACAGCGGCTA+CGG | - | chr1_4:42550581-42550600 | Msa0163980:three_prime_UTR | 50.0% | |
| ! | ATTGCTGTTGAAGGTGGTGG+TGG | + | chr1_4:42550768-42550787 | None:intergenic | 50.0% |
| AACACTAGCACTAGCAGTGG+TGG | + | chr1_4:42550805-42550824 | None:intergenic | 50.0% | |
| GTTTCAACTCCTGAGACCAC+AGG | - | chr1_4:42550822-42550841 | Msa0163980:CDS | 50.0% | |
| CCCATATATCCTGTGGTCTC+AGG | + | chr1_4:42550834-42550853 | None:intergenic | 50.0% | |
| GAGACCACAGGATATATGGG+TGG | - | chr1_4:42550834-42550853 | Msa0163980:CDS | 50.0% | |
| GAGATGCTTCCACTGGAAGA+TGG | - | chr1_4:42550856-42550875 | Msa0163980:CDS | 50.0% | |
| TTGTCTTGGCCATCTTCCAG+TGG | + | chr1_4:42550868-42550887 | None:intergenic | 50.0% | |
| GTGGAAAAACGAGACAGTGG+TGG | + | chr1_4:42551481-42551500 | None:intergenic | 50.0% | |
| ! | GGTAAAGCAGGAAGGCATGA+TGG | - | chr1_4:42552182-42552201 | Msa0163980:intron | 50.0% |
| GATACGTCGTCGTCTGATGA+TGG | - | chr1_4:42552389-42552408 | Msa0163980:intron | 50.0% | |
| GAAGCTTGTGGAGAAGCAAG+AGG | - | chr1_4:42552496-42552515 | Msa0163980:intron | 50.0% | |
| TTGTGGAGAAGCAAGAGGAG+TGG | - | chr1_4:42552501-42552520 | Msa0163980:intron | 50.0% | |
| GGGCGTTAAGAGAAGAAGAG+TGG | - | chr1_4:42552567-42552586 | Msa0163980:intron | 50.0% | |
| GGAGGAAACAAGAGGCCAAA+AGG | - | chr1_4:42552588-42552607 | Msa0163980:intron | 50.0% | |
| GAAACAAGAGGCCAAAAGGG+TGG | - | chr1_4:42552592-42552611 | Msa0163980:intron | 50.0% | |
| ! | AAGAAGCATGAGGGGAAAGG+AGG | + | chr1_4:42553537-42553556 | None:intergenic | 50.0% |
| ! | GAGCCTTTTTCCTGCACGAC+AGG | - | chr1_4:42550322-42550341 | Msa0163980:three_prime_UTR | 55.0% |
| GAAGAAAGCAGCGGCAGAGT+CGG | + | chr1_4:42550350-42550369 | None:intergenic | 55.0% | |
| !! | GCTGCTGTTGGTGATGGTGA+TGG | + | chr1_4:42550506-42550525 | None:intergenic | 55.0% |
| GTAGCCGCTGTCGGTATAGA+TGG | + | chr1_4:42550582-42550601 | None:intergenic | 55.0% | |
| AACTCATCCGTAGCCGCTGT+CGG | + | chr1_4:42550591-42550610 | None:intergenic | 55.0% | |
| AGCTGTCAGATTCCGGTGAC+CGG | + | chr1_4:42550619-42550638 | None:intergenic | 55.0% | |
| ATGGGTGGAGATGCTTCCAC+TGG | - | chr1_4:42550849-42550868 | Msa0163980:CDS | 55.0% | |
| AGAGTCGGATCCTGTCGTGC+AGG | + | chr1_4:42550335-42550354 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 42550197 | 42553634 | 42550197 | ID=Msa0163980;Name=Msa0163980 |
| chr1_4 | mRNA | 42550197 | 42553634 | 42550197 | ID=Msa0163980-mRNA-1;Parent=Msa0163980;Name=Msa0163980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=268|1|1|1|1|1|2|508|517 |
| chr1_4 | exon | 42550197 | 42551743 | 42550197 | ID=Msa0163980-mRNA-1:exon:12315;Parent=Msa0163980-mRNA-1 |
| chr1_4 | exon | 42552852 | 42553634 | 42552852 | ID=Msa0163980-mRNA-1:exon:12314;Parent=Msa0163980-mRNA-1 |
| chr1_4 | five_prime_UTR | 42553367 | 42553634 | 42553367 | ID=Msa0163980-mRNA-1:five_prime_utr;Parent=Msa0163980-mRNA-1 |
| chr1_4 | CDS | 42552852 | 42553366 | 42552852 | ID=Msa0163980-mRNA-1:cds;Parent=Msa0163980-mRNA-1 |
| chr1_4 | CDS | 42550705 | 42551743 | 42550705 | ID=Msa0163980-mRNA-1:cds;Parent=Msa0163980-mRNA-1 |
| chr1_4 | three_prime_UTR | 42550197 | 42550704 | 42550197 | ID=Msa0163980-mRNA-1:three_prime_utr;Parent=Msa0163980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
