Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214210 | AES66525.2 | 98.214 | 336 | 6 | 0 | 1 | 336 | 1 | 336 | 0.0 | 690 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214210 | sp|Q9ZV88|BEH4_ARATH | 67.365 | 334 | 82 | 8 | 1 | 316 | 1 | 325 | 1.13e-123 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214210 | G7IR04 | 98.214 | 336 | 6 | 0 | 1 | 336 | 1 | 336 | 0.0 | 690 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0214210 | TF | BES1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069350 | Msa0214210 | 0.812512 | 4.084980e-51 | -8.615850e-47 |
| Msa0134930 | Msa0214210 | 0.801985 | 6.951841e-49 | -8.615850e-47 |
| Msa0191570 | Msa0214210 | 0.821808 | 3.316292e-53 | -8.615850e-47 |
| Msa0214210 | Msa0221180 | 0.815941 | 7.140608e-52 | -8.615850e-47 |
| Msa0214210 | Msa0233570 | 0.816687 | 4.864685e-52 | -8.615850e-47 |
| Msa0214210 | Msa0249870 | 0.800994 | 1.109690e-48 | -8.615850e-47 |
| Msa0214210 | Msa0254540 | 0.858725 | 6.765559e-63 | -8.615850e-47 |
| Msa0214210 | Msa0262750 | 0.806872 | 6.661987e-50 | -8.615850e-47 |
| Msa0214210 | Msa0274650 | 0.800196 | 1.614653e-48 | -8.615850e-47 |
| Msa0214210 | Msa0281540 | 0.801574 | 8.445630e-49 | -8.615850e-47 |
| Msa0214210 | Msa0293840 | 0.859688 | 3.478538e-63 | -8.615850e-47 |
| Msa0214210 | Msa0312250 | 0.822461 | 2.339842e-53 | -8.615850e-47 |
| Msa0214210 | Msa0320580 | 0.810226 | 1.280743e-50 | -8.615850e-47 |
| Msa0214210 | Msa0332280 | 0.859530 | 3.881851e-63 | -8.615850e-47 |
| Msa0214210 | Msa0344110 | 0.811720 | 6.080361e-51 | -8.615850e-47 |
| Msa0214210 | Msa0420430 | 0.818515 | 1.883373e-52 | -8.615850e-47 |
| Msa0214210 | Msa0541740 | 0.815874 | 7.390338e-52 | -8.615850e-47 |
| Msa0214210 | Msa0557850 | 0.872353 | 3.394132e-67 | -8.615850e-47 |
| Msa0214210 | Msa0562360 | 0.800506 | 1.395855e-48 | -8.615850e-47 |
| Msa0214210 | Msa0576330 | 0.815143 | 1.074935e-51 | -8.615850e-47 |
| Msa0214210 | Msa0612520 | 0.863423 | 2.515317e-64 | -8.615850e-47 |
| Msa0214210 | Msa0616230 | 0.813324 | 2.712036e-51 | -8.615850e-47 |
| Msa0214210 | Msa0653160 | 0.873995 | 9.537355e-68 | -8.615850e-47 |
| Msa0214210 | Msa0655710 | 0.816701 | 4.828731e-52 | -8.615850e-47 |
| Msa0214210 | Msa0660090 | 0.821660 | 3.587492e-53 | -8.615850e-47 |
| Msa0214210 | Msa0688620 | 0.819001 | 1.460288e-52 | -8.615850e-47 |
| Msa0214210 | Msa0695560 | 0.849181 | 3.812925e-60 | -8.615850e-47 |
| Msa0214210 | Msa0699560 | 0.810542 | 1.094365e-50 | -8.615850e-47 |
| Msa0214210 | Msa0701250 | 0.815772 | 7.790962e-52 | -8.615850e-47 |
| Msa0214210 | Msa0749190 | 0.821719 | 3.476358e-53 | -8.615850e-47 |
| Msa0214210 | Msa0750520 | 0.820742 | 5.839061e-53 | -8.615850e-47 |
| Msa0214210 | Msa0876630 | 0.801367 | 9.308544e-49 | -8.615850e-47 |
| Msa0214210 | Msa0978980 | 0.818452 | 1.946154e-52 | -8.615850e-47 |
| Msa0214210 | Msa1033420 | 0.853114 | 2.960296e-61 | -8.615850e-47 |
| Msa0214210 | Msa1046120 | 0.826797 | 2.227257e-54 | -8.615850e-47 |
| Msa0214210 | Msa1071410 | 0.820518 | 6.574446e-53 | -8.615850e-47 |
| Msa0214210 | Msa1073060 | 0.854615 | 1.093725e-61 | -8.615850e-47 |
| Msa0214210 | Msa1079640 | 0.806784 | 6.952154e-50 | -8.615850e-47 |
| Msa0214210 | Msa1085680 | 0.810146 | 1.332523e-50 | -8.615850e-47 |
| Msa0214210 | Msa1091050 | 0.835099 | 2.043121e-56 | -8.615850e-47 |
| Msa0214210 | Msa1130780 | 0.833284 | 5.824741e-56 | -8.615850e-47 |
| Msa0214210 | Msa1133970 | 0.835116 | 2.023780e-56 | -8.615850e-47 |
| Msa0214210 | Msa1134040 | 0.834834 | 2.382963e-56 | -8.615850e-47 |
| Msa0214210 | Msa1144990 | 0.800851 | 1.187009e-48 | -8.615850e-47 |
| Msa0214210 | Msa1160780 | 0.832260 | 1.046463e-55 | -8.615850e-47 |
| Msa0214210 | Msa1212920 | 0.816012 | 6.884091e-52 | -8.615850e-47 |
| Msa0214210 | Msa1267930 | 0.816623 | 5.026580e-52 | -8.615850e-47 |
| Msa0214210 | Msa1299980 | 0.829409 | 5.231701e-55 | -8.615850e-47 |
| Msa0214210 | Msa1331650 | 0.829322 | 5.492273e-55 | -8.615850e-47 |
| Msa0214210 | Msa1341750 | 0.830011 | 3.734197e-55 | -8.615850e-47 |
| Msa0214210 | Msa1381800 | 0.826295 | 2.933945e-54 | -8.615850e-47 |
| Msa0214210 | Msa1417930 | 0.840411 | 8.838175e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214210 | MtrunA17_Chr2g0315201 | 98.734 | 316 | 4 | 0 | 1 | 316 | 1 | 316 | 0.0 | 637 |
| Msa0214210 | MtrunA17_Chr2g0315211 | 73.684 | 323 | 78 | 1 | 1 | 316 | 1 | 323 | 1.36e-151 | 429 |
| Msa0214210 | MtrunA17_Chr1g0154651 | 37.143 | 315 | 114 | 11 | 6 | 316 | 14 | 248 | 4.27e-38 | 136 |
| Msa0214210 | MtrunA17_Chr3g0141401 | 40.597 | 335 | 142 | 11 | 3 | 314 | 12 | 312 | 7.51e-35 | 129 |
| Msa0214210 | MtrunA17_Chr5g0403631 | 41.329 | 346 | 140 | 11 | 3 | 314 | 6 | 322 | 8.16e-32 | 121 |
| Msa0214210 | MtrunA17_Chr5g0408851 | 54.118 | 85 | 33 | 3 | 17 | 101 | 61 | 139 | 1.48e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0214210 | AT1G78700.1 | 67.365 | 334 | 82 | 8 | 1 | 316 | 1 | 325 | 1.15e-124 | 361 |
| Msa0214210 | AT4G18890.1 | 61.180 | 322 | 81 | 8 | 1 | 316 | 1 | 284 | 6.27e-101 | 299 |
| Msa0214210 | AT4G18890.2 | 51.626 | 246 | 75 | 8 | 77 | 316 | 1 | 208 | 2.22e-60 | 192 |
| Msa0214210 | AT1G19350.3 | 42.090 | 354 | 117 | 14 | 6 | 314 | 44 | 354 | 3.99e-47 | 163 |
| Msa0214210 | AT1G19350.5 | 41.737 | 357 | 120 | 14 | 6 | 317 | 22 | 335 | 5.86e-47 | 162 |
| Msa0214210 | AT1G19350.1 | 41.737 | 357 | 120 | 14 | 6 | 317 | 22 | 335 | 5.86e-47 | 162 |
| Msa0214210 | AT1G19350.6 | 41.737 | 357 | 120 | 14 | 6 | 317 | 22 | 335 | 5.86e-47 | 162 |
| Msa0214210 | AT1G19350.4 | 41.737 | 357 | 120 | 14 | 6 | 317 | 22 | 335 | 5.86e-47 | 162 |
| Msa0214210 | AT1G75080.2 | 39.045 | 356 | 129 | 13 | 6 | 316 | 23 | 335 | 1.95e-43 | 153 |
| Msa0214210 | AT1G75080.1 | 39.045 | 356 | 129 | 13 | 6 | 316 | 23 | 335 | 1.95e-43 | 153 |
| Msa0214210 | AT3G50750.1 | 45.882 | 255 | 76 | 9 | 6 | 229 | 14 | 237 | 9.91e-38 | 136 |
| Msa0214210 | AT4G36780.1 | 55.491 | 173 | 57 | 4 | 6 | 166 | 16 | 180 | 9.76e-30 | 115 |
| Msa0214210 | AT5G45300.2 | 58.333 | 60 | 25 | 0 | 17 | 76 | 97 | 156 | 8.19e-16 | 79.0 |
| Msa0214210 | AT5G45300.1 | 58.333 | 60 | 25 | 0 | 17 | 76 | 97 | 156 | 8.28e-16 | 79.0 |
| Msa0214210 | AT5G45300.3 | 58.333 | 60 | 25 | 0 | 17 | 76 | 111 | 170 | 9.08e-16 | 79.0 |
| Msa0214210 | AT2G45880.1 | 52.174 | 69 | 30 | 1 | 11 | 76 | 74 | 142 | 4.97e-14 | 73.6 |
Find 129 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGTGTAGTTAGTATATT+TGG | 0.217831 | 2_1:+58650746 | None:intergenic |
| AGTATATTTGGAAATGGATT+TGG | 0.293195 | 2_1:+58650758 | None:intergenic |
| TCGAAGCCCGTTTGCCTTCA+AGG | 0.313190 | 2_1:-58647752 | Msa0214210:CDS |
| TTGATCCCAGCAAACCATTC+AGG | 0.319016 | 2_1:+58647820 | None:intergenic |
| TACTCCTTCCTGCCTTCTTC+CGG | 0.325671 | 2_1:-58647874 | Msa0214210:CDS |
| AAGGAAGACGAGCCGGGGCT+TGG | 0.330367 | 2_1:+58648147 | None:intergenic |
| CATTTGGAAGCAACACATTT+GGG | 0.336623 | 2_1:-58647597 | Msa0214210:CDS |
| CTCTCCACAGCTTCATCTTC+AGG | 0.340264 | 2_1:-58648048 | Msa0214210:CDS |
| ATGGAGCCACTATGAAAATA+AGG | 0.355143 | 2_1:+58648003 | None:intergenic |
| TCATTGTTATCACAATGTTT+AGG | 0.355738 | 2_1:+58650507 | None:intergenic |
| GCATTTGGAAGCAACACATT+TGG | 0.360050 | 2_1:-58647598 | Msa0214210:CDS |
| TTCTCTGGTTTGAGAATGTA+TGG | 0.363109 | 2_1:-58650543 | Msa0214210:CDS |
| ATGTGGACCCCTGGACAGTC+AGG | 0.369643 | 2_1:-58647700 | Msa0214210:CDS |
| GCCTTTAGAGAACATGGATA+TGG | 0.373174 | 2_1:-58648211 | Msa0214210:CDS |
| ATCTCAGATGAATTTGCATT+TGG | 0.385434 | 2_1:-58647613 | Msa0214210:CDS |
| CTTGGGAAGGAAGACGAGCC+GGG | 0.389874 | 2_1:+58648141 | None:intergenic |
| TCTGCACGGCCCGGGTGGAC+TGG | 0.392696 | 2_1:-58647904 | Msa0214210:CDS |
| GTTGATCCTGAATGGTTTGC+TGG | 0.393927 | 2_1:-58647826 | Msa0214210:CDS |
| GTAGTTAGTATATTTGGAAA+TGG | 0.397691 | 2_1:+58650752 | None:intergenic |
| ACTATCTGACGGCCAGGGCT+TGG | 0.399313 | 2_1:+58647847 | None:intergenic |
| GAGCTCAGGGGAGGTGTGAC+AGG | 0.403615 | 2_1:+58647973 | None:intergenic |
| CATCTGCTACAAATTCTTCA+TGG | 0.405598 | 2_1:+58647545 | None:intergenic |
| AAATAAGGATGAGGAAGTTT+CGG | 0.409483 | 2_1:+58648018 | None:intergenic |
| CATTTGGGATTGTGAAGCCT+TGG | 0.410546 | 2_1:-58647582 | Msa0214210:CDS |
| AGAAAAGAATTGAACTTTGA+AGG | 0.412503 | 2_1:+58650691 | None:intergenic |
| CCGTTTGCCTTCAAGGAAGA+TGG | 0.417625 | 2_1:-58647745 | Msa0214210:CDS |
| TCAAAGCCTGCTGGAATAGC+TGG | 0.418647 | 2_1:+58647667 | None:intergenic |
| GAACTTTGAAGGAGAGAAAG+AGG | 0.424311 | 2_1:+58650702 | None:intergenic |
| TCAAAAGGGTGTTCACGAAA+TGG | 0.427164 | 2_1:+58650668 | None:intergenic |
| ACGGCCAGGGCTTGGAGGAC+CGG | 0.427775 | 2_1:+58647855 | None:intergenic |
| AAATGTTACCTTACGATAAG+TGG | 0.428703 | 2_1:+58650431 | None:intergenic |
| CATCTTCCTTGAAGGCAAAC+GGG | 0.432171 | 2_1:+58647746 | None:intergenic |
| GAACATGCCCCTGACTGTCC+AGG | 0.438349 | 2_1:+58647691 | None:intergenic |
| TTCTAGCAGTCGGAGAGCTC+AGG | 0.440476 | 2_1:+58647959 | None:intergenic |
| CCATCTTCCTTGAAGGCAAA+CGG | 0.441836 | 2_1:+58647745 | None:intergenic |
| CATTGAGAGTAACTCTCAAA+AGG | 0.443094 | 2_1:+58650653 | None:intergenic |
| TTTGGAAATGGATTTGGAGG+TGG | 0.455823 | 2_1:+58650764 | None:intergenic |
| TCTGAGATGGCTTCAGACAT+TGG | 0.466820 | 2_1:+58647628 | None:intergenic |
| AGATTGAATGTCGGAGAAGT+TGG | 0.467632 | 2_1:+58647781 | None:intergenic |
| ACTTGTGTTGCAAACCTCCT+AGG | 0.467919 | 2_1:-58647229 | Msa0214210:CDS |
| AAAGCTCTTTGTAATGAAGC+TGG | 0.472686 | 2_1:-58650477 | Msa0214210:CDS |
| TTACGATAAGTGGTTCCATC+AGG | 0.476237 | 2_1:+58650441 | None:intergenic |
| GGGCTTGGAGGACCGGAAGA+AGG | 0.476639 | 2_1:+58647862 | None:intergenic |
| TGGATCCTTTCTCCTTCCCA+AGG | 0.477640 | 2_1:+58647565 | None:intergenic |
| CAGGCAGCGGTTCGCGCATG+TGG | 0.479649 | 2_1:-58647717 | Msa0214210:CDS |
| AGGTGGAGGGTGATCTTTGT+CGG | 0.480030 | 2_1:+58650781 | None:intergenic |
| GCGTTACGATTTGCAGCGTA+AGG | 0.480138 | 2_1:+58648105 | None:intergenic |
| ATGATCAATCTGCACGGCCC+GGG | 0.481435 | 2_1:-58647912 | Msa0214210:CDS |
| ATCTGACGGCCAGGGCTTGG+AGG | 0.481702 | 2_1:+58647850 | None:intergenic |
| GGAAATGGATTTGGAGGTGG+AGG | 0.484848 | 2_1:+58650767 | None:intergenic |
| GTCAGATAGTTGATCCTGAA+TGG | 0.488622 | 2_1:-58647834 | Msa0214210:CDS |
| ATATTTGGAAATGGATTTGG+AGG | 0.490012 | 2_1:+58650761 | None:intergenic |
| TGTAATGAAAATAAAGGAAA+GGG | 0.490496 | 2_1:+58650832 | None:intergenic |
| ATTTGGGATTGTGAAGCCTT+GGG | 0.491602 | 2_1:-58647581 | Msa0214210:CDS |
| AGGAGAGAAAGAGGGAGGTG+TGG | 0.492949 | 2_1:+58650711 | None:intergenic |
| ACTTGGGAAGGAAGACGAGC+CGG | 0.496049 | 2_1:+58648140 | None:intergenic |
| TCTTCCGGTCCTCCAAGCCC+TGG | 0.498896 | 2_1:-58647859 | Msa0214210:CDS |
| TTCTCTCTCTCCTTCCATGT+TGG | 0.499958 | 2_1:+58650612 | None:intergenic |
| AGGTGTGGAAGTAGAAGAAG+TGG | 0.501319 | 2_1:+58650726 | None:intergenic |
| AAATGCAAATTCATCTGAGA+TGG | 0.501657 | 2_1:+58647615 | None:intergenic |
| GATGATCAATCTGCACGGCC+CGG | 0.503778 | 2_1:-58647913 | Msa0214210:CDS |
| TAAGGGGATGAAGATGGACT+TGG | 0.504786 | 2_1:+58648123 | None:intergenic |
| TTGGAGGACCGGAAGAAGGC+AGG | 0.505728 | 2_1:+58647866 | None:intergenic |
| CTCTTTGTAATGAAGCTGGT+TGG | 0.506195 | 2_1:-58650473 | Msa0214210:CDS |
| TGAAGCCTTGGGAAGGAGAA+AGG | 0.506728 | 2_1:-58647570 | Msa0214210:CDS |
| TGTTCTCCAGCTATTCCAGC+AGG | 0.507117 | 2_1:-58647673 | Msa0214210:CDS |
| AAAGTGTGTAATGAAAATAA+AGG | 0.508090 | 2_1:+58650826 | None:intergenic |
| GGATCAACTATCTGACGGCC+AGG | 0.508622 | 2_1:+58647841 | None:intergenic |
| GAGTTACTCTCAATGACATC+TGG | 0.509973 | 2_1:-58650645 | Msa0214210:exon |
| ATGGTAATTCCCTCATTCCA+TGG | 0.516736 | 2_1:-58648080 | Msa0214210:CDS |
| AGGTGTGACAGGAGCACTGA+TGG | 0.518748 | 2_1:+58647984 | None:intergenic |
| ACCATATCCATGTTCTCTAA+AGG | 0.525017 | 2_1:+58648210 | None:intergenic |
| GCAGTTTGATCAAAGCCTGC+TGG | 0.525201 | 2_1:+58647658 | None:intergenic |
| AACTTTGAAGGAGAGAAAGA+GGG | 0.529635 | 2_1:+58650703 | None:intergenic |
| GAGAACATGGATATGGTTGG+TGG | 0.530636 | 2_1:-58648204 | Msa0214210:CDS |
| CGTTACGATTTGCAGCGTAA+GGG | 0.534170 | 2_1:+58648106 | None:intergenic |
| AAGACGAGCCGGGGCTTGGA+TGG | 0.534291 | 2_1:+58648151 | None:intergenic |
| GTTACGATTTGCAGCGTAAG+GGG | 0.536907 | 2_1:+58648107 | None:intergenic |
| GCTGCAAATCGTAACGCTGA+TGG | 0.540162 | 2_1:-58648099 | Msa0214210:CDS |
| ATTGAGAGTAACTCTCAAAA+GGG | 0.547709 | 2_1:+58650654 | None:intergenic |
| TTGGGAAGGAAGACGAGCCG+GGG | 0.553399 | 2_1:+58648142 | None:intergenic |
| TCTAGCAGTCGGAGAGCTCA+GGG | 0.554727 | 2_1:+58647960 | None:intergenic |
| AACATGCCCCTGACTGTCCA+GGG | 0.556233 | 2_1:+58647692 | None:intergenic |
| CCACTATGAAAATAAGGATG+AGG | 0.557357 | 2_1:+58648009 | None:intergenic |
| GTAATGTTGTCCAGTCCACC+CGG | 0.557358 | 2_1:+58647894 | None:intergenic |
| GTGTAATGAAAATAAAGGAA+AGG | 0.558624 | 2_1:+58650831 | None:intergenic |
| GGTTCGCGCATGTGGACCCC+TGG | 0.559214 | 2_1:-58647709 | Msa0214210:CDS |
| GGATGAAGATGGACTTGGGA+AGG | 0.561521 | 2_1:+58648128 | None:intergenic |
| TCATCTTACCATCCAAGCCC+CGG | 0.562153 | 2_1:-58648159 | Msa0214210:CDS |
| GCAGCGTAAGGGGATGAAGA+TGG | 0.565277 | 2_1:+58648117 | None:intergenic |
| GGTTGGACTGTTGAACCTGA+TGG | 0.566068 | 2_1:-58650456 | Msa0214210:CDS |
| ATCACTTGCAGTGGACTCCT+AGG | 0.567711 | 2_1:+58647212 | None:intergenic |
| ATCAATCTGCACGGCCCGGG+TGG | 0.570226 | 2_1:-58647909 | Msa0214210:CDS |
| TTGATCCTGAATGGTTTGCT+GGG | 0.572973 | 2_1:-58647825 | Msa0214210:CDS |
| GGTGTGGAAGTAGAAGAAGT+GGG | 0.575717 | 2_1:+58650727 | None:intergenic |
| TTTGAAGGAGAGAAAGAGGG+AGG | 0.577067 | 2_1:+58650706 | None:intergenic |
| TGTGGACCCCTGGACAGTCA+GGG | 0.577345 | 2_1:-58647699 | Msa0214210:CDS |
| ATGCAAGCCTTTAGAGAACA+TGG | 0.577571 | 2_1:-58648217 | Msa0214210:CDS |
| GGGATTGTGAAGCCTTGGGA+AGG | 0.580106 | 2_1:-58647577 | Msa0214210:CDS |
| GAAATGGATTTGGAGGTGGA+GGG | 0.584278 | 2_1:+58650768 | None:intergenic |
| AGGAGTCCACTGCAAGTGAT+CGG | 0.590371 | 2_1:-58647209 | Msa0214210:CDS |
| TTAGAGAACATGGATATGGT+TGG | 0.590409 | 2_1:-58648207 | Msa0214210:CDS |
| AGGACCGGAAGAAGGCAGGA+AGG | 0.591677 | 2_1:+58647870 | None:intergenic |
| TGATGGAACCACTTATCGTA+AGG | 0.595024 | 2_1:-58650439 | Msa0214210:intron |
| GTGTGGAAGTAGAAGAAGTG+GGG | 0.600322 | 2_1:+58650728 | None:intergenic |
| CTGGTACAAGACTACCAACA+TGG | 0.603713 | 2_1:-58650626 | Msa0214210:CDS |
| AGGAGAGAGAGAACAACAAG+AGG | 0.604704 | 2_1:-58650602 | Msa0214210:CDS |
| GTGGACCCCTGGACAGTCAG+GGG | 0.607774 | 2_1:-58647698 | Msa0214210:CDS |
| CGAGATACAAGATTGAATGT+CGG | 0.609297 | 2_1:+58647772 | None:intergenic |
| CTTGGATGGTAAGATGAACA+AGG | 0.613106 | 2_1:+58648165 | None:intergenic |
| GATCAACTATCTGACGGCCA+GGG | 0.614613 | 2_1:+58647842 | None:intergenic |
| ACTTGCAGTGGACTCCTAGG+AGG | 0.617744 | 2_1:+58647215 | None:intergenic |
| AATCGCGGTGTTCTAGCAGT+CGG | 0.621032 | 2_1:+58647949 | None:intergenic |
| CACTTGGTAACTCAAAGACC+AGG | 0.624367 | 2_1:-58647510 | Msa0214210:intron |
| TACGTACCGATCACTTGCAG+TGG | 0.628834 | 2_1:+58647203 | None:intergenic |
| GATGATCTTGAACTCACACT+TGG | 0.629133 | 2_1:-58647526 | Msa0214210:CDS |
| AAGGGGATGAAGATGGACTT+GGG | 0.629431 | 2_1:+58648124 | None:intergenic |
| CTGAAGATGAAGCTGTGGAG+AGG | 0.631008 | 2_1:+58648049 | None:intergenic |
| TACAAGACTACCAACATGGA+AGG | 0.634618 | 2_1:-58650622 | Msa0214210:CDS |
| GCAGTCGGAGAGCTCAGGGG+AGG | 0.643740 | 2_1:+58647964 | None:intergenic |
| TGATCCTGAAGATGAAGCTG+TGG | 0.648099 | 2_1:+58648044 | None:intergenic |
| GGAGAAGTTGGACTAGCATG+TGG | 0.648324 | 2_1:+58647793 | None:intergenic |
| TAATGTTGTCCAGTCCACCC+GGG | 0.661081 | 2_1:+58647895 | None:intergenic |
| ACATGCCCCTGACTGTCCAG+GGG | 0.666992 | 2_1:+58647693 | None:intergenic |
| CTAGCAGTCGGAGAGCTCAG+GGG | 0.684940 | 2_1:+58647961 | None:intergenic |
| ATTCAGGATCAACTATCTGA+CGG | 0.695991 | 2_1:+58647836 | None:intergenic |
| TTGGATGGTAAGATGAACAA+GGG | 0.701552 | 2_1:+58648166 | None:intergenic |
| ACTTCGATGATCAATCTGCA+CGG | 0.712290 | 2_1:-58647918 | Msa0214210:CDS |
| TCGAAGTCAGCATTCAATCG+CGG | 0.720698 | 2_1:+58647934 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAACATGATTTTAAATAA+AGG | + | chr2_1:58648327-58648346 | None:intergenic | 10.0% |
| !!! | ATTTTGAAAACAAATTTAAA+TGG | - | chr2_1:58648419-58648438 | Msa0214210:intron | 10.0% |
| !! | AATATTAGAAAATCATAAAT+TGG | - | chr2_1:58648495-58648514 | Msa0214210:intron | 10.0% |
| !! | AATTAGAAAATAAAAAGTAA+TGG | + | chr2_1:58648725-58648744 | None:intergenic | 10.0% |
| !! | TGTATTATTACATTACATTA+TGG | - | chr2_1:58647641-58647660 | Msa0214210:CDS | 15.0% |
| !! | GATATTATAATATGATTTGA+TGG | - | chr2_1:58647770-58647789 | Msa0214210:CDS | 15.0% |
| !! | AAATATCTGGATAAATATTT+AGG | + | chr2_1:58647823-58647842 | None:intergenic | 15.0% |
| !! | GATATTATAATATCATTTGA+CGG | - | chr2_1:58647863-58647882 | Msa0214210:CDS | 15.0% |
| !! | ATTCGATTAAAAAAAAACAT+TGG | + | chr2_1:58649086-58649105 | None:intergenic | 15.0% |
| !!! | TTTCAATTAGTTTTTTAGTT+AGG | - | chr2_1:58649716-58649735 | Msa0214210:intron | 15.0% |
| !! | TGTAATGAAAATAAAGGAAA+GGG | + | chr2_1:58647217-58647236 | None:intergenic | 20.0% |
| !! | AAAGTGTGTAATGAAAATAA+AGG | + | chr2_1:58647223-58647242 | None:intergenic | 20.0% |
| !! | CTGATATTGTTACAATTAAA+TGG | - | chr2_1:58648017-58648036 | Msa0214210:CDS | 20.0% |
| !! | AAACTTTAATAAAATCACAC+CGG | + | chr2_1:58648163-58648182 | None:intergenic | 20.0% |
| !!! | ATAAAAAAACTATGATGATG+TGG | - | chr2_1:58648282-58648301 | Msa0214210:intron | 20.0% |
| !! | GAGATAAAAAGTAATAACAT+TGG | + | chr2_1:58649115-58649134 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCAGAAAAAACTT+AGG | + | chr2_1:58649199-58649218 | None:intergenic | 20.0% |
| !! | CTCTAAATATGATAATTAGA+TGG | + | chr2_1:58649656-58649675 | None:intergenic | 20.0% |
| !!! | ATTTTGTGTTTTTTTCACAA+GGG | + | chr2_1:58649696-58649715 | None:intergenic | 20.0% |
| !!! | AATTTTGTGTTTTTTTCACA+AGG | + | chr2_1:58649697-58649716 | None:intergenic | 20.0% |
| !! | ATTATCATTATCATCATTGT+AGG | - | chr2_1:58650564-58650583 | Msa0214210:CDS | 20.0% |
| ! | GTGTAATGAAAATAAAGGAA+AGG | + | chr2_1:58647218-58647237 | None:intergenic | 25.0% |
| !! | AGTATATTTGGAAATGGATT+TGG | + | chr2_1:58647291-58647310 | None:intergenic | 25.0% |
| ! | GTAGTTAGTATATTTGGAAA+TGG | + | chr2_1:58647297-58647316 | None:intergenic | 25.0% |
| ! | AGAAAAGAATTGAACTTTGA+AGG | + | chr2_1:58647358-58647377 | None:intergenic | 25.0% |
| ! | TCATTGTTATCACAATGTTT+AGG | + | chr2_1:58647542-58647561 | None:intergenic | 25.0% |
| ! | TATCTGGATAAATATTTAGG+TGG | + | chr2_1:58647820-58647839 | None:intergenic | 25.0% |
| !! | AGGTTAGTTGAAAAAATATC+TGG | + | chr2_1:58647836-58647855 | None:intergenic | 25.0% |
| ! | GTAAAAAAAATTTACACCGA+CGG | - | chr2_1:58647894-58647913 | Msa0214210:CDS | 25.0% |
| !!! | GAAACCATCAATGTTTTAAA+AGG | - | chr2_1:58647960-58647979 | Msa0214210:CDS | 25.0% |
| ! | AAACCAAAGAAGGTAAAATT+GGG | + | chr2_1:58648354-58648373 | None:intergenic | 25.0% |
| ! | TAAACCAAAGAAGGTAAAAT+TGG | + | chr2_1:58648355-58648374 | None:intergenic | 25.0% |
| ! | ACTTGAAATTAAACCAAAGA+AGG | + | chr2_1:58648364-58648383 | None:intergenic | 25.0% |
| ! | TTTACTTCATTCATAGCTAA+AGG | + | chr2_1:58648387-58648406 | None:intergenic | 25.0% |
| ! | GCTATGAATGAAGTAAAAAT+TGG | - | chr2_1:58648390-58648409 | Msa0214210:intron | 25.0% |
| ! | ATGAATGAAGTAAAAATTGG+AGG | - | chr2_1:58648393-58648412 | Msa0214210:intron | 25.0% |
| !! | TTGATTTTGCATTTTCGAAT+TGG | - | chr2_1:58648591-58648610 | Msa0214210:intron | 25.0% |
| !! | TGATTTTGCATTTTCGAATT+GGG | - | chr2_1:58648592-58648611 | Msa0214210:intron | 25.0% |
| ! | AAAGAAAGTGATAGAAAATC+TGG | + | chr2_1:58648681-58648700 | None:intergenic | 25.0% |
| ! | ATAAAAAGTAATGGTTTCTC+AGG | + | chr2_1:58648716-58648735 | None:intergenic | 25.0% |
| ! | TGACTTTATTAGACAGAAAA+AGG | + | chr2_1:58648778-58648797 | None:intergenic | 25.0% |
| ! | TAATAAAGTCATATTGAACC+TGG | - | chr2_1:58648787-58648806 | Msa0214210:intron | 25.0% |
| ! | AAACATATATGTACCAACTA+TGG | + | chr2_1:58648861-58648880 | None:intergenic | 25.0% |
| !! | ATAGTTGGTACATATATGTT+TGG | - | chr2_1:58648860-58648879 | Msa0214210:intron | 25.0% |
| !! | CTTTATGAAATTTTCAGAGT+TGG | - | chr2_1:58648909-58648928 | Msa0214210:intron | 25.0% |
| ! | TATCTCTTGTTAAATTACCA+TGG | - | chr2_1:58649129-58649148 | Msa0214210:intron | 25.0% |
| ! | CCACATAAAACTTAGATATA+AGG | + | chr2_1:58649155-58649174 | None:intergenic | 25.0% |
| !!! | CCTTATATCTAAGTTTTATG+TGG | - | chr2_1:58649152-58649171 | Msa0214210:intron | 25.0% |
| ! | TTTATGTGGTTAAGTTAAGA+TGG | - | chr2_1:58649166-58649185 | Msa0214210:intron | 25.0% |
| ! | TAGTAGATTATACCAGAATT+TGG | + | chr2_1:58649228-58649247 | None:intergenic | 25.0% |
| !! | TTTTTGATATTGCGAATTTG+AGG | - | chr2_1:58649363-58649382 | Msa0214210:intron | 25.0% |
| ! | TTTGACTAATTATGCTACAT+AGG | - | chr2_1:58649528-58649547 | Msa0214210:intron | 25.0% |
| ! | AAAATAATTGAACACAAGCA+GGG | - | chr2_1:58649806-58649825 | Msa0214210:intron | 25.0% |
| !! | TGATAATGATAATAAGTACC+TGG | + | chr2_1:58650557-58650576 | None:intergenic | 25.0% |
| ! | ATATTTGGAAATGGATTTGG+AGG | + | chr2_1:58647288-58647307 | None:intergenic | 30.0% |
| ATTGAGAGTAACTCTCAAAA+GGG | + | chr2_1:58647395-58647414 | None:intergenic | 30.0% | |
| AAATGTTACCTTACGATAAG+TGG | + | chr2_1:58647618-58647637 | None:intergenic | 30.0% | |
| !!! | ACCATCAATGTTTTAAAAGG+TGG | - | chr2_1:58647963-58647982 | Msa0214210:CDS | 30.0% |
| !!! | CCATCAATGTTTTAAAAGGT+GGG | - | chr2_1:58647964-58647983 | Msa0214210:CDS | 30.0% |
| ! | ATGCAACAATTGTGCATTTT+TGG | - | chr2_1:58648104-58648123 | Msa0214210:CDS | 30.0% |
| ATCATAATCGCTATACTACT+AGG | - | chr2_1:58648198-58648217 | Msa0214210:CDS | 30.0% | |
| ! | ATTCCCAATTTTACCTTCTT+TGG | - | chr2_1:58648348-58648367 | Msa0214210:intron | 30.0% |
| TTAAACCAGAGAGACATAAA+TGG | - | chr2_1:58648470-58648489 | Msa0214210:intron | 30.0% | |
| GAACCTGGTAATTTAGAAAA+TGG | - | chr2_1:58648802-58648821 | Msa0214210:intron | 30.0% | |
| ! | TCTCCATTTTCTAAATTACC+AGG | + | chr2_1:58648808-58648827 | None:intergenic | 30.0% |
| TGGTAATTTAGAAAATGGAG+AGG | - | chr2_1:58648807-58648826 | Msa0214210:intron | 30.0% | |
| GGTAATTTAGAAAATGGAGA+GGG | - | chr2_1:58648808-58648827 | Msa0214210:intron | 30.0% | |
| TATATGTACCAACTATGGAA+TGG | + | chr2_1:58648856-58648875 | None:intergenic | 30.0% | |
| ! | TATGAAATTTTCAGAGTTGG+TGG | - | chr2_1:58648912-58648931 | Msa0214210:intron | 30.0% |
| ! | ATACATAATGGAATCCTATG+TGG | + | chr2_1:58648938-58648957 | None:intergenic | 30.0% |
| TTCATTTCATTCCAAATGAG+AGG | - | chr2_1:58649028-58649047 | Msa0214210:intron | 30.0% | |
| TCATTTCATTCCAAATGAGA+GGG | - | chr2_1:58649029-58649048 | Msa0214210:intron | 30.0% | |
| AAAACTTAGATATAAGGCCA+TGG | + | chr2_1:58649149-58649168 | None:intergenic | 30.0% | |
| AAACTTGAGTAACCAAATTC+TGG | - | chr2_1:58649213-58649232 | Msa0214210:intron | 30.0% | |
| TTCAAGCACATTCTATACAA+TGG | + | chr2_1:58649498-58649517 | None:intergenic | 30.0% | |
| TTGTATAGAATGTGCTTGAA+AGG | - | chr2_1:58649498-58649517 | Msa0214210:intron | 30.0% | |
| TGTATAGAATGTGCTTGAAA+GGG | - | chr2_1:58649499-58649518 | Msa0214210:intron | 30.0% | |
| ACTAAGCATGTTATCAATTC+AGG | + | chr2_1:58649579-58649598 | None:intergenic | 30.0% | |
| GAAAATAATTGAACACAAGC+AGG | - | chr2_1:58649805-58649824 | Msa0214210:intron | 30.0% | |
| AAATAAGGATGAGGAAGTTT+CGG | + | chr2_1:58650031-58650050 | None:intergenic | 30.0% | |
| AAATGCAAATTCATCTGAGA+TGG | + | chr2_1:58650434-58650453 | None:intergenic | 30.0% | |
| ATCTCAGATGAATTTGCATT+TGG | - | chr2_1:58650433-58650452 | Msa0214210:intron | 30.0% | |
| AAACATTGACAAAGACATAC+GGG | + | chr2_1:58650700-58650719 | None:intergenic | 30.0% | |
| GAAACATTGACAAAGACATA+CGG | + | chr2_1:58650701-58650720 | None:intergenic | 30.0% | |
| CAGGTGAATTCTTTGTAAAT+AGG | - | chr2_1:58650781-58650800 | Msa0214210:five_prime_UTR | 30.0% | |
| AAAGGAAAGGGAAAAAGTGA+AGG | + | chr2_1:58647205-58647224 | None:intergenic | 35.0% | |
| TGGGGTGTAGTTAGTATATT+TGG | + | chr2_1:58647303-58647322 | None:intergenic | 35.0% | |
| ! | AACTTTGAAGGAGAGAAAGA+GGG | + | chr2_1:58647346-58647365 | None:intergenic | 35.0% |
| CATTGAGAGTAACTCTCAAA+AGG | + | chr2_1:58647396-58647415 | None:intergenic | 35.0% | |
| ! | ATAGCTGCTAAGATTTTCTC+TGG | - | chr2_1:58647488-58647507 | Msa0214210:intron | 35.0% |
| ! | TTCTCTGGTTTGAGAATGTA+TGG | - | chr2_1:58647503-58647522 | Msa0214210:intron | 35.0% |
| AAAGCTCTTTGTAATGAAGC+TGG | - | chr2_1:58647569-58647588 | Msa0214210:CDS | 35.0% | |
| AAAAAAATTTACACCGACGG+TGG | - | chr2_1:58647897-58647916 | Msa0214210:CDS | 35.0% | |
| !!! | CCCACCTTTTAAAACATTGA+TGG | + | chr2_1:58647967-58647986 | None:intergenic | 35.0% |
| !!! | ATGTTTTAAAAGGTGGGTTG+TGG | - | chr2_1:58647970-58647989 | Msa0214210:CDS | 35.0% |
| TAATGCAACCTTTGGATTCA+CGG | - | chr2_1:58648043-58648062 | Msa0214210:CDS | 35.0% | |
| ! | GTTGATGTTGATGAGGATTA+TGG | - | chr2_1:58648068-58648087 | Msa0214210:CDS | 35.0% |
| ! | TTTTGGATTGACAACGAGTT+TGG | - | chr2_1:58648121-58648140 | Msa0214210:CDS | 35.0% |
| TAATAAAATCACACCGGTGT+CGG | + | chr2_1:58648157-58648176 | None:intergenic | 35.0% | |
| ATTAGCCATTTATGTCTCTC+TGG | + | chr2_1:58648478-58648497 | None:intergenic | 35.0% | |
| ! | AAGTGGTCATGACATTTTAG+TGG | - | chr2_1:58648649-58648668 | Msa0214210:intron | 35.0% |
| !! | AGTGGTCATGACATTTTAGT+GGG | - | chr2_1:58648650-58648669 | Msa0214210:intron | 35.0% |
| ! | AGGCAAAAGGGTATACATAA+TGG | + | chr2_1:58648950-58648969 | None:intergenic | 35.0% |
| ATCAATCATGAGAAGAAGTG+AGG | + | chr2_1:58648970-58648989 | None:intergenic | 35.0% | |
| ! | GATTGATCCTTCTTTTGTGA+AGG | - | chr2_1:58648983-58649002 | Msa0214210:intron | 35.0% |
| ! | GTAACTAGAAGTGTGACATT+TGG | - | chr2_1:58649300-58649319 | Msa0214210:intron | 35.0% |
| ! | TGCGAATTTGAGGCTATATA+TGG | - | chr2_1:58649373-58649392 | Msa0214210:intron | 35.0% |
| ATTAGATGGATAAGCATGCA+AGG | + | chr2_1:58649642-58649661 | None:intergenic | 35.0% | |
| ACCATATCCATGTTCTCTAA+AGG | + | chr2_1:58649839-58649858 | None:intergenic | 35.0% | |
| TTAGAGAACATGGATATGGT+TGG | - | chr2_1:58649839-58649858 | Msa0214210:intron | 35.0% | |
| TTGGATGGTAAGATGAACAA+GGG | + | chr2_1:58649883-58649902 | None:intergenic | 35.0% | |
| CCACTATGAAAATAAGGATG+AGG | + | chr2_1:58650040-58650059 | None:intergenic | 35.0% | |
| !!! | CCTCATCCTTATTTTCATAG+TGG | - | chr2_1:58650037-58650056 | Msa0214210:intron | 35.0% |
| ATGGAGCCACTATGAAAATA+AGG | + | chr2_1:58650046-58650065 | None:intergenic | 35.0% | |
| ATTCAGGATCAACTATCTGA+CGG | + | chr2_1:58650213-58650232 | None:intergenic | 35.0% | |
| CGAGATACAAGATTGAATGT+CGG | + | chr2_1:58650277-58650296 | None:intergenic | 35.0% | |
| TGAAAAACCATCTTCCTTGA+AGG | + | chr2_1:58650311-58650330 | None:intergenic | 35.0% | |
| ! | TTCAAGGAAGATGGTTTTTC+AGG | - | chr2_1:58650310-58650329 | Msa0214210:intron | 35.0% |
| CATTTGGAAGCAACACATTT+GGG | - | chr2_1:58650449-58650468 | Msa0214210:CDS | 35.0% | |
| CATCTGCTACAAATTCTTCA+TGG | + | chr2_1:58650504-58650523 | None:intergenic | 35.0% | |
| TGTCAAGAGAACATTTCAGA+AGG | + | chr2_1:58650763-58650782 | None:intergenic | 35.0% | |
| !! | TTCTGAAATGTTCTCTTGAC+AGG | - | chr2_1:58650762-58650781 | Msa0214210:five_prime_UTR | 35.0% |
| ! | TTTGGAAATGGATTTGGAGG+TGG | + | chr2_1:58647285-58647304 | None:intergenic | 40.0% |
| ! | GAACTTTGAAGGAGAGAAAG+AGG | + | chr2_1:58647347-58647366 | None:intergenic | 40.0% |
| !! | TCAAAAGGGTGTTCACGAAA+TGG | + | chr2_1:58647381-58647400 | None:intergenic | 40.0% |
| GAGTTACTCTCAATGACATC+TGG | - | chr2_1:58647401-58647420 | Msa0214210:intron | 40.0% | |
| TACAAGACTACCAACATGGA+AGG | - | chr2_1:58647424-58647443 | Msa0214210:intron | 40.0% | |
| CTCTTTGTAATGAAGCTGGT+TGG | - | chr2_1:58647573-58647592 | Msa0214210:CDS | 40.0% | |
| TTACGATAAGTGGTTCCATC+AGG | + | chr2_1:58647608-58647627 | None:intergenic | 40.0% | |
| TGATGGAACCACTTATCGTA+AGG | - | chr2_1:58647607-58647626 | Msa0214210:CDS | 40.0% | |
| !! | TAAAAGGTGGGTTGTGGTAA+TGG | - | chr2_1:58647976-58647995 | Msa0214210:CDS | 40.0% |
| !! | TTGTGGTAATGGTTGTGTCT+CGG | - | chr2_1:58647987-58648006 | Msa0214210:CDS | 40.0% |
| AATGGCACTAATGCAACCTT+TGG | - | chr2_1:58648035-58648054 | Msa0214210:CDS | 40.0% | |
| ATCAACTACCGTGAATCCAA+AGG | + | chr2_1:58648054-58648073 | None:intergenic | 40.0% | |
| ! | CTATGATGATGTGGTGTAGA+TGG | - | chr2_1:58648291-58648310 | Msa0214210:intron | 40.0% |
| GATCTTTCTCCAGTAGAAAG+TGG | - | chr2_1:58648632-58648651 | Msa0214210:intron | 40.0% | |
| ATGTCATGACCACTTTCTAC+TGG | + | chr2_1:58648644-58648663 | None:intergenic | 40.0% | |
| !! | CAGAAAAAGGCACCAAACAA+GGG | + | chr2_1:58648765-58648784 | None:intergenic | 40.0% |
| !! | ACAGAAAAAGGCACCAAACA+AGG | + | chr2_1:58648766-58648785 | None:intergenic | 40.0% |
| ATGGAATGGAACACCTGAAT+TGG | + | chr2_1:58648842-58648861 | None:intergenic | 40.0% | |
| TGAGAAGAAGTGAGGCAAAA+GGG | + | chr2_1:58648962-58648981 | None:intergenic | 40.0% | |
| ATGAGAAGAAGTGAGGCAAA+AGG | + | chr2_1:58648963-58648982 | None:intergenic | 40.0% | |
| TCAAACATGTCCCTCTCATT+TGG | + | chr2_1:58649042-58649061 | None:intergenic | 40.0% | |
| GTGACATTTGGCTATGTTAG+AGG | - | chr2_1:58649312-58649331 | Msa0214210:intron | 40.0% | |
| GAATGTGCTTGAAAGGGATA+TGG | - | chr2_1:58649505-58649524 | Msa0214210:intron | 40.0% | |
| ! | ATGCAAGCCTTTAGAGAACA+TGG | - | chr2_1:58649829-58649848 | Msa0214210:intron | 40.0% |
| ! | GCCTTTAGAGAACATGGATA+TGG | - | chr2_1:58649835-58649854 | Msa0214210:intron | 40.0% |
| CTTGGATGGTAAGATGAACA+AGG | + | chr2_1:58649884-58649903 | None:intergenic | 40.0% | |
| ATGGTAATTCCCTCATTCCA+TGG | - | chr2_1:58649966-58649985 | Msa0214210:intron | 40.0% | |
| !! | GTTTTTGAGCCATGGAATGA+GGG | + | chr2_1:58649978-58649997 | None:intergenic | 40.0% |
| ACTTCGATGATCAATCTGCA+CGG | - | chr2_1:58650128-58650147 | Msa0214210:intron | 40.0% | |
| GTCAGATAGTTGATCCTGAA+TGG | - | chr2_1:58650212-58650231 | Msa0214210:intron | 40.0% | |
| !! | TTGATCCTGAATGGTTTGCT+GGG | - | chr2_1:58650221-58650240 | Msa0214210:intron | 40.0% |
| AGATTGAATGTCGGAGAAGT+TGG | + | chr2_1:58650268-58650287 | None:intergenic | 40.0% | |
| GCATTTGGAAGCAACACATT+TGG | - | chr2_1:58650448-58650467 | Msa0214210:CDS | 40.0% | |
| ! | ATTTGGGATTGTGAAGCCTT+GGG | - | chr2_1:58650465-58650484 | Msa0214210:CDS | 40.0% |
| GATGATCTTGAACTCACACT+TGG | - | chr2_1:58650520-58650539 | Msa0214210:CDS | 40.0% | |
| CGGAAAAATGAGAGAGTGAG+AGG | + | chr2_1:58647248-58647267 | None:intergenic | 45.0% | |
| ! | GAAATGGATTTGGAGGTGGA+GGG | + | chr2_1:58647281-58647300 | None:intergenic | 45.0% |
| GTGTGGAAGTAGAAGAAGTG+GGG | + | chr2_1:58647321-58647340 | None:intergenic | 45.0% | |
| GGTGTGGAAGTAGAAGAAGT+GGG | + | chr2_1:58647322-58647341 | None:intergenic | 45.0% | |
| AGGTGTGGAAGTAGAAGAAG+TGG | + | chr2_1:58647323-58647342 | None:intergenic | 45.0% | |
| TTTGAAGGAGAGAAAGAGGG+AGG | + | chr2_1:58647343-58647362 | None:intergenic | 45.0% | |
| CTGGTACAAGACTACCAACA+TGG | - | chr2_1:58647420-58647439 | Msa0214210:intron | 45.0% | |
| TTCTCTCTCTCCTTCCATGT+TGG | + | chr2_1:58647437-58647456 | None:intergenic | 45.0% | |
| AGGAGAGAGAGAACAACAAG+AGG | - | chr2_1:58647444-58647463 | Msa0214210:intron | 45.0% | |
| TAATTGTCATGCACCACCGT+CGG | + | chr2_1:58647913-58647932 | None:intergenic | 45.0% | |
| ! | CACGGTAGTTGATGTTGATG+AGG | - | chr2_1:58648061-58648080 | Msa0214210:CDS | 45.0% |
| TGGTAAAATCACACCGACAC+CGG | - | chr2_1:58648141-58648160 | Msa0214210:CDS | 45.0% | |
| GTGACCAAAATGCCCTTGTT+TGG | - | chr2_1:58648750-58648769 | Msa0214210:intron | 45.0% | |
| ! | GAGGGTACATTTGCCAATTC+AGG | - | chr2_1:58648826-58648845 | Msa0214210:intron | 45.0% |
| CAGGTGTTCCATTCCATAGT+TGG | - | chr2_1:58648845-58648864 | Msa0214210:intron | 45.0% | |
| CTGAGCACCTTCACAAAAGA+AGG | + | chr2_1:58648993-58649012 | None:intergenic | 45.0% | |
| !! | CAAGGGCTTGTTGAGAAGTT+TGG | + | chr2_1:58649679-58649698 | None:intergenic | 45.0% |
| GAGAACATGGATATGGTTGG+TGG | - | chr2_1:58649842-58649861 | Msa0214210:intron | 45.0% | |
| ! | AAGGGGATGAAGATGGACTT+GGG | + | chr2_1:58649925-58649944 | None:intergenic | 45.0% |
| ! | TAAGGGGATGAAGATGGACT+TGG | + | chr2_1:58649926-58649945 | None:intergenic | 45.0% |
| GTTACGATTTGCAGCGTAAG+GGG | + | chr2_1:58649942-58649961 | None:intergenic | 45.0% | |
| CGTTACGATTTGCAGCGTAA+GGG | + | chr2_1:58649943-58649962 | None:intergenic | 45.0% | |
| !! | GGTTTTTGAGCCATGGAATG+AGG | + | chr2_1:58649979-58649998 | None:intergenic | 45.0% |
| TGATCCTGAAGATGAAGCTG+TGG | + | chr2_1:58650005-58650024 | None:intergenic | 45.0% | |
| TCGAAGTCAGCATTCAATCG+CGG | + | chr2_1:58650115-58650134 | None:intergenic | 45.0% | |
| ! | GTTGATCCTGAATGGTTTGC+TGG | - | chr2_1:58650220-58650239 | Msa0214210:intron | 45.0% |
| TTGATCCCAGCAAACCATTC+AGG | + | chr2_1:58650229-58650248 | None:intergenic | 45.0% | |
| CATCTTCCTTGAAGGCAAAC+GGG | + | chr2_1:58650303-58650322 | None:intergenic | 45.0% | |
| CCATCTTCCTTGAAGGCAAA+CGG | + | chr2_1:58650304-58650323 | None:intergenic | 45.0% | |
| !!! | GAAGATGGTTTTTCAGGCAG+CGG | - | chr2_1:58650316-58650335 | Msa0214210:intron | 45.0% |
| ! | TCTGAGATGGCTTCAGACAT+TGG | + | chr2_1:58650421-58650440 | None:intergenic | 45.0% |
| ! | CATTTGGGATTGTGAAGCCT+TGG | - | chr2_1:58650464-58650483 | Msa0214210:CDS | 45.0% |
| ! | CACTTGGTAACTCAAAGACC+AGG | - | chr2_1:58650536-58650555 | Msa0214210:CDS | 45.0% |
| CGACACAAACATGTCGACAT+TGG | + | chr2_1:58650674-58650693 | None:intergenic | 45.0% | |
| ACTTGTGTTGCAAACCTCCT+AGG | - | chr2_1:58650817-58650836 | Msa0214210:five_prime_UTR | 45.0% | |
| !!! | ATATTATAATATCATTTTAT+AGG | + | chr2_1:58647763-58647782 | None:intergenic | 5.0% |
| !!! | ATATTATAATATCATTTTAT+AGG | + | chr2_1:58647763-58647782 | None:intergenic | 5.0% |
| AGGTGGAGGGTGATCTTTGT+CGG | + | chr2_1:58647268-58647287 | None:intergenic | 50.0% | |
| ! | GGAAATGGATTTGGAGGTGG+AGG | + | chr2_1:58647282-58647301 | None:intergenic | 50.0% |
| GGTTGGACTGTTGAACCTGA+TGG | - | chr2_1:58647590-58647609 | Msa0214210:CDS | 50.0% | |
| !!! | GGCACCAAACAAGGGCATTT+TGG | + | chr2_1:58648757-58648776 | None:intergenic | 50.0% |
| !! | TTCAGAGTTGGTGGCCACAT+AGG | - | chr2_1:58648921-58648940 | Msa0214210:intron | 50.0% |
| TCATCTTACCATCCAAGCCC+CGG | - | chr2_1:58649887-58649906 | Msa0214210:intron | 50.0% | |
| ! | GGATGAAGATGGACTTGGGA+AGG | + | chr2_1:58649921-58649940 | None:intergenic | 50.0% |
| GCGTTACGATTTGCAGCGTA+AGG | + | chr2_1:58649944-58649963 | None:intergenic | 50.0% | |
| GCTGCAAATCGTAACGCTGA+TGG | - | chr2_1:58649947-58649966 | Msa0214210:intron | 50.0% | |
| !! | GTGGAGAGGTTTTTGAGCCA+TGG | + | chr2_1:58649986-58650005 | None:intergenic | 50.0% |
| CTGAAGATGAAGCTGTGGAG+AGG | + | chr2_1:58650000-58650019 | None:intergenic | 50.0% | |
| CTCTCCACAGCTTCATCTTC+AGG | - | chr2_1:58649998-58650017 | Msa0214210:intron | 50.0% | |
| AATCGCGGTGTTCTAGCAGT+CGG | + | chr2_1:58650100-58650119 | None:intergenic | 50.0% | |
| TAATGTTGTCCAGTCCACCC+GGG | + | chr2_1:58650154-58650173 | None:intergenic | 50.0% | |
| GTAATGTTGTCCAGTCCACC+CGG | + | chr2_1:58650155-58650174 | None:intergenic | 50.0% | |
| TACTCCTTCCTGCCTTCTTC+CGG | - | chr2_1:58650172-58650191 | Msa0214210:intron | 50.0% | |
| GATCAACTATCTGACGGCCA+GGG | + | chr2_1:58650207-58650226 | None:intergenic | 50.0% | |
| !! | GGAGAAGTTGGACTAGCATG+TGG | + | chr2_1:58650256-58650275 | None:intergenic | 50.0% |
| CCGTTTGCCTTCAAGGAAGA+TGG | - | chr2_1:58650301-58650320 | Msa0214210:intron | 50.0% | |
| TGTTCTCCAGCTATTCCAGC+AGG | - | chr2_1:58650373-58650392 | Msa0214210:intron | 50.0% | |
| TCAAAGCCTGCTGGAATAGC+TGG | + | chr2_1:58650382-58650401 | None:intergenic | 50.0% | |
| GCAGTTTGATCAAAGCCTGC+TGG | + | chr2_1:58650391-58650410 | None:intergenic | 50.0% | |
| TGAAGCCTTGGGAAGGAGAA+AGG | - | chr2_1:58650476-58650495 | Msa0214210:CDS | 50.0% | |
| TGGATCCTTTCTCCTTCCCA+AGG | + | chr2_1:58650484-58650503 | None:intergenic | 50.0% | |
| GTGTCTGACACTCACTGACA+CGG | - | chr2_1:58650595-58650614 | Msa0214210:CDS | 50.0% | |
| ! | ATCACTTGCAGTGGACTCCT+AGG | + | chr2_1:58650837-58650856 | None:intergenic | 50.0% |
| AGGAGTCCACTGCAAGTGAT+CGG | - | chr2_1:58650837-58650856 | Msa0214210:five_prime_UTR | 50.0% | |
| ! | TACGTACCGATCACTTGCAG+TGG | + | chr2_1:58650846-58650865 | None:intergenic | 50.0% |
| AGGAGAGAAAGAGGGAGGTG+TGG | + | chr2_1:58647338-58647357 | None:intergenic | 55.0% | |
| ACTTGGGAAGGAAGACGAGC+CGG | + | chr2_1:58649909-58649928 | None:intergenic | 55.0% | |
| GCAGCGTAAGGGGATGAAGA+TGG | + | chr2_1:58649932-58649951 | None:intergenic | 55.0% | |
| !! | AGGTGTGACAGGAGCACTGA+TGG | + | chr2_1:58650065-58650084 | None:intergenic | 55.0% |
| TCTAGCAGTCGGAGAGCTCA+GGG | + | chr2_1:58650089-58650108 | None:intergenic | 55.0% | |
| TTCTAGCAGTCGGAGAGCTC+AGG | + | chr2_1:58650090-58650109 | None:intergenic | 55.0% | |
| GATGATCAATCTGCACGGCC+CGG | - | chr2_1:58650133-58650152 | Msa0214210:intron | 55.0% | |
| ATGATCAATCTGCACGGCCC+GGG | - | chr2_1:58650134-58650153 | Msa0214210:intron | 55.0% | |
| GGATCAACTATCTGACGGCC+AGG | + | chr2_1:58650208-58650227 | None:intergenic | 55.0% | |
| TCGAAGCCCGTTTGCCTTCA+AGG | - | chr2_1:58650294-58650313 | Msa0214210:intron | 55.0% | |
| AACATGCCCCTGACTGTCCA+GGG | + | chr2_1:58650357-58650376 | None:intergenic | 55.0% | |
| GGGATTGTGAAGCCTTGGGA+AGG | - | chr2_1:58650469-58650488 | Msa0214210:CDS | 55.0% | |
| ! | ACTTGCAGTGGACTCCTAGG+AGG | + | chr2_1:58650834-58650853 | None:intergenic | 55.0% |
| TTGGGAAGGAAGACGAGCCG+GGG | + | chr2_1:58649907-58649926 | None:intergenic | 60.0% | |
| CTTGGGAAGGAAGACGAGCC+GGG | + | chr2_1:58649908-58649927 | None:intergenic | 60.0% | |
| CTAGCAGTCGGAGAGCTCAG+GGG | + | chr2_1:58650088-58650107 | None:intergenic | 60.0% | |
| AGGACCGGAAGAAGGCAGGA+AGG | + | chr2_1:58650179-58650198 | None:intergenic | 60.0% | |
| TTGGAGGACCGGAAGAAGGC+AGG | + | chr2_1:58650183-58650202 | None:intergenic | 60.0% | |
| ACTATCTGACGGCCAGGGCT+TGG | + | chr2_1:58650202-58650221 | None:intergenic | 60.0% | |
| ATGTGGACCCCTGGACAGTC+AGG | - | chr2_1:58650346-58650365 | Msa0214210:intron | 60.0% | |
| TGTGGACCCCTGGACAGTCA+GGG | - | chr2_1:58650347-58650366 | Msa0214210:intron | 60.0% | |
| ACATGCCCCTGACTGTCCAG+GGG | + | chr2_1:58650356-58650375 | None:intergenic | 60.0% | |
| GAACATGCCCCTGACTGTCC+AGG | + | chr2_1:58650358-58650377 | None:intergenic | 60.0% | |
| AAGACGAGCCGGGGCTTGGA+TGG | + | chr2_1:58649898-58649917 | None:intergenic | 65.0% | |
| AAGGAAGACGAGCCGGGGCT+TGG | + | chr2_1:58649902-58649921 | None:intergenic | 65.0% | |
| ! | GAGCTCAGGGGAGGTGTGAC+AGG | + | chr2_1:58650076-58650095 | None:intergenic | 65.0% |
| ATCAATCTGCACGGCCCGGG+TGG | - | chr2_1:58650137-58650156 | Msa0214210:intron | 65.0% | |
| GGGCTTGGAGGACCGGAAGA+AGG | + | chr2_1:58650187-58650206 | None:intergenic | 65.0% | |
| TCTTCCGGTCCTCCAAGCCC+TGG | - | chr2_1:58650187-58650206 | Msa0214210:intron | 65.0% | |
| ATCTGACGGCCAGGGCTTGG+AGG | + | chr2_1:58650199-58650218 | None:intergenic | 65.0% | |
| GTGGACCCCTGGACAGTCAG+GGG | - | chr2_1:58650348-58650367 | Msa0214210:intron | 65.0% | |
| GCAGTCGGAGAGCTCAGGGG+AGG | + | chr2_1:58650085-58650104 | None:intergenic | 70.0% | |
| ACGGCCAGGGCTTGGAGGAC+CGG | + | chr2_1:58650194-58650213 | None:intergenic | 70.0% | |
| CAGGCAGCGGTTCGCGCATG+TGG | - | chr2_1:58650329-58650348 | Msa0214210:intron | 70.0% | |
| GGTTCGCGCATGTGGACCCC+TGG | - | chr2_1:58650337-58650356 | Msa0214210:intron | 70.0% | |
| TCTGCACGGCCCGGGTGGAC+TGG | - | chr2_1:58650142-58650161 | Msa0214210:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 58647202 | 58650866 | 58647202 | ID=Msa0214210;Name=Msa0214210 |
| chr2_1 | mRNA | 58647202 | 58650866 | 58647202 | ID=Msa0214210-mRNA-1;Parent=Msa0214210;Name=Msa0214210-mRNA-1;_AED=0.34;_eAED=0.34;_QI=211|0.5|0.66|1|1|1|3|0|336 |
| chr2_1 | exon | 58647202 | 58647265 | 58647202 | ID=Msa0214210-mRNA-1:exon:16115;Parent=Msa0214210-mRNA-1 |
| chr2_1 | exon | 58647511 | 58648241 | 58647511 | ID=Msa0214210-mRNA-1:exon:16114;Parent=Msa0214210-mRNA-1 |
| chr2_1 | exon | 58650440 | 58650866 | 58650440 | ID=Msa0214210-mRNA-1:exon:16113;Parent=Msa0214210-mRNA-1 |
| chr2_1 | five_prime_UTR | 58650656 | 58650866 | 58650656 | ID=Msa0214210-mRNA-1:five_prime_utr;Parent=Msa0214210-mRNA-1 |
| chr2_1 | CDS | 58650440 | 58650655 | 58650440 | ID=Msa0214210-mRNA-1:cds;Parent=Msa0214210-mRNA-1 |
| chr2_1 | CDS | 58647511 | 58648241 | 58647511 | ID=Msa0214210-mRNA-1:cds;Parent=Msa0214210-mRNA-1 |
| chr2_1 | CDS | 58647202 | 58647265 | 58647202 | ID=Msa0214210-mRNA-1:cds;Parent=Msa0214210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
