AlfalfaGEDB | Msa0332280

M. sativa cultivar zhongmu-4 / Msa0332280

KEGG: -
GO: -
PFAM: PF05687.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332280	AES66525.2	97.490	239	6	0	1	239	80	318	5.06e-166	479

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332280	sp\|Q9ZV88\|BEH4_ARATH	61.024	254	73	7	1	237	81	325	5.80e-82	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0332280	TF	BES1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0069350	Msa0332280	0.827472	1.535632e-54	-8.615850e-47
Msa0134930	Msa0332280	0.833395	5.467304e-56	-8.615850e-47
Msa0214210	Msa0332280	0.859530	3.881851e-63	-8.615850e-47
Msa0233570	Msa0332280	0.814913	1.208907e-51	-8.615850e-47
Msa0254540	Msa0332280	0.974283	6.967310e-138	-8.615850e-47
Msa0274650	Msa0332280	0.804747	1.862009e-49	-8.615850e-47
Msa0293840	Msa0332280	0.937119	5.814823e-98	-8.615850e-47
Msa0312250	Msa0332280	0.819923	8.999160e-53	-8.615850e-47
Msa0332280	Msa0461550	0.809459	1.872929e-50	-8.615850e-47
Msa0332280	Msa0557850	0.849445	3.219218e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332280	MtrunA17_Chr2g0315201	98.312	237	4	0	1	237	80	316	5.29e-169	468
Msa0332280	MtrunA17_Chr2g0315211	68.033	244	71	1	1	237	80	323	5.03e-111	322

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0332280	AT1G78700.1	61.024	254	73	7	1	237	81	325	5.89e-83	251
Msa0332280	AT4G18890.2	52.049	244	71	10	1	237	4	208	3.09e-61	191
Msa0332280	AT4G18890.1	52.049	244	71	10	1	237	80	284	3.07e-60	191
Msa0332280	AT1G19350.3	33.692	279	98	13	2	235	118	354	4.16e-14	71.2
Msa0332280	AT1G19350.5	33.692	279	98	13	2	235	96	332	6.16e-14	70.5
Msa0332280	AT1G19350.1	33.692	279	98	13	2	235	96	332	6.16e-14	70.5
Msa0332280	AT1G19350.6	33.692	279	98	13	2	235	96	332	6.16e-14	70.5
Msa0332280	AT1G19350.4	33.692	279	98	13	2	235	96	332	6.16e-14	70.5

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Find 87 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAGGATGAGGAAGTTT+CGG	0.409483	2_4:+49191808	None:intergenic
AAATGCAAATTCATCTGAAA+TGG	0.358381	2_4:+49191405	None:intergenic
AACATGCCCCTGACTGTCCA+GGG	0.556233	2_4:+49191482	None:intergenic
AAGACGAGCCGGGGCTTGGA+TGG	0.534291	2_4:+49191941	None:intergenic
AAGGAAGACGAGCCGGGGCT+TGG	0.330367	2_4:+49191937	None:intergenic
AAGGGGATGATGATGGACTT+GGG	0.629431	2_4:+49191914	None:intergenic
AATCGCGGTGTTCTAGCAGT+CGG	0.621032	2_4:+49191739	None:intergenic
ACATGCCCCTGACTGTCCAG+GGG	0.666992	2_4:+49191483	None:intergenic
ACGGCCAGGGCTTGGAGGAC+CGG	0.427775	2_4:+49191645	None:intergenic
ACTATCTGACGGCCAGGGCT+TGG	0.399313	2_4:+49191637	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAAGGATGAGGAAGTTT+CGG	+	chr2_4:49191456-49191475	None:intergenic	30.0%
TTGGATGGTAAGATGAACAA+GGG	+	chr2_4:49191308-49191327	None:intergenic	35.0%
ATGGTAATTCTCTCATTCCA+TGG	-	chr2_4:49191391-49191410	Msa0332280:CDS	35.0%
CCACTATGAAAATAAGGATG+AGG	+	chr2_4:49191465-49191484	None:intergenic	35.0%
ATGGAGCCACTATGAAAATA+AGG	+	chr2_4:49191471-49191490	None:intergenic	35.0%
ATTCAGGATCAACTATCTGA+CGG	+	chr2_4:49191638-49191657	None:intergenic	35.0%
CGAGATACAAGATTGAATGT+CGG	+	chr2_4:49191702-49191721	None:intergenic	35.0%
CATTTGGAAGCAACACATTT+GGG	-	chr2_4:49191874-49191893	Msa0332280:CDS	35.0%
CATCTGCTACAAATTCTTCA+TGG	+	chr2_4:49191929-49191948	None:intergenic	35.0%
CTTGGATGGTAAGATGAACA+AGG	+	chr2_4:49191309-49191328	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	49191273	49192010	49191273	ID=Msa0332280;Name=Msa0332280
chr2_4	mRNA	49191273	49192010	49191273	ID=Msa0332280-mRNA-1;Parent=Msa0332280;Name=Msa0332280-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|245
chr2_4	exon	49191273	49192010	49191273	ID=Msa0332280-mRNA-1:exon:14761;Parent=Msa0332280-mRNA-1
chr2_4	CDS	49191273	49192010	49191273	ID=Msa0332280-mRNA-1:cds;Parent=Msa0332280-mRNA-1

Gene Sequence

>Msa0332280

ATGGATATGGTTGGTGGATCATCAGCTGCAAGCCCTTGTTCATCTTACCATCCAAGCCCCGGCTCGTCTTCCTTCCCAAGTCCATCATCATCCCCTTACGCTGCAAATCGTAACGCTGATGGTAATTCTCTCATTCCATGGCTCAAAAACCTCTCCACAGCTTCATCTTCAGGATCATCTCCGAAACTTCCTCATCCTTATTTTCATAGTGGCTCCATCAGTGCTCCTGTCACACCTCCCCTGAGCTCTCCGACTGCTAGAACACCGCGATTGAATGCTGACTTCGATGATCAATCTGCACGGCCCGGGTGGACTGGACAACATTACTCCTTCCTGCCTTCTTCCGGTCCTCCAAGCCCTGGCCGTCAGATAGTTGATCCTGAATGGTTTGCTGGGATCAAACTTCCACATGCTAGTCCAACTTCTCCGACATTCAATCTTGTATCTCGAAGCCCATTTGCCTTCAAGGAAGATGCTTTTTCAGGCAGCGGTTCGCGCATGTGGACCCCTGGACAGTCAGGGGCATGTTCTCCAGCTATTGCAGCAGGCTTTGATCAAACTGCTGACATTCCAATGTCTGAAGCCATTTCAGATGAATTTGCATTTGGAAGCAACACATTTGGGATTGTGAAGCCTTGGGAAGGAGAAAGGATCCATGAAGAATTTGTAGCAGATGATCTTGAACTCACACTTGGTAACTCAAAGACCAGGTACTTATTATCATTATCATCATTGTAG

Protein sequence

>Msa0332280

MDMVGGSSAASPCSSYHPSPGSSSFPSPSSSPYAANRNADGNSLIPWLKNLSTASSSGSSPKLPHPYFHSGSISAPVTPPLSSPTARTPRLNADFDDQSARPGWTGQHYSFLPSSGPPSPGRQIVDPEWFAGIKLPHASPTSPTFNLVSRSPFAFKEDAFSGSGSRMWTPGQSGACSPAIAAGFDQTADIPMSEAISDEFAFGSNTFGIVKPWEGERIHEEFVADDLELTLGNSKTRYLLSLSSL*