Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0332280 | AES66525.2 | 97.490 | 239 | 6 | 0 | 1 | 239 | 80 | 318 | 5.06e-166 | 479 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0332280 | sp|Q9ZV88|BEH4_ARATH | 61.024 | 254 | 73 | 7 | 1 | 237 | 81 | 325 | 5.80e-82 | 251 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0332280 | TF | BES1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0069350 | Msa0332280 | 0.827472 | 1.535632e-54 | -8.615850e-47 |
Msa0134930 | Msa0332280 | 0.833395 | 5.467304e-56 | -8.615850e-47 |
Msa0214210 | Msa0332280 | 0.859530 | 3.881851e-63 | -8.615850e-47 |
Msa0233570 | Msa0332280 | 0.814913 | 1.208907e-51 | -8.615850e-47 |
Msa0254540 | Msa0332280 | 0.974283 | 6.967310e-138 | -8.615850e-47 |
Msa0274650 | Msa0332280 | 0.804747 | 1.862009e-49 | -8.615850e-47 |
Msa0293840 | Msa0332280 | 0.937119 | 5.814823e-98 | -8.615850e-47 |
Msa0312250 | Msa0332280 | 0.819923 | 8.999160e-53 | -8.615850e-47 |
Msa0332280 | Msa0461550 | 0.809459 | 1.872929e-50 | -8.615850e-47 |
Msa0332280 | Msa0557850 | 0.849445 | 3.219218e-60 | -8.615850e-47 |
Msa0332280 | Msa0612520 | 0.809930 | 1.483460e-50 | -8.615850e-47 |
Msa0332280 | Msa0653160 | 0.846927 | 1.597163e-59 | -8.615850e-47 |
Msa0332280 | Msa0655710 | 0.813754 | 2.181117e-51 | -8.615850e-47 |
Msa0332280 | Msa0688620 | 0.815687 | 8.136992e-52 | -8.615850e-47 |
Msa0332280 | Msa0695560 | 0.800895 | 1.162951e-48 | -8.615850e-47 |
Msa0332280 | Msa0749190 | 0.819882 | 9.197588e-53 | -8.615850e-47 |
Msa0332280 | Msa0750520 | 0.816980 | 4.180448e-52 | -8.615850e-47 |
Msa0332280 | Msa0930950 | -0.825944 | 3.555787e-54 | -8.615850e-47 |
Msa0332280 | Msa0978980 | 0.812677 | 3.757996e-51 | -8.615850e-47 |
Msa0332280 | Msa1033420 | 0.828927 | 6.846840e-55 | -8.615850e-47 |
Msa0332280 | Msa1071410 | 0.814917 | 1.206951e-51 | -8.615850e-47 |
Msa0332280 | Msa1073060 | 0.850767 | 1.372001e-60 | -8.615850e-47 |
Msa0332280 | Msa1091050 | 0.805711 | 1.170129e-49 | -8.615850e-47 |
Msa0332280 | Msa1133970 | 0.811220 | 7.808060e-51 | -8.615850e-47 |
Msa0332280 | Msa1134040 | 0.812802 | 3.530108e-51 | -8.615850e-47 |
Msa0332280 | Msa1160780 | 0.867235 | 1.589687e-65 | -8.615850e-47 |
Msa0332280 | Msa1349850 | -0.824516 | 7.739218e-54 | -8.615850e-47 |
Msa0332280 | Msa1381800 | 0.815123 | 1.086042e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0332280 | MtrunA17_Chr2g0315201 | 98.312 | 237 | 4 | 0 | 1 | 237 | 80 | 316 | 5.29e-169 | 468 |
Msa0332280 | MtrunA17_Chr2g0315211 | 68.033 | 244 | 71 | 1 | 1 | 237 | 80 | 323 | 5.03e-111 | 322 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0332280 | AT1G78700.1 | 61.024 | 254 | 73 | 7 | 1 | 237 | 81 | 325 | 5.89e-83 | 251 |
Msa0332280 | AT4G18890.2 | 52.049 | 244 | 71 | 10 | 1 | 237 | 4 | 208 | 3.09e-61 | 191 |
Msa0332280 | AT4G18890.1 | 52.049 | 244 | 71 | 10 | 1 | 237 | 80 | 284 | 3.07e-60 | 191 |
Msa0332280 | AT1G19350.3 | 33.692 | 279 | 98 | 13 | 2 | 235 | 118 | 354 | 4.16e-14 | 71.2 |
Msa0332280 | AT1G19350.5 | 33.692 | 279 | 98 | 13 | 2 | 235 | 96 | 332 | 6.16e-14 | 70.5 |
Msa0332280 | AT1G19350.1 | 33.692 | 279 | 98 | 13 | 2 | 235 | 96 | 332 | 6.16e-14 | 70.5 |
Msa0332280 | AT1G19350.6 | 33.692 | 279 | 98 | 13 | 2 | 235 | 96 | 332 | 6.16e-14 | 70.5 |
Msa0332280 | AT1G19350.4 | 33.692 | 279 | 98 | 13 | 2 | 235 | 96 | 332 | 6.16e-14 | 70.5 |
Find 87 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGATCCCAGCAAACCATTC+AGG | 0.319016 | 2_4:+49191610 | None:intergenic |
ATTATCATTATCATCATTGT+AGG | 0.321157 | 2_4:-49191272 | None:intergenic |
TACTCCTTCCTGCCTTCTTC+CGG | 0.325671 | 2_4:-49191664 | Msa0332280:CDS |
AAGGAAGACGAGCCGGGGCT+TGG | 0.330367 | 2_4:+49191937 | None:intergenic |
TCGAAGCCCATTTGCCTTCA+AGG | 0.331246 | 2_4:-49191542 | Msa0332280:CDS |
CATTTGGAAGCAACACATTT+GGG | 0.336623 | 2_4:-49191387 | Msa0332280:CDS |
CTCTCCACAGCTTCATCTTC+AGG | 0.340264 | 2_4:-49191838 | Msa0332280:CDS |
ATGGAGCCACTATGAAAATA+AGG | 0.355143 | 2_4:+49191793 | None:intergenic |
AAATGCAAATTCATCTGAAA+TGG | 0.358381 | 2_4:+49191405 | None:intergenic |
GCATTTGGAAGCAACACATT+TGG | 0.360050 | 2_4:-49191388 | Msa0332280:CDS |
GCATCTTCCTTGAAGGCAAA+TGG | 0.365893 | 2_4:+49191535 | None:intergenic |
ATGTGGACCCCTGGACAGTC+AGG | 0.369643 | 2_4:-49191490 | Msa0332280:CDS |
GCCTTTAGAGAACATGGATA+TGG | 0.373174 | 2_4:-49192001 | None:intergenic |
CTTGGGAAGGAAGACGAGCC+GGG | 0.389874 | 2_4:+49191931 | None:intergenic |
TCTGCACGGCCCGGGTGGAC+TGG | 0.392696 | 2_4:-49191694 | Msa0332280:CDS |
GTTGATCCTGAATGGTTTGC+TGG | 0.393927 | 2_4:-49191616 | Msa0332280:CDS |
ACTATCTGACGGCCAGGGCT+TGG | 0.399313 | 2_4:+49191637 | None:intergenic |
ATTTCAGATGAATTTGCATT+TGG | 0.399618 | 2_4:-49191403 | Msa0332280:CDS |
GAGCTCAGGGGAGGTGTGAC+AGG | 0.403615 | 2_4:+49191763 | None:intergenic |
CATCTGCTACAAATTCTTCA+TGG | 0.405598 | 2_4:+49191335 | None:intergenic |
AAATAAGGATGAGGAAGTTT+CGG | 0.409483 | 2_4:+49191808 | None:intergenic |
CATTTGGGATTGTGAAGCCT+TGG | 0.410546 | 2_4:-49191372 | Msa0332280:CDS |
ACGGCCAGGGCTTGGAGGAC+CGG | 0.427775 | 2_4:+49191645 | None:intergenic |
TCAAAGCCTGCTGCAATAGC+TGG | 0.436153 | 2_4:+49191457 | None:intergenic |
GAACATGCCCCTGACTGTCC+AGG | 0.438349 | 2_4:+49191481 | None:intergenic |
TTCTAGCAGTCGGAGAGCTC+AGG | 0.440476 | 2_4:+49191749 | None:intergenic |
CATCTTCCTTGAAGGCAAAT+GGG | 0.441986 | 2_4:+49191536 | None:intergenic |
TCTGAAATGGCTTCAGACAT+TGG | 0.460873 | 2_4:+49191418 | None:intergenic |
AGATTGAATGTCGGAGAAGT+TGG | 0.467632 | 2_4:+49191571 | None:intergenic |
TGTTCTCCAGCTATTGCAGC+AGG | 0.468934 | 2_4:-49191463 | Msa0332280:CDS |
GGGCTTGGAGGACCGGAAGA+AGG | 0.476639 | 2_4:+49191652 | None:intergenic |
TGGATCCTTTCTCCTTCCCA+AGG | 0.477640 | 2_4:+49191355 | None:intergenic |
CAGGCAGCGGTTCGCGCATG+TGG | 0.479649 | 2_4:-49191507 | Msa0332280:CDS |
GCGTTACGATTTGCAGCGTA+AGG | 0.480138 | 2_4:+49191895 | None:intergenic |
ATGATCAATCTGCACGGCCC+GGG | 0.481435 | 2_4:-49191702 | Msa0332280:CDS |
ATCTGACGGCCAGGGCTTGG+AGG | 0.481702 | 2_4:+49191640 | None:intergenic |
GTCAGATAGTTGATCCTGAA+TGG | 0.488622 | 2_4:-49191624 | Msa0332280:CDS |
TAAGGGGATGATGATGGACT+TGG | 0.490391 | 2_4:+49191913 | None:intergenic |
ATTTGGGATTGTGAAGCCTT+GGG | 0.491602 | 2_4:-49191371 | Msa0332280:CDS |
ACTTGGGAAGGAAGACGAGC+CGG | 0.496049 | 2_4:+49191930 | None:intergenic |
TCTTCCGGTCCTCCAAGCCC+TGG | 0.498896 | 2_4:-49191649 | Msa0332280:CDS |
GATGATCAATCTGCACGGCC+CGG | 0.503778 | 2_4:-49191703 | Msa0332280:CDS |
TTGGAGGACCGGAAGAAGGC+AGG | 0.505728 | 2_4:+49191656 | None:intergenic |
TGAAGCCTTGGGAAGGAGAA+AGG | 0.506728 | 2_4:-49191360 | Msa0332280:CDS |
GGATCAACTATCTGACGGCC+AGG | 0.508622 | 2_4:+49191631 | None:intergenic |
ATGGTAATTCTCTCATTCCA+TGG | 0.516736 | 2_4:-49191870 | Msa0332280:CDS |
AGGTGTGACAGGAGCACTGA+TGG | 0.518748 | 2_4:+49191774 | None:intergenic |
GAGAACATGGATATGGTTGG+TGG | 0.530636 | 2_4:-49191994 | None:intergenic |
CGTTACGATTTGCAGCGTAA+GGG | 0.534170 | 2_4:+49191896 | None:intergenic |
AAGACGAGCCGGGGCTTGGA+TGG | 0.534291 | 2_4:+49191941 | None:intergenic |
GTTACGATTTGCAGCGTAAG+GGG | 0.536907 | 2_4:+49191897 | None:intergenic |
GCTGCAAATCGTAACGCTGA+TGG | 0.540162 | 2_4:-49191889 | Msa0332280:CDS |
TTGGGAAGGAAGACGAGCCG+GGG | 0.553399 | 2_4:+49191932 | None:intergenic |
TCTAGCAGTCGGAGAGCTCA+GGG | 0.554727 | 2_4:+49191750 | None:intergenic |
AACATGCCCCTGACTGTCCA+GGG | 0.556233 | 2_4:+49191482 | None:intergenic |
CCACTATGAAAATAAGGATG+AGG | 0.557357 | 2_4:+49191799 | None:intergenic |
GTAATGTTGTCCAGTCCACC+CGG | 0.557358 | 2_4:+49191684 | None:intergenic |
GGTTCGCGCATGTGGACCCC+TGG | 0.559214 | 2_4:-49191499 | Msa0332280:CDS |
GGATGATGATGGACTTGGGA+AGG | 0.561521 | 2_4:+49191918 | None:intergenic |
TCATCTTACCATCCAAGCCC+CGG | 0.562153 | 2_4:-49191949 | Msa0332280:CDS |
GCAGCGTAAGGGGATGATGA+TGG | 0.565277 | 2_4:+49191907 | None:intergenic |
ATCAATCTGCACGGCCCGGG+TGG | 0.570226 | 2_4:-49191699 | Msa0332280:CDS |
TTGATCCTGAATGGTTTGCT+GGG | 0.572973 | 2_4:-49191615 | Msa0332280:CDS |
TGTGGACCCCTGGACAGTCA+GGG | 0.577345 | 2_4:-49191489 | Msa0332280:CDS |
GGGATTGTGAAGCCTTGGGA+AGG | 0.580106 | 2_4:-49191367 | Msa0332280:CDS |
TTAGAGAACATGGATATGGT+TGG | 0.590409 | 2_4:-49191997 | None:intergenic |
AGGACCGGAAGAAGGCAGGA+AGG | 0.591677 | 2_4:+49191660 | None:intergenic |
GTGGACCCCTGGACAGTCAG+GGG | 0.607774 | 2_4:-49191488 | Msa0332280:CDS |
TGATAATGATAATAAGTACC+TGG | 0.609283 | 2_4:+49191282 | None:intergenic |
CGAGATACAAGATTGAATGT+CGG | 0.609297 | 2_4:+49191562 | None:intergenic |
CTTGGATGGTAAGATGAACA+AGG | 0.613106 | 2_4:+49191955 | None:intergenic |
GATCAACTATCTGACGGCCA+GGG | 0.614613 | 2_4:+49191632 | None:intergenic |
AATCGCGGTGTTCTAGCAGT+CGG | 0.621032 | 2_4:+49191739 | None:intergenic |
CACTTGGTAACTCAAAGACC+AGG | 0.624367 | 2_4:-49191300 | Msa0332280:CDS |
GATGATCTTGAACTCACACT+TGG | 0.629133 | 2_4:-49191316 | Msa0332280:CDS |
AAGGGGATGATGATGGACTT+GGG | 0.629431 | 2_4:+49191914 | None:intergenic |
CTGAAGATGAAGCTGTGGAG+AGG | 0.631008 | 2_4:+49191839 | None:intergenic |
GCAGTCGGAGAGCTCAGGGG+AGG | 0.643740 | 2_4:+49191754 | None:intergenic |
TGATCCTGAAGATGAAGCTG+TGG | 0.648099 | 2_4:+49191834 | None:intergenic |
GGAGAAGTTGGACTAGCATG+TGG | 0.648324 | 2_4:+49191583 | None:intergenic |
TAATGTTGTCCAGTCCACCC+GGG | 0.661081 | 2_4:+49191685 | None:intergenic |
ACATGCCCCTGACTGTCCAG+GGG | 0.666992 | 2_4:+49191483 | None:intergenic |
CTAGCAGTCGGAGAGCTCAG+GGG | 0.684940 | 2_4:+49191751 | None:intergenic |
ATTCAGGATCAACTATCTGA+CGG | 0.695991 | 2_4:+49191626 | None:intergenic |
TTGGATGGTAAGATGAACAA+GGG | 0.701552 | 2_4:+49191956 | None:intergenic |
ACTTCGATGATCAATCTGCA+CGG | 0.712290 | 2_4:-49191708 | Msa0332280:CDS |
TCGAAGTCAGCATTCAATCG+CGG | 0.720698 | 2_4:+49191724 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAATGCAAATTCATCTGAAA+TGG | + | chr2_4:49191859-49191878 | None:intergenic | 25.0% |
! | ATTTCAGATGAATTTGCATT+TGG | - | chr2_4:49191858-49191877 | Msa0332280:CDS | 25.0% |
!! | TGATAATGATAATAAGTACC+TGG | + | chr2_4:49191982-49192001 | None:intergenic | 25.0% |
AAATAAGGATGAGGAAGTTT+CGG | + | chr2_4:49191456-49191475 | None:intergenic | 30.0% | |
TTGGATGGTAAGATGAACAA+GGG | + | chr2_4:49191308-49191327 | None:intergenic | 35.0% | |
ATGGTAATTCTCTCATTCCA+TGG | - | chr2_4:49191391-49191410 | Msa0332280:CDS | 35.0% | |
CCACTATGAAAATAAGGATG+AGG | + | chr2_4:49191465-49191484 | None:intergenic | 35.0% | |
!!! | CCTCATCCTTATTTTCATAG+TGG | - | chr2_4:49191462-49191481 | Msa0332280:CDS | 35.0% |
ATGGAGCCACTATGAAAATA+AGG | + | chr2_4:49191471-49191490 | None:intergenic | 35.0% | |
ATTCAGGATCAACTATCTGA+CGG | + | chr2_4:49191638-49191657 | None:intergenic | 35.0% | |
CGAGATACAAGATTGAATGT+CGG | + | chr2_4:49191702-49191721 | None:intergenic | 35.0% | |
!! | TGAAAAAGCATCTTCCTTGA+AGG | + | chr2_4:49191736-49191755 | None:intergenic | 35.0% |
!!! | TTCAAGGAAGATGCTTTTTC+AGG | - | chr2_4:49191735-49191754 | Msa0332280:CDS | 35.0% |
CATTTGGAAGCAACACATTT+GGG | - | chr2_4:49191874-49191893 | Msa0332280:CDS | 35.0% | |
CATCTGCTACAAATTCTTCA+TGG | + | chr2_4:49191929-49191948 | None:intergenic | 35.0% | |
CTTGGATGGTAAGATGAACA+AGG | + | chr2_4:49191309-49191328 | None:intergenic | 40.0% | |
ACTTCGATGATCAATCTGCA+CGG | - | chr2_4:49191553-49191572 | Msa0332280:CDS | 40.0% | |
GTCAGATAGTTGATCCTGAA+TGG | - | chr2_4:49191637-49191656 | Msa0332280:CDS | 40.0% | |
!! | TTGATCCTGAATGGTTTGCT+GGG | - | chr2_4:49191646-49191665 | Msa0332280:CDS | 40.0% |
AGATTGAATGTCGGAGAAGT+TGG | + | chr2_4:49191693-49191712 | None:intergenic | 40.0% | |
CATCTTCCTTGAAGGCAAAT+GGG | + | chr2_4:49191728-49191747 | None:intergenic | 40.0% | |
! | TCTGAAATGGCTTCAGACAT+TGG | + | chr2_4:49191846-49191865 | None:intergenic | 40.0% |
GCATTTGGAAGCAACACATT+TGG | - | chr2_4:49191873-49191892 | Msa0332280:CDS | 40.0% | |
! | ATTTGGGATTGTGAAGCCTT+GGG | - | chr2_4:49191890-49191909 | Msa0332280:CDS | 40.0% |
GATGATCTTGAACTCACACT+TGG | - | chr2_4:49191945-49191964 | Msa0332280:CDS | 40.0% | |
!! | AAGGGGATGATGATGGACTT+GGG | + | chr2_4:49191350-49191369 | None:intergenic | 45.0% |
!! | TAAGGGGATGATGATGGACT+TGG | + | chr2_4:49191351-49191370 | None:intergenic | 45.0% |
GTTACGATTTGCAGCGTAAG+GGG | + | chr2_4:49191367-49191386 | None:intergenic | 45.0% | |
CGTTACGATTTGCAGCGTAA+GGG | + | chr2_4:49191368-49191387 | None:intergenic | 45.0% | |
TGATCCTGAAGATGAAGCTG+TGG | + | chr2_4:49191430-49191449 | None:intergenic | 45.0% | |
TCGAAGTCAGCATTCAATCG+CGG | + | chr2_4:49191540-49191559 | None:intergenic | 45.0% | |
! | GTTGATCCTGAATGGTTTGC+TGG | - | chr2_4:49191645-49191664 | Msa0332280:CDS | 45.0% |
TTGATCCCAGCAAACCATTC+AGG | + | chr2_4:49191654-49191673 | None:intergenic | 45.0% | |
GCATCTTCCTTGAAGGCAAA+TGG | + | chr2_4:49191729-49191748 | None:intergenic | 45.0% | |
!!! | GAAGATGCTTTTTCAGGCAG+CGG | - | chr2_4:49191741-49191760 | Msa0332280:CDS | 45.0% |
! | CATTTGGGATTGTGAAGCCT+TGG | - | chr2_4:49191889-49191908 | Msa0332280:CDS | 45.0% |
! | CACTTGGTAACTCAAAGACC+AGG | - | chr2_4:49191961-49191980 | Msa0332280:CDS | 45.0% |
TCATCTTACCATCCAAGCCC+CGG | - | chr2_4:49191312-49191331 | Msa0332280:CDS | 50.0% | |
!! | GGATGATGATGGACTTGGGA+AGG | + | chr2_4:49191346-49191365 | None:intergenic | 50.0% |
GCGTTACGATTTGCAGCGTA+AGG | + | chr2_4:49191369-49191388 | None:intergenic | 50.0% | |
GCTGCAAATCGTAACGCTGA+TGG | - | chr2_4:49191372-49191391 | Msa0332280:CDS | 50.0% | |
!! | GTGGAGAGGTTTTTGAGCCA+TGG | + | chr2_4:49191411-49191430 | None:intergenic | 50.0% |
CTGAAGATGAAGCTGTGGAG+AGG | + | chr2_4:49191425-49191444 | None:intergenic | 50.0% | |
CTCTCCACAGCTTCATCTTC+AGG | - | chr2_4:49191423-49191442 | Msa0332280:CDS | 50.0% | |
AATCGCGGTGTTCTAGCAGT+CGG | + | chr2_4:49191525-49191544 | None:intergenic | 50.0% | |
TAATGTTGTCCAGTCCACCC+GGG | + | chr2_4:49191579-49191598 | None:intergenic | 50.0% | |
GTAATGTTGTCCAGTCCACC+CGG | + | chr2_4:49191580-49191599 | None:intergenic | 50.0% | |
TACTCCTTCCTGCCTTCTTC+CGG | - | chr2_4:49191597-49191616 | Msa0332280:CDS | 50.0% | |
GATCAACTATCTGACGGCCA+GGG | + | chr2_4:49191632-49191651 | None:intergenic | 50.0% | |
!! | GGAGAAGTTGGACTAGCATG+TGG | + | chr2_4:49191681-49191700 | None:intergenic | 50.0% |
TCGAAGCCCATTTGCCTTCA+AGG | - | chr2_4:49191719-49191738 | Msa0332280:CDS | 50.0% | |
TGTTCTCCAGCTATTGCAGC+AGG | - | chr2_4:49191798-49191817 | Msa0332280:CDS | 50.0% | |
TCAAAGCCTGCTGCAATAGC+TGG | + | chr2_4:49191807-49191826 | None:intergenic | 50.0% | |
TGAAGCCTTGGGAAGGAGAA+AGG | - | chr2_4:49191901-49191920 | Msa0332280:CDS | 50.0% | |
TGGATCCTTTCTCCTTCCCA+AGG | + | chr2_4:49191909-49191928 | None:intergenic | 50.0% | |
ACTTGGGAAGGAAGACGAGC+CGG | + | chr2_4:49191334-49191353 | None:intergenic | 55.0% | |
GCAGCGTAAGGGGATGATGA+TGG | + | chr2_4:49191357-49191376 | None:intergenic | 55.0% | |
!! | AGGTGTGACAGGAGCACTGA+TGG | + | chr2_4:49191490-49191509 | None:intergenic | 55.0% |
TCTAGCAGTCGGAGAGCTCA+GGG | + | chr2_4:49191514-49191533 | None:intergenic | 55.0% | |
TTCTAGCAGTCGGAGAGCTC+AGG | + | chr2_4:49191515-49191534 | None:intergenic | 55.0% | |
GATGATCAATCTGCACGGCC+CGG | - | chr2_4:49191558-49191577 | Msa0332280:CDS | 55.0% | |
ATGATCAATCTGCACGGCCC+GGG | - | chr2_4:49191559-49191578 | Msa0332280:CDS | 55.0% | |
GGATCAACTATCTGACGGCC+AGG | + | chr2_4:49191633-49191652 | None:intergenic | 55.0% | |
AACATGCCCCTGACTGTCCA+GGG | + | chr2_4:49191782-49191801 | None:intergenic | 55.0% | |
GGGATTGTGAAGCCTTGGGA+AGG | - | chr2_4:49191894-49191913 | Msa0332280:CDS | 55.0% | |
TTGGGAAGGAAGACGAGCCG+GGG | + | chr2_4:49191332-49191351 | None:intergenic | 60.0% | |
CTTGGGAAGGAAGACGAGCC+GGG | + | chr2_4:49191333-49191352 | None:intergenic | 60.0% | |
CTAGCAGTCGGAGAGCTCAG+GGG | + | chr2_4:49191513-49191532 | None:intergenic | 60.0% | |
AGGACCGGAAGAAGGCAGGA+AGG | + | chr2_4:49191604-49191623 | None:intergenic | 60.0% | |
TTGGAGGACCGGAAGAAGGC+AGG | + | chr2_4:49191608-49191627 | None:intergenic | 60.0% | |
ACTATCTGACGGCCAGGGCT+TGG | + | chr2_4:49191627-49191646 | None:intergenic | 60.0% | |
ATGTGGACCCCTGGACAGTC+AGG | - | chr2_4:49191771-49191790 | Msa0332280:CDS | 60.0% | |
TGTGGACCCCTGGACAGTCA+GGG | - | chr2_4:49191772-49191791 | Msa0332280:CDS | 60.0% | |
ACATGCCCCTGACTGTCCAG+GGG | + | chr2_4:49191781-49191800 | None:intergenic | 60.0% | |
GAACATGCCCCTGACTGTCC+AGG | + | chr2_4:49191783-49191802 | None:intergenic | 60.0% | |
AAGACGAGCCGGGGCTTGGA+TGG | + | chr2_4:49191323-49191342 | None:intergenic | 65.0% | |
AAGGAAGACGAGCCGGGGCT+TGG | + | chr2_4:49191327-49191346 | None:intergenic | 65.0% | |
! | GAGCTCAGGGGAGGTGTGAC+AGG | + | chr2_4:49191501-49191520 | None:intergenic | 65.0% |
ATCAATCTGCACGGCCCGGG+TGG | - | chr2_4:49191562-49191581 | Msa0332280:CDS | 65.0% | |
GGGCTTGGAGGACCGGAAGA+AGG | + | chr2_4:49191612-49191631 | None:intergenic | 65.0% | |
TCTTCCGGTCCTCCAAGCCC+TGG | - | chr2_4:49191612-49191631 | Msa0332280:CDS | 65.0% | |
ATCTGACGGCCAGGGCTTGG+AGG | + | chr2_4:49191624-49191643 | None:intergenic | 65.0% | |
GTGGACCCCTGGACAGTCAG+GGG | - | chr2_4:49191773-49191792 | Msa0332280:CDS | 65.0% | |
GCAGTCGGAGAGCTCAGGGG+AGG | + | chr2_4:49191510-49191529 | None:intergenic | 70.0% | |
ACGGCCAGGGCTTGGAGGAC+CGG | + | chr2_4:49191619-49191638 | None:intergenic | 70.0% | |
CAGGCAGCGGTTCGCGCATG+TGG | - | chr2_4:49191754-49191773 | Msa0332280:CDS | 70.0% | |
GGTTCGCGCATGTGGACCCC+TGG | - | chr2_4:49191762-49191781 | Msa0332280:CDS | 70.0% | |
TCTGCACGGCCCGGGTGGAC+TGG | - | chr2_4:49191567-49191586 | Msa0332280:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 49191273 | 49192010 | 49191273 | ID=Msa0332280;Name=Msa0332280 |
chr2_4 | mRNA | 49191273 | 49192010 | 49191273 | ID=Msa0332280-mRNA-1;Parent=Msa0332280;Name=Msa0332280-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|245 |
chr2_4 | exon | 49191273 | 49192010 | 49191273 | ID=Msa0332280-mRNA-1:exon:14761;Parent=Msa0332280-mRNA-1 |
chr2_4 | CDS | 49191273 | 49192010 | 49191273 | ID=Msa0332280-mRNA-1:cds;Parent=Msa0332280-mRNA-1 |
Gene Sequence |
Protein sequence |