AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1188710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188710 MtrunA17_Chr8g0356311 97.816 412 9 0 1 412 1 412 0.0 832
Msa1188710 MtrunA17_Chr2g0309701 65.625 416 121 6 1 412 4 401 0.0 537
Msa1188710 MtrunA17_Chr7g0254941 53.548 155 68 2 5 156 9 162 5.67e-49 169
Msa1188710 MtrunA17_Chr7g0254941 51.807 83 40 0 329 411 231 313 2.92e-22 96.7
Msa1188710 MtrunA17_Chr8g0356911 32.353 170 99 2 3 158 4 171 5.58e-24 100
Msa1188710 MtrunA17_Chr7g0233321 38.000 150 86 4 3 146 74 222 1.52e-23 100
Msa1188710 MtrunA17_Chr1g0175941 35.000 160 98 2 3 156 16 175 5.56e-22 98.6
Msa1188710 MtrunA17_Chr2g0279271 37.584 149 88 3 3 146 116 264 1.15e-20 93.2
Msa1188710 MtrunA17_Chr2g0279251 34.437 151 91 3 3 146 88 237 5.30e-18 85.1
Msa1188710 MtrunA17_Chr4g0050351 34.899 149 91 4 3 146 125 272 1.15e-17 84.3
Msa1188710 MtrunA17_Chr2g0279261 32.450 151 94 5 3 146 110 259 7.18e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188710 AT1G79340.1 66.509 424 124 6 1 412 1 418 0.0 556
Msa1188710 AT1G79330.1 65.714 420 126 6 1 412 1 410 0.0 549
Msa1188710 AT1G79310.1 55.687 422 158 9 1 412 1 403 4.05e-158 452
Msa1188710 AT1G79320.1 57.246 414 129 6 1 412 1 368 1.55e-157 449
Msa1188710 AT1G16420.1 41.570 433 179 10 1 412 1 380 1.07e-97 297
Msa1188710 AT5G04200.1 36.516 419 156 12 1 411 6 322 1.38e-72 231
Msa1188710 AT1G02170.1 38.255 149 86 4 3 146 80 227 1.32e-23 101
Msa1188710 AT4G25110.2 37.162 148 88 3 3 146 116 262 1.17e-22 99.8
Msa1188710 AT4G25110.1 36.913 149 88 4 3 146 116 263 9.71e-22 97.1
Msa1188710 AT5G64240.2 34.228 149 92 3 3 146 90 237 2.56e-18 86.3
Msa1188710 AT5G64240.1 34.228 149 92 3 3 146 90 237 2.71e-18 85.5

Find 122 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGGTTGTTTCAATGATT+TGG 0.268898 8_1:-29258039 None:intergenic
GATATACTTCAGCAGAAAAC+TGG 0.278819 8_1:+29259353 Msa1188710:CDS
GGATCCGGCTTTGGATTATC+AGG 0.289069 8_1:+29259167 Msa1188710:CDS
ATAAGCATTAGCTGCATTTC+CGG 0.302115 8_1:-29259726 None:intergenic
TTCATAAATTTCTTCACTTT+AGG 0.320956 8_1:-29259443 None:intergenic
AGGGGATTTCATGTCCCTTC+AGG 0.322536 8_1:+29259227 Msa1188710:CDS
GGTGGACAAGGTGGGATATT+GGG 0.325642 8_1:+29259503 Msa1188710:CDS
CTGCTGTTTGTTCATTATAG+TGG 0.327931 8_1:+29258328 Msa1188710:CDS
ATGAAGAAACAAATGAAGAT+AGG 0.350793 8_1:+29259273 Msa1188710:CDS
GGAAATGCAGCTAATGCTTA+TGG 0.373990 8_1:+29259728 Msa1188710:CDS
GAACATTCTGGATCCGGCTT+TGG 0.378094 8_1:+29259158 Msa1188710:CDS
AGGTGGACAAGGTGGGATAT+TGG 0.378468 8_1:+29259502 Msa1188710:CDS
TATTAACATAAATATTCCTT+TGG 0.392500 8_1:-29260107 None:intergenic
TCATATCTGTTGGTACAAAC+TGG 0.407851 8_1:+29260171 Msa1188710:three_prime_UTR
AAGGGAGAAGAGGAACATTC+TGG 0.411416 8_1:+29259146 Msa1188710:CDS
TTTCTTCATCCCTGTGTGTA+TGG 0.414592 8_1:-29259259 None:intergenic
GTCGGAGCTGGTCAGATCTT+CGG 0.416923 8_1:+29258294 Msa1188710:CDS
CCCACTTCCGTCTCCATGGC+AGG 0.428897 8_1:-29259596 None:intergenic
GTCGTATGTTAATGTGTGTT+TGG 0.430409 8_1:+29260069 Msa1188710:three_prime_UTR
GACAAGCATCTGCTGAAGTC+TGG 0.432339 8_1:-29259700 None:intergenic
CACCTTCACCACCTCCATGC+TGG 0.437332 8_1:-29259484 None:intergenic
CAAAACAGTGATGTCATCTT+CGG 0.443836 8_1:-29258215 None:intergenic
AGCTTTCAGCAATGCAATAC+AGG 0.451961 8_1:+29259751 Msa1188710:CDS
TATGATTATTAAAATGATAG+TGG 0.457923 8_1:-29260153 None:intergenic
ACTCGTCTTCCTGCTGAAAC+CGG 0.458013 8_1:+29258358 Msa1188710:CDS
TGATGATTTCAAGGAATTTG+TGG 0.462771 8_1:+29259025 Msa1188710:CDS
GACAATGAATGTTGCTCCAA+AGG 0.465866 8_1:+29260091 Msa1188710:three_prime_UTR
TCAGCAGATGCTTGTCCTGC+CGG 0.466394 8_1:+29259707 Msa1188710:CDS
GATTATCAGGCTTTCTGCAT+AGG 0.478422 8_1:+29259180 Msa1188710:CDS
ACCGGAGAGGATGATGATAC+TGG 0.478656 8_1:+29258376 Msa1188710:CDS
CAGATAGGAGAGAGCACAAA+GGG 0.484810 8_1:+29259128 Msa1188710:CDS
GTGAACAGATGATGATTTCA+AGG 0.489198 8_1:+29259016 Msa1188710:intron
GAAGAGGAACATTCTGGATC+CGG 0.491474 8_1:+29259152 Msa1188710:CDS
CGTCTTATGTTCTTTCCTGT+CGG 0.492887 8_1:-29258265 None:intergenic
TGAAGAAACAAATGAAGATA+GGG 0.494506 8_1:+29259274 Msa1188710:CDS
AAAACATATCAGCACAAGAA+AGG 0.502276 8_1:-29259902 None:intergenic
GCCTGCCATGGAGACGGAAG+TGG 0.502627 8_1:+29259595 Msa1188710:CDS
TGATTGACTGTGAAAGTAGA+TGG 0.507406 8_1:-29260259 Msa1188720:three_prime_UTR
CTCATCAGAATCCCACCGCT+TGG 0.508389 8_1:-29259662 None:intergenic
AGGTGGGATATTGGGAATGG+TGG 0.508525 8_1:+29259511 Msa1188710:CDS
TCATCCTCTCCGGTTTCAGC+AGG 0.511272 8_1:-29258367 None:intergenic
TTTCAAGGAATTTGTGGATG+GGG 0.511520 8_1:+29259031 Msa1188710:CDS
GAAGAAGCTAAGGAGCAGAT+AGG 0.515777 8_1:+29259113 Msa1188710:CDS
TCATCGTACACGGAGCCGAC+AGG 0.517561 8_1:+29258250 Msa1188710:CDS
GGTGGTGAAGGTGGACAAGG+TGG 0.521742 8_1:+29259494 Msa1188710:CDS
TCCCACATGGAGTGAAGAAT+AGG 0.524773 8_1:+29259306 Msa1188710:CDS
ACCAGTATCATCATCCTCTC+CGG 0.525146 8_1:-29258377 None:intergenic
CTGCTGAAGTATATCAATGA+GGG 0.525441 8_1:-29259345 None:intergenic
AGAGAGAAGCTACAGAAAGA+TGG 0.525591 8_1:+29259830 Msa1188710:CDS
CTCCAGCATGGAGGTGGTGA+AGG 0.526322 8_1:+29259482 Msa1188710:CDS
ACTTCCCACTTCCGTCTCCA+TGG 0.527397 8_1:-29259600 None:intergenic
GGGAAAGAAAATATAGATGT+TGG 0.529307 8_1:+29259374 Msa1188710:CDS
ATTTCAAGGAATTTGTGGAT+GGG 0.534026 8_1:+29259030 Msa1188710:CDS
CTGGTCAGATCTTCGGAGGA+TGG 0.535257 8_1:+29258301 Msa1188710:CDS
GCATTAGCTGCATTTCCGGC+AGG 0.539676 8_1:-29259722 None:intergenic
GGAGGTGGTGAAGGTGGACA+AGG 0.539731 8_1:+29259491 Msa1188710:CDS
AAATGCTTGATCGAACGTTA+CGG 0.540516 8_1:+29258187 Msa1188710:CDS
AACAAGCTCCAGCATGGAGG+TGG 0.540605 8_1:+29259476 Msa1188710:CDS
AGTAAGCATGAAGTATATGC+TGG 0.543669 8_1:+29259620 Msa1188710:CDS
TGCAATACAGGCTATAATTG+AGG 0.544373 8_1:+29259763 Msa1188710:CDS
TGAGGATGCTATTGAGTCAA+GGG 0.546396 8_1:+29259208 Msa1188710:CDS
CGTCTGTGTGTGTTTCTCCA+TGG 0.546679 8_1:+29260042 Msa1188710:three_prime_UTR
GATTTCAAGGAATTTGTGGA+TGG 0.550385 8_1:+29259029 Msa1188710:CDS
TCTGATATGAATCTCATCAC+TGG 0.553185 8_1:+29258421 Msa1188710:CDS
AAGACGTGTTCTGTCGGAGC+TGG 0.553482 8_1:+29258282 Msa1188710:CDS
TTTGTTCATTATAGTGGACA+TGG 0.555229 8_1:+29258334 Msa1188710:CDS
TGCAAAGCCTGCCATGGAGA+CGG 0.557128 8_1:+29259589 Msa1188710:CDS
AGAGAGCACAAAGGGAGAAG+AGG 0.560245 8_1:+29259136 Msa1188710:CDS
TGATCACTGCAATAGAGTCC+TGG 0.562515 8_1:-29259866 None:intergenic
TTTGTCATTCTATCATGTTG+TGG 0.562645 8_1:-29257995 None:intergenic
ATATACTTCAGCAGAAAACT+GGG 0.563796 8_1:+29259354 Msa1188710:CDS
CAGCATGGAGGTGGTGAAGG+TGG 0.564016 8_1:+29259485 Msa1188710:CDS
GACTGTGAAAGTAGATGGCT+AGG 0.568155 8_1:-29260254 Msa1188720:three_prime_UTR
GATGGATTCACTCAAAAGCC+AGG 0.574901 8_1:+29259848 Msa1188710:CDS
ATGGGGTTCCTAGAGGATGT+AGG 0.576033 8_1:+29259048 Msa1188710:CDS
TGGCTTGATTGAAGAAGCTA+AGG 0.577289 8_1:+29259103 Msa1188710:CDS
ATACTCGGAGCTTATTCTCA+AGG 0.577748 8_1:+29259805 Msa1188710:CDS
GTGGTGAAGGTGGACAAGGT+GGG 0.577935 8_1:+29259495 Msa1188710:CDS
AAGCTGAATGATAATGATGA+GGG 0.577946 8_1:+29259563 Msa1188710:CDS
GGTGGGATATTGGGAATGGT+GGG 0.579754 8_1:+29259512 Msa1188710:CDS
GTGATGAGATTCATATCAGA+AGG 0.580568 8_1:-29258418 None:intergenic
TGATGGTGCAATTACATACT+CGG 0.584306 8_1:+29259790 Msa1188710:CDS
AAAGCTGAATGATAATGATG+AGG 0.590743 8_1:+29259562 Msa1188710:CDS
ATGGTCAGCCTACATCCTCT+AGG 0.591604 8_1:-29259056 None:intergenic
ATCTTGAACAAGCTCCAGCA+TGG 0.591703 8_1:+29259470 Msa1188710:CDS
GGGATATGCAAAGCCTGCCA+TGG 0.591792 8_1:+29259583 Msa1188710:CDS
CTTTCTGCATAGGAAAGTTG+AGG 0.592352 8_1:+29259190 Msa1188710:CDS
AAAGCCTGATAATCCAAAGC+CGG 0.593904 8_1:-29259171 None:intergenic
TTGAGGATGCTATTGAGTCA+AGG 0.594398 8_1:+29259207 Msa1188710:CDS
GACCTATTCTTCACTCCATG+TGG 0.610109 8_1:-29259308 None:intergenic
CCTGCCATGGAGACGGAAGT+GGG 0.610405 8_1:+29259596 Msa1188710:CDS
ACAAGGTGGGATATTGGGAA+TGG 0.615477 8_1:+29259508 Msa1188710:CDS
GAACATAAGACGTGTTCTGT+CGG 0.616617 8_1:+29258276 Msa1188710:CDS
TTGTTCATTATAGTGGACAT+GGG 0.616864 8_1:+29258335 Msa1188710:CDS
TCTGCTGAAGTATATCAATG+AGG 0.620784 8_1:-29259346 None:intergenic
ATATCAATGAGGGTTGAAAG+TGG 0.625536 8_1:-29259335 None:intergenic
TCTGATTCATGCCACAGTGG+TGG 0.633718 8_1:+29259083 Msa1188710:CDS
GATTGCGTCGCCATACACAC+AGG 0.633924 8_1:+29259249 Msa1188710:CDS
TATGGCGACGCAATCCTGAA+GGG 0.638425 8_1:-29259241 None:intergenic
GCAGATAGGAGAGAGCACAA+AGG 0.640959 8_1:+29259127 Msa1188710:CDS
ACCTATTCTTCACTCCATGT+GGG 0.644192 8_1:-29259307 None:intergenic
GTGGCATGAATCAGATACAA+TGG 0.644776 8_1:-29259075 None:intergenic
ATATAGATGTTGGTCAACTG+AGG 0.645754 8_1:+29259384 Msa1188710:CDS
GCTATAATTGAGGAGACTGA+TGG 0.648617 8_1:+29259773 Msa1188710:CDS
GGAGCTGGTCAGATCTTCGG+AGG 0.651252 8_1:+29258297 Msa1188710:CDS
TTTGTGGATGGGGTTCCTAG+AGG 0.655242 8_1:+29259041 Msa1188710:CDS
GAGGATGCTATTGAGTCAAG+GGG 0.661263 8_1:+29259209 Msa1188710:CDS
ATTAACATACGACTATACCA+TGG 0.661282 8_1:-29260059 None:intergenic
GGAACAAAAGCAGAGTTACG+AGG 0.662090 8_1:+29258136 Msa1188710:CDS
AGCGGTGGGATTCTGATGAG+TGG 0.665248 8_1:+29259665 Msa1188710:CDS
AGGGATATCGAACTCCCACA+TGG 0.666782 8_1:+29259293 Msa1188710:CDS
TTGATCGGAATCAACTACCC+AGG 0.668541 8_1:+29258115 Msa1188710:CDS
ATTGCGTCGCCATACACACA+GGG 0.681076 8_1:+29259250 Msa1188710:CDS
CATGGAGAAACACACACAGA+CGG 0.685044 8_1:-29260041 None:intergenic
CGACACGGATTCATCGTACA+CGG 0.691286 8_1:+29258240 Msa1188710:CDS
TCTTCCTGCTGAAACCGGAG+AGG 0.694590 8_1:+29258363 Msa1188710:CDS
TCAAAGCGCGGTCTTCCAAG+CGG 0.707343 8_1:+29259647 Msa1188710:CDS
ACAAGAAAGGATCATCAACA+TGG 0.709272 8_1:-29259889 None:intergenic
TTGAACAAGCTCCAGCATGG+AGG 0.724624 8_1:+29259473 Msa1188710:CDS
TATGCTGGATCGTCAAAGCG+CGG 0.728471 8_1:+29259635 Msa1188710:CDS
CTTCAATCAAGCCACCACTG+TGG 0.744555 8_1:-29259094 None:intergenic
GTATCTGATTCATGCCACAG+TGG 0.772525 8_1:+29259080 Msa1188710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTACTATTTTTTAG+AGG - chr8_1:29260200-29260219 Msa1188720:three_prime_UTR 10.0%
!!! TTTTTTTTACTATTTTTTAG+AGG - chr8_1:29260200-29260219 Msa1188720:three_prime_UTR 10.0%
!!! AATGTTTAATTTTGTGATTT+TGG + chr8_1:29258540-29258559 Msa1188710:intron 15.0%
!! TTTAGTATACATGAATATAA+AGG + chr8_1:29258832-29258851 Msa1188710:intron 15.0%
!! TATTAACATAAATATTCCTT+TGG - chr8_1:29260110-29260129 None:intergenic 15.0%
!! TATGATTATTAAAATGATAG+TGG - chr8_1:29260156-29260175 None:intergenic 15.0%
!!! ATTTTAATAATCATATCTGT+TGG + chr8_1:29260161-29260180 Msa1188710:three_prime_UTR 15.0%
!! AAAAAAAAAAAAAATCAGAC+TGG + chr8_1:29260217-29260236 Msa1188710:three_prime_UTR 15.0%
!!! AATGTTTAATTTTGTGATTT+TGG + chr8_1:29258540-29258559 Msa1188710:intron 15.0%
!! TTTAGTATACATGAATATAA+AGG + chr8_1:29258832-29258851 Msa1188710:intron 15.0%
!! TATTAACATAAATATTCCTT+TGG - chr8_1:29260110-29260129 None:intergenic 15.0%
!! TATGATTATTAAAATGATAG+TGG - chr8_1:29260156-29260175 None:intergenic 15.0%
!!! ATTTTAATAATCATATCTGT+TGG + chr8_1:29260161-29260180 Msa1188710:three_prime_UTR 15.0%
!! AAAAAAAAAAAAAATCAGAC+TGG + chr8_1:29260217-29260236 Msa1188710:three_prime_UTR 15.0%
!!! AGAGTAGTTTTTTTTTTTCT+TGG - chr8_1:29258453-29258472 None:intergenic 20.0%
!! AGAGAAAAAGGTAAATAAAA+AGG - chr8_1:29258476-29258495 None:intergenic 20.0%
!! AAATAAAAACAGAGAGAAAA+AGG - chr8_1:29258488-29258507 None:intergenic 20.0%
!!! TTTGATTTGATTTGATGATA+AGG + chr8_1:29258654-29258673 Msa1188710:intron 20.0%
!! TTCATAAATTTCTTCACTTT+AGG - chr8_1:29259446-29259465 None:intergenic 20.0%
!! TCATTCAAAAAGAGAATAAT+GGG + chr8_1:29259929-29259948 Msa1188710:three_prime_UTR 20.0%
!!! AGAGTAGTTTTTTTTTTTCT+TGG - chr8_1:29258453-29258472 None:intergenic 20.0%
!! AGAGAAAAAGGTAAATAAAA+AGG - chr8_1:29258476-29258495 None:intergenic 20.0%
!! AAATAAAAACAGAGAGAAAA+AGG - chr8_1:29258488-29258507 None:intergenic 20.0%
!!! TTTGATTTGATTTGATGATA+AGG + chr8_1:29258654-29258673 Msa1188710:intron 20.0%
!! TTCATAAATTTCTTCACTTT+AGG - chr8_1:29259446-29259465 None:intergenic 20.0%
!! TCATTCAAAAAGAGAATAAT+GGG + chr8_1:29259929-29259948 Msa1188710:three_prime_UTR 20.0%
!! AAAAGGTTGTTTCAATGATT+TGG - chr8_1:29258042-29258061 None:intergenic 25.0%
! GAAGATGAAGAAAAAGAAAA+AGG - chr8_1:29258059-29258078 None:intergenic 25.0%
! CTCAATTAAAATTCGAACAT+TGG - chr8_1:29258802-29258821 None:intergenic 25.0%
! ATGAATATAAAGGAACAGAA+GGG + chr8_1:29258842-29258861 Msa1188710:intron 25.0%
!! ATGTCTGGAATCTTTATATA+GGG + chr8_1:29258924-29258943 Msa1188710:intron 25.0%
! ATGTTATTAGTGAGTAGTAA+TGG + chr8_1:29258955-29258974 Msa1188710:intron 25.0%
! ATGAAGAAACAAATGAAGAT+AGG + chr8_1:29259273-29259292 Msa1188710:CDS 25.0%
! TGAAGAAACAAATGAAGATA+GGG + chr8_1:29259274-29259293 Msa1188710:CDS 25.0%
!!! CTACACTTTTTGATGTTTTT+GGG + chr8_1:29259408-29259427 Msa1188710:CDS 25.0%
!!! TACACTTTTTGATGTTTTTG+GGG + chr8_1:29259409-29259428 Msa1188710:CDS 25.0%
! CTCATTCAAAAAGAGAATAA+TGG + chr8_1:29259928-29259947 Msa1188710:three_prime_UTR 25.0%
!! AAAAGGTTGTTTCAATGATT+TGG - chr8_1:29258042-29258061 None:intergenic 25.0%
! GAAGATGAAGAAAAAGAAAA+AGG - chr8_1:29258059-29258078 None:intergenic 25.0%
! CTCAATTAAAATTCGAACAT+TGG - chr8_1:29258802-29258821 None:intergenic 25.0%
! ATGAATATAAAGGAACAGAA+GGG + chr8_1:29258842-29258861 Msa1188710:intron 25.0%
!! ATGTCTGGAATCTTTATATA+GGG + chr8_1:29258924-29258943 Msa1188710:intron 25.0%
! ATGTTATTAGTGAGTAGTAA+TGG + chr8_1:29258955-29258974 Msa1188710:intron 25.0%
! ATGAAGAAACAAATGAAGAT+AGG + chr8_1:29259273-29259292 Msa1188710:CDS 25.0%
! TGAAGAAACAAATGAAGATA+GGG + chr8_1:29259274-29259293 Msa1188710:CDS 25.0%
!!! CTACACTTTTTGATGTTTTT+GGG + chr8_1:29259408-29259427 Msa1188710:CDS 25.0%
!!! TACACTTTTTGATGTTTTTG+GGG + chr8_1:29259409-29259428 Msa1188710:CDS 25.0%
! CTCATTCAAAAAGAGAATAA+TGG + chr8_1:29259928-29259947 Msa1188710:three_prime_UTR 25.0%
! ACGAAAAAAGCTGTATTGAT+CGG + chr8_1:29258100-29258119 Msa1188710:CDS 30.0%
!! TTTGTTCATTATAGTGGACA+TGG + chr8_1:29258334-29258353 Msa1188710:CDS 30.0%
!! TTGTTCATTATAGTGGACAT+GGG + chr8_1:29258335-29258354 Msa1188710:CDS 30.0%
!! TAAAATTCGAACATTGGTTC+CGG - chr8_1:29258796-29258815 None:intergenic 30.0%
CATGAATATAAAGGAACAGA+AGG + chr8_1:29258841-29258860 Msa1188710:intron 30.0%
! CATGTCTGGAATCTTTATAT+AGG + chr8_1:29258923-29258942 Msa1188710:intron 30.0%
TGATGATTTCAAGGAATTTG+TGG + chr8_1:29259025-29259044 Msa1188710:CDS 30.0%
ATTTCAAGGAATTTGTGGAT+GGG + chr8_1:29259030-29259049 Msa1188710:CDS 30.0%
ATATACTTCAGCAGAAAACT+GGG + chr8_1:29259354-29259373 Msa1188710:CDS 30.0%
GGGAAAGAAAATATAGATGT+TGG + chr8_1:29259374-29259393 Msa1188710:CDS 30.0%
! CCAAAAACATCAAAAAGTGT+AGG - chr8_1:29259410-29259429 None:intergenic 30.0%
!! CCTACACTTTTTGATGTTTT+TGG + chr8_1:29259407-29259426 Msa1188710:CDS 30.0%
! CTTTTGCTTAAGAAACTCTT+GGG - chr8_1:29259546-29259565 None:intergenic 30.0%
! AAAGCTGAATGATAATGATG+AGG + chr8_1:29259562-29259581 Msa1188710:CDS 30.0%
! AAGCTGAATGATAATGATGA+GGG + chr8_1:29259563-29259582 Msa1188710:CDS 30.0%
AAAACATATCAGCACAAGAA+AGG - chr8_1:29259905-29259924 None:intergenic 30.0%
! TTTTGTAACAAACTTGACGA+TGG + chr8_1:29259998-29260017 Msa1188710:three_prime_UTR 30.0%
ATTAACATACGACTATACCA+TGG - chr8_1:29260062-29260081 None:intergenic 30.0%
! ACGAAAAAAGCTGTATTGAT+CGG + chr8_1:29258100-29258119 Msa1188710:CDS 30.0%
!! TTTGTTCATTATAGTGGACA+TGG + chr8_1:29258334-29258353 Msa1188710:CDS 30.0%
!! TTGTTCATTATAGTGGACAT+GGG + chr8_1:29258335-29258354 Msa1188710:CDS 30.0%
!! TAAAATTCGAACATTGGTTC+CGG - chr8_1:29258796-29258815 None:intergenic 30.0%
CATGAATATAAAGGAACAGA+AGG + chr8_1:29258841-29258860 Msa1188710:intron 30.0%
! CATGTCTGGAATCTTTATAT+AGG + chr8_1:29258923-29258942 Msa1188710:intron 30.0%
TGATGATTTCAAGGAATTTG+TGG + chr8_1:29259025-29259044 Msa1188710:CDS 30.0%
ATTTCAAGGAATTTGTGGAT+GGG + chr8_1:29259030-29259049 Msa1188710:CDS 30.0%
ATATACTTCAGCAGAAAACT+GGG + chr8_1:29259354-29259373 Msa1188710:CDS 30.0%
GGGAAAGAAAATATAGATGT+TGG + chr8_1:29259374-29259393 Msa1188710:CDS 30.0%
! CCAAAAACATCAAAAAGTGT+AGG - chr8_1:29259410-29259429 None:intergenic 30.0%
!! CCTACACTTTTTGATGTTTT+TGG + chr8_1:29259407-29259426 Msa1188710:CDS 30.0%
! CTTTTGCTTAAGAAACTCTT+GGG - chr8_1:29259546-29259565 None:intergenic 30.0%
! AAAGCTGAATGATAATGATG+AGG + chr8_1:29259562-29259581 Msa1188710:CDS 30.0%
! AAGCTGAATGATAATGATGA+GGG + chr8_1:29259563-29259582 Msa1188710:CDS 30.0%
AAAACATATCAGCACAAGAA+AGG - chr8_1:29259905-29259924 None:intergenic 30.0%
! TTTTGTAACAAACTTGACGA+TGG + chr8_1:29259998-29260017 Msa1188710:three_prime_UTR 30.0%
ATTAACATACGACTATACCA+TGG - chr8_1:29260062-29260081 None:intergenic 30.0%
!!! ACAGCTTTTTTCGTCATTGT+TGG - chr8_1:29258094-29258113 None:intergenic 35.0%
AAATGCTTGATCGAACGTTA+CGG + chr8_1:29258187-29258206 Msa1188710:CDS 35.0%
CAAAACAGTGATGTCATCTT+CGG - chr8_1:29258218-29258237 None:intergenic 35.0%
! CTGCTGTTTGTTCATTATAG+TGG + chr8_1:29258328-29258347 Msa1188710:CDS 35.0%
GTGATGAGATTCATATCAGA+AGG - chr8_1:29258421-29258440 None:intergenic 35.0%
TCTGATATGAATCTCATCAC+TGG + chr8_1:29258421-29258440 Msa1188710:CDS 35.0%
! TTTTGTGATTTTGGATCCTG+TGG + chr8_1:29258549-29258568 Msa1188710:intron 35.0%
! TTTGATGATAAGGAATCTCC+AGG + chr8_1:29258664-29258683 Msa1188710:intron 35.0%
! TTGATGATAAGGAATCTCCA+GGG + chr8_1:29258665-29258684 Msa1188710:intron 35.0%
AGTTAAGATTGTCTCCATAG+TGG + chr8_1:29258747-29258766 Msa1188710:intron 35.0%
GTGAACAGATGATGATTTCA+AGG + chr8_1:29259016-29259035 Msa1188710:intron 35.0%
GATTTCAAGGAATTTGTGGA+TGG + chr8_1:29259029-29259048 Msa1188710:CDS 35.0%
TTTCAAGGAATTTGTGGATG+GGG + chr8_1:29259031-29259050 Msa1188710:CDS 35.0%
ATATCAATGAGGGTTGAAAG+TGG - chr8_1:29259338-29259357 None:intergenic 35.0%
CTGCTGAAGTATATCAATGA+GGG - chr8_1:29259348-29259367 None:intergenic 35.0%
TCTGCTGAAGTATATCAATG+AGG - chr8_1:29259349-29259368 None:intergenic 35.0%
GATATACTTCAGCAGAAAAC+TGG + chr8_1:29259353-29259372 Msa1188710:CDS 35.0%
ATATAGATGTTGGTCAACTG+AGG + chr8_1:29259384-29259403 Msa1188710:CDS 35.0%
! GCTTTTGCTTAAGAAACTCT+TGG - chr8_1:29259547-29259566 None:intergenic 35.0%
AGTAAGCATGAAGTATATGC+TGG + chr8_1:29259620-29259639 Msa1188710:CDS 35.0%
ATAAGCATTAGCTGCATTTC+CGG - chr8_1:29259729-29259748 None:intergenic 35.0%
TGCAATACAGGCTATAATTG+AGG + chr8_1:29259763-29259782 Msa1188710:CDS 35.0%
! TGATGGTGCAATTACATACT+CGG + chr8_1:29259790-29259809 Msa1188710:CDS 35.0%
ACAAGAAAGGATCATCAACA+TGG - chr8_1:29259892-29259911 None:intergenic 35.0%
GTCGTATGTTAATGTGTGTT+TGG + chr8_1:29260069-29260088 Msa1188710:three_prime_UTR 35.0%
TCATATCTGTTGGTACAAAC+TGG + chr8_1:29260171-29260190 Msa1188710:three_prime_UTR 35.0%
!!! ACAGCTTTTTTCGTCATTGT+TGG - chr8_1:29258094-29258113 None:intergenic 35.0%
AAATGCTTGATCGAACGTTA+CGG + chr8_1:29258187-29258206 Msa1188710:CDS 35.0%
CAAAACAGTGATGTCATCTT+CGG - chr8_1:29258218-29258237 None:intergenic 35.0%
! CTGCTGTTTGTTCATTATAG+TGG + chr8_1:29258328-29258347 Msa1188710:CDS 35.0%
GTGATGAGATTCATATCAGA+AGG - chr8_1:29258421-29258440 None:intergenic 35.0%
TCTGATATGAATCTCATCAC+TGG + chr8_1:29258421-29258440 Msa1188710:CDS 35.0%
! TTTTGTGATTTTGGATCCTG+TGG + chr8_1:29258549-29258568 Msa1188710:intron 35.0%
! TTTGATGATAAGGAATCTCC+AGG + chr8_1:29258664-29258683 Msa1188710:intron 35.0%
! TTGATGATAAGGAATCTCCA+GGG + chr8_1:29258665-29258684 Msa1188710:intron 35.0%
AGTTAAGATTGTCTCCATAG+TGG + chr8_1:29258747-29258766 Msa1188710:intron 35.0%
GTGAACAGATGATGATTTCA+AGG + chr8_1:29259016-29259035 Msa1188710:intron 35.0%
GATTTCAAGGAATTTGTGGA+TGG + chr8_1:29259029-29259048 Msa1188710:CDS 35.0%
TTTCAAGGAATTTGTGGATG+GGG + chr8_1:29259031-29259050 Msa1188710:CDS 35.0%
ATATCAATGAGGGTTGAAAG+TGG - chr8_1:29259338-29259357 None:intergenic 35.0%
CTGCTGAAGTATATCAATGA+GGG - chr8_1:29259348-29259367 None:intergenic 35.0%
TCTGCTGAAGTATATCAATG+AGG - chr8_1:29259349-29259368 None:intergenic 35.0%
GATATACTTCAGCAGAAAAC+TGG + chr8_1:29259353-29259372 Msa1188710:CDS 35.0%
ATATAGATGTTGGTCAACTG+AGG + chr8_1:29259384-29259403 Msa1188710:CDS 35.0%
! GCTTTTGCTTAAGAAACTCT+TGG - chr8_1:29259547-29259566 None:intergenic 35.0%
AGTAAGCATGAAGTATATGC+TGG + chr8_1:29259620-29259639 Msa1188710:CDS 35.0%
ATAAGCATTAGCTGCATTTC+CGG - chr8_1:29259729-29259748 None:intergenic 35.0%
TGCAATACAGGCTATAATTG+AGG + chr8_1:29259763-29259782 Msa1188710:CDS 35.0%
! TGATGGTGCAATTACATACT+CGG + chr8_1:29259790-29259809 Msa1188710:CDS 35.0%
ACAAGAAAGGATCATCAACA+TGG - chr8_1:29259892-29259911 None:intergenic 35.0%
GTCGTATGTTAATGTGTGTT+TGG + chr8_1:29260069-29260088 Msa1188710:three_prime_UTR 35.0%
TCATATCTGTTGGTACAAAC+TGG + chr8_1:29260171-29260190 Msa1188710:three_prime_UTR 35.0%
!!! GCTTTTTTCGTCATTGTTGG+TGG - chr8_1:29258091-29258110 None:intergenic 40.0%
!! GTAACTCTGCTTTTGTTCCT+GGG - chr8_1:29258135-29258154 None:intergenic 40.0%
!!! CATCACTGTTTTGATCGACA+CGG + chr8_1:29258225-29258244 Msa1188710:CDS 40.0%
CGTCTTATGTTCTTTCCTGT+CGG - chr8_1:29258268-29258287 None:intergenic 40.0%
GAACATAAGACGTGTTCTGT+CGG + chr8_1:29258276-29258295 Msa1188710:CDS 40.0%
GTGGCATGAATCAGATACAA+TGG - chr8_1:29259078-29259097 None:intergenic 40.0%
TGGCTTGATTGAAGAAGCTA+AGG + chr8_1:29259103-29259122 Msa1188710:CDS 40.0%
AAAGCCTGATAATCCAAAGC+CGG - chr8_1:29259174-29259193 None:intergenic 40.0%
GATTATCAGGCTTTCTGCAT+AGG + chr8_1:29259180-29259199 Msa1188710:CDS 40.0%
CTTTCTGCATAGGAAAGTTG+AGG + chr8_1:29259190-29259209 Msa1188710:CDS 40.0%
TTGAGGATGCTATTGAGTCA+AGG + chr8_1:29259207-29259226 Msa1188710:CDS 40.0%
TGAGGATGCTATTGAGTCAA+GGG + chr8_1:29259208-29259227 Msa1188710:CDS 40.0%
TTTCTTCATCCCTGTGTGTA+TGG - chr8_1:29259262-29259281 None:intergenic 40.0%
ACCTATTCTTCACTCCATGT+GGG - chr8_1:29259310-29259329 None:intergenic 40.0%
GGAAATGCAGCTAATGCTTA+TGG + chr8_1:29259728-29259747 Msa1188710:CDS 40.0%
AGCTTTCAGCAATGCAATAC+AGG + chr8_1:29259751-29259770 Msa1188710:CDS 40.0%
GCTATAATTGAGGAGACTGA+TGG + chr8_1:29259773-29259792 Msa1188710:CDS 40.0%
ATACTCGGAGCTTATTCTCA+AGG + chr8_1:29259805-29259824 Msa1188710:CDS 40.0%
AGAGAGAAGCTACAGAAAGA+TGG + chr8_1:29259830-29259849 Msa1188710:CDS 40.0%
GACAATGAATGTTGCTCCAA+AGG + chr8_1:29260091-29260110 Msa1188710:three_prime_UTR 40.0%
!!! GCTTTTTTCGTCATTGTTGG+TGG - chr8_1:29258091-29258110 None:intergenic 40.0%
!! GTAACTCTGCTTTTGTTCCT+GGG - chr8_1:29258135-29258154 None:intergenic 40.0%
!!! CATCACTGTTTTGATCGACA+CGG + chr8_1:29258225-29258244 Msa1188710:CDS 40.0%
CGTCTTATGTTCTTTCCTGT+CGG - chr8_1:29258268-29258287 None:intergenic 40.0%
GAACATAAGACGTGTTCTGT+CGG + chr8_1:29258276-29258295 Msa1188710:CDS 40.0%
GTGGCATGAATCAGATACAA+TGG - chr8_1:29259078-29259097 None:intergenic 40.0%
TGGCTTGATTGAAGAAGCTA+AGG + chr8_1:29259103-29259122 Msa1188710:CDS 40.0%
AAAGCCTGATAATCCAAAGC+CGG - chr8_1:29259174-29259193 None:intergenic 40.0%
GATTATCAGGCTTTCTGCAT+AGG + chr8_1:29259180-29259199 Msa1188710:CDS 40.0%
CTTTCTGCATAGGAAAGTTG+AGG + chr8_1:29259190-29259209 Msa1188710:CDS 40.0%
TTGAGGATGCTATTGAGTCA+AGG + chr8_1:29259207-29259226 Msa1188710:CDS 40.0%
TGAGGATGCTATTGAGTCAA+GGG + chr8_1:29259208-29259227 Msa1188710:CDS 40.0%
TTTCTTCATCCCTGTGTGTA+TGG - chr8_1:29259262-29259281 None:intergenic 40.0%
ACCTATTCTTCACTCCATGT+GGG - chr8_1:29259310-29259329 None:intergenic 40.0%
GGAAATGCAGCTAATGCTTA+TGG + chr8_1:29259728-29259747 Msa1188710:CDS 40.0%
AGCTTTCAGCAATGCAATAC+AGG + chr8_1:29259751-29259770 Msa1188710:CDS 40.0%
GCTATAATTGAGGAGACTGA+TGG + chr8_1:29259773-29259792 Msa1188710:CDS 40.0%
ATACTCGGAGCTTATTCTCA+AGG + chr8_1:29259805-29259824 Msa1188710:CDS 40.0%
AGAGAGAAGCTACAGAAAGA+TGG + chr8_1:29259830-29259849 Msa1188710:CDS 40.0%
GACAATGAATGTTGCTCCAA+AGG + chr8_1:29260091-29260110 Msa1188710:three_prime_UTR 40.0%
TTGATCGGAATCAACTACCC+AGG + chr8_1:29258115-29258134 Msa1188710:CDS 45.0%
!! CGTAACTCTGCTTTTGTTCC+TGG - chr8_1:29258136-29258155 None:intergenic 45.0%
GGAACAAAAGCAGAGTTACG+AGG + chr8_1:29258136-29258155 Msa1188710:CDS 45.0%
ACCAGTATCATCATCCTCTC+CGG - chr8_1:29258380-29258399 None:intergenic 45.0%
CAACTTTCAGCTGTAACCAC+AGG - chr8_1:29258568-29258587 None:intergenic 45.0%
TGATAAGGAATCTCCAGGGA+CGG + chr8_1:29258669-29258688 Msa1188710:intron 45.0%
! GTCTCCATAGTGGAATTGAC+CGG + chr8_1:29258757-29258776 Msa1188710:intron 45.0%
GATTCCGGTCAATTCCACTA+TGG - chr8_1:29258764-29258783 None:intergenic 45.0%
!! AATTCGAACATTGGTTCCGG+AGG - chr8_1:29258793-29258812 None:intergenic 45.0%
TTTGTAGTCTCGTGCATGTC+TGG + chr8_1:29258909-29258928 Msa1188710:intron 45.0%
GTATCTGATTCATGCCACAG+TGG + chr8_1:29259080-29259099 Msa1188710:CDS 45.0%
GAAGAAGCTAAGGAGCAGAT+AGG + chr8_1:29259113-29259132 Msa1188710:CDS 45.0%
! CAGATAGGAGAGAGCACAAA+GGG + chr8_1:29259128-29259147 Msa1188710:CDS 45.0%
AAGGGAGAAGAGGAACATTC+TGG + chr8_1:29259146-29259165 Msa1188710:CDS 45.0%
GAAGAGGAACATTCTGGATC+CGG + chr8_1:29259152-29259171 Msa1188710:CDS 45.0%
GAGGATGCTATTGAGTCAAG+GGG + chr8_1:29259209-29259228 Msa1188710:CDS 45.0%
TCCCACATGGAGTGAAGAAT+AGG + chr8_1:29259306-29259325 Msa1188710:CDS 45.0%
GACCTATTCTTCACTCCATG+TGG - chr8_1:29259311-29259330 None:intergenic 45.0%
ATCTTGAACAAGCTCCAGCA+TGG + chr8_1:29259470-29259489 Msa1188710:CDS 45.0%
ACAAGGTGGGATATTGGGAA+TGG + chr8_1:29259508-29259527 Msa1188710:CDS 45.0%
! GATGGATTCACTCAAAAGCC+AGG + chr8_1:29259848-29259867 Msa1188710:CDS 45.0%
TGATCACTGCAATAGAGTCC+TGG - chr8_1:29259869-29259888 None:intergenic 45.0%
CATGGAGAAACACACACAGA+CGG - chr8_1:29260044-29260063 None:intergenic 45.0%
GACTGTGAAAGTAGATGGCT+AGG - chr8_1:29260257-29260276 Msa1188720:three_prime_UTR 45.0%
TTGATCGGAATCAACTACCC+AGG + chr8_1:29258115-29258134 Msa1188710:CDS 45.0%
!! CGTAACTCTGCTTTTGTTCC+TGG - chr8_1:29258136-29258155 None:intergenic 45.0%
GGAACAAAAGCAGAGTTACG+AGG + chr8_1:29258136-29258155 Msa1188710:CDS 45.0%
ACCAGTATCATCATCCTCTC+CGG - chr8_1:29258380-29258399 None:intergenic 45.0%
CAACTTTCAGCTGTAACCAC+AGG - chr8_1:29258568-29258587 None:intergenic 45.0%
TGATAAGGAATCTCCAGGGA+CGG + chr8_1:29258669-29258688 Msa1188710:intron 45.0%
! GTCTCCATAGTGGAATTGAC+CGG + chr8_1:29258757-29258776 Msa1188710:intron 45.0%
GATTCCGGTCAATTCCACTA+TGG - chr8_1:29258764-29258783 None:intergenic 45.0%
!! AATTCGAACATTGGTTCCGG+AGG - chr8_1:29258793-29258812 None:intergenic 45.0%
TTTGTAGTCTCGTGCATGTC+TGG + chr8_1:29258909-29258928 Msa1188710:intron 45.0%
GTATCTGATTCATGCCACAG+TGG + chr8_1:29259080-29259099 Msa1188710:CDS 45.0%
GAAGAAGCTAAGGAGCAGAT+AGG + chr8_1:29259113-29259132 Msa1188710:CDS 45.0%
! CAGATAGGAGAGAGCACAAA+GGG + chr8_1:29259128-29259147 Msa1188710:CDS 45.0%
AAGGGAGAAGAGGAACATTC+TGG + chr8_1:29259146-29259165 Msa1188710:CDS 45.0%
GAAGAGGAACATTCTGGATC+CGG + chr8_1:29259152-29259171 Msa1188710:CDS 45.0%
GAGGATGCTATTGAGTCAAG+GGG + chr8_1:29259209-29259228 Msa1188710:CDS 45.0%
TCCCACATGGAGTGAAGAAT+AGG + chr8_1:29259306-29259325 Msa1188710:CDS 45.0%
GACCTATTCTTCACTCCATG+TGG - chr8_1:29259311-29259330 None:intergenic 45.0%
ATCTTGAACAAGCTCCAGCA+TGG + chr8_1:29259470-29259489 Msa1188710:CDS 45.0%
ACAAGGTGGGATATTGGGAA+TGG + chr8_1:29259508-29259527 Msa1188710:CDS 45.0%
! GATGGATTCACTCAAAAGCC+AGG + chr8_1:29259848-29259867 Msa1188710:CDS 45.0%
TGATCACTGCAATAGAGTCC+TGG - chr8_1:29259869-29259888 None:intergenic 45.0%
CATGGAGAAACACACACAGA+CGG - chr8_1:29260044-29260063 None:intergenic 45.0%
GACTGTGAAAGTAGATGGCT+AGG - chr8_1:29260257-29260276 Msa1188720:three_prime_UTR 45.0%
CGACACGGATTCATCGTACA+CGG + chr8_1:29258240-29258259 Msa1188710:CDS 50.0%
ACTCGTCTTCCTGCTGAAAC+CGG + chr8_1:29258358-29258377 Msa1188710:CDS 50.0%
ACCGGAGAGGATGATGATAC+TGG + chr8_1:29258376-29258395 Msa1188710:CDS 50.0%
CTTGTAGAGAATTCCGTCCC+TGG - chr8_1:29258685-29258704 None:intergenic 50.0%
TTCCGGAGGTTGTGAGATTC+CGG - chr8_1:29258779-29258798 None:intergenic 50.0%
AAGGAACAGAAGGGAACGTG+TGG + chr8_1:29258851-29258870 Msa1188710:intron 50.0%
TTTGTGGATGGGGTTCCTAG+AGG + chr8_1:29259041-29259060 Msa1188710:CDS 50.0%
ATGGGGTTCCTAGAGGATGT+AGG + chr8_1:29259048-29259067 Msa1188710:CDS 50.0%
ATGGTCAGCCTACATCCTCT+AGG - chr8_1:29259059-29259078 None:intergenic 50.0%
TCTGATTCATGCCACAGTGG+TGG + chr8_1:29259083-29259102 Msa1188710:CDS 50.0%
CTTCAATCAAGCCACCACTG+TGG - chr8_1:29259097-29259116 None:intergenic 50.0%
! GCAGATAGGAGAGAGCACAA+AGG + chr8_1:29259127-29259146 Msa1188710:CDS 50.0%
! AGAGAGCACAAAGGGAGAAG+AGG + chr8_1:29259136-29259155 Msa1188710:CDS 50.0%
GAACATTCTGGATCCGGCTT+TGG + chr8_1:29259158-29259177 Msa1188710:CDS 50.0%
!! GGATCCGGCTTTGGATTATC+AGG + chr8_1:29259167-29259186 Msa1188710:CDS 50.0%
AGGGGATTTCATGTCCCTTC+AGG + chr8_1:29259227-29259246 Msa1188710:CDS 50.0%
TATGGCGACGCAATCCTGAA+GGG - chr8_1:29259244-29259263 None:intergenic 50.0%
ATTGCGTCGCCATACACACA+GGG + chr8_1:29259250-29259269 Msa1188710:CDS 50.0%
AGGGATATCGAACTCCCACA+TGG + chr8_1:29259293-29259312 Msa1188710:CDS 50.0%
TTGAACAAGCTCCAGCATGG+AGG + chr8_1:29259473-29259492 Msa1188710:CDS 50.0%
AGGTGGACAAGGTGGGATAT+TGG + chr8_1:29259502-29259521 Msa1188710:CDS 50.0%
GGTGGACAAGGTGGGATATT+GGG + chr8_1:29259503-29259522 Msa1188710:CDS 50.0%
AGGTGGGATATTGGGAATGG+TGG + chr8_1:29259511-29259530 Msa1188710:CDS 50.0%
GGTGGGATATTGGGAATGGT+GGG + chr8_1:29259512-29259531 Msa1188710:CDS 50.0%
TATGCTGGATCGTCAAAGCG+CGG + chr8_1:29259635-29259654 Msa1188710:CDS 50.0%
GACAAGCATCTGCTGAAGTC+TGG - chr8_1:29259703-29259722 None:intergenic 50.0%
CGTCTGTGTGTGTTTCTCCA+TGG + chr8_1:29260042-29260061 Msa1188710:three_prime_UTR 50.0%
CGACACGGATTCATCGTACA+CGG + chr8_1:29258240-29258259 Msa1188710:CDS 50.0%
ACTCGTCTTCCTGCTGAAAC+CGG + chr8_1:29258358-29258377 Msa1188710:CDS 50.0%
ACCGGAGAGGATGATGATAC+TGG + chr8_1:29258376-29258395 Msa1188710:CDS 50.0%
CTTGTAGAGAATTCCGTCCC+TGG - chr8_1:29258685-29258704 None:intergenic 50.0%
TTCCGGAGGTTGTGAGATTC+CGG - chr8_1:29258779-29258798 None:intergenic 50.0%
AAGGAACAGAAGGGAACGTG+TGG + chr8_1:29258851-29258870 Msa1188710:intron 50.0%
TTTGTGGATGGGGTTCCTAG+AGG + chr8_1:29259041-29259060 Msa1188710:CDS 50.0%
ATGGGGTTCCTAGAGGATGT+AGG + chr8_1:29259048-29259067 Msa1188710:CDS 50.0%
ATGGTCAGCCTACATCCTCT+AGG - chr8_1:29259059-29259078 None:intergenic 50.0%
TCTGATTCATGCCACAGTGG+TGG + chr8_1:29259083-29259102 Msa1188710:CDS 50.0%
CTTCAATCAAGCCACCACTG+TGG - chr8_1:29259097-29259116 None:intergenic 50.0%
! GCAGATAGGAGAGAGCACAA+AGG + chr8_1:29259127-29259146 Msa1188710:CDS 50.0%
! AGAGAGCACAAAGGGAGAAG+AGG + chr8_1:29259136-29259155 Msa1188710:CDS 50.0%
GAACATTCTGGATCCGGCTT+TGG + chr8_1:29259158-29259177 Msa1188710:CDS 50.0%
!! GGATCCGGCTTTGGATTATC+AGG + chr8_1:29259167-29259186 Msa1188710:CDS 50.0%
AGGGGATTTCATGTCCCTTC+AGG + chr8_1:29259227-29259246 Msa1188710:CDS 50.0%
TATGGCGACGCAATCCTGAA+GGG - chr8_1:29259244-29259263 None:intergenic 50.0%
ATTGCGTCGCCATACACACA+GGG + chr8_1:29259250-29259269 Msa1188710:CDS 50.0%
AGGGATATCGAACTCCCACA+TGG + chr8_1:29259293-29259312 Msa1188710:CDS 50.0%
TTGAACAAGCTCCAGCATGG+AGG + chr8_1:29259473-29259492 Msa1188710:CDS 50.0%
AGGTGGACAAGGTGGGATAT+TGG + chr8_1:29259502-29259521 Msa1188710:CDS 50.0%
GGTGGACAAGGTGGGATATT+GGG + chr8_1:29259503-29259522 Msa1188710:CDS 50.0%
AGGTGGGATATTGGGAATGG+TGG + chr8_1:29259511-29259530 Msa1188710:CDS 50.0%
GGTGGGATATTGGGAATGGT+GGG + chr8_1:29259512-29259531 Msa1188710:CDS 50.0%
TATGCTGGATCGTCAAAGCG+CGG + chr8_1:29259635-29259654 Msa1188710:CDS 50.0%
GACAAGCATCTGCTGAAGTC+TGG - chr8_1:29259703-29259722 None:intergenic 50.0%
CGTCTGTGTGTGTTTCTCCA+TGG + chr8_1:29260042-29260061 Msa1188710:three_prime_UTR 50.0%
GAGGATGCGTGAACGACGTA+TGG + chr8_1:29258155-29258174 Msa1188710:CDS 55.0%
GATGCGTGAACGACGTATGG+AGG + chr8_1:29258158-29258177 Msa1188710:CDS 55.0%
AAGACGTGTTCTGTCGGAGC+TGG + chr8_1:29258282-29258301 Msa1188710:CDS 55.0%
GTCGGAGCTGGTCAGATCTT+CGG + chr8_1:29258294-29258313 Msa1188710:CDS 55.0%
CTGGTCAGATCTTCGGAGGA+TGG + chr8_1:29258301-29258320 Msa1188710:CDS 55.0%
TCTTCCTGCTGAAACCGGAG+AGG + chr8_1:29258363-29258382 Msa1188710:CDS 55.0%
TCATCCTCTCCGGTTTCAGC+AGG - chr8_1:29258370-29258389 None:intergenic 55.0%
GACCGGAATCTCACAACCTC+CGG + chr8_1:29258774-29258793 Msa1188710:intron 55.0%
GTATGGCGACGCAATCCTGA+AGG - chr8_1:29259245-29259264 None:intergenic 55.0%
GATTGCGTCGCCATACACAC+AGG + chr8_1:29259249-29259268 Msa1188710:CDS 55.0%
AACAAGCTCCAGCATGGAGG+TGG + chr8_1:29259476-29259495 Msa1188710:CDS 55.0%
GTGGTGAAGGTGGACAAGGT+GGG + chr8_1:29259495-29259514 Msa1188710:CDS 55.0%
GGGATATGCAAAGCCTGCCA+TGG + chr8_1:29259583-29259602 Msa1188710:CDS 55.0%
TGCAAAGCCTGCCATGGAGA+CGG + chr8_1:29259589-29259608 Msa1188710:CDS 55.0%
ACTTCCCACTTCCGTCTCCA+TGG - chr8_1:29259603-29259622 None:intergenic 55.0%
TCAAAGCGCGGTCTTCCAAG+CGG + chr8_1:29259647-29259666 Msa1188710:CDS 55.0%
CTCATCAGAATCCCACCGCT+TGG - chr8_1:29259665-29259684 None:intergenic 55.0%
AGCGGTGGGATTCTGATGAG+TGG + chr8_1:29259665-29259684 Msa1188710:CDS 55.0%
TCAGCAGATGCTTGTCCTGC+CGG + chr8_1:29259707-29259726 Msa1188710:CDS 55.0%
GCATTAGCTGCATTTCCGGC+AGG - chr8_1:29259725-29259744 None:intergenic 55.0%
GAGGATGCGTGAACGACGTA+TGG + chr8_1:29258155-29258174 Msa1188710:CDS 55.0%
GATGCGTGAACGACGTATGG+AGG + chr8_1:29258158-29258177 Msa1188710:CDS 55.0%
AAGACGTGTTCTGTCGGAGC+TGG + chr8_1:29258282-29258301 Msa1188710:CDS 55.0%
GTCGGAGCTGGTCAGATCTT+CGG + chr8_1:29258294-29258313 Msa1188710:CDS 55.0%
CTGGTCAGATCTTCGGAGGA+TGG + chr8_1:29258301-29258320 Msa1188710:CDS 55.0%
TCTTCCTGCTGAAACCGGAG+AGG + chr8_1:29258363-29258382 Msa1188710:CDS 55.0%
TCATCCTCTCCGGTTTCAGC+AGG - chr8_1:29258370-29258389 None:intergenic 55.0%
GACCGGAATCTCACAACCTC+CGG + chr8_1:29258774-29258793 Msa1188710:intron 55.0%
GTATGGCGACGCAATCCTGA+AGG - chr8_1:29259245-29259264 None:intergenic 55.0%
GATTGCGTCGCCATACACAC+AGG + chr8_1:29259249-29259268 Msa1188710:CDS 55.0%
AACAAGCTCCAGCATGGAGG+TGG + chr8_1:29259476-29259495 Msa1188710:CDS 55.0%
GTGGTGAAGGTGGACAAGGT+GGG + chr8_1:29259495-29259514 Msa1188710:CDS 55.0%
GGGATATGCAAAGCCTGCCA+TGG + chr8_1:29259583-29259602 Msa1188710:CDS 55.0%
TGCAAAGCCTGCCATGGAGA+CGG + chr8_1:29259589-29259608 Msa1188710:CDS 55.0%
ACTTCCCACTTCCGTCTCCA+TGG - chr8_1:29259603-29259622 None:intergenic 55.0%
TCAAAGCGCGGTCTTCCAAG+CGG + chr8_1:29259647-29259666 Msa1188710:CDS 55.0%
CTCATCAGAATCCCACCGCT+TGG - chr8_1:29259665-29259684 None:intergenic 55.0%
AGCGGTGGGATTCTGATGAG+TGG + chr8_1:29259665-29259684 Msa1188710:CDS 55.0%
TCAGCAGATGCTTGTCCTGC+CGG + chr8_1:29259707-29259726 Msa1188710:CDS 55.0%
GCATTAGCTGCATTTCCGGC+AGG - chr8_1:29259725-29259744 None:intergenic 55.0%
TCATCGTACACGGAGCCGAC+AGG + chr8_1:29258250-29258269 Msa1188710:CDS 60.0%
GGAGCTGGTCAGATCTTCGG+AGG + chr8_1:29258297-29258316 Msa1188710:CDS 60.0%
CTCCAGCATGGAGGTGGTGA+AGG + chr8_1:29259482-29259501 Msa1188710:CDS 60.0%
CACCTTCACCACCTCCATGC+TGG - chr8_1:29259487-29259506 None:intergenic 60.0%
CAGCATGGAGGTGGTGAAGG+TGG + chr8_1:29259485-29259504 Msa1188710:CDS 60.0%
GGAGGTGGTGAAGGTGGACA+AGG + chr8_1:29259491-29259510 Msa1188710:CDS 60.0%
GGTGGTGAAGGTGGACAAGG+TGG + chr8_1:29259494-29259513 Msa1188710:CDS 60.0%
CCTGCCATGGAGACGGAAGT+GGG + chr8_1:29259596-29259615 Msa1188710:CDS 60.0%
TCATCGTACACGGAGCCGAC+AGG + chr8_1:29258250-29258269 Msa1188710:CDS 60.0%
GGAGCTGGTCAGATCTTCGG+AGG + chr8_1:29258297-29258316 Msa1188710:CDS 60.0%
CTCCAGCATGGAGGTGGTGA+AGG + chr8_1:29259482-29259501 Msa1188710:CDS 60.0%
CACCTTCACCACCTCCATGC+TGG - chr8_1:29259487-29259506 None:intergenic 60.0%
CAGCATGGAGGTGGTGAAGG+TGG + chr8_1:29259485-29259504 Msa1188710:CDS 60.0%
GGAGGTGGTGAAGGTGGACA+AGG + chr8_1:29259491-29259510 Msa1188710:CDS 60.0%
GGTGGTGAAGGTGGACAAGG+TGG + chr8_1:29259494-29259513 Msa1188710:CDS 60.0%
CCTGCCATGGAGACGGAAGT+GGG + chr8_1:29259596-29259615 Msa1188710:CDS 60.0%
GCCTGCCATGGAGACGGAAG+TGG + chr8_1:29259595-29259614 Msa1188710:CDS 65.0%
CCCACTTCCGTCTCCATGGC+AGG - chr8_1:29259599-29259618 None:intergenic 65.0%
AAGCGCGGTCTTCCAAGCGG+TGG + chr8_1:29259650-29259669 Msa1188710:CDS 65.0%
AGCGCGGTCTTCCAAGCGGT+GGG + chr8_1:29259651-29259670 Msa1188710:CDS 65.0%
GCCTGCCATGGAGACGGAAG+TGG + chr8_1:29259595-29259614 Msa1188710:CDS 65.0%
CCCACTTCCGTCTCCATGGC+AGG - chr8_1:29259599-29259618 None:intergenic 65.0%
AAGCGCGGTCTTCCAAGCGG+TGG + chr8_1:29259650-29259669 Msa1188710:CDS 65.0%
AGCGCGGTCTTCCAAGCGGT+GGG + chr8_1:29259651-29259670 Msa1188710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 29257997 29260279 29257997 ID=Msa1188710;Name=Msa1188710
chr8_1 mRNA 29257997 29260279 29257997 ID=Msa1188710-mRNA-1;Parent=Msa1188710;Name=Msa1188710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=100|1|1|1|1|1|2|363|412
chr8_1 exon 29257997 29258442 29257997 ID=Msa1188710-mRNA-1:exon:10248;Parent=Msa1188710-mRNA-1
chr8_1 exon 29259024 29260279 29259024 ID=Msa1188710-mRNA-1:exon:10249;Parent=Msa1188710-mRNA-1
chr8_1 five_prime_UTR 29257997 29258096 29257997 ID=Msa1188710-mRNA-1:five_prime_utr;Parent=Msa1188710-mRNA-1
chr8_1 CDS 29258097 29258442 29258097 ID=Msa1188710-mRNA-1:cds;Parent=Msa1188710-mRNA-1
chr8_1 CDS 29259024 29259916 29259024 ID=Msa1188710-mRNA-1:cds;Parent=Msa1188710-mRNA-1
chr8_1 three_prime_UTR 29259917 29260279 29259917 ID=Msa1188710-mRNA-1:three_prime_utr;Parent=Msa1188710-mRNA-1
Gene Sequence

>Msa1188710

ATGACGAAAAAAGCTGTATTGATCGGAATCAACTACCCAGGAACAAAAGCAGAGTTACGAGGATGCGTGAACGACGTATGGAGGATGCACAAATGCTTGATCGAACGTTACGGTTTTTCCGAAGATGACATCACTGTTTTGATCGACACGGATTCATCGTACACGGAGCCGACAGGAAAGAACATAAGACGTGTTCTGTCGGAGCTGGTCAGATCTTCGGAGGATGGTGATCTGCTGTTTGTTCATTATAGTGGACATGGGACTCGTCTTCCTGCTGAAACCGGAGAGGATGATGATACTGGTTTTGATGAATGTATTGTTCCTTCTGATATGAATCTCATCACTGATGATGATTTCAAGGAATTTGTGGATGGGGTTCCTAGAGGATGTAGGCTGACCATTGTATCTGATTCATGCCACAGTGGTGGCTTGATTGAAGAAGCTAAGGAGCAGATAGGAGAGAGCACAAAGGGAGAAGAGGAACATTCTGGATCCGGCTTTGGATTATCAGGCTTTCTGCATAGGAAAGTTGAGGATGCTATTGAGTCAAGGGGATTTCATGTCCCTTCAGGATTGCGTCGCCATACACACAGGGATGAAGAAACAAATGAAGATAGGGATATCGAACTCCCACATGGAGTGAAGAATAGGTCTCTGCCACTTTCAACCCTCATTGATATACTTCAGCAGAAAACTGGGAAAGAAAATATAGATGTTGGTCAACTGAGGCCTACACTTTTTGATGTTTTTGGGGAAGATGCTAGTCCTAAAGTGAAGAAATTTATGAAAGTCATCTTGAACAAGCTCCAGCATGGAGGTGGTGAAGGTGGACAAGGTGGGATATTGGGAATGGTGGGTAGTCTTGCCCAAGAGTTTCTTAAGCAAAAGCTGAATGATAATGATGAGGGATATGCAAAGCCTGCCATGGAGACGGAAGTGGGAAGTAAGCATGAAGTATATGCTGGATCGTCAAAGCGCGGTCTTCCAAGCGGTGGGATTCTGATGAGTGGCTGTCAGACAGACCAGACTTCAGCAGATGCTTGTCCTGCCGGAAATGCAGCTAATGCTTATGGAGCTTTCAGCAATGCAATACAGGCTATAATTGAGGAGACTGATGGTGCAATTACATACTCGGAGCTTATTCTCAAGGCTAGAGAGAAGCTACAGAAAGATGGATTCACTCAAAAGCCAGGACTCTATTGCAGTGATCACCATGTTGATGATCCTTTCTTGTGCTGA

Protein sequence

>Msa1188710

MTKKAVLIGINYPGTKAELRGCVNDVWRMHKCLIERYGFSEDDITVLIDTDSSYTEPTGKNIRRVLSELVRSSEDGDLLFVHYSGHGTRLPAETGEDDDTGFDECIVPSDMNLITDDDFKEFVDGVPRGCRLTIVSDSCHSGGLIEEAKEQIGESTKGEEEHSGSGFGLSGFLHRKVEDAIESRGFHVPSGLRRHTHRDEETNEDRDIELPHGVKNRSLPLSTLIDILQQKTGKENIDVGQLRPTLFDVFGEDASPKVKKFMKVILNKLQHGGGEGGQGGILGMVGSLAQEFLKQKLNDNDEGYAKPAMETEVGSKHEVYAGSSKRGLPSGGILMSGCQTDQTSADACPAGNAANAYGAFSNAIQAIIEETDGAITYSELILKAREKLQKDGFTQKPGLYCSDHHVDDPFLC*