AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0932350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932350 MtrunA17_Chr6g0449281 87.187 679 19 6 1 611 185 863 0.0 1158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932350 AT3G27530.1 57.794 680 217 10 1 611 183 861 0.0 726

Find 156 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTCTCACTACAATTT+TGG 0.103699 6_3:+438204 Msa0932350:CDS
TCCCTTTAGTAGCAATTTAA+TGG 0.167600 6_3:-434864 None:intergenic
CTCATGGAATGAATGATTTA+TGG 0.198357 6_3:-436089 None:intergenic
CTCTTCTGCTCTATTTCTTC+TGG 0.216042 6_3:-438325 None:intergenic
AGTTGCCTCGGATTCAATTT+TGG 0.217310 6_3:-439025 None:intergenic
ATTTGCGAGAAAGAAATTTA+AGG 0.224738 6_3:+439616 Msa0932350:three_prime_UTR
GCATCGAATGGTGAAATATT+TGG 0.231055 6_3:+437709 Msa0932350:CDS
CTTCAAAGACGACGATCTTT+TGG 0.239201 6_3:-434367 None:intergenic
TGGATTAGACTTTCCATCTT+TGG 0.240722 6_3:-437753 None:intergenic
TGTACAGCTAACTCAAATTA+TGG 0.245262 6_3:+439444 Msa0932350:three_prime_UTR
GAGGATGTTCATATGTCTTT+TGG 0.246476 6_3:+436112 Msa0932350:CDS
TGTTCTATCTCATATATTAA+AGG 0.274403 6_3:+436468 Msa0932350:CDS
CTCTACGGAGTGTCTCTATT+TGG 0.276400 6_3:-438954 None:intergenic
CTTCTTGCTAGCAAAGTTCT+TGG 0.288001 6_3:+435715 Msa0932350:CDS
TTATTCTAAGTATAGAATTC+AGG 0.292435 6_3:-435762 None:intergenic
AATGAATGATTTATGGAATA+TGG 0.305224 6_3:-436082 None:intergenic
TCCAAAATTGTAGTGAGAAT+TGG 0.310219 6_3:-438205 None:intergenic
ATCTCCAAGAAGCATCTAAA+AGG 0.329364 6_3:+438977 Msa0932350:CDS
ATTAGGCATTGAGATGTATT+GGG 0.331445 6_3:+435659 Msa0932350:intron
CTTCAAGACACAGTTCTTGC+TGG 0.340537 6_3:+439512 Msa0932350:three_prime_UTR
TGTATTGGGGATTTAATTGC+TGG 0.343320 6_3:+435673 Msa0932350:CDS
GGAGGTTCTGAGGCTGATCC+TGG 0.348630 6_3:+434884 Msa0932350:CDS
CTGGACAGTATGTTGATATT+AGG 0.353105 6_3:+435056 Msa0932350:CDS
CATTAGGCATTGAGATGTAT+TGG 0.357978 6_3:+435658 Msa0932350:intron
CAGGATCTTGTTATTCGAAA+TGG 0.358756 6_3:+438853 Msa0932350:intron
TTCTTTCTCGCAAATTTGAT+TGG 0.365084 6_3:-439608 None:intergenic
AGGAAGCAGTGCACTGCATT+GGG 0.369828 6_3:-437839 None:intergenic
TAGTGCTAGGTTGTTGGAGT+TGG 0.397357 6_3:+439297 Msa0932350:three_prime_UTR
ACCATTAAATTGCTACTAAA+GGG 0.405073 6_3:+434863 Msa0932350:CDS
ACCGCACAGCGAACTGCAAC+AGG 0.405621 6_3:-435098 None:intergenic
AAATAAGACAGCTCTGGTTC+AGG 0.411566 6_3:+434928 Msa0932350:CDS
CAAAAGATCGTCGTCTTTGA+AGG 0.413562 6_3:+434368 Msa0932350:CDS
AACATACCCTTTCCTTGCAT+TGG 0.414968 6_3:-436498 None:intergenic
AACCATTAAATTGCTACTAA+AGG 0.420583 6_3:+434862 Msa0932350:CDS
TTCACCATTCGATGCATTAG+TGG 0.421258 6_3:-437701 None:intergenic
CACTTACTCTTTGCTCAGAC+TGG 0.421800 6_3:-438915 None:intergenic
TCGTAGCAATGTATCCAATC+AGG 0.421858 6_3:+434572 Msa0932350:CDS
AGTGCTAGGTTGTTGGAGTT+GGG 0.430453 6_3:+439298 Msa0932350:three_prime_UTR
AGAAGGACCCTCAACATTCC+CGG 0.438413 6_3:+439164 Msa0932350:CDS
AGAAGATATTCAGTATCATA+AGG 0.439417 6_3:+434399 Msa0932350:CDS
TAGACTTAGTGCTAGGTTGT+TGG 0.440436 6_3:+439291 Msa0932350:three_prime_UTR
CTATTACACGGTCTTACGTT+GGG 0.442372 6_3:+436314 Msa0932350:CDS
TTACCTCAGCTTCACGGGTC+AGG 0.443998 6_3:-434232 None:intergenic
TGCAGCTCCTAATGATTGCA+TGG 0.452764 6_3:-437675 None:intergenic
GAGGCACCCATGCAATCATT+AGG 0.454933 6_3:+437668 Msa0932350:CDS
CAGCTAACTCAAATTATGGT+TGG 0.462210 6_3:+439448 Msa0932350:three_prime_UTR
CTTTCACCTCATTCTCCAGT+TGG 0.464880 6_3:-439131 None:intergenic
TGGTACATTGGCCGAGGACC+TGG 0.465456 6_3:+438873 Msa0932350:CDS
TATTCTAAGTATAGAATTCA+GGG 0.467808 6_3:-435761 None:intergenic
TAGGAAGCAGTGCACTGCAT+TGG 0.468081 6_3:-437840 None:intergenic
CAGTCTGAGCAAAGAGTAAG+TGG 0.470796 6_3:+438916 Msa0932350:CDS
TAAAAGGTTGGAGATGCTTA+AGG 0.471362 6_3:+438993 Msa0932350:CDS
ACCCTCAACATTCCCGGATG+TGG 0.472840 6_3:+439170 Msa0932350:CDS
TAGGTTGTTGGAGTTGGGAG+AGG 0.476758 6_3:+439303 Msa0932350:three_prime_UTR
ACTATGTATCAGAATTTAGC+TGG 0.480799 6_3:+439045 Msa0932350:CDS
CTCCAATGCCTTCAAGTAGT+TGG 0.483847 6_3:-439333 None:intergenic
GAAGCAACACTCTGAGATAC+AGG 0.484950 6_3:+438396 Msa0932350:CDS
TCAAATTGTTCAGCAATTCA+AGG 0.492873 6_3:-434548 None:intergenic
TATAGAATTCAGGGCAGGTT+CGG 0.494250 6_3:-435752 None:intergenic
TGAGCAATCTAATCTCCAAC+TGG 0.496949 6_3:+439116 Msa0932350:CDS
GAAGCAAGAAGAAGCTCTGA+AGG 0.501751 6_3:+439207 Msa0932350:CDS
ATTGGGGCAATCTGCTAGCC+AGG 0.501980 6_3:-437822 None:intergenic
TATCAATGAATCAAATCCTA+TGG 0.502065 6_3:-434680 None:intergenic
TGATTTATGGAATATGGTTG+TGG 0.502146 6_3:-436076 None:intergenic
GGAGATGCTTAAGGCAGAAA+AGG 0.502282 6_3:+439002 Msa0932350:CDS
CCAAGAAGCATCTAAAAGGT+TGG 0.502752 6_3:+438981 Msa0932350:CDS
AAAAGGTTACCTCAGCTTCA+CGG 0.504484 6_3:-434238 None:intergenic
ACAGAGTCAACAAACCTGAT+TGG 0.504863 6_3:-434586 None:intergenic
ATCTTTGGATTTCATTGAAG+AGG 0.505262 6_3:-437738 None:intergenic
GATGGAAAGTCTAATCCATC+GGG 0.505732 6_3:+437758 Msa0932350:CDS
TCAGAATTTAGCTGGAAAGA+TGG 0.509840 6_3:+439053 Msa0932350:CDS
TAAGGTGTGGTCGAGCATCT+AGG 0.509927 6_3:-437859 None:intergenic
AAAGGTTACCTCAGCTTCAC+GGG 0.511591 6_3:-434237 None:intergenic
CTCCACATCCGGGAATGTTG+AGG 0.512219 6_3:-439172 None:intergenic
TCCACATCCGGGAATGTTGA+GGG 0.513884 6_3:-439171 None:intergenic
ATGATCTGCTTGTATGCCTC+GGG 0.515345 6_3:+439248 Msa0932350:three_prime_UTR
GTGAAAGCACTGAGGGGAGA+AGG 0.521373 6_3:+439147 Msa0932350:CDS
AGTTCTTGGAGAGGAGCCGC+AGG 0.523096 6_3:+435729 Msa0932350:CDS
TCTTCAATGAAATCCAAAGA+TGG 0.523114 6_3:+437740 Msa0932350:CDS
TGTTTATTAGCATCTTTCCC+AGG 0.524217 6_3:-434902 None:intergenic
TATTAGGTGTTGAAAGCCAA+TGG 0.525069 6_3:+435072 Msa0932350:CDS
TAATCTCCAACTGGAGAATG+AGG 0.528085 6_3:+439125 Msa0932350:CDS
GCCGAGGACCTGGCTAAGAC+AGG 0.528464 6_3:+438883 Msa0932350:CDS
CTAGCTCAAGAAGATAAGTA+AGG 0.530499 6_3:-437877 None:intergenic
GGATTTCATTGAAGAGGTGA+GGG 0.532305 6_3:-437732 None:intergenic
CTCAAGGCTATTGTATGCAT+CGG 0.535787 6_3:-439097 None:intergenic
CCTTGCTTTGTTCTTGCCCG+AGG 0.536935 6_3:-439264 None:intergenic
CAATCTCCAATGCAAGGAAA+GGG 0.537286 6_3:+436492 Msa0932350:CDS
AACTACTACCTGTCTTAGCC+AGG 0.540435 6_3:-438891 None:intergenic
GATGTTGACCAACTACTTGA+AGG 0.541260 6_3:+439325 Msa0932350:three_prime_UTR
TTCAGGGCAGGTTCGGCCTG+CGG 0.541652 6_3:-435745 None:intergenic
ATTCAGTATCATAAGGGAGG+AGG 0.541955 6_3:+434406 Msa0932350:CDS
GCTATTACACGGTCTTACGT+TGG 0.542590 6_3:+436313 Msa0932350:CDS
ACATATGAACATCCTCCTCA+TGG 0.545850 6_3:-436105 None:intergenic
TGGATTTCATTGAAGAGGTG+AGG 0.546280 6_3:-437733 None:intergenic
AGATGGTGGTGTAGTTGTGC+AGG 0.546958 6_3:+434436 Msa0932350:CDS
ATGCTTCTTGGAGATCTCTA+CGG 0.548408 6_3:-438969 None:intergenic
AATGATCTGCTTGTATGCCT+CGG 0.550054 6_3:+439247 Msa0932350:three_prime_UTR
GAAGGCATTGGAGATGATGC+TGG 0.553705 6_3:+439343 Msa0932350:three_prime_UTR
TGTTATTCGAAATGGTACAT+TGG 0.553981 6_3:+438861 Msa0932350:CDS
GCGTAGACGCTAGCATTGCT+TGG 0.554715 6_3:-436048 None:intergenic
CAGGTGAGTAAGAAGCAGTA+AGG 0.555424 6_3:-434213 None:intergenic
TCGAAATGGTACATTGGCCG+AGG 0.555789 6_3:+438867 Msa0932350:CDS
ACAATCTCCAATGCAAGGAA+AGG 0.556110 6_3:+436491 Msa0932350:CDS
GAATGAGGTGAAAGCACTGA+GGG 0.557554 6_3:+439140 Msa0932350:CDS
GAAGATATTCAGTATCATAA+GGG 0.558030 6_3:+434400 Msa0932350:CDS
ATTAGGTGTTGAAAGCCAAT+GGG 0.561629 6_3:+435073 Msa0932350:CDS
GAGATCTTCAGCAGCTAGCA+TGG 0.565527 6_3:+438126 Msa0932350:CDS
ATTCTGATACATAGTTGCCT+CGG 0.567736 6_3:-439037 None:intergenic
AGATGGAAAGTCTAATCCAT+CGG 0.567871 6_3:+437757 Msa0932350:CDS
CAGAAGAGAGGCGAAAGTGA+TGG 0.575651 6_3:+438340 Msa0932350:CDS
CTTCCAGGTGATAAGAAATG+AGG 0.577509 6_3:+434190 None:intergenic
GACCAACTACTTGAAGGCAT+TGG 0.577561 6_3:+439331 Msa0932350:three_prime_UTR
TTAGGCATTGAGATGTATTG+GGG 0.578774 6_3:+435660 Msa0932350:intron
ACCTGTCTTAGCCAGGTCCT+CGG 0.579485 6_3:-438884 None:intergenic
GAGGTTCTGAGGCTGATCCT+GGG 0.579669 6_3:+434885 Msa0932350:CDS
GCAAAGAGTAAGTGGAGGCA+TGG 0.581767 6_3:+438924 Msa0932350:CDS
TGCTAGCAAAGTTCTTGGAG+AGG 0.583453 6_3:+435720 Msa0932350:CDS
GTTGGAGATTAGATTGCTCA+AGG 0.585113 6_3:-439113 None:intergenic
TTCAGTATCATAAGGGAGGA+GGG 0.588314 6_3:+434407 Msa0932350:CDS
CTTACGTTGGGTGAAAATGA+TGG 0.589032 6_3:+436326 Msa0932350:CDS
CTAAGTATAGAATTCAGGGC+AGG 0.589390 6_3:-435757 None:intergenic
CTCAACATTCCCGGATGTGG+AGG 0.590364 6_3:+439173 Msa0932350:CDS
AAAGGACAATCTCCAATGCA+AGG 0.590795 6_3:+436486 Msa0932350:CDS
GCTACTAAAGGGAGGTTCTG+AGG 0.602501 6_3:+434874 Msa0932350:CDS
ACCTGTTGCAGTTCGCTGTG+CGG 0.603328 6_3:+435097 Msa0932350:CDS
TGCTGAAGATGTCGAAGACG+AGG 0.604461 6_3:+439369 Msa0932350:three_prime_UTR
GAGGAGGGAAATTCAGATGG+TGG 0.604849 6_3:+434422 Msa0932350:CDS
ATTAAATTGCTACTAAAGGG+AGG 0.604946 6_3:+434866 Msa0932350:CDS
TTGATTGGCTAACACGACAA+AGG 0.605466 6_3:-439593 None:intergenic
GCAGCTCCTAATGATTGCAT+GGG 0.605658 6_3:-437674 None:intergenic
GAAGAAATAGAGCAGAAGAG+AGG 0.612954 6_3:+438328 Msa0932350:CDS
AAAGGCCAAAATTGAATCCG+AGG 0.614744 6_3:+439020 Msa0932350:CDS
ACTTTCAGCATGCTATTACA+CGG 0.615199 6_3:+436302 Msa0932350:intron
AGGTGGATAGACTTAGTGCT+AGG 0.616666 6_3:+439284 Msa0932350:three_prime_UTR
TGAGCGTATGAATTTCCCGA+TGG 0.618009 6_3:-437773 None:intergenic
TCACCTGACCCGTGAAGCTG+AGG 0.618628 6_3:+434229 Msa0932350:CDS
AAATCATTCATTCCATGAGG+AGG 0.627668 6_3:+436093 Msa0932350:CDS
TGAAAATGATGGTGATCTTG+AGG 0.627908 6_3:+436337 Msa0932350:CDS
GAACTGCAACAGGTACCCAT+TGG 0.628157 6_3:-435088 None:intergenic
TATTAGAGAACAGATTGTGG+AGG 0.628847 6_3:+438267 Msa0932350:CDS
GATATTCAGTATCATAAGGG+AGG 0.629554 6_3:+434403 Msa0932350:CDS
GAAGCTCTGAAGGAGAGTGA+AGG 0.637129 6_3:+439217 Msa0932350:CDS
CCTCGGGCAAGAACAAAGCA+AGG 0.643346 6_3:+439264 Msa0932350:three_prime_UTR
AAATATTAGAGAACAGATTG+TGG 0.646986 6_3:+438264 Msa0932350:CDS
AGAACCACTAATGCATCGAA+TGG 0.648345 6_3:+437697 Msa0932350:CDS
AGGGAGGAGGGAAATTCAGA+TGG 0.650411 6_3:+434419 Msa0932350:CDS
CATAAATCATTCATTCCATG+AGG 0.652425 6_3:+436090 Msa0932350:CDS
GGAAGCAGTGCACTGCATTG+GGG 0.654074 6_3:-437838 None:intergenic
GTGATGGTGAATATATAAAG+CGG 0.654240 6_3:+438356 Msa0932350:CDS
GTACTACTCAGAGAGACCAT+AGG 0.657625 6_3:+434664 Msa0932350:CDS
TCAAGAAGATAAGTAAGGTG+TGG 0.659005 6_3:-437872 None:intergenic
TCTGAGCAAAGAGTAAGTGG+AGG 0.686096 6_3:+438919 Msa0932350:CDS
AGAATGAGGTGAAAGCACTG+AGG 0.703852 6_3:+439139 Msa0932350:CDS
CGGGCAAGAACAAAGCAAGG+TGG 0.713272 6_3:+439267 Msa0932350:three_prime_UTR
AATGAGGTGAAAGCACTGAG+GGG 0.725813 6_3:+439141 Msa0932350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAGTTTAAGAAAAATA+AGG - chr6_3:434295-434314 None:intergenic 10.0%
!! TCTTATCTAAATAAATTTAA+TGG + chr6_3:434333-434352 Msa0932350:intron 10.0%
!! TAAATAAATTTAATGGTTAC+AGG + chr6_3:434340-434359 Msa0932350:intron 15.0%
!! GAAAAAAAGAAAAACAAAAT+TGG - chr6_3:435552-435571 None:intergenic 15.0%
!!! TTTTCTTTTTTCATTTCATT+TGG - chr6_3:436776-436795 None:intergenic 15.0%
!! ATCAGATTAAATAAACTTAT+AGG + chr6_3:437157-437176 Msa0932350:intron 15.0%
!! TCAGATTAAATAAACTTATA+GGG + chr6_3:437158-437177 Msa0932350:intron 15.0%
!! ATCATTATGTATAAATGTAT+GGG - chr6_3:437556-437575 None:intergenic 15.0%
!! TATCATTATGTATAAATGTA+TGG - chr6_3:437557-437576 None:intergenic 15.0%
!!! GAAATTTTAAAAAATGTTTC+AGG + chr6_3:437628-437647 Msa0932350:intron 15.0%
!! ATATAATAAGTCAGAAAATT+GGG + chr6_3:438014-438033 Msa0932350:intron 15.0%
!! CTTTAACAAATTTATCAATA+TGG + chr6_3:438766-438785 Msa0932350:intron 15.0%
!!! CTTAAACTTTTTTCATTATG+CGG + chr6_3:434302-434321 Msa0932350:intron 20.0%
!!! AATTTGCTTTATATAGCTTT+TGG + chr6_3:434492-434511 Msa0932350:intron 20.0%
!!! TTTTGGTCTAAATAATTCTT+TGG + chr6_3:434509-434528 Msa0932350:intron 20.0%
!!! TTATTCTTTTACTCAACAAA+AGG + chr6_3:434729-434748 Msa0932350:CDS 20.0%
!! AAGTATTCTTCTTGATAAAT+CGG + chr6_3:435388-435407 Msa0932350:intron 20.0%
!!! TTTCTTTTTTTCTTTCTGAA+AGG + chr6_3:435560-435579 Msa0932350:intron 20.0%
!! TCAATTATTATGAAGTATGA+AGG + chr6_3:435603-435622 Msa0932350:intron 20.0%
!! CAATTATTATGAAGTATGAA+GGG + chr6_3:435604-435623 Msa0932350:intron 20.0%
!! AATTATTATGAAGTATGAAG+GGG + chr6_3:435605-435624 Msa0932350:intron 20.0%
!! TATTCTAAGTATAGAATTCA+GGG - chr6_3:435764-435783 None:intergenic 20.0%
!! TTATTCTAAGTATAGAATTC+AGG - chr6_3:435765-435784 None:intergenic 20.0%
!!! CTATACTTAGAATAATTTTG+AGG + chr6_3:435770-435789 Msa0932350:CDS 20.0%
!! AATTTAAGAGCTGATAAATT+TGG + chr6_3:435921-435940 Msa0932350:intron 20.0%
!!! AAGAAGCATAAATGAAAAAT+AGG - chr6_3:435973-435992 None:intergenic 20.0%
!! AATGAATGATTTATGGAATA+TGG - chr6_3:436085-436104 None:intergenic 20.0%
!! TAACTGAAATGTTATGATTT+AGG - chr6_3:436241-436260 None:intergenic 20.0%
!!! TTTCATATTTCAGATTTGTT+TGG + chr6_3:436393-436412 Msa0932350:intron 20.0%
!! TGTTCTATCTCATATATTAA+AGG + chr6_3:436468-436487 Msa0932350:CDS 20.0%
!!! CTTTATTTTACAACAAGTTT+TGG + chr6_3:436550-436569 Msa0932350:intron 20.0%
!! TATAGATTTCTACTATAGAA+AGG + chr6_3:436706-436725 Msa0932350:intron 20.0%
!!! AAACAACAATTGTTGATTAA+AGG + chr6_3:437132-437151 Msa0932350:intron 20.0%
!! CAGATTAAATAAACTTATAG+GGG + chr6_3:437159-437178 Msa0932350:intron 20.0%
!! AAATAGCAAAAGTAACATTT+GGG - chr6_3:437438-437457 None:intergenic 20.0%
!! AAAATAGCAAAAGTAACATT+TGG - chr6_3:437439-437458 None:intergenic 20.0%
!!! TTACTTTTGCTATTTTTGTA+TGG + chr6_3:437443-437462 Msa0932350:intron 20.0%
!! ATAAACTATTCATACTATTG+CGG + chr6_3:437474-437493 Msa0932350:intron 20.0%
!! ATACATAATGATAGTATGAA+TGG + chr6_3:437564-437583 Msa0932350:intron 20.0%
!! GATATAATAAGTCAGAAAAT+TGG + chr6_3:438013-438032 Msa0932350:intron 20.0%
!! GTCAATGTTAATAAAAACTA+CGG - chr6_3:438572-438591 None:intergenic 20.0%
!!! AATTATGGTTGGATTTTTAT+TGG + chr6_3:439459-439478 Msa0932350:three_prime_UTR 20.0%
! TAAGAAAAATAAGGTGAAGT+GGG - chr6_3:434286-434305 None:intergenic 25.0%
! TTAAGAAAAATAAGGTGAAG+TGG - chr6_3:434287-434306 None:intergenic 25.0%
! AGAAGATATTCAGTATCATA+AGG + chr6_3:434399-434418 Msa0932350:CDS 25.0%
! GAAGATATTCAGTATCATAA+GGG + chr6_3:434400-434419 Msa0932350:CDS 25.0%
! AGTTGAAATCAGTATTAATC+AGG - chr6_3:434631-434650 None:intergenic 25.0%
! TATCAATGAATCAAATCCTA+TGG - chr6_3:434683-434702 None:intergenic 25.0%
! ATAACAAGAGTTAGCTATAA+GGG - chr6_3:434799-434818 None:intergenic 25.0%
! TATAACAAGAGTTAGCTATA+AGG - chr6_3:434800-434819 None:intergenic 25.0%
! AACCATTAAATTGCTACTAA+AGG + chr6_3:434862-434881 Msa0932350:CDS 25.0%
! ACCATTAAATTGCTACTAAA+GGG + chr6_3:434863-434882 Msa0932350:CDS 25.0%
! TCACTTTGTCATTACTTAAA+AGG - chr6_3:435306-435325 None:intergenic 25.0%
!! TCATTGAATCCAATTTTCTT+TGG + chr6_3:435444-435463 Msa0932350:intron 25.0%
! CATATGAAACCAAAGAAAAT+TGG - chr6_3:435456-435475 None:intergenic 25.0%
!! TGTTTTCAAAAACTTTTGTG+AGG + chr6_3:435828-435847 Msa0932350:CDS 25.0%
! TAGATAACGTTAATCAAGAA+AGG - chr6_3:436008-436027 None:intergenic 25.0%
! GAAACAAATAACGAAGTTAA+AGG - chr6_3:436282-436301 None:intergenic 25.0%
!! TTTGGAGTAAAAGCTTAAAT+TGG - chr6_3:436758-436777 None:intergenic 25.0%
! TTCAGATTGAGAAATTAGTT+AGG + chr6_3:436851-436870 Msa0932350:intron 25.0%
! GTTCTTATGAATTTACTTGA+AGG + chr6_3:437408-437427 Msa0932350:intron 25.0%
! TAGTATGAATGGTAAGATTA+AGG + chr6_3:437575-437594 Msa0932350:intron 25.0%
!!! AGCTATTATTTTGAAATTGC+TGG + chr6_3:437796-437815 Msa0932350:CDS 25.0%
! CTGACTTATTATATCAACAA+TGG - chr6_3:438008-438027 None:intergenic 25.0%
! AAATATTAGAGAACAGATTG+TGG + chr6_3:438264-438283 Msa0932350:CDS 25.0%
! ACGTTGTTAATTATACAGTA+AGG - chr6_3:438498-438517 None:intergenic 25.0%
! CTGTTTAATAATAGTACCTT+AGG + chr6_3:438646-438665 Msa0932350:intron 25.0%
!!! ACACACTTCTTATTTTTCTA+TGG - chr6_3:438725-438744 None:intergenic 25.0%
!! ATAGAAAAATAAGAAGTGTG+TGG + chr6_3:438724-438743 Msa0932350:intron 25.0%
!!! ATAAATTTGTTAAAGAGCAC+TGG - chr6_3:438761-438780 None:intergenic 25.0%
!! TTGATATGTGTTTGATTTAG+TGG + chr6_3:438800-438819 Msa0932350:intron 25.0%
!!! ATTTTTATTTTCATCGTCTC+AGG + chr6_3:438834-438853 Msa0932350:intron 25.0%
! ATTTGCGAGAAAGAAATTTA+AGG + chr6_3:439616-439635 Msa0932350:three_prime_UTR 25.0%
ACATTTCTGTTAGAGCAAAA+AGG - chr6_3:434258-434277 None:intergenic 30.0%
AAGAAAAATAAGGTGAAGTG+GGG - chr6_3:434285-434304 None:intergenic 30.0%
!!! TAATTCTTTGGTCACTTTTC+AGG + chr6_3:434521-434540 Msa0932350:intron 30.0%
TCAAATTGTTCAGCAATTCA+AGG - chr6_3:434551-434570 None:intergenic 30.0%
!! ATACTGATTTCAACTATACG+TGG + chr6_3:434636-434655 Msa0932350:intron 30.0%
!!! ATATTGATTTTGAAGCTGAG+AGG + chr6_3:434700-434719 Msa0932350:CDS 30.0%
! TCTTTTACTCAACAAAAGGT+TGG + chr6_3:434733-434752 Msa0932350:intron 30.0%
TCCCTTTAGTAGCAATTTAA+TGG - chr6_3:434867-434886 None:intergenic 30.0%
ATTAAATTGCTACTAAAGGG+AGG + chr6_3:434866-434885 Msa0932350:CDS 30.0%
! GAACTTATACTTCTGTTTTG+TGG + chr6_3:435012-435031 Msa0932350:intron 30.0%
TTACAAATGACATCTAGACA+TGG + chr6_3:435249-435268 Msa0932350:intron 30.0%
TATTCTTCTTGATAAATCGG+TGG + chr6_3:435391-435410 Msa0932350:intron 30.0%
TTGATGAACTTTCTCTCATT+AGG + chr6_3:435642-435661 Msa0932350:intron 30.0%
!! ATTAGGCATTGAGATGTATT+GGG + chr6_3:435659-435678 Msa0932350:intron 30.0%
!! GTTTTTGAAAACATCATCAG+CGG - chr6_3:435821-435840 None:intergenic 30.0%
! TTCAAAAACTTTTGTGAGGT+TGG + chr6_3:435832-435851 Msa0932350:intron 30.0%
CTAAATCAGAAAAATGCTGA+TGG + chr6_3:436025-436044 Msa0932350:intron 30.0%
TGATTTATGGAATATGGTTG+TGG - chr6_3:436079-436098 None:intergenic 30.0%
CTCATGGAATGAATGATTTA+TGG - chr6_3:436092-436111 None:intergenic 30.0%
CATAAATCATTCATTCCATG+AGG + chr6_3:436090-436109 Msa0932350:CDS 30.0%
! ATGTTCATATGTCTTTTGGA+AGG + chr6_3:436116-436135 Msa0932350:CDS 30.0%
!!! TTTTGGAAGGTTTGTTTTGT+TGG + chr6_3:436129-436148 Msa0932350:intron 30.0%
!! TTTTGTTGGTTGTGCTTTAA+TGG + chr6_3:436143-436162 Msa0932350:intron 30.0%
! TCAGATTTGTTTGGATTATC+TGG + chr6_3:436402-436421 Msa0932350:intron 30.0%
AAGCTAAAAATGCAATGAAG+CGG - chr6_3:436533-436552 None:intergenic 30.0%
!! GTTTTGGTAGATGTAATGTA+AGG + chr6_3:436566-436585 Msa0932350:intron 30.0%
TTTCTGTGAAAGAAGCTAAT+AGG + chr6_3:436881-436900 Msa0932350:intron 30.0%
TCCATTCAACTACTAACAAA+GGG - chr6_3:436959-436978 None:intergenic 30.0%
TTCCATTCAACTACTAACAA+AGG - chr6_3:436960-436979 None:intergenic 30.0%
GTAAAACTTGCACTAACAAA+AGG - chr6_3:437300-437319 None:intergenic 30.0%
CTAGAGCAAAATAAACCAAT+AGG - chr6_3:437524-437543 None:intergenic 30.0%
TGAATGGTAAGATTAAGGAA+AGG + chr6_3:437580-437599 Msa0932350:intron 30.0%
GAAAGGAAGAAGTGAAATTT+AGG + chr6_3:437597-437616 Msa0932350:intron 30.0%
ATCTTTGGATTTCATTGAAG+AGG - chr6_3:437741-437760 None:intergenic 30.0%
TCTTCAATGAAATCCAAAGA+TGG + chr6_3:437740-437759 Msa0932350:CDS 30.0%
TGTCAGAAACAGTTTGTATA+AGG + chr6_3:437909-437928 Msa0932350:intron 30.0%
GTCAGAAACAGTTTGTATAA+GGG + chr6_3:437910-437929 Msa0932350:intron 30.0%
TCAGAAACAGTTTGTATAAG+GGG + chr6_3:437911-437930 Msa0932350:intron 30.0%
TATAACAAATCCACAGATAG+CGG + chr6_3:437968-437987 Msa0932350:intron 30.0%
!!! AGTTTTGTTTTCGCTAATGT+GGG + chr6_3:438076-438095 Msa0932350:CDS 30.0%
! TCCAATTCTCACTACAATTT+TGG + chr6_3:438204-438223 Msa0932350:CDS 30.0%
TCCAAAATTGTAGTGAGAAT+TGG - chr6_3:438208-438227 None:intergenic 30.0%
! GTGATGGTGAATATATAAAG+CGG + chr6_3:438356-438375 Msa0932350:CDS 30.0%
ACATGAAAGAAACAGATTCA+TGG - chr6_3:438469-438488 None:intergenic 30.0%
AAATACTCTCTGAATTTCGA+AGG - chr6_3:438545-438564 None:intergenic 30.0%
ATGTGACATTTACGTAATTC+AGG + chr6_3:438601-438620 Msa0932350:intron 30.0%
TGTTATTCGAAATGGTACAT+TGG + chr6_3:438861-438880 Msa0932350:CDS 30.0%
ACTATGTATCAGAATTTAGC+TGG + chr6_3:439045-439064 Msa0932350:CDS 30.0%
TGTACAGCTAACTCAAATTA+TGG + chr6_3:439444-439463 Msa0932350:three_prime_UTR 30.0%
! TGGATTTTTATTGGAGATGA+TGG + chr6_3:439468-439487 Msa0932350:three_prime_UTR 30.0%
!! TTTTTATTGGAGATGATGGT+TGG + chr6_3:439472-439491 Msa0932350:three_prime_UTR 30.0%
! GGTTCTATTTTGCAATATTC+AGG + chr6_3:439533-439552 Msa0932350:three_prime_UTR 30.0%
TTCTTTCTCGCAAATTTGAT+TGG - chr6_3:439611-439630 None:intergenic 30.0%
!! CTGTTGAATGTTTTTACATG+AGG + chr6_3:439653-439672 Msa0932350:three_prime_UTR 30.0%
AGAAAAATAAGGTGAAGTGG+GGG - chr6_3:434284-434303 None:intergenic 35.0%
GATATTCAGTATCATAAGGG+AGG + chr6_3:434403-434422 Msa0932350:CDS 35.0%
ATTTCAACTATACGTGGTTC+AGG + chr6_3:434642-434661 Msa0932350:intron 35.0%
TGAGTAGATTGATTGTCTAC+TGG - chr6_3:434832-434851 None:intergenic 35.0%
TGTTTATTAGCATCTTTCCC+AGG - chr6_3:434905-434924 None:intergenic 35.0%
ACAGAAAAATAAGACAGCTC+TGG + chr6_3:434922-434941 Msa0932350:CDS 35.0%
! TGATGATGATTGCATAGATG+AGG + chr6_3:434975-434994 Msa0932350:intron 35.0%
GTGGAATTGCATGTAGAAAA+AGG + chr6_3:435031-435050 Msa0932350:intron 35.0%
! TTGCATGTAGAAAAAGGTAC+TGG + chr6_3:435037-435056 Msa0932350:intron 35.0%
CTGGACAGTATGTTGATATT+AGG + chr6_3:435056-435075 Msa0932350:CDS 35.0%
!! TATTAGGTGTTGAAAGCCAA+TGG + chr6_3:435072-435091 Msa0932350:CDS 35.0%
!! ATTAGGTGTTGAAAGCCAAT+GGG + chr6_3:435073-435092 Msa0932350:CDS 35.0%
!! CATTAGGCATTGAGATGTAT+TGG + chr6_3:435658-435677 Msa0932350:intron 35.0%
!! TTAGGCATTGAGATGTATTG+GGG + chr6_3:435660-435679 Msa0932350:intron 35.0%
TGTATTGGGGATTTAATTGC+TGG + chr6_3:435673-435692 Msa0932350:CDS 35.0%
AAATCATTCATTCCATGAGG+AGG + chr6_3:436093-436112 Msa0932350:CDS 35.0%
! GAGGATGTTCATATGTCTTT+TGG + chr6_3:436112-436131 Msa0932350:CDS 35.0%
ACTTTCAGCATGCTATTACA+CGG + chr6_3:436302-436321 Msa0932350:intron 35.0%
! TGAAAATGATGGTGATCTTG+AGG + chr6_3:436337-436356 Msa0932350:CDS 35.0%
AGCTAAAAATGCAATGAAGC+GGG - chr6_3:436532-436551 None:intergenic 35.0%
! GTCTCGACTCTCTAATTTTA+AGG + chr6_3:436798-436817 Msa0932350:intron 35.0%
TCCCTTTGTTAGTAGTTGAA+TGG + chr6_3:436955-436974 Msa0932350:intron 35.0%
! GGAAATTTTGTGACACCATT+TGG + chr6_3:436976-436995 Msa0932350:intron 35.0%
! TTTTGCGTACTGTATCTTGT+TGG + chr6_3:437042-437061 Msa0932350:intron 35.0%
TTTGCGTACTGTATCTTGTT+GGG + chr6_3:437043-437062 Msa0932350:intron 35.0%
!!! GTCAATGCACTTATTTTTGC+TGG + chr6_3:437079-437098 Msa0932350:intron 35.0%
TATAGGGGAAGTAATACACT+AGG + chr6_3:437174-437193 Msa0932350:intron 35.0%
ATAGGGGAAGTAATACACTA+GGG + chr6_3:437175-437194 Msa0932350:intron 35.0%
GCATCAATAAATACTCTCAC+CGG + chr6_3:437261-437280 Msa0932350:intron 35.0%
! GAGAAAGATGAAAAGCATGA+TGG - chr6_3:437348-437367 None:intergenic 35.0%
GCATCGAATGGTGAAATATT+TGG + chr6_3:437709-437728 Msa0932350:CDS 35.0%
! TGGATTAGACTTTCCATCTT+TGG - chr6_3:437756-437775 None:intergenic 35.0%
AGATGGAAAGTCTAATCCAT+CGG + chr6_3:437757-437776 Msa0932350:CDS 35.0%
!!! TTTTGAAATTGCTGGTTACC+TGG + chr6_3:437804-437823 Msa0932350:CDS 35.0%
TCAAGAAGATAAGTAAGGTG+TGG - chr6_3:437875-437894 None:intergenic 35.0%
CTAGCTCAAGAAGATAAGTA+AGG - chr6_3:437880-437899 None:intergenic 35.0%
ATAACAAATCCACAGATAGC+GGG + chr6_3:437969-437988 Msa0932350:intron 35.0%
!!! GAGTTTTGTTTTCGCTAATG+TGG + chr6_3:438075-438094 Msa0932350:CDS 35.0%
!!! GTTTTGTTTTCGCTAATGTG+GGG + chr6_3:438077-438096 Msa0932350:CDS 35.0%
! CGTGAATTTTGTGAAAAGAC+TGG + chr6_3:438237-438256 Msa0932350:CDS 35.0%
! GAATTTTGTGAAAAGACTGG+AGG + chr6_3:438240-438259 Msa0932350:CDS 35.0%
TATTAGAGAACAGATTGTGG+AGG + chr6_3:438267-438286 Msa0932350:CDS 35.0%
CGTATATATACTGAGAGGAA+TGG - chr6_3:438438-438457 None:intergenic 35.0%
TTCCTCTCAGTATATATACG+TGG + chr6_3:438438-438457 Msa0932350:intron 35.0%
ATCCACGTATATATACTGAG+AGG - chr6_3:438443-438462 None:intergenic 35.0%
GACATTTACGTAATTCAGGT+AGG + chr6_3:438605-438624 Msa0932350:intron 35.0%
!!! TCAGGTAGGTTTTTTTCTGA+TGG + chr6_3:438619-438638 Msa0932350:intron 35.0%
ATTCTTGCTGAACAAACCTA+AGG - chr6_3:438665-438684 None:intergenic 35.0%
!! CAGGATCTTGTTATTCGAAA+TGG + chr6_3:438853-438872 Msa0932350:intron 35.0%
!! ATCTCCAAGAAGCATCTAAA+AGG + chr6_3:438977-438996 Msa0932350:CDS 35.0%
TAAAAGGTTGGAGATGCTTA+AGG + chr6_3:438993-439012 Msa0932350:CDS 35.0%
ATTCTGATACATAGTTGCCT+CGG - chr6_3:439040-439059 None:intergenic 35.0%
TCAGAATTTAGCTGGAAAGA+TGG + chr6_3:439053-439072 Msa0932350:CDS 35.0%
CAGCTAACTCAAATTATGGT+TGG + chr6_3:439448-439467 Msa0932350:three_prime_UTR 35.0%
AAAAGGTTACCTCAGCTTCA+CGG - chr6_3:434241-434260 None:intergenic 40.0%
! CTTCAAAGACGACGATCTTT+TGG - chr6_3:434370-434389 None:intergenic 40.0%
CAAAAGATCGTCGTCTTTGA+AGG + chr6_3:434368-434387 Msa0932350:CDS 40.0%
ATTCAGTATCATAAGGGAGG+AGG + chr6_3:434406-434425 Msa0932350:CDS 40.0%
TTCAGTATCATAAGGGAGGA+GGG + chr6_3:434407-434426 Msa0932350:CDS 40.0%
TCGTAGCAATGTATCCAATC+AGG + chr6_3:434572-434591 Msa0932350:CDS 40.0%
ACAGAGTCAACAAACCTGAT+TGG - chr6_3:434589-434608 None:intergenic 40.0%
AGATTGATTGTCTACTGGCA+TGG - chr6_3:434827-434846 None:intergenic 40.0%
! AAATAAGACAGCTCTGGTTC+AGG + chr6_3:434928-434947 Msa0932350:CDS 40.0%
ATAGATGAGGAATCTGCTTC+TGG + chr6_3:434988-435007 Msa0932350:intron 40.0%
ACGTGTCTATACATTGTGAG+AGG - chr6_3:435135-435154 None:intergenic 40.0%
CTCACAATGTATAGACACGT+CGG + chr6_3:435135-435154 Msa0932350:intron 40.0%
AAGCTACTATCACTCATGCA+TGG - chr6_3:435332-435351 None:intergenic 40.0%
CTTGATAAATCGGTGGAACT+TGG + chr6_3:435398-435417 Msa0932350:intron 40.0%
CATAGAACAGAAACTGGGAA+AGG - chr6_3:435521-435540 None:intergenic 40.0%
CTTTCCCAGTTTCTGTTCTA+TGG + chr6_3:435519-435538 Msa0932350:intron 40.0%
GATGCCATAGAACAGAAACT+GGG - chr6_3:435526-435545 None:intergenic 40.0%
TGATGCCATAGAACAGAAAC+TGG - chr6_3:435527-435546 None:intergenic 40.0%
CTTCTTGCTAGCAAAGTTCT+TGG + chr6_3:435715-435734 Msa0932350:CDS 40.0%
TATAGAATTCAGGGCAGGTT+CGG - chr6_3:435755-435774 None:intergenic 40.0%
CTAAGTATAGAATTCAGGGC+AGG - chr6_3:435760-435779 None:intergenic 40.0%
ACATATGAACATCCTCCTCA+TGG - chr6_3:436108-436127 None:intergenic 40.0%
CTATTACACGGTCTTACGTT+GGG + chr6_3:436314-436333 Msa0932350:CDS 40.0%
CTTACGTTGGGTGAAAATGA+TGG + chr6_3:436326-436345 Msa0932350:CDS 40.0%
AAAGGACAATCTCCAATGCA+AGG + chr6_3:436486-436505 Msa0932350:CDS 40.0%
ACAATCTCCAATGCAAGGAA+AGG + chr6_3:436491-436510 Msa0932350:CDS 40.0%
CAATCTCCAATGCAAGGAAA+GGG + chr6_3:436492-436511 Msa0932350:CDS 40.0%
AACATACCCTTTCCTTGCAT+TGG - chr6_3:436501-436520 None:intergenic 40.0%
GCTAAAAATGCAATGAAGCG+GGG - chr6_3:436531-436550 None:intergenic 40.0%
GGGAGACACAATTTACCAAA+TGG - chr6_3:436994-437013 None:intergenic 40.0%
AACTTGCACTAACAAAAGGC+AGG - chr6_3:437296-437315 None:intergenic 40.0%
CCAATAGGTAAACACTGATG+TGG - chr6_3:437509-437528 None:intergenic 40.0%
CCACATCAGTGTTTACCTAT+TGG + chr6_3:437506-437525 Msa0932350:intron 40.0%
! GGTTTTGCGAATTGAAATCG+AGG + chr6_3:437649-437668 Msa0932350:intron 40.0%
AGAACCACTAATGCATCGAA+TGG + chr6_3:437697-437716 Msa0932350:CDS 40.0%
TTCACCATTCGATGCATTAG+TGG - chr6_3:437704-437723 None:intergenic 40.0%
GGATTTCATTGAAGAGGTGA+GGG - chr6_3:437735-437754 None:intergenic 40.0%
TGGATTTCATTGAAGAGGTG+AGG - chr6_3:437736-437755 None:intergenic 40.0%
GATGGAAAGTCTAATCCATC+GGG + chr6_3:437758-437777 Msa0932350:CDS 40.0%
TTATAGTCGTCCAAAAACCC+AGG + chr6_3:438291-438310 Msa0932350:intron 40.0%
! ACTACTGTTACCTGGGTTTT+TGG - chr6_3:438304-438323 None:intergenic 40.0%
! CTCTTCTGCTCTATTTCTTC+TGG - chr6_3:438328-438347 None:intergenic 40.0%
GAAGAAATAGAGCAGAAGAG+AGG + chr6_3:438328-438347 Msa0932350:CDS 40.0%
ATGCTTCTTGGAGATCTCTA+CGG - chr6_3:438972-438991 None:intergenic 40.0%
! CCAACCTTTTAGATGCTTCT+TGG - chr6_3:438984-439003 None:intergenic 40.0%
!! CCAAGAAGCATCTAAAAGGT+TGG + chr6_3:438981-439000 Msa0932350:CDS 40.0%
AAAGGCCAAAATTGAATCCG+AGG + chr6_3:439020-439039 Msa0932350:CDS 40.0%
! AGTTGCCTCGGATTCAATTT+TGG - chr6_3:439028-439047 None:intergenic 40.0%
CTCAAGGCTATTGTATGCAT+CGG - chr6_3:439100-439119 None:intergenic 40.0%
GTTGGAGATTAGATTGCTCA+AGG - chr6_3:439116-439135 None:intergenic 40.0%
TGAGCAATCTAATCTCCAAC+TGG + chr6_3:439116-439135 Msa0932350:CDS 40.0%
TAATCTCCAACTGGAGAATG+AGG + chr6_3:439125-439144 Msa0932350:CDS 40.0%
AATGATCTGCTTGTATGCCT+CGG + chr6_3:439247-439266 Msa0932350:three_prime_UTR 40.0%
TAGACTTAGTGCTAGGTTGT+TGG + chr6_3:439291-439310 Msa0932350:three_prime_UTR 40.0%
GATGTTGACCAACTACTTGA+AGG + chr6_3:439325-439344 Msa0932350:three_prime_UTR 40.0%
! TTGATTGGCTAACACGACAA+AGG - chr6_3:439596-439615 None:intergenic 40.0%
CAGGTGAGTAAGAAGCAGTA+AGG - chr6_3:434216-434235 None:intergenic 45.0%
AAAGGTTACCTCAGCTTCAC+GGG - chr6_3:434240-434259 None:intergenic 45.0%
GTACTACTCAGAGAGACCAT+AGG + chr6_3:434664-434683 Msa0932350:CDS 45.0%
GTGGAACTTGGAGTCTACTT+GGG + chr6_3:435410-435429 Msa0932350:intron 45.0%
TGCTAGCAAAGTTCTTGGAG+AGG + chr6_3:435720-435739 Msa0932350:CDS 45.0%
GCTATTACACGGTCTTACGT+TGG + chr6_3:436313-436332 Msa0932350:CDS 45.0%
! TACCGACACAGGAAAAGCAT+GGG - chr6_3:437014-437033 None:intergenic 45.0%
!! CTTTTCCTGTGTCGGTAGTT+GGG + chr6_3:437017-437036 Msa0932350:intron 45.0%
AAAAGGCAGGACTAGATCTC+CGG - chr6_3:437283-437302 None:intergenic 45.0%
AGGTAAACACTGATGTGGCA+TGG - chr6_3:437504-437523 None:intergenic 45.0%
GCAGCTCCTAATGATTGCAT+GGG - chr6_3:437677-437696 None:intergenic 45.0%
TGCAGCTCCTAATGATTGCA+TGG - chr6_3:437678-437697 None:intergenic 45.0%
TGAGCGTATGAATTTCCCGA+TGG - chr6_3:437776-437795 None:intergenic 45.0%
! GGTTTTGCAGCAGTTGTGTT+GGG + chr6_3:437932-437951 Msa0932350:intron 45.0%
TTCTGGCACTACTGTTACCT+GGG - chr6_3:438311-438330 None:intergenic 45.0%
!! GAAGCAACACTCTGAGATAC+AGG + chr6_3:438396-438415 Msa0932350:CDS 45.0%
! TAAGAAGTGTGTGGAACTGC+AGG + chr6_3:438733-438752 Msa0932350:intron 45.0%
AACTACTACCTGTCTTAGCC+AGG - chr6_3:438894-438913 None:intergenic 45.0%
CACTTACTCTTTGCTCAGAC+TGG - chr6_3:438918-438937 None:intergenic 45.0%
CAGTCTGAGCAAAGAGTAAG+TGG + chr6_3:438916-438935 Msa0932350:CDS 45.0%
TCTGAGCAAAGAGTAAGTGG+AGG + chr6_3:438919-438938 Msa0932350:CDS 45.0%
! CTCTACGGAGTGTCTCTATT+TGG - chr6_3:438957-438976 None:intergenic 45.0%
GGAGATGCTTAAGGCAGAAA+AGG + chr6_3:439002-439021 Msa0932350:CDS 45.0%
CTTTCACCTCATTCTCCAGT+TGG - chr6_3:439134-439153 None:intergenic 45.0%
!! AGAATGAGGTGAAAGCACTG+AGG + chr6_3:439139-439158 Msa0932350:CDS 45.0%
!! GAATGAGGTGAAAGCACTGA+GGG + chr6_3:439140-439159 Msa0932350:CDS 45.0%
!! AATGAGGTGAAAGCACTGAG+GGG + chr6_3:439141-439160 Msa0932350:CDS 45.0%
! GAAGCAAGAAGAAGCTCTGA+AGG + chr6_3:439207-439226 Msa0932350:CDS 45.0%
ATGATCTGCTTGTATGCCTC+GGG + chr6_3:439248-439267 Msa0932350:three_prime_UTR 45.0%
AGGTGGATAGACTTAGTGCT+AGG + chr6_3:439284-439303 Msa0932350:three_prime_UTR 45.0%
TAGTGCTAGGTTGTTGGAGT+TGG + chr6_3:439297-439316 Msa0932350:three_prime_UTR 45.0%
AGTGCTAGGTTGTTGGAGTT+GGG + chr6_3:439298-439317 Msa0932350:three_prime_UTR 45.0%
! GACCAACTACTTGAAGGCAT+TGG + chr6_3:439331-439350 Msa0932350:three_prime_UTR 45.0%
CTCCAATGCCTTCAAGTAGT+TGG - chr6_3:439336-439355 None:intergenic 45.0%
CTTCAAGACACAGTTCTTGC+TGG + chr6_3:439512-439531 Msa0932350:three_prime_UTR 45.0%
AGGGAGGAGGGAAATTCAGA+TGG + chr6_3:434419-434438 Msa0932350:CDS 50.0%
GAGGAGGGAAATTCAGATGG+TGG + chr6_3:434422-434441 Msa0932350:CDS 50.0%
! AGATGGTGGTGTAGTTGTGC+AGG + chr6_3:434436-434455 Msa0932350:CDS 50.0%
GCTACTAAAGGGAGGTTCTG+AGG + chr6_3:434874-434893 Msa0932350:CDS 50.0%
GAACTGCAACAGGTACCCAT+TGG - chr6_3:435091-435110 None:intergenic 50.0%
GGTGGAACTTGGAGTCTACT+TGG + chr6_3:435409-435428 Msa0932350:intron 50.0%
! CTCCCATGCTTTTCCTGTGT+CGG + chr6_3:437009-437028 Msa0932350:intron 50.0%
CTACCGACACAGGAAAAGCA+TGG - chr6_3:437015-437034 None:intergenic 50.0%
!! GCTTTTCCTGTGTCGGTAGT+TGG + chr6_3:437016-437035 Msa0932350:intron 50.0%
AAAAGCCCAACTACCGACAC+AGG - chr6_3:437025-437044 None:intergenic 50.0%
GGGGAAGTAATACACTAGGG+AGG + chr6_3:437178-437197 Msa0932350:intron 50.0%
! GAGGCACCCATGCAATCATT+AGG + chr6_3:437668-437687 Msa0932350:CDS 50.0%
AGGAAGCAGTGCACTGCATT+GGG - chr6_3:437842-437861 None:intergenic 50.0%
TAGGAAGCAGTGCACTGCAT+TGG - chr6_3:437843-437862 None:intergenic 50.0%
TAAGGTGTGGTCGAGCATCT+AGG - chr6_3:437862-437881 None:intergenic 50.0%
! GGGTTTTGCAGCAGTTGTGT+TGG + chr6_3:437931-437950 Msa0932350:intron 50.0%
TGCATCTTTCCCGCTATCTG+TGG - chr6_3:437981-438000 None:intergenic 50.0%
GAGATCTTCAGCAGCTAGCA+TGG + chr6_3:438126-438145 Msa0932350:CDS 50.0%
CTTCTGGCACTACTGTTACC+TGG - chr6_3:438312-438331 None:intergenic 50.0%
CAGAAGAGAGGCGAAAGTGA+TGG + chr6_3:438340-438359 Msa0932350:CDS 50.0%
TCGAAATGGTACATTGGCCG+AGG + chr6_3:438867-438886 Msa0932350:CDS 50.0%
GCAAAGAGTAAGTGGAGGCA+TGG + chr6_3:438924-438943 Msa0932350:CDS 50.0%
AGAAGGACCCTCAACATTCC+CGG + chr6_3:439164-439183 Msa0932350:CDS 50.0%
TCCACATCCGGGAATGTTGA+GGG - chr6_3:439174-439193 None:intergenic 50.0%
!! GAAGCTCTGAAGGAGAGTGA+AGG + chr6_3:439217-439236 Msa0932350:CDS 50.0%
TAGGTTGTTGGAGTTGGGAG+AGG + chr6_3:439303-439322 Msa0932350:three_prime_UTR 50.0%
!! GAAGGCATTGGAGATGATGC+TGG + chr6_3:439343-439362 Msa0932350:three_prime_UTR 50.0%
TGCTGAAGATGTCGAAGACG+AGG + chr6_3:439369-439388 Msa0932350:three_prime_UTR 50.0%
TTACCTCAGCTTCACGGGTC+AGG - chr6_3:434235-434254 None:intergenic 55.0%
GTGGTGTAGTTGTGCAGGTG+AGG + chr6_3:434441-434460 Msa0932350:intron 55.0%
GTAGTTGTGCAGGTGAGGCA+TGG + chr6_3:434446-434465 Msa0932350:intron 55.0%
!! GAGGTTCTGAGGCTGATCCT+GGG + chr6_3:434885-434904 Msa0932350:CDS 55.0%
ACCTGTTGCAGTTCGCTGTG+CGG + chr6_3:435097-435116 Msa0932350:CDS 55.0%
GCGTAGACGCTAGCATTGCT+TGG - chr6_3:436051-436070 None:intergenic 55.0%
ATTGGGGCAATCTGCTAGCC+AGG - chr6_3:437825-437844 None:intergenic 55.0%
GGAAGCAGTGCACTGCATTG+GGG - chr6_3:437841-437860 None:intergenic 55.0%
ACCTGTCTTAGCCAGGTCCT+CGG - chr6_3:438887-438906 None:intergenic 55.0%
!! GTGAAAGCACTGAGGGGAGA+AGG + chr6_3:439147-439166 Msa0932350:CDS 55.0%
ACCCTCAACATTCCCGGATG+TGG + chr6_3:439170-439189 Msa0932350:CDS 55.0%
CTCCACATCCGGGAATGTTG+AGG - chr6_3:439175-439194 None:intergenic 55.0%
CTCAACATTCCCGGATGTGG+AGG + chr6_3:439173-439192 Msa0932350:CDS 55.0%
! CCTTGCTTTGTTCTTGCCCG+AGG - chr6_3:439267-439286 None:intergenic 55.0%
CCTCGGGCAAGAACAAAGCA+AGG + chr6_3:439264-439283 Msa0932350:three_prime_UTR 55.0%
CGGGCAAGAACAAAGCAAGG+TGG + chr6_3:439267-439286 Msa0932350:three_prime_UTR 55.0%
TCACCTGACCCGTGAAGCTG+AGG + chr6_3:434229-434248 Msa0932350:CDS 60.0%
!! GGAGGTTCTGAGGCTGATCC+TGG + chr6_3:434884-434903 Msa0932350:CDS 60.0%
ACCGCACAGCGAACTGCAAC+AGG - chr6_3:435101-435120 None:intergenic 60.0%
AGTTCTTGGAGAGGAGCCGC+AGG + chr6_3:435729-435748 Msa0932350:CDS 60.0%
TGGTACATTGGCCGAGGACC+TGG + chr6_3:438873-438892 Msa0932350:CDS 60.0%
TTCAGGGCAGGTTCGGCCTG+CGG - chr6_3:435748-435767 None:intergenic 65.0%
GCCGAGGACCTGGCTAAGAC+AGG + chr6_3:438883-438902 Msa0932350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 434197 439721 434197 ID=Msa0932350;Name=Msa0932350
chr6_3 mRNA 434197 439721 434197 ID=Msa0932350-mRNA-1;Parent=Msa0932350;Name=Msa0932350-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.84|0.71|1|0.84|0.78|14|485|611
chr6_3 exon 434197 434250 434197 ID=Msa0932350-mRNA-1:exon:161;Parent=Msa0932350-mRNA-1
chr6_3 exon 434362 434457 434362 ID=Msa0932350-mRNA-1:exon:162;Parent=Msa0932350-mRNA-1
chr6_3 exon 434543 434593 434543 ID=Msa0932350-mRNA-1:exon:163;Parent=Msa0932350-mRNA-1
chr6_3 exon 434664 434750 434664 ID=Msa0932350-mRNA-1:exon:164;Parent=Msa0932350-mRNA-1
chr6_3 exon 434836 434949 434836 ID=Msa0932350-mRNA-1:exon:165;Parent=Msa0932350-mRNA-1
chr6_3 exon 435047 435118 435047 ID=Msa0932350-mRNA-1:exon:166;Parent=Msa0932350-mRNA-1
chr6_3 exon 435664 435849 435664 ID=Msa0932350-mRNA-1:exon:167;Parent=Msa0932350-mRNA-1
chr6_3 exon 436034 436137 436034 ID=Msa0932350-mRNA-1:exon:168;Parent=Msa0932350-mRNA-1
chr6_3 exon 436310 436358 436310 ID=Msa0932350-mRNA-1:exon:169;Parent=Msa0932350-mRNA-1
chr6_3 exon 436448 436513 436448 ID=Msa0932350-mRNA-1:exon:170;Parent=Msa0932350-mRNA-1
chr6_3 exon 437650 437898 437650 ID=Msa0932350-mRNA-1:exon:171;Parent=Msa0932350-mRNA-1
chr6_3 exon 438067 438288 438067 ID=Msa0932350-mRNA-1:exon:172;Parent=Msa0932350-mRNA-1
chr6_3 exon 438313 438417 438313 ID=Msa0932350-mRNA-1:exon:173;Parent=Msa0932350-mRNA-1
chr6_3 exon 438856 439721 438856 ID=Msa0932350-mRNA-1:exon:174;Parent=Msa0932350-mRNA-1
chr6_3 CDS 434197 434250 434197 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 434362 434457 434362 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 434543 434593 434543 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 434664 434750 434664 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 434836 434949 434836 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 435047 435118 435047 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 435664 435849 435664 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 436034 436137 436034 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 436310 436358 436310 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 436448 436513 436448 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 437650 437898 437650 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 438067 438288 438067 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 438313 438417 438313 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 CDS 438856 439236 438856 ID=Msa0932350-mRNA-1:cds;Parent=Msa0932350-mRNA-1
chr6_3 three_prime_UTR 439237 439721 439237 ID=Msa0932350-mRNA-1:three_prime_utr;Parent=Msa0932350-mRNA-1
Gene Sequence

>Msa0932350

GTGATAAGAAATGAGGCCTTACTGCTTCTTACTCACCTGACCCGTGAAGCTGAGGAGATCCAAAAGATCGTCGTCTTTGAAGGTGCATATGAGAAGATATTCAGTATCATAAGGGAGGAGGGAAATTCAGATGGTGGTGTAGTTGTGCAGGACTGCCTTGAATTGCTGAACAATTTGATTCGTAGCAATGTATCCAATCAGGTACTACTCAGAGAGACCATAGGATTTGATTCATTGATATTGATTTTGAAGCTGAGAGGAAGTTCTTATTCTTTTACTCAACAAAAGACAATCAATCTACTCAGTGCATTAGAAACCATTAAATTGCTACTAAAGGGAGGTTCTGAGGCTGATCCTGGGAAAGATGCTAATAAACAGAAAAATAAGACAGCTCTGGTTCAGAAAAAGGTACTGGACAGTATGTTGATATTAGGTGTTGAAAGCCAATGGGTACCTGTTGCAGTTCGCTGTGCGGCATTGAGATGTATTGGGGATTTAATTGCTGGAGATTCAAAGAATCTCGATCTTCTTGCTAGCAAAGTTCTTGGAGAGGAGCCGCAGGCCGAACCTGCCCTGAATTCTATACTTAGAATAATTTTGAGGTCTTCTAGCATGCAAGAGTTCATTGCCGCTGATGATGTTTTCAAAAACTTTTGTGAGAAAAATGCTGATGGCCAAGCAATGCTAGCGTCTACGCTAATTCCACAACCATATTCCATAAATCATTCATTCCATGAGGAGGATGTTCATATGTCTTTTGGAAGCATGCTATTACACGGTCTTACGTTGGGTGAAAATGATGGTGATCTTGAGACTTGTAGCAGAGCTGCTAGTGTTCTATCTCATATATTAAAGGACAATCTCCAATGCAAGGAAAGGGTTTTGCGAATTGAAATCGAGGCACCCATGCAATCATTAGGAGCTGCAGAACCACTAATGCATCGAATGGTGAAATATTTGGCCCTCACCTCTTCAATGAAATCCAAAGATGGAAAGTCTAATCCATCGGGAAATTCATACGCTCAAGCTATTATTTTGAAATTGCTGGTTACCTGGCTAGCAGATTGCCCCAATGCAGTGCACTGCTTCCTAGATGCTCGACCACACCTTACTTATCTTCTTGAGCTAATGCACAAGAGTTTTGTTTTCGCTAATGTGGGGTCATCATTCACACATAGATCGTTCTCGAGATCTTCAGCAGCTAGCATGGCAGATATTCAAGATGTAGATGAGAATGATTTGTCAGAAAAGAAAAATACAGATGATCCAATTCTCACTACAATTTTGGATTCTTACTTCGTGAATTTTGTGAAAAGACTGGAGGCAAATATTAGAGAACAGATTGTGGAGGTAACAGTAGTGCCAGAAGAAATAGAGCAGAAGAGAGGCGAAAGTGATGGTGAATATATAAAGCGGCTGAAAGCTTTCGTTGAGAAGCAACACTCTGAGATACAGGATCTTGTTATTCGAAATGGTACATTGGCCGAGGACCTGGCTAAGACAGGTAGTAGTTTCCAGTCTGAGCAAAGAGTAAGTGGAGGCATGGACAGAGTCCAAATAGAGACACTCCGTAGAGATCTCCAAGAAGCATCTAAAAGGTTGGAGATGCTTAAGGCAGAAAAGGCCAAAATTGAATCCGAGGCAACTATGTATCAGAATTTAGCTGGAAAGATGGAATCTGATCTACAGAGTCTGTCCGATGCATACAATAGCCTTGAGCAATCTAATCTCCAACTGGAGAATGAGGTGAAAGCACTGAGGGGAGAAGGACCCTCAACATTCCCGGATGTGGAGGCAATAAAAGCTGAAGCAAGAAGAAGCTCTGAAGGAGAGTGA

Protein sequence

>Msa0932350

VIRNEALLLLTHLTREAEEIQKIVVFEGAYEKIFSIIREEGNSDGGVVVQDCLELLNNLIRSNVSNQVLLRETIGFDSLILILKLRGSSYSFTQQKTINLLSALETIKLLLKGGSEADPGKDANKQKNKTALVQKKVLDSMLILGVESQWVPVAVRCAALRCIGDLIAGDSKNLDLLASKVLGEEPQAEPALNSILRIILRSSSMQEFIAADDVFKNFCEKNADGQAMLASTLIPQPYSINHSFHEEDVHMSFGSMLLHGLTLGENDGDLETCSRAASVLSHILKDNLQCKERVLRIEIEAPMQSLGAAEPLMHRMVKYLALTSSMKSKDGKSNPSGNSYAQAIILKLLVTWLADCPNAVHCFLDARPHLTYLLELMHKSFVFANVGSSFTHRSFSRSSAASMADIQDVDENDLSEKKNTDDPILTTILDSYFVNFVKRLEANIREQIVEVTVVPEEIEQKRGESDGEYIKRLKAFVEKQHSEIQDLVIRNGTLAEDLAKTGSSFQSEQRVSGGMDRVQIETLRRDLQEASKRLEMLKAEKAKIESEATMYQNLAGKMESDLQSLSDAYNSLEQSNLQLENEVKALRGEGPSTFPDVEAIKAEARRSSEGE*