AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258310 MtrunA17_Chr2g0321081 98.851 174 2 0 1 174 1 174 1.37e-123 345
Msa0258310 MtrunA17_Chr7g0265921 67.742 155 48 1 20 174 14 166 8.67e-62 188
Msa0258310 MtrunA17_Chr1g0198271 56.329 158 68 1 17 173 11 168 4.65e-51 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258310 AT2G27740.1 59.649 171 68 1 1 171 1 170 4.84e-68 205
Msa0258310 AT2G36410.2 67.647 136 44 0 38 173 57 192 2.09e-61 189
Msa0258310 AT3G52920.2 68.889 135 42 0 38 172 28 162 4.09e-61 187
Msa0258310 AT3G09980.1 70.139 144 43 0 31 174 35 178 9.39e-60 184
Msa0258310 AT2G36410.1 66.187 139 44 1 38 173 57 195 2.51e-59 183
Msa0258310 AT3G52920.1 67.391 138 42 1 38 172 28 165 6.33e-59 182
Msa0258310 AT5G03660.1 66.418 134 45 0 38 171 36 169 2.24e-49 157
Msa0258310 AT3G52900.1 51.974 152 73 0 23 174 13 164 1.52e-48 155
Msa0258310 AT2G36355.1 51.299 154 69 2 22 173 5 154 1.73e-44 144
Msa0258310 AT2G27740.2 53.659 123 56 1 1 123 1 122 1.16e-41 136
Msa0258310 AT5G03660.3 63.793 116 42 0 38 153 36 151 8.83e-40 132
Msa0258310 AT2G36410.3 66.279 86 29 0 38 123 57 142 3.30e-35 120
Msa0258310 AT5G03660.2 53.731 134 40 1 38 171 36 147 1.00e-31 112
Msa0258310 AT2G36355.3 62.651 83 31 0 91 173 1 83 1.19e-30 107
Msa0258310 AT2G36355.2 61.628 86 33 0 88 173 27 112 1.47e-30 107
Msa0258310 AT2G36355.4 44.144 111 55 3 22 130 5 110 3.17e-22 87.0

Find 41 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCTAACCTCCACTAATT+TGG 0.202427 2_2:-54540300 None:intergenic
AGAAATTGAGAGAAGAAAAT+TGG 0.229998 2_2:+54538940 Msa0258310:CDS
TTCTCGAATTCGCCGTAATT+AGG 0.276546 2_2:+54540683 Msa0258310:three_prime_UTR
ATTGCAACATCCTTCCTCTT+TGG 0.283049 2_2:-54539610 None:intergenic
TTTCATCTCTTCTTGGACTC+TGG 0.297684 2_2:-54538865 None:intergenic
GGGTCAAACCTGCCAGAAAA+AGG 0.317850 2_2:+54539678 Msa0258310:CDS
GTGCAACATGTGAAGAATTC+AGG 0.351410 2_2:+54538827 Msa0258310:CDS
TCTAGCAATGTTTAGAGAAA+AGG 0.359449 2_2:+54538913 Msa0258310:CDS
TTCTGGCAGGTTTGACCCAA+TGG 0.366095 2_2:-54539673 None:intergenic
ACTCTTCTTTCCTCTACCTT+AGG 0.366871 2_2:-54538671 None:intergenic
AATTAGGATATTTGACTGTT+TGG 0.389046 2_2:+54540699 Msa0258310:three_prime_UTR
GAGTCCAAGAAGAGATGAAA+AGG 0.433573 2_2:+54538868 Msa0258310:CDS
AACAAAGAGTTGAAGCCATT+GGG 0.443322 2_2:+54539658 Msa0258310:CDS
AGAAATTGCATAGGAGATTG+AGG 0.462032 2_2:+54539576 Msa0258310:intron
TTTAAAAGAAAAGAGAAAAC+AGG 0.464117 2_2:+54538701 Msa0258310:five_prime_UTR
GAGGATAAGGATGAAGAAGC+TGG 0.468797 2_2:+54540450 Msa0258310:CDS
GATAAAGTTCATGCTCATCT+TGG 0.470535 2_2:+54538971 Msa0258310:CDS
TCAACTTGTTACCAAATTAG+TGG 0.474598 2_2:+54540289 Msa0258310:CDS
ACAGTCAAATATCCTAATTA+CGG 0.480380 2_2:-54540695 None:intergenic
GCTAGTGAAAGTAGCCTTGT+GGG 0.485200 2_2:+54540513 Msa0258310:three_prime_UTR
GAAATTGCATAGGAGATTGA+GGG 0.490039 2_2:+54539577 Msa0258310:intron
TAACAAAGAGTTGAAGCCAT+TGG 0.493465 2_2:+54539657 Msa0258310:CDS
TTTATAAGCACCTAAGGTAG+AGG 0.505239 2_2:+54538661 Msa0258310:five_prime_UTR
AGGATATTTGACTGTTTGGT+AGG 0.507929 2_2:+54540703 Msa0258310:three_prime_UTR
TCATCTTGGTCGAGTCGAAA+AGG 0.517837 2_2:+54538985 Msa0258310:CDS
TGACTGAAAGTGAGAGGATA+AGG 0.518680 2_2:+54540437 Msa0258310:CDS
AAGAAGAGATGAAAAGGAAG+AGG 0.527146 2_2:+54538874 Msa0258310:CDS
AATTGAGAGAAGAAAATTGG+AGG 0.531288 2_2:+54538943 Msa0258310:CDS
CGAAAAGGAAACAAAGCGAT+TGG 0.535815 2_2:+54539000 Msa0258310:CDS
AAAATTCTTATTATTTGATG+TGG 0.550591 2_2:+54540554 Msa0258310:three_prime_UTR
GAAAACAGGTAAGAACAGTA+AGG 0.554400 2_2:+54538715 Msa0258310:five_prime_UTR
GGAATACAATGAAGCTCTTG+AGG 0.578029 2_2:+54540238 Msa0258310:CDS
AATTCAGGTAAGAGCAGCAA+TGG 0.586238 2_2:+54538760 Msa0258310:exon
TGCTAGTGAAAGTAGCCTTG+TGG 0.611246 2_2:+54540512 Msa0258310:three_prime_UTR
TTTCACAGATCCAAAGAGGA+AGG 0.618763 2_2:+54539600 Msa0258310:CDS
AGGGTTTCACAGATCCAAAG+AGG 0.622777 2_2:+54539596 Msa0258310:CDS
AGCTTGTGACTGAAAGTGAG+AGG 0.623994 2_2:+54540431 Msa0258310:intron
ACTTGTTACCAAATTAGTGG+AGG 0.627774 2_2:+54540292 Msa0258310:CDS
AACATCACACTGAACCCACA+AGG 0.656050 2_2:-54540527 None:intergenic
GATAAGGATGAAGAAGCTGG+AGG 0.694341 2_2:+54540453 Msa0258310:CDS
AGTTAGAAAGAAGATAGACA+TGG 0.715757 2_2:+54539633 Msa0258310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTAAAAACAATGTA+CGG - chr2_2:54540133-54540152 None:intergenic 10.0%
!!! TATTTTTTAAAAACAATGTA+CGG - chr2_2:54540133-54540152 None:intergenic 10.0%
!! TTATAATATCTTTACAACAT+AGG + chr2_2:54539748-54539767 Msa0258310:intron 15.0%
!! GAAATTAAAGCAAATAATTA+AGG - chr2_2:54539855-54539874 None:intergenic 15.0%
!!! AATTATTTGCTTTAATTTCT+TGG + chr2_2:54539856-54539875 Msa0258310:intron 15.0%
!! ATATGTTTATTTAGTTGTTT+AGG + chr2_2:54539919-54539938 Msa0258310:intron 15.0%
!!! TTGTGAAACTATATATTTTT+GGG + chr2_2:54540203-54540222 Msa0258310:intron 15.0%
!! AAAATTCTTATTATTTGATG+TGG + chr2_2:54540554-54540573 Msa0258310:three_prime_UTR 15.0%
!! TTATAATATCTTTACAACAT+AGG + chr2_2:54539748-54539767 Msa0258310:intron 15.0%
!! GAAATTAAAGCAAATAATTA+AGG - chr2_2:54539855-54539874 None:intergenic 15.0%
!!! AATTATTTGCTTTAATTTCT+TGG + chr2_2:54539856-54539875 Msa0258310:intron 15.0%
!! ATATGTTTATTTAGTTGTTT+AGG + chr2_2:54539919-54539938 Msa0258310:intron 15.0%
!!! TTGTGAAACTATATATTTTT+GGG + chr2_2:54540203-54540222 Msa0258310:intron 15.0%
!! AAAATTCTTATTATTTGATG+TGG + chr2_2:54540554-54540573 Msa0258310:three_prime_UTR 15.0%
!! TTTAAAAGAAAAGAGAAAAC+AGG + chr2_2:54538701-54538720 Msa0258310:five_prime_UTR 20.0%
!!! TTGTTTGTTTGGATTTTTAT+TGG + chr2_2:54539090-54539109 Msa0258310:intron 20.0%
!!! TTCATTTGTTTGGTTTTTAT+TGG + chr2_2:54539147-54539166 Msa0258310:intron 20.0%
!! TTTGATATTGTAGAAAATCA+CGG + chr2_2:54539243-54539262 Msa0258310:intron 20.0%
!! CAAACAAAGATTGTTTATAA+TGG - chr2_2:54539556-54539575 None:intergenic 20.0%
!! ATTAAAGCAAATAATTAAGG+TGG - chr2_2:54539852-54539871 None:intergenic 20.0%
!!! CTTTTGATGACATAATATAT+GGG - chr2_2:54539883-54539902 None:intergenic 20.0%
!!! CTTGTGAAACTATATATTTT+TGG + chr2_2:54540202-54540221 Msa0258310:intron 20.0%
!!! TGTGAAACTATATATTTTTG+GGG + chr2_2:54540204-54540223 Msa0258310:intron 20.0%
!! AAAAAAGAAATATGTTAGCT+AGG - chr2_2:54540376-54540395 None:intergenic 20.0%
!! TTTAAAAGAAAAGAGAAAAC+AGG + chr2_2:54538701-54538720 Msa0258310:five_prime_UTR 20.0%
!!! TTGTTTGTTTGGATTTTTAT+TGG + chr2_2:54539090-54539109 Msa0258310:intron 20.0%
!!! TTCATTTGTTTGGTTTTTAT+TGG + chr2_2:54539147-54539166 Msa0258310:intron 20.0%
!! TTTGATATTGTAGAAAATCA+CGG + chr2_2:54539243-54539262 Msa0258310:intron 20.0%
!! CAAACAAAGATTGTTTATAA+TGG - chr2_2:54539556-54539575 None:intergenic 20.0%
!! ATTAAAGCAAATAATTAAGG+TGG - chr2_2:54539852-54539871 None:intergenic 20.0%
!!! CTTTTGATGACATAATATAT+GGG - chr2_2:54539883-54539902 None:intergenic 20.0%
!!! CTTGTGAAACTATATATTTT+TGG + chr2_2:54540202-54540221 Msa0258310:intron 20.0%
!!! TGTGAAACTATATATTTTTG+GGG + chr2_2:54540204-54540223 Msa0258310:intron 20.0%
!! AAAAAAGAAATATGTTAGCT+AGG - chr2_2:54540376-54540395 None:intergenic 20.0%
!!! TTTTGTTTTATAAGCACCTA+AGG + chr2_2:54538655-54538674 Msa0258310:five_prime_UTR 25.0%
! AGAAATTGAGAGAAGAAAAT+TGG + chr2_2:54538940-54538959 Msa0258310:CDS 25.0%
! ATGATGTTTCATTGTTTGTT+TGG + chr2_2:54539079-54539098 Msa0258310:intron 25.0%
! TGTTCAAAGTTTCATTTGTT+TGG + chr2_2:54539137-54539156 Msa0258310:intron 25.0%
! ATTTCAACGTTATATTGTCA+CGG - chr2_2:54539314-54539333 None:intergenic 25.0%
! TTACATTTGATCTATAGTGA+AGG + chr2_2:54539397-54539416 Msa0258310:intron 25.0%
! TATCAAAAGCAAAACACATT+GGG - chr2_2:54539798-54539817 None:intergenic 25.0%
! ATATCAAAAGCAAAACACAT+TGG - chr2_2:54539799-54539818 None:intergenic 25.0%
!!! CCTTTTGATGACATAATATA+TGG - chr2_2:54539884-54539903 None:intergenic 25.0%
! CCATATATTATGTCATCAAA+AGG + chr2_2:54539881-54539900 Msa0258310:intron 25.0%
! TATATTATGTCATCAAAAGG+AGG + chr2_2:54539884-54539903 Msa0258310:intron 25.0%
! CAATGAGAAAAACAAAGAAA+AGG + chr2_2:54540265-54540284 Msa0258310:CDS 25.0%
!!! AATGTATTTTGCTGACTTTA+GGG + chr2_2:54540591-54540610 Msa0258310:three_prime_UTR 25.0%
!! TGTTTAATGCACACTTTTAT+TGG - chr2_2:54540625-54540644 None:intergenic 25.0%
! ACAGTCAAATATCCTAATTA+CGG - chr2_2:54540698-54540717 None:intergenic 25.0%
! AATTAGGATATTTGACTGTT+TGG + chr2_2:54540699-54540718 Msa0258310:three_prime_UTR 25.0%
!!! TTTTGTTTTATAAGCACCTA+AGG + chr2_2:54538655-54538674 Msa0258310:five_prime_UTR 25.0%
! AGAAATTGAGAGAAGAAAAT+TGG + chr2_2:54538940-54538959 Msa0258310:CDS 25.0%
! ATGATGTTTCATTGTTTGTT+TGG + chr2_2:54539079-54539098 Msa0258310:intron 25.0%
! TGTTCAAAGTTTCATTTGTT+TGG + chr2_2:54539137-54539156 Msa0258310:intron 25.0%
! ATTTCAACGTTATATTGTCA+CGG - chr2_2:54539314-54539333 None:intergenic 25.0%
! TTACATTTGATCTATAGTGA+AGG + chr2_2:54539397-54539416 Msa0258310:intron 25.0%
! TATCAAAAGCAAAACACATT+GGG - chr2_2:54539798-54539817 None:intergenic 25.0%
! ATATCAAAAGCAAAACACAT+TGG - chr2_2:54539799-54539818 None:intergenic 25.0%
!!! CCTTTTGATGACATAATATA+TGG - chr2_2:54539884-54539903 None:intergenic 25.0%
! CCATATATTATGTCATCAAA+AGG + chr2_2:54539881-54539900 Msa0258310:intron 25.0%
! TATATTATGTCATCAAAAGG+AGG + chr2_2:54539884-54539903 Msa0258310:intron 25.0%
! CAATGAGAAAAACAAAGAAA+AGG + chr2_2:54540265-54540284 Msa0258310:CDS 25.0%
!!! AATGTATTTTGCTGACTTTA+GGG + chr2_2:54540591-54540610 Msa0258310:three_prime_UTR 25.0%
!! TGTTTAATGCACACTTTTAT+TGG - chr2_2:54540625-54540644 None:intergenic 25.0%
! ACAGTCAAATATCCTAATTA+CGG - chr2_2:54540698-54540717 None:intergenic 25.0%
! AATTAGGATATTTGACTGTT+TGG + chr2_2:54540699-54540718 Msa0258310:three_prime_UTR 25.0%
! AAAAAGTGTGTTGAGAATTC+AGG + chr2_2:54538745-54538764 Msa0258310:five_prime_UTR 30.0%
! TGCTGATCATATGATCTTTT+TGG - chr2_2:54538791-54538810 None:intergenic 30.0%
TCTAGCAATGTTTAGAGAAA+AGG + chr2_2:54538913-54538932 Msa0258310:CDS 30.0%
AATTGAGAGAAGAAAATTGG+AGG + chr2_2:54538943-54538962 Msa0258310:CDS 30.0%
CAAATTCAGTGTTTGTTTAC+TGG - chr2_2:54539046-54539065 None:intergenic 30.0%
CAATATCAAAGATTACTACG+TGG - chr2_2:54539233-54539252 None:intergenic 30.0%
ACAATATAACGTTGAAATCG+CGG + chr2_2:54539316-54539335 Msa0258310:intron 30.0%
!! TTTTAAAAAACGGTCTGCAA+CGG - chr2_2:54539351-54539370 None:intergenic 30.0%
!!! CTGGTCAAGGTTTTAAAAAA+CGG - chr2_2:54539361-54539380 None:intergenic 30.0%
TAAAGCTAATGCTTAAATCC+TGG - chr2_2:54539380-54539399 None:intergenic 30.0%
! CTTTGTTTGAGAAATTGCAT+AGG + chr2_2:54539567-54539586 Msa0258310:intron 30.0%
AGTTAGAAAGAAGATAGACA+TGG + chr2_2:54539633-54539652 Msa0258310:CDS 30.0%
! TGGAAAATCTAACCTTTTTC+TGG - chr2_2:54539693-54539712 None:intergenic 30.0%
AACAGTTAGTACTAAACAGT+TGG - chr2_2:54539713-54539732 None:intergenic 30.0%
! TACAACATAGGATTTGTTCA+AGG + chr2_2:54539760-54539779 Msa0258310:intron 30.0%
AATTTGAATTCCGTCTGTTT+CGG - chr2_2:54540056-54540075 None:intergenic 30.0%
TTAAAAACAATGTACGGAAG+AGG - chr2_2:54540127-54540146 None:intergenic 30.0%
!!! CTATATATTTTTGGGGTTAC+AGG + chr2_2:54540211-54540230 Msa0258310:intron 30.0%
!! TCAACTTGTTACCAAATTAG+TGG + chr2_2:54540289-54540308 Msa0258310:CDS 30.0%
! CTTTGCATTATGTGAACTTT+TGG + chr2_2:54540405-54540424 Msa0258310:intron 30.0%
!!! CAATGTATTTTGCTGACTTT+AGG + chr2_2:54540590-54540609 Msa0258310:three_prime_UTR 30.0%
! AAAAAGTGTGTTGAGAATTC+AGG + chr2_2:54538745-54538764 Msa0258310:five_prime_UTR 30.0%
! TGCTGATCATATGATCTTTT+TGG - chr2_2:54538791-54538810 None:intergenic 30.0%
TCTAGCAATGTTTAGAGAAA+AGG + chr2_2:54538913-54538932 Msa0258310:CDS 30.0%
AATTGAGAGAAGAAAATTGG+AGG + chr2_2:54538943-54538962 Msa0258310:CDS 30.0%
CAAATTCAGTGTTTGTTTAC+TGG - chr2_2:54539046-54539065 None:intergenic 30.0%
CAATATCAAAGATTACTACG+TGG - chr2_2:54539233-54539252 None:intergenic 30.0%
ACAATATAACGTTGAAATCG+CGG + chr2_2:54539316-54539335 Msa0258310:intron 30.0%
!! TTTTAAAAAACGGTCTGCAA+CGG - chr2_2:54539351-54539370 None:intergenic 30.0%
!!! CTGGTCAAGGTTTTAAAAAA+CGG - chr2_2:54539361-54539380 None:intergenic 30.0%
TAAAGCTAATGCTTAAATCC+TGG - chr2_2:54539380-54539399 None:intergenic 30.0%
! CTTTGTTTGAGAAATTGCAT+AGG + chr2_2:54539567-54539586 Msa0258310:intron 30.0%
AGTTAGAAAGAAGATAGACA+TGG + chr2_2:54539633-54539652 Msa0258310:CDS 30.0%
! TGGAAAATCTAACCTTTTTC+TGG - chr2_2:54539693-54539712 None:intergenic 30.0%
AACAGTTAGTACTAAACAGT+TGG - chr2_2:54539713-54539732 None:intergenic 30.0%
! TACAACATAGGATTTGTTCA+AGG + chr2_2:54539760-54539779 Msa0258310:intron 30.0%
AATTTGAATTCCGTCTGTTT+CGG - chr2_2:54540056-54540075 None:intergenic 30.0%
TTAAAAACAATGTACGGAAG+AGG - chr2_2:54540127-54540146 None:intergenic 30.0%
!!! CTATATATTTTTGGGGTTAC+AGG + chr2_2:54540211-54540230 Msa0258310:intron 30.0%
!! TCAACTTGTTACCAAATTAG+TGG + chr2_2:54540289-54540308 Msa0258310:CDS 30.0%
! CTTTGCATTATGTGAACTTT+TGG + chr2_2:54540405-54540424 Msa0258310:intron 30.0%
!!! CAATGTATTTTGCTGACTTT+AGG + chr2_2:54540590-54540609 Msa0258310:three_prime_UTR 30.0%
TTTATAAGCACCTAAGGTAG+AGG + chr2_2:54538661-54538680 Msa0258310:five_prime_UTR 35.0%
GAAAACAGGTAAGAACAGTA+AGG + chr2_2:54538715-54538734 Msa0258310:five_prime_UTR 35.0%
! TCTTCCTTTTCATCTCTTCT+TGG - chr2_2:54538875-54538894 None:intergenic 35.0%
AAGAAGAGATGAAAAGGAAG+AGG + chr2_2:54538874-54538893 Msa0258310:CDS 35.0%
GATAAAGTTCATGCTCATCT+TGG + chr2_2:54538971-54538990 Msa0258310:CDS 35.0%
TGTGCCAAGTTTCAAAATCA+TGG + chr2_2:54539190-54539209 Msa0258310:intron 35.0%
TTGTCACGGATATCAAATTG+TGG - chr2_2:54539300-54539319 None:intergenic 35.0%
!!! CGTTTTTTAAAACCTTGACC+AGG + chr2_2:54539359-54539378 Msa0258310:intron 35.0%
TAATGCTTAAATCCTGGTCA+AGG - chr2_2:54539374-54539393 None:intergenic 35.0%
AGAAATTGCATAGGAGATTG+AGG + chr2_2:54539576-54539595 Msa0258310:intron 35.0%
GAAATTGCATAGGAGATTGA+GGG + chr2_2:54539577-54539596 Msa0258310:intron 35.0%
TAACAAAGAGTTGAAGCCAT+TGG + chr2_2:54539657-54539676 Msa0258310:CDS 35.0%
AACAAAGAGTTGAAGCCATT+GGG + chr2_2:54539658-54539677 Msa0258310:CDS 35.0%
!! AAATCTAACCTTTTTCTGGC+AGG - chr2_2:54539689-54539708 None:intergenic 35.0%
AGACTAAAGTCTAAGCAATG+TGG - chr2_2:54539824-54539843 None:intergenic 35.0%
CGGAATTCAAATTTCTCAGT+TGG + chr2_2:54540063-54540082 Msa0258310:intron 35.0%
! ACTTGTTACCAAATTAGTGG+AGG + chr2_2:54540292-54540311 Msa0258310:CDS 35.0%
ACTTCTAACCTCCACTAATT+TGG - chr2_2:54540303-54540322 None:intergenic 35.0%
AGGATATTTGACTGTTTGGT+AGG + chr2_2:54540703-54540722 Msa0258310:three_prime_UTR 35.0%
TTTATAAGCACCTAAGGTAG+AGG + chr2_2:54538661-54538680 Msa0258310:five_prime_UTR 35.0%
GAAAACAGGTAAGAACAGTA+AGG + chr2_2:54538715-54538734 Msa0258310:five_prime_UTR 35.0%
! TCTTCCTTTTCATCTCTTCT+TGG - chr2_2:54538875-54538894 None:intergenic 35.0%
AAGAAGAGATGAAAAGGAAG+AGG + chr2_2:54538874-54538893 Msa0258310:CDS 35.0%
GATAAAGTTCATGCTCATCT+TGG + chr2_2:54538971-54538990 Msa0258310:CDS 35.0%
TGTGCCAAGTTTCAAAATCA+TGG + chr2_2:54539190-54539209 Msa0258310:intron 35.0%
TTGTCACGGATATCAAATTG+TGG - chr2_2:54539300-54539319 None:intergenic 35.0%
!!! CGTTTTTTAAAACCTTGACC+AGG + chr2_2:54539359-54539378 Msa0258310:intron 35.0%
TAATGCTTAAATCCTGGTCA+AGG - chr2_2:54539374-54539393 None:intergenic 35.0%
AGAAATTGCATAGGAGATTG+AGG + chr2_2:54539576-54539595 Msa0258310:intron 35.0%
GAAATTGCATAGGAGATTGA+GGG + chr2_2:54539577-54539596 Msa0258310:intron 35.0%
TAACAAAGAGTTGAAGCCAT+TGG + chr2_2:54539657-54539676 Msa0258310:CDS 35.0%
AACAAAGAGTTGAAGCCATT+GGG + chr2_2:54539658-54539677 Msa0258310:CDS 35.0%
!! AAATCTAACCTTTTTCTGGC+AGG - chr2_2:54539689-54539708 None:intergenic 35.0%
AGACTAAAGTCTAAGCAATG+TGG - chr2_2:54539824-54539843 None:intergenic 35.0%
CGGAATTCAAATTTCTCAGT+TGG + chr2_2:54540063-54540082 Msa0258310:intron 35.0%
! ACTTGTTACCAAATTAGTGG+AGG + chr2_2:54540292-54540311 Msa0258310:CDS 35.0%
ACTTCTAACCTCCACTAATT+TGG - chr2_2:54540303-54540322 None:intergenic 35.0%
AGGATATTTGACTGTTTGGT+AGG + chr2_2:54540703-54540722 Msa0258310:three_prime_UTR 35.0%
ACTCTTCTTTCCTCTACCTT+AGG - chr2_2:54538674-54538693 None:intergenic 40.0%
AATTCAGGTAAGAGCAGCAA+TGG + chr2_2:54538760-54538779 Msa0258310:exon 40.0%
GTGCAACATGTGAAGAATTC+AGG + chr2_2:54538827-54538846 Msa0258310:CDS 40.0%
TTTCATCTCTTCTTGGACTC+TGG - chr2_2:54538868-54538887 None:intergenic 40.0%
GAGTCCAAGAAGAGATGAAA+AGG + chr2_2:54538868-54538887 Msa0258310:CDS 40.0%
CGAAAAGGAAACAAAGCGAT+TGG + chr2_2:54539000-54539019 Msa0258310:CDS 40.0%
!!! GTGGCCATGATTTTGAAACT+TGG - chr2_2:54539197-54539216 None:intergenic 40.0%
TCAAATTGTGGTCGCTATTG+CGG - chr2_2:54539288-54539307 None:intergenic 40.0%
TTTCACAGATCCAAAGAGGA+AGG + chr2_2:54539600-54539619 Msa0258310:CDS 40.0%
ATTGCAACATCCTTCCTCTT+TGG - chr2_2:54539613-54539632 None:intergenic 40.0%
TGCTTCTTGTTCCTTTCGTT+TGG + chr2_2:54540008-54540027 Msa0258310:intron 40.0%
TTCTTGTTCCTTTCGTTTGG+TGG + chr2_2:54540011-54540030 Msa0258310:intron 40.0%
ATCTCTTACCACCAAACGAA+AGG - chr2_2:54540022-54540041 None:intergenic 40.0%
GACTTTGTAACCGAAACAGA+CGG + chr2_2:54540043-54540062 Msa0258310:intron 40.0%
!!! TATTTTTGGGGTTACAGGAG+AGG + chr2_2:54540216-54540235 Msa0258310:intron 40.0%
!!! ATTTTTGGGGTTACAGGAGA+GGG + chr2_2:54540217-54540236 Msa0258310:intron 40.0%
GGAATACAATGAAGCTCTTG+AGG + chr2_2:54540238-54540257 Msa0258310:CDS 40.0%
TGACTGAAAGTGAGAGGATA+AGG + chr2_2:54540437-54540456 Msa0258310:CDS 40.0%
TTCTCGAATTCGCCGTAATT+AGG + chr2_2:54540683-54540702 Msa0258310:three_prime_UTR 40.0%
ACTCTTCTTTCCTCTACCTT+AGG - chr2_2:54538674-54538693 None:intergenic 40.0%
AATTCAGGTAAGAGCAGCAA+TGG + chr2_2:54538760-54538779 Msa0258310:exon 40.0%
GTGCAACATGTGAAGAATTC+AGG + chr2_2:54538827-54538846 Msa0258310:CDS 40.0%
TTTCATCTCTTCTTGGACTC+TGG - chr2_2:54538868-54538887 None:intergenic 40.0%
GAGTCCAAGAAGAGATGAAA+AGG + chr2_2:54538868-54538887 Msa0258310:CDS 40.0%
CGAAAAGGAAACAAAGCGAT+TGG + chr2_2:54539000-54539019 Msa0258310:CDS 40.0%
!!! GTGGCCATGATTTTGAAACT+TGG - chr2_2:54539197-54539216 None:intergenic 40.0%
TCAAATTGTGGTCGCTATTG+CGG - chr2_2:54539288-54539307 None:intergenic 40.0%
TTTCACAGATCCAAAGAGGA+AGG + chr2_2:54539600-54539619 Msa0258310:CDS 40.0%
ATTGCAACATCCTTCCTCTT+TGG - chr2_2:54539613-54539632 None:intergenic 40.0%
TGCTTCTTGTTCCTTTCGTT+TGG + chr2_2:54540008-54540027 Msa0258310:intron 40.0%
TTCTTGTTCCTTTCGTTTGG+TGG + chr2_2:54540011-54540030 Msa0258310:intron 40.0%
ATCTCTTACCACCAAACGAA+AGG - chr2_2:54540022-54540041 None:intergenic 40.0%
GACTTTGTAACCGAAACAGA+CGG + chr2_2:54540043-54540062 Msa0258310:intron 40.0%
!!! TATTTTTGGGGTTACAGGAG+AGG + chr2_2:54540216-54540235 Msa0258310:intron 40.0%
!!! ATTTTTGGGGTTACAGGAGA+GGG + chr2_2:54540217-54540236 Msa0258310:intron 40.0%
GGAATACAATGAAGCTCTTG+AGG + chr2_2:54540238-54540257 Msa0258310:CDS 40.0%
TGACTGAAAGTGAGAGGATA+AGG + chr2_2:54540437-54540456 Msa0258310:CDS 40.0%
TTCTCGAATTCGCCGTAATT+AGG + chr2_2:54540683-54540702 Msa0258310:three_prime_UTR 40.0%
TCATCTTGGTCGAGTCGAAA+AGG + chr2_2:54538985-54539004 Msa0258310:CDS 45.0%
AGGGTTTCACAGATCCAAAG+AGG + chr2_2:54539596-54539615 Msa0258310:CDS 45.0%
AGCTTGTGACTGAAAGTGAG+AGG + chr2_2:54540431-54540450 Msa0258310:intron 45.0%
GAGGATAAGGATGAAGAAGC+TGG + chr2_2:54540450-54540469 Msa0258310:CDS 45.0%
GATAAGGATGAAGAAGCTGG+AGG + chr2_2:54540453-54540472 Msa0258310:CDS 45.0%
! TGCTAGTGAAAGTAGCCTTG+TGG + chr2_2:54540512-54540531 Msa0258310:three_prime_UTR 45.0%
!! GCTAGTGAAAGTAGCCTTGT+GGG + chr2_2:54540513-54540532 Msa0258310:three_prime_UTR 45.0%
AACATCACACTGAACCCACA+AGG - chr2_2:54540530-54540549 None:intergenic 45.0%
TTTGACTGTTTGGTAGGACC+TGG + chr2_2:54540709-54540728 Msa0258310:three_prime_UTR 45.0%
TCATCTTGGTCGAGTCGAAA+AGG + chr2_2:54538985-54539004 Msa0258310:CDS 45.0%
AGGGTTTCACAGATCCAAAG+AGG + chr2_2:54539596-54539615 Msa0258310:CDS 45.0%
AGCTTGTGACTGAAAGTGAG+AGG + chr2_2:54540431-54540450 Msa0258310:intron 45.0%
GAGGATAAGGATGAAGAAGC+TGG + chr2_2:54540450-54540469 Msa0258310:CDS 45.0%
GATAAGGATGAAGAAGCTGG+AGG + chr2_2:54540453-54540472 Msa0258310:CDS 45.0%
! TGCTAGTGAAAGTAGCCTTG+TGG + chr2_2:54540512-54540531 Msa0258310:three_prime_UTR 45.0%
!! GCTAGTGAAAGTAGCCTTGT+GGG + chr2_2:54540513-54540532 Msa0258310:three_prime_UTR 45.0%
AACATCACACTGAACCCACA+AGG - chr2_2:54540530-54540549 None:intergenic 45.0%
TTCTGGCAGGTTTGACCCAA+TGG - chr2_2:54539676-54539695 None:intergenic 50.0%
GGGTCAAACCTGCCAGAAAA+AGG + chr2_2:54539678-54539697 Msa0258310:CDS 50.0%
TTCTGGCAGGTTTGACCCAA+TGG - chr2_2:54539676-54539695 None:intergenic 50.0%
GGGTCAAACCTGCCAGAAAA+AGG + chr2_2:54539678-54539697 Msa0258310:CDS 50.0%
! TCATGGCCACAGTCGCTTTG+CGG + chr2_2:54539207-54539226 Msa0258310:intron 55.0%
! TCATGGCCACAGTCGCTTTG+CGG + chr2_2:54539207-54539226 Msa0258310:intron 55.0%
ACGTGGCCGCAAAGCGACTG+TGG - chr2_2:54539216-54539235 None:intergenic 65.0%
ACGTGGCCGCAAAGCGACTG+TGG - chr2_2:54539216-54539235 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 54538654 54540730 54538654 ID=Msa0258310;Name=Msa0258310
chr2_2 mRNA 54538654 54540730 54538654 ID=Msa0258310-mRNA-1;Parent=Msa0258310;Name=Msa0258310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=125|1|1|1|1|1|4|223|174
chr2_2 exon 54538654 54539036 54538654 ID=Msa0258310-mRNA-1:exon:16389;Parent=Msa0258310-mRNA-1
chr2_2 exon 54539589 54539699 54539589 ID=Msa0258310-mRNA-1:exon:16390;Parent=Msa0258310-mRNA-1
chr2_2 exon 54540233 54540313 54540233 ID=Msa0258310-mRNA-1:exon:16391;Parent=Msa0258310-mRNA-1
chr2_2 exon 54540433 54540730 54540433 ID=Msa0258310-mRNA-1:exon:16392;Parent=Msa0258310-mRNA-1
chr2_2 five_prime_UTR 54538654 54538778 54538654 ID=Msa0258310-mRNA-1:five_prime_utr;Parent=Msa0258310-mRNA-1
chr2_2 CDS 54538779 54539036 54538779 ID=Msa0258310-mRNA-1:cds;Parent=Msa0258310-mRNA-1
chr2_2 CDS 54539589 54539699 54539589 ID=Msa0258310-mRNA-1:cds;Parent=Msa0258310-mRNA-1
chr2_2 CDS 54540233 54540313 54540233 ID=Msa0258310-mRNA-1:cds;Parent=Msa0258310-mRNA-1
chr2_2 CDS 54540433 54540507 54540433 ID=Msa0258310-mRNA-1:cds;Parent=Msa0258310-mRNA-1
chr2_2 three_prime_UTR 54540508 54540730 54540508 ID=Msa0258310-mRNA-1:three_prime_utr;Parent=Msa0258310-mRNA-1
Gene Sequence

>Msa0258310

ATGGCAACACCAAAAAGATCATATGATCAGCAACAACAACTACAGATTGTGCAACATGTGAAGAATTCAGGAATGATTAACAACATCCAGAGTCCAAGAAGAGATGAAAAGGAAGAGGAAATGTCAAGATCAGTTCTAGCAATGTTTAGAGAAAAGGAAGAAGAAATTGAGAGAAGAAAATTGGAGGTTAGAGATAAAGTTCATGCTCATCTTGGTCGAGTCGAAAAGGAAACAAAGCGATTGGCTGAGATAAGAGAAGAGATTGAGGGTTTCACAGATCCAAAGAGGAAGGATGTTGCAATAGTTAGAAAGAAGATAGACATGGTTAACAAAGAGTTGAAGCCATTGGGTCAAACCTGCCAGAAAAAGGAGAGGGAATACAATGAAGCTCTTGAGGCTTTCAATGAGAAAAACAAAGAAAAGGCTCAACTTGTTACCAAATTAGTGGAGCTTGTGACTGAAAGTGAGAGGATAAGGATGAAGAAGCTGGAGGATCTAAGCAAAAATATAGATACACTTCACTAA

Protein sequence

>Msa0258310

MATPKRSYDQQQQLQIVQHVKNSGMINNIQSPRRDEKEEEMSRSVLAMFREKEEEIERRKLEVRDKVHAHLGRVEKETKRLAEIREEIEGFTDPKRKDVAIVRKKIDMVNKELKPLGQTCQKKEREYNEALEAFNEKNKEKAQLVTKLVELVTESERIRMKKLEDLSKNIDTLH*