AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0866400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866400 MtrunA17_Chr5g0427491 98.830 171 1 1 1 170 1 171 2.67e-122 341
Msa0866400 MtrunA17_Chr3g0132871 58.427 178 61 7 1 170 1 173 1.55e-54 170
Msa0866400 MtrunA17_Chr5g0412221 50.000 176 75 8 1 169 1 170 3.39e-42 139
Msa0866400 MtrunA17_Chr8g0367531 50.400 125 52 4 54 169 48 171 4.96e-25 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0866400 AT4G38060.3 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0866400 AT4G38060.2 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0866400 AT4G38060.4 44.156 77 41 2 93 168 59 134 1.98e-14 67.0
Msa0866400 AT5G65480.1 39.759 83 42 3 85 167 76 150 2.28e-11 59.3

Find 58 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATGGTGGATGTGTTTC+TGG 0.086811 5_4:-68053283 Msa0866400:CDS
TCACAACAATGTGGTGAAAT+TGG 0.174455 5_4:-68051528 Msa0866400:three_prime_UTR
AAAACTTCTTCAGTTCTAAT+TGG 0.199763 5_4:-68054399 Msa0866400:five_prime_UTR
CCTTGTTATGGAAGAGATTA+TGG 0.254169 5_4:-68053157 Msa0866400:CDS
AATATGATTGGTAAACTTCT+TGG 0.258151 5_4:-68051664 Msa0866400:three_prime_UTR
CCAATCTCTCATGGTGGTTA+TGG 0.284622 5_4:-68053510 Msa0866400:CDS
CAAGAAAGGTGAAGAGAAAA+TGG 0.289877 5_4:-68053363 Msa0866400:CDS
AGAGAAACATGTTTGAAGTT+TGG 0.311863 5_4:-68051500 Msa0866400:three_prime_UTR
TGAAGAGAAAATGGAATAGT+AGG 0.316249 5_4:-68053354 Msa0866400:CDS
AAGAGAGGAGGAAAGTAGAT+AGG 0.329784 5_4:-68053330 Msa0866400:CDS
ACAATATACAAATTATTTGT+TGG 0.340337 5_4:+68051738 None:intergenic
ATATATGTCTATATGCGTTT+TGG 0.344168 5_4:-68051349 Msa0866400:three_prime_UTR
GATGATTCTGATTGGTCAAT+TGG 0.351802 5_4:-68053250 Msa0866400:CDS
GCAAGAAATATGTGGAAAAC+TGG 0.361128 5_4:-68051844 Msa0866400:CDS
TGACAATGTCTTCTCCTCAT+AGG 0.363084 5_4:+68051628 None:intergenic
TGAGGTAATGAGATTTCCTT+TGG 0.393984 5_4:-68053410 Msa0866400:CDS
CACAACAATGTGGTGAAATT+GGG 0.398333 5_4:-68051527 Msa0866400:three_prime_UTR
GCAGTGTTGGTTCCTTGTTA+TGG 0.406723 5_4:-68053169 Msa0866400:CDS
AGAGAGGAGGAAAGTAGATA+GGG 0.446591 5_4:-68053329 Msa0866400:CDS
CAAGAACCAAGAATCTCAAA+AGG 0.446650 5_4:-68053475 Msa0866400:CDS
CTGAATCTGATGATTCTGAT+TGG 0.451942 5_4:-68053258 Msa0866400:CDS
GTTGTTCTTGTTCCATCTGA+TGG 0.452438 5_4:-68053298 Msa0866400:CDS
GAAGAGAAAATGGAATAGTA+GGG 0.469666 5_4:-68053353 Msa0866400:CDS
CCTATGTTTGCTTGCACCAA+AGG 0.474081 5_4:+68053394 None:intergenic
CCATAACCACCATGAGAGAT+TGG 0.475688 5_4:+68053510 None:intergenic
ATGATGAAGATTAGTGTGTC+AGG 0.476847 5_4:+68051802 None:intergenic
CATAGGTTCTTCATCAAGAA+AGG 0.477610 5_4:-68053377 Msa0866400:CDS
TTCAACAGATTTGAACATGT+TGG 0.479485 5_4:-68053437 Msa0866400:CDS
TGATTGGTCAATTGGATGGT+TGG 0.487254 5_4:-68053242 Msa0866400:CDS
CCTTTGGTGCAAGCAAACAT+AGG 0.507225 5_4:-68053394 Msa0866400:CDS
AATGGAATAGTAGGGAAGAG+AGG 0.508759 5_4:-68053345 Msa0866400:CDS
ACTAAAAGCAACTTACTCAA+TGG 0.523253 5_4:-68053118 Msa0866400:CDS
TTATCAGTTTCATCATCACT+TGG 0.530693 5_4:+68053199 None:intergenic
AGCAACTTACTCAATGGTGT+TGG 0.531403 5_4:-68053112 Msa0866400:CDS
GATAATAATTGAAACCTATG+AGG 0.531958 5_4:-68051642 Msa0866400:three_prime_UTR
ATTGGATGGTTGGAACCTCA+TGG 0.532027 5_4:-68053232 Msa0866400:CDS
TGTCAAGAATAAAGCAATTG+TGG 0.541510 5_4:-68051610 Msa0866400:three_prime_UTR
TTTGAACATGTTGGAATCTG+AGG 0.545709 5_4:-68053428 Msa0866400:CDS
GTTATGGAAGAGATTATGGT+AGG 0.547954 5_4:-68053153 Msa0866400:CDS
ATTCTGATTGGTCAATTGGA+TGG 0.551491 5_4:-68053246 Msa0866400:CDS
CTCTCATGGTGGTTATGGAG+TGG 0.566656 5_4:-68053505 Msa0866400:CDS
CCATAATCTCTTCCATAACA+AGG 0.570281 5_4:+68053157 None:intergenic
GATGTGATGTCAAATATGAT+TGG 0.573394 5_4:-68051676 Msa0866400:three_prime_UTR
TGGCATTCACCAATCTCTCA+TGG 0.573580 5_4:-68053519 Msa0866400:CDS
TGGTTGGAACCTCATGGACC+TGG 0.574553 5_4:-68053226 Msa0866400:CDS
ATTTGTTGGCTTAAGATCAG+AGG 0.574843 5_4:+68051752 None:intergenic
AGATTATGGTAGGATTGAAG+AGG 0.576412 5_4:-68053143 Msa0866400:CDS
AAGAACCAAGAATCTCAAAA+GGG 0.581798 5_4:-68053474 Msa0866400:CDS
GAAACACATCCACCATCAGA+TGG 0.587498 5_4:+68053286 None:intergenic
TGCAGAAAGCAAGAAATATG+TGG 0.588632 5_4:-68051852 Msa0866400:intron
TCATCATCACTTGGAAAACC+AGG 0.594451 5_4:+68053208 None:intergenic
GTTCTTGTTCCATCTGATGG+TGG 0.597431 5_4:-68053295 Msa0866400:CDS
GGAATAGTAGGGAAGAGAGG+AGG 0.604239 5_4:-68053342 Msa0866400:CDS
AATTCGACGTAAATAAATGT+CGG 0.636507 5_4:-68053542 Msa0866400:exon
CTTGGAAAACCAGGTCCATG+AGG 0.659242 5_4:+68053217 None:intergenic
TCGACGTAAATAAATGTCGG+TGG 0.661450 5_4:-68053539 Msa0866400:exon
CATTCACCAATCTCTCATGG+TGG 0.721722 5_4:-68053516 Msa0866400:CDS
CTTTGAGAATCACAACAATG+TGG 0.751456 5_4:-68051537 Msa0866400:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATTTGTTTTTTAATTTT+TGG - chr5_4:68051672-68051691 Msa0866400:three_prime_UTR 10.0%
!!! ATTAAATTTTTTGTAATTTC+AGG - chr5_4:68053062-68053081 Msa0866400:intron 10.0%
!!! TTAAATTTTTTGTAATTTCA+GGG - chr5_4:68053063-68053082 Msa0866400:intron 10.0%
!! AATACAAAAACATAATTAAG+GGG + chr5_4:68051845-68051864 None:intergenic 15.0%
!! CAATACAAAAACATAATTAA+GGG + chr5_4:68051846-68051865 None:intergenic 15.0%
!! TCAATACAAAAACATAATTA+AGG + chr5_4:68051847-68051866 None:intergenic 15.0%
!! TAAGTGTTCATTTATAAAAT+AGG + chr5_4:68053552-68053571 None:intergenic 15.0%
!! ACAATATACAAATTATTTGT+TGG + chr5_4:68054091-68054110 None:intergenic 15.0%
!!! ATATTTTTAGAAACTTTCTC+AGG - chr5_4:68051453-68051472 Msa0866400:three_prime_UTR 20.0%
!!! AGGTTATTTTGTACTTTTTA+AGG - chr5_4:68051473-68051492 Msa0866400:three_prime_UTR 20.0%
!!! TATTTTATCATTTTAGCTTC+TGG - chr5_4:68051600-68051619 Msa0866400:three_prime_UTR 20.0%
!!! ATTTTATCATTTTAGCTTCT+GGG - chr5_4:68051601-68051620 Msa0866400:three_prime_UTR 20.0%
!!! GTTTTTGTTTTCCTATTTTA+AGG - chr5_4:68051806-68051825 Msa0866400:exon 20.0%
!! GATTAAAATCAGAAAATGTT+TGG + chr5_4:68052110-68052129 None:intergenic 20.0%
!!! TTTTTAGATAGTTATTCTGA+TGG - chr5_4:68052741-68052760 Msa0866400:intron 20.0%
!! TATAATATGAATGCTTGAAT+TGG - chr5_4:68052848-68052867 Msa0866400:intron 20.0%
!! TTAGAATATCAATAATGTGA+AGG - chr5_4:68053092-68053111 Msa0866400:CDS 20.0%
!!! TTTCTCATCTGTTTTTTTAT+AGG - chr5_4:68053386-68053405 Msa0866400:CDS 20.0%
!!! TTTTTATAGGAATATGTTAG+TGG - chr5_4:68053399-68053418 Msa0866400:CDS 20.0%
!!! TGTCATTTAAACATAATTGA+GGG + chr5_4:68053607-68053626 None:intergenic 20.0%
!!! GCTATCATTCTATTAATTTT+AGG + chr5_4:68053749-68053768 None:intergenic 20.0%
!!! CAAGATTTTCAAATTCATAT+TGG + chr5_4:68053847-68053866 None:intergenic 20.0%
!!! TTCAGATTTTATTTTTCTTC+TGG - chr5_4:68053913-68053932 Msa0866400:intron 20.0%
!! AAAACTTCTTCAGTTCTAAT+TGG - chr5_4:68051427-68051446 Msa0866400:three_prime_UTR 25.0%
! ATTCATGAACTTCTATTTCA+AGG + chr5_4:68051554-68051573 None:intergenic 25.0%
!! TTGAGTTAAATTGTTAGCTT+AGG - chr5_4:68051724-68051743 Msa0866400:three_prime_UTR 25.0%
! AAAAAGGACAACCTTAAAAT+AGG + chr5_4:68051820-68051839 None:intergenic 25.0%
! ACATAATTAAGGGGAAAAAA+AGG + chr5_4:68051836-68051855 None:intergenic 25.0%
! TATTGATCATGTGACAAATT+GGG - chr5_4:68051861-68051880 Msa0866400:intron 25.0%
!!! GTTTTTAGTTATCTGAATTG+TGG - chr5_4:68051883-68051902 Msa0866400:intron 25.0%
!! TGTACTTAGAACTAATGTTT+TGG - chr5_4:68051935-68051954 Msa0866400:intron 25.0%
!! GTACTTAGAACTAATGTTTT+GGG - chr5_4:68051936-68051955 Msa0866400:intron 25.0%
!! ATGTATATTGCACAATTTTC+AGG - chr5_4:68051985-68052004 Msa0866400:intron 25.0%
! AAGAACAAAAGTTAGTAACA+AGG + chr5_4:68052242-68052261 None:intergenic 25.0%
! AATTCGACGTAAATAAATGT+CGG - chr5_4:68052284-68052303 Msa0866400:intron 25.0%
! ATTGGAGTAAATACTCAAAT+TGG - chr5_4:68052866-68052885 Msa0866400:intron 25.0%
!! ATTTTGTAATACTGACAATG+TGG + chr5_4:68052918-68052937 None:intergenic 25.0%
!! AACAACATTTTGCAATTTCA+TGG + chr5_4:68052944-68052963 None:intergenic 25.0%
! AAATTGGTCACTAAAATTGT+AGG + chr5_4:68053134-68053153 None:intergenic 25.0%
!!! TATGTTAGTGGTTAATTTGT+CGG - chr5_4:68053411-68053430 Msa0866400:CDS 25.0%
! GTCATTTAAACATAATTGAG+GGG + chr5_4:68053606-68053625 None:intergenic 25.0%
!!! GTGTCATTTAAACATAATTG+AGG + chr5_4:68053608-68053627 None:intergenic 25.0%
!! AAATTTAACTTACATCCATG+AGG + chr5_4:68053724-68053743 None:intergenic 25.0%
! TTGTGCATATGATAATTATG+TGG - chr5_4:68053887-68053906 Msa0866400:intron 25.0%
! AATATGATTGGTAAACTTCT+TGG - chr5_4:68054162-68054181 Msa0866400:intron 25.0%
! GATAATAATTGAAACCTATG+AGG - chr5_4:68054184-68054203 Msa0866400:intron 25.0%
!! ATATATGTCTATATGCGTTT+TGG - chr5_4:68054477-68054496 Msa0866400:five_prime_UTR 25.0%
! GTATTGATCATGTGACAAAT+TGG - chr5_4:68051860-68051879 Msa0866400:intron 30.0%
!!! TAGAACTAATGTTTTGGGTT+TGG - chr5_4:68051941-68051960 Msa0866400:intron 30.0%
!!! TAATGTTTTGGGTTTGGTTT+TGG - chr5_4:68051947-68051966 Msa0866400:intron 30.0%
!!! AATGTTTTGGGTTTGGTTTT+GGG - chr5_4:68051948-68051967 Msa0866400:intron 30.0%
! CTTGAACTAAAAGCACAAAA+AGG + chr5_4:68052080-68052099 None:intergenic 30.0%
! TAACTTTTGTTCTTCTCAAC+AGG - chr5_4:68052248-68052267 Msa0866400:intron 30.0%
AAGAACCAAGAATCTCAAAA+GGG - chr5_4:68052352-68052371 Msa0866400:intron 30.0%
TTCAACAGATTTGAACATGT+TGG - chr5_4:68052389-68052408 Msa0866400:intron 30.0%
TGAAGAGAAAATGGAATAGT+AGG - chr5_4:68052472-68052491 Msa0866400:intron 30.0%
GAAGAGAAAATGGAATAGTA+GGG - chr5_4:68052473-68052492 Msa0866400:intron 30.0%
TTATCAGTTTCATCATCACT+TGG + chr5_4:68052630-68052649 None:intergenic 30.0%
!! TGATAATAGTTTTGCAGTGT+TGG - chr5_4:68052644-68052663 Msa0866400:intron 30.0%
ACTAAAAGCAACTTACTCAA+TGG - chr5_4:68052708-68052727 Msa0866400:intron 30.0%
!! TTGCAAAATGTTGTTTCAGT+TGG - chr5_4:68052949-68052968 Msa0866400:intron 30.0%
ATTTAATCAAATTCGTCCCT+TGG + chr5_4:68053049-68053068 None:intergenic 30.0%
AAGCGAGTAAATGCTAAAAT+TGG + chr5_4:68053150-68053169 None:intergenic 30.0%
!! ATGTTAGTGGTTAATTTGTC+GGG - chr5_4:68053412-68053431 Msa0866400:CDS 30.0%
!! TTGAAGGAGTATTATGAAAG+AGG + chr5_4:68053478-68053497 None:intergenic 30.0%
AGTGTCTTTAACATAATCGA+GGG - chr5_4:68053675-68053694 Msa0866400:intron 30.0%
TTTGAAAATCTTGCTGCATT+TGG - chr5_4:68053854-68053873 Msa0866400:intron 30.0%
TTTCTGCAACAACAACAAAA+AGG + chr5_4:68053962-68053981 None:intergenic 30.0%
! GGATTTTGTCATTAAGATAC+AGG + chr5_4:68054056-68054075 None:intergenic 30.0%
! AAAAAAAAAAGAGAGAGCAC+TGG - chr5_4:68054122-68054141 Msa0866400:intron 30.0%
GATGTGATGTCAAATATGAT+TGG - chr5_4:68054150-68054169 Msa0866400:intron 30.0%
TGTCAAGAATAAAGCAATTG+TGG - chr5_4:68054216-68054235 Msa0866400:intron 30.0%
! AGAGAAACATGTTTGAAGTT+TGG - chr5_4:68054326-68054345 Msa0866400:intron 30.0%
! TGTTAGCTTAGGATGTGATT+TGG - chr5_4:68051735-68051754 Msa0866400:three_prime_UTR 35.0%
!!! TGTCTGTGTTGGCTATTTTA+AGG - chr5_4:68051779-68051798 Msa0866400:three_prime_UTR 35.0%
!!! GTGTTGGCTATTTTAAGGTT+TGG - chr5_4:68051784-68051803 Msa0866400:three_prime_UTR 35.0%
ATGTTGCAGCACAACAAAAA+GGG + chr5_4:68052149-68052168 None:intergenic 35.0%
CAAGAACCAAGAATCTCAAA+AGG - chr5_4:68052351-68052370 Msa0866400:intron 35.0%
TTTGAACATGTTGGAATCTG+AGG - chr5_4:68052398-68052417 Msa0866400:intron 35.0%
TGAGGTAATGAGATTTCCTT+TGG - chr5_4:68052416-68052435 Msa0866400:intron 35.0%
CATAGGTTCTTCATCAAGAA+AGG - chr5_4:68052449-68052468 Msa0866400:intron 35.0%
CAAGAAAGGTGAAGAGAAAA+TGG - chr5_4:68052463-68052482 Msa0866400:intron 35.0%
CTGAATCTGATGATTCTGAT+TGG - chr5_4:68052568-68052587 Msa0866400:intron 35.0%
! GATGATTCTGATTGGTCAAT+TGG - chr5_4:68052576-68052595 Msa0866400:intron 35.0%
! ATTCTGATTGGTCAATTGGA+TGG - chr5_4:68052580-68052599 Msa0866400:intron 35.0%
CCATAATCTCTTCCATAACA+AGG + chr5_4:68052672-68052691 None:intergenic 35.0%
! CCTTGTTATGGAAGAGATTA+TGG - chr5_4:68052669-68052688 Msa0866400:intron 35.0%
GTTATGGAAGAGATTATGGT+AGG - chr5_4:68052673-68052692 Msa0866400:intron 35.0%
AGATTATGGTAGGATTGAAG+AGG - chr5_4:68052683-68052702 Msa0866400:intron 35.0%
TTGTAATACTGACAATGTGG+AGG + chr5_4:68052915-68052934 None:intergenic 35.0%
TAGCATTTACTCGCTTGAAT+TGG - chr5_4:68053154-68053173 Msa0866400:CDS 35.0%
AGCATTTACTCGCTTGAATT+GGG - chr5_4:68053155-68053174 Msa0866400:CDS 35.0%
! TTGTCTCTGAGTCTTTGTTT+GGG - chr5_4:68053219-68053238 Msa0866400:CDS 35.0%
!! TGTTAGTGGTTAATTTGTCG+GGG - chr5_4:68053413-68053432 Msa0866400:CDS 35.0%
! TTCATGAAAGTGTAGCCTAA+TGG + chr5_4:68053516-68053535 None:intergenic 35.0%
CAGTGTCTTTAACATAATCG+AGG - chr5_4:68053674-68053693 Msa0866400:intron 35.0%
GTGTCTTTAACATAATCGAG+GGG - chr5_4:68053676-68053695 Msa0866400:intron 35.0%
TGTCTTTAACATAATCGAGG+GGG - chr5_4:68053677-68053696 Msa0866400:intron 35.0%
!! CTCTAGTCTTGAAAGATAGT+AGG - chr5_4:68053779-68053798 Msa0866400:intron 35.0%
TGCAGAAAGCAAGAAATATG+TGG - chr5_4:68053974-68053993 Msa0866400:intron 35.0%
GCAAGAAATATGTGGAAAAC+TGG - chr5_4:68053982-68054001 Msa0866400:intron 35.0%
ATGATGAAGATTAGTGTGTC+AGG + chr5_4:68054027-68054046 None:intergenic 35.0%
!! ATTTGTTGGCTTAAGATCAG+AGG + chr5_4:68054077-68054096 None:intergenic 35.0%
! CTTTGAGAATCACAACAATG+TGG - chr5_4:68054289-68054308 Msa0866400:intron 35.0%
TCACAACAATGTGGTGAAAT+TGG - chr5_4:68054298-68054317 Msa0866400:intron 35.0%
CACAACAATGTGGTGAAATT+GGG - chr5_4:68054299-68054318 Msa0866400:intron 35.0%
!! AGGATGTGATTTGGTTACCT+TGG - chr5_4:68051744-68051763 Msa0866400:three_prime_UTR 40.0%
!! TGTGATTTGGTTACCTTGGT+AGG - chr5_4:68051748-68051767 Msa0866400:three_prime_UTR 40.0%
TGTTGCAGCACAACAAAAAG+GGG + chr5_4:68052148-68052167 None:intergenic 40.0%
GATGTTGCAGCACAACAAAA+AGG + chr5_4:68052150-68052169 None:intergenic 40.0%
TCGACGTAAATAAATGTCGG+TGG - chr5_4:68052287-68052306 Msa0866400:intron 40.0%
!!! GAAGTCCCTTTTGAGATTCT+TGG + chr5_4:68052360-68052379 None:intergenic 40.0%
AATGGAATAGTAGGGAAGAG+AGG - chr5_4:68052481-68052500 Msa0866400:intron 40.0%
AAGAGAGGAGGAAAGTAGAT+AGG - chr5_4:68052496-68052515 Msa0866400:intron 40.0%
AGAGAGGAGGAAAGTAGATA+GGG - chr5_4:68052497-68052516 Msa0866400:intron 40.0%
GTTGTTCTTGTTCCATCTGA+TGG - chr5_4:68052528-68052547 Msa0866400:intron 40.0%
! TGATTGGTCAATTGGATGGT+TGG - chr5_4:68052584-68052603 Msa0866400:intron 40.0%
TCATCATCACTTGGAAAACC+AGG + chr5_4:68052621-68052640 None:intergenic 40.0%
AGCAACTTACTCAATGGTGT+TGG - chr5_4:68052714-68052733 Msa0866400:intron 40.0%
AATCAAATTCGTCCCTTGGT+TGG + chr5_4:68053045-68053064 None:intergenic 40.0%
GTTGTCTCTGAGTCTTTGTT+TGG - chr5_4:68053218-68053237 Msa0866400:CDS 40.0%
ATAAGCATACTTCGATGGAG+TGG + chr5_4:68053358-68053377 None:intergenic 40.0%
GTGCTATAAGCATACTTCGA+TGG + chr5_4:68053363-68053382 None:intergenic 40.0%
AAAGTGTAGCCTAATGGTAC+CGG + chr5_4:68053510-68053529 None:intergenic 40.0%
! GTAGCTTGTAAAAAGCAGAG+GGG + chr5_4:68053636-68053655 None:intergenic 40.0%
! CGTAGCTTGTAAAAAGCAGA+GGG + chr5_4:68053637-68053656 None:intergenic 40.0%
! ACGTAGCTTGTAAAAAGCAG+AGG + chr5_4:68053638-68053657 None:intergenic 40.0%
ACAAGCTACGTATGATTGAG+TGG - chr5_4:68053647-68053666 Msa0866400:intron 40.0%
CATCGTTTAAGCATACCTCA+TGG - chr5_4:68053706-68053725 Msa0866400:intron 40.0%
TGACAATGTCTTCTCCTCAT+AGG + chr5_4:68054201-68054220 None:intergenic 40.0%
TTTGGTTACCTTGGTAGGTG+AGG - chr5_4:68051753-68051772 Msa0866400:three_prime_UTR 45.0%
AGACAAATCCTCACCTACCA+AGG + chr5_4:68051764-68051783 None:intergenic 45.0%
AGGTGAGGATTTGTCTGTGT+TGG - chr5_4:68051768-68051787 Msa0866400:three_prime_UTR 45.0%
TGGCATTCACCAATCTCTCA+TGG - chr5_4:68052307-68052326 Msa0866400:intron 45.0%
CATTCACCAATCTCTCATGG+TGG - chr5_4:68052310-68052329 Msa0866400:intron 45.0%
CCATAACCACCATGAGAGAT+TGG + chr5_4:68052319-68052338 None:intergenic 45.0%
CCAATCTCTCATGGTGGTTA+TGG - chr5_4:68052316-68052335 Msa0866400:intron 45.0%
CCTATGTTTGCTTGCACCAA+AGG + chr5_4:68052435-68052454 None:intergenic 45.0%
! CCTTTGGTGCAAGCAAACAT+AGG - chr5_4:68052432-68052451 Msa0866400:intron 45.0%
GTTCTTGTTCCATCTGATGG+TGG - chr5_4:68052531-68052550 Msa0866400:intron 45.0%
GAAACACATCCACCATCAGA+TGG + chr5_4:68052543-68052562 None:intergenic 45.0%
!! TCTGATGGTGGATGTGTTTC+TGG - chr5_4:68052543-68052562 Msa0866400:intron 45.0%
ATTGGATGGTTGGAACCTCA+TGG - chr5_4:68052594-68052613 Msa0866400:intron 45.0%
!! GCAGTGTTGGTTCCTTGTTA+TGG - chr5_4:68052657-68052676 Msa0866400:intron 45.0%
TCCCGATAAGTTCCAACCAA+GGG - chr5_4:68053030-68053049 Msa0866400:intron 45.0%
TCCCTTGGTTGGAACTTATC+GGG + chr5_4:68053034-68053053 None:intergenic 45.0%
GTCCCTTGGTTGGAACTTAT+CGG + chr5_4:68053035-68053054 None:intergenic 45.0%
!! GGTTAATTTGTCGGGGAAAG+AGG - chr5_4:68053420-68053439 Msa0866400:CDS 45.0%
AAGTGTAGCCTAATGGTACC+GGG + chr5_4:68053509-68053528 None:intergenic 45.0%
!!! TTTATCTTTTAAAAAAAATT+AGG - chr5_4:68053315-68053334 Msa0866400:CDS 5.0%
!!! TTATCTTTTAAAAAAAATTA+GGG - chr5_4:68053316-68053335 Msa0866400:CDS 5.0%
CTCTCATGGTGGTTATGGAG+TGG - chr5_4:68052321-68052340 Msa0866400:intron 50.0%
GGAATAGTAGGGAAGAGAGG+AGG - chr5_4:68052484-68052503 Msa0866400:intron 50.0%
CTTGGAAAACCAGGTCCATG+AGG + chr5_4:68052612-68052631 None:intergenic 50.0%
GTCCCGATAAGTTCCAACCA+AGG - chr5_4:68053029-68053048 Msa0866400:intron 50.0%
AGCATACTTCGATGGAGTGG+AGG + chr5_4:68053355-68053374 None:intergenic 50.0%
ACTCCTTCAATGTCCCAACC+CGG - chr5_4:68053488-68053507 Msa0866400:CDS 50.0%
! TAGCCTAATGGTACCGGGTT+GGG + chr5_4:68053504-68053523 None:intergenic 50.0%
TGGTTGGAACCTCATGGACC+TGG - chr5_4:68052600-68052619 Msa0866400:intron 55.0%
! GTACCGGGTTGGGACATTGA+AGG + chr5_4:68053494-68053513 None:intergenic 55.0%
TGTCCCAACCCGGTACCATT+AGG - chr5_4:68053498-68053517 Msa0866400:CDS 55.0%
! GTAGCCTAATGGTACCGGGT+TGG + chr5_4:68053505-68053524 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 68051342 68054506 68051342 ID=Msa0866400;Name=Msa0866400
chr5_4 mRNA 68051342 68054506 68051342 ID=Msa0866400-mRNA-1;Parent=Msa0866400;Name=Msa0866400-mRNA-1;_AED=0.00;_eAED=0.00;_QI=183|1|1|1|0.5|0.33|3|478|170
chr5_4 exon 68051342 68051869 68051342 ID=Msa0866400-mRNA-1:exon:21532;Parent=Msa0866400-mRNA-1
chr5_4 exon 68053086 68053578 68053086 ID=Msa0866400-mRNA-1:exon:21531;Parent=Msa0866400-mRNA-1
chr5_4 exon 68054354 68054506 68054354 ID=Msa0866400-mRNA-1:exon:21530;Parent=Msa0866400-mRNA-1
chr5_4 five_prime_UTR 68054354 68054506 68054354 ID=Msa0866400-mRNA-1:five_prime_utr;Parent=Msa0866400-mRNA-1
chr5_4 five_prime_UTR 68053549 68053578 68053549 ID=Msa0866400-mRNA-1:five_prime_utr;Parent=Msa0866400-mRNA-1
chr5_4 CDS 68053086 68053548 68053086 ID=Msa0866400-mRNA-1:cds;Parent=Msa0866400-mRNA-1
chr5_4 CDS 68051820 68051869 68051820 ID=Msa0866400-mRNA-1:cds;Parent=Msa0866400-mRNA-1
chr5_4 three_prime_UTR 68051342 68051819 68051342 ID=Msa0866400-mRNA-1:three_prime_utr;Parent=Msa0866400-mRNA-1
Gene Sequence

>Msa0866400

ATGTCGGTGGCATTCACCAATCTCTCATGGTGGTTATGGAGTGGAAAACATCAAGAACCAAGAATCTCAAAAGGGACTTCAATAAATTCTTCAACAGATTTGAACATGTTGGAATCTGAGGTAATGAGATTTCCTTTGGTGCAAGCAAACATAGGTTCTTCATCAAGAAAGGTGAAGAGAAAATGGAATAGTAGGGAAGAGAGGAGGAAAGTAGATAGGGAATATGATGTTGTTCTTGTTCCATCTGATGGTGGATGTGTTTCTGGTTCTGAATCTGATGATTCTGATTGGTCAATTGGATGGTTGGAACCTCATGGACCTGGTTTTCCAAGTGATGATGAAACTGATAATAGTTTTGCAGTGTTGGTTCCTTGTTATGGAAGAGATTATGGTAGGATTGAAGAGGATACTAAAAGCAACTTACTCAATGGTGTTGGACACTTTTTAGATAGTTATTCTGATGAAAGCAAGAAATATGTGGAAAACTGGCTATCTTCTATTCGAAATACCTGA

Protein sequence

>Msa0866400

MSVAFTNLSWWLWSGKHQEPRISKGTSINSSTDLNMLESEVMRFPLVQANIGSSSRKVKRKWNSREERRKVDREYDVVLVPSDGGCVSGSESDDSDWSIGWLEPHGPGFPSDDETDNSFAVLVPCYGRDYGRIEEDTKSNLLNGVGHFLDSYSDESKKYVENWLSSIRNT*