Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144620 | sp|Q0J0A4|LPAAT_ORYSJ | 81.818 | 143 | 26 | 0 | 34 | 176 | 47 | 189 | 6.83e-78 | 241 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144620 | A0A072VFG5 | 90.341 | 176 | 13 | 2 | 1 | 176 | 1 | 172 | 1.52e-106 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017320 | Msa0144620 | 0.816101 | 6.579470e-52 | -8.615850e-47 |
| Msa0038630 | Msa0144620 | 0.811259 | 7.655826e-51 | -8.615850e-47 |
| Msa0126230 | Msa0144620 | 0.800830 | 1.199107e-48 | -8.615850e-47 |
| Msa0144620 | Msa0161070 | -0.811099 | 8.292375e-51 | -8.615850e-47 |
| Msa0144620 | Msa0194720 | 0.800299 | 1.538262e-48 | -8.615850e-47 |
| Msa0144620 | Msa0241740 | 0.802034 | 6.794049e-49 | -8.615850e-47 |
| Msa0144620 | Msa0271580 | 0.808091 | 3.672477e-50 | -8.615850e-47 |
| Msa0144620 | Msa0320430 | 0.819565 | 1.086213e-52 | -8.615850e-47 |
| Msa0144620 | Msa0433530 | 0.812742 | 3.638662e-51 | -8.615850e-47 |
| Msa0144620 | Msa0534410 | 0.843760 | 1.149417e-58 | -8.615850e-47 |
| Msa0144620 | Msa0582280 | 0.800845 | 1.190477e-48 | -8.615850e-47 |
| Msa0144620 | Msa0590650 | 0.809595 | 1.750697e-50 | -8.615850e-47 |
| Msa0144620 | Msa0630950 | 0.835971 | 1.229467e-56 | -8.615850e-47 |
| Msa0144620 | Msa0716500 | 0.823948 | 1.051847e-53 | -8.615850e-47 |
| Msa0144620 | Msa0731180 | 0.806670 | 7.347400e-50 | -8.615850e-47 |
| Msa0144620 | Msa0799070 | 0.812816 | 3.504421e-51 | -8.615850e-47 |
| Msa0144620 | Msa0830210 | 0.812201 | 4.775523e-51 | -8.615850e-47 |
| Msa0144620 | Msa0837480 | 0.820013 | 8.582253e-53 | -8.615850e-47 |
| Msa0144620 | Msa1036740 | 0.825614 | 4.258088e-54 | -8.615850e-47 |
| Msa0144620 | Msa1077070 | 0.835137 | 1.998781e-56 | -8.615850e-47 |
| Msa0144620 | Msa1122780 | 0.836065 | 1.164212e-56 | -8.615850e-47 |
| Msa0144620 | Msa1174310 | 0.818940 | 1.507767e-52 | -8.615850e-47 |
| Msa0144620 | Msa1206100 | 0.814864 | 1.240008e-51 | -8.615850e-47 |
| Msa0144620 | Msa1235400 | 0.812652 | 3.806364e-51 | -8.615850e-47 |
| Msa0144620 | Msa1314770 | 0.806931 | 6.472920e-50 | -8.615850e-47 |
| Msa0144620 | Msa1329550 | 0.810233 | 1.276088e-50 | -8.615850e-47 |
| Msa0144620 | Msa1336040 | 0.821428 | 4.058607e-53 | -8.615850e-47 |
| Msa0144620 | Msa1338250 | 0.802995 | 4.306065e-49 | -8.615850e-47 |
| Msa0144620 | Msa1348600 | 0.820771 | 5.752269e-53 | -8.615850e-47 |
| Msa0144620 | Msa1426910 | 0.815277 | 1.003642e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144620 | MtrunA17_Chr1g0155871 | 90.341 | 176 | 13 | 2 | 1 | 176 | 1 | 172 | 2.81e-109 | 317 |
| Msa0144620 | MtrunA17_Chr3g0142281 | 83.333 | 138 | 23 | 0 | 39 | 176 | 25 | 162 | 5.07e-80 | 242 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144620 | AT4G24160.2 | 77.778 | 144 | 32 | 0 | 33 | 176 | 50 | 193 | 1.92e-79 | 240 |
| Msa0144620 | AT4G24160.1 | 77.778 | 144 | 32 | 0 | 33 | 176 | 50 | 193 | 2.42e-78 | 239 |
Find 44 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACGTTGGCGGCGGTTTC+TGG | 0.153405 | 1_4:-4237185 | Msa0144620:CDS |
| TAATTAACTAACTAACTAAA+TGG | 0.271156 | 1_4:+4237299 | None:intergenic |
| TAATAATTAGCATAAATAAT+TGG | 0.284809 | 1_4:+4237332 | None:intergenic |
| TTAACTTGTTCTTGAACATA+TGG | 0.331874 | 1_4:+4236231 | None:intergenic |
| CTTGGTTCATCGATTCTTTG+AGG | 0.397700 | 1_4:-4235598 | Msa0144620:CDS |
| GTTCAAGAACAAGTTAATAT+AGG | 0.415833 | 1_4:-4236225 | Msa0144620:CDS |
| CACTCTTATTGCAGCTGGGG+TGG | 0.427632 | 1_4:-4235745 | Msa0144620:intron |
| AACCACCTCACTCTTGAATC+AGG | 0.436665 | 1_4:+4236192 | None:intergenic |
| TTTCTTTCTTTCTTCCTTCG+CGG | 0.452735 | 1_4:-4237381 | Msa0144620:five_prime_UTR |
| TCACGGATATGCTGCATCAC+AGG | 0.453973 | 1_4:-4236088 | Msa0144620:CDS |
| TGATTCTCCTACATTGGTAA+TGG | 0.458384 | 1_4:-4236112 | Msa0144620:CDS |
| TTAAGAGTTAGTTGAGGATG+AGG | 0.459539 | 1_4:-4237437 | Msa0144620:five_prime_UTR |
| GAACAAGTTAATATAGGCTC+TGG | 0.472116 | 1_4:-4236219 | Msa0144620:CDS |
| TAGAAGTTATAAAATTGCTC+AGG | 0.478887 | 1_4:+4235554 | None:intergenic |
| CCTACATTGGTAATGGTTCA+CGG | 0.487681 | 1_4:-4236105 | Msa0144620:CDS |
| TAAAGATGATTCTCCTACAT+TGG | 0.493571 | 1_4:-4236118 | Msa0144620:CDS |
| CCGTGAACCATTACCAATGT+AGG | 0.494788 | 1_4:+4236105 | None:intergenic |
| GTTATAGCAATTGATCAACT+TGG | 0.502484 | 1_4:-4236021 | Msa0144620:CDS |
| GCAGCTGGGGTGGATCTAGC+AGG | 0.518458 | 1_4:-4235735 | Msa0144620:intron |
| TTCATCGATTCTTTGAGGAA+TGG | 0.532391 | 1_4:-4235593 | Msa0144620:CDS |
| AACAAGAACAAGAACAAGAA+TGG | 0.539683 | 1_4:-4237238 | Msa0144620:CDS |
| CACGGATATGCTGCATCACA+GGG | 0.549314 | 1_4:-4236087 | Msa0144620:CDS |
| ATCGATTCTTTGAGGAATGG+AGG | 0.553690 | 1_4:-4235590 | Msa0144620:CDS |
| AACAAGAACAAGAATGGCGG+CGG | 0.557375 | 1_4:-4237232 | Msa0144620:CDS |
| ATGATGTGGTCAGTAGAAGT+AGG | 0.559446 | 1_4:+4237141 | None:intergenic |
| ATTACTTGACAAGAGAAAGA+AGG | 0.559657 | 1_4:+4237103 | None:intergenic |
| ACTGTATAGAAACCGAGGCT+TGG | 0.569063 | 1_4:-4235616 | Msa0144620:intron |
| TTATAGCAATTGATCAACTT+GGG | 0.570008 | 1_4:-4236020 | Msa0144620:intron |
| AGAAAGAAAGCAAGCTTACG+CGG | 0.590248 | 1_4:+4237395 | None:intergenic |
| AAGTAATTAAGAGTTAGTTG+AGG | 0.598108 | 1_4:-4237443 | None:intergenic |
| CACCTCACTCTTGAATCAGG+TGG | 0.604665 | 1_4:+4236195 | None:intergenic |
| AAGAAGAAGAAGAACCGCGA+AGG | 0.605324 | 1_4:+4237367 | None:intergenic |
| GCGGCGGAAGACACGACTAC+CGG | 0.609193 | 1_4:-4237216 | Msa0144620:CDS |
| GAAAGAAAGCAAGCTTACGC+GGG | 0.615295 | 1_4:+4237396 | None:intergenic |
| TGCTATAACTCTGAAACGCG+AGG | 0.619015 | 1_4:+4236035 | None:intergenic |
| TTTACATGCAAAAGCACTGA+AGG | 0.623519 | 1_4:-4235706 | Msa0144620:intron |
| AGAATCGATGAACCAAGCCT+CGG | 0.633894 | 1_4:+4235604 | None:intergenic |
| GTCCACCTGATTCAAGAGTG+AGG | 0.647717 | 1_4:-4236197 | Msa0144620:CDS |
| CACCTGATTCAAGAGTGAGG+TGG | 0.660135 | 1_4:-4236194 | Msa0144620:CDS |
| TTGATACTGTATAGAAACCG+AGG | 0.660707 | 1_4:-4235621 | Msa0144620:intron |
| GTAACTGTGTTAATAAACCG+CGG | 0.710027 | 1_4:+4236150 | None:intergenic |
| TAGAAGTAGGAATCCAACGT+CGG | 0.715480 | 1_4:+4237154 | None:intergenic |
| AAGAACAAGAACAAGAATGG+CGG | 0.717946 | 1_4:-4237235 | Msa0144620:CDS |
| GTTCATCTAGCAATGAACCG+CGG | 0.776612 | 1_4:-4236167 | Msa0144620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATTAGCATAAATAAT+TGG | + | chr1_4:4235661-4235680 | None:intergenic | 10.0% |
| !! | TAATAATTAGCATAAATAAT+TGG | + | chr1_4:4235661-4235680 | None:intergenic | 10.0% |
| !! | TAATTAACTAACTAACTAAA+TGG | + | chr1_4:4235694-4235713 | None:intergenic | 15.0% |
| !! | ATTAAATTGTTTATTCAAAC+AGG | - | chr1_4:4236568-4236587 | Msa0144620:intron | 15.0% |
| !! | TTAAATTGTTTATTCAAACA+GGG | - | chr1_4:4236569-4236588 | Msa0144620:intron | 15.0% |
| !! | ATTAAATTGTTTATTCAAAC+AGG | - | chr1_4:4236568-4236587 | Msa0144620:intron | 15.0% |
| !! | TTAAATTGTTTATTCAAACA+GGG | - | chr1_4:4236569-4236588 | Msa0144620:intron | 15.0% |
| !! | TAATTAACTAACTAACTAAA+TGG | + | chr1_4:4235694-4235713 | None:intergenic | 15.0% |
| !! | ATTAAATTGTTTATTCAAAC+AGG | - | chr1_4:4236568-4236587 | Msa0144620:intron | 15.0% |
| !! | TTAAATTGTTTATTCAAACA+GGG | - | chr1_4:4236569-4236588 | Msa0144620:intron | 15.0% |
| !! | ATTAAATTGTTTATTCAAAC+AGG | - | chr1_4:4236568-4236587 | Msa0144620:intron | 15.0% |
| !! | TTAAATTGTTTATTCAAACA+GGG | - | chr1_4:4236569-4236588 | Msa0144620:intron | 15.0% |
| !! | GAAATCAAAACAAATTCATA+AGG | + | chr1_4:4235917-4235936 | None:intergenic | 20.0% |
| !! | AGAAATAGCTTATAAATGAT+AGG | - | chr1_4:4236524-4236543 | Msa0144620:intron | 20.0% |
| !!! | TTACTATGTTTTTTTTTGTC+AGG | - | chr1_4:4236610-4236629 | Msa0144620:intron | 20.0% |
| !! | AGAAATAGCTTATAAATGAT+AGG | - | chr1_4:4236524-4236543 | Msa0144620:intron | 20.0% |
| !!! | TATTACTATGTTTTTTTGTC+AGG | - | chr1_4:4236733-4236752 | Msa0144620:intron | 20.0% |
| !! | GAAATCAAAACAAATTCATA+AGG | + | chr1_4:4235917-4235936 | None:intergenic | 20.0% |
| !! | AGAAATAGCTTATAAATGAT+AGG | - | chr1_4:4236524-4236543 | Msa0144620:intron | 20.0% |
| !!! | TTACTATGTTTTTTTTTGTC+AGG | - | chr1_4:4236610-4236629 | Msa0144620:intron | 20.0% |
| !! | AGAAATAGCTTATAAATGAT+AGG | - | chr1_4:4236524-4236543 | Msa0144620:intron | 20.0% |
| !!! | TATTACTATGTTTTTTTGTC+AGG | - | chr1_4:4236733-4236752 | Msa0144620:intron | 20.0% |
| ! | TTAAGCTGTTTATTCAAACA+TGG | - | chr1_4:4236095-4236114 | Msa0144620:CDS | 25.0% |
| !! | TTTTATAAGCTTTCCTAGAT+TGG | - | chr1_4:4236186-4236205 | Msa0144620:CDS | 25.0% |
| ! | TTTATAAGCTTTCCTAGATT+GGG | - | chr1_4:4236187-4236206 | Msa0144620:CDS | 25.0% |
| !! | ACATGTTCATAAACTGTTTT+CGG | - | chr1_4:4236287-4236306 | Msa0144620:intron | 25.0% |
| !!! | AGCTATTTCTATAACACATA+TGG | + | chr1_4:4236639-4236658 | None:intergenic | 25.0% |
| !!! | TTAACTTGTTCTTGAACATA+TGG | + | chr1_4:4236762-4236781 | None:intergenic | 25.0% |
| ! | GTTCAAGAACAAGTTAATAT+AGG | - | chr1_4:4236765-4236784 | Msa0144620:intron | 25.0% |
| ! | TTATAGCAATTGATCAACTT+GGG | - | chr1_4:4236970-4236989 | Msa0144620:intron | 25.0% |
| ! | GAAATAAAAAAATGACGTCA+TGG | + | chr1_4:4237191-4237210 | None:intergenic | 25.0% |
| !!! | TAAAATTGCTCAGGTTTTTT+TGG | + | chr1_4:4237430-4237449 | None:intergenic | 25.0% |
| ! | TAGAAGTTATAAAATTGCTC+AGG | + | chr1_4:4237439-4237458 | None:intergenic | 25.0% |
| ! | TTAAGCTGTTTATTCAAACA+TGG | - | chr1_4:4236095-4236114 | Msa0144620:CDS | 25.0% |
| !! | TTTTATAAGCTTTCCTAGAT+TGG | - | chr1_4:4236186-4236205 | Msa0144620:CDS | 25.0% |
| ! | TTTATAAGCTTTCCTAGATT+GGG | - | chr1_4:4236187-4236206 | Msa0144620:CDS | 25.0% |
| !! | ACATGTTCATAAACTGTTTT+CGG | - | chr1_4:4236287-4236306 | Msa0144620:intron | 25.0% |
| !!! | AGCTATTTCTATAACACATA+TGG | + | chr1_4:4236639-4236658 | None:intergenic | 25.0% |
| !!! | TTAACTTGTTCTTGAACATA+TGG | + | chr1_4:4236762-4236781 | None:intergenic | 25.0% |
| ! | GTTCAAGAACAAGTTAATAT+AGG | - | chr1_4:4236765-4236784 | Msa0144620:intron | 25.0% |
| ! | TTATAGCAATTGATCAACTT+GGG | - | chr1_4:4236970-4236989 | Msa0144620:intron | 25.0% |
| ! | GAAATAAAAAAATGACGTCA+TGG | + | chr1_4:4237191-4237210 | None:intergenic | 25.0% |
| !!! | TAAAATTGCTCAGGTTTTTT+TGG | + | chr1_4:4237430-4237449 | None:intergenic | 25.0% |
| ! | TAGAAGTTATAAAATTGCTC+AGG | + | chr1_4:4237439-4237458 | None:intergenic | 25.0% |
| AACAAGAACAAGAACAAGAA+TGG | - | chr1_4:4235752-4235771 | Msa0144620:intron | 30.0% | |
| ATTACTTGACAAGAGAAAGA+AGG | + | chr1_4:4235890-4235909 | None:intergenic | 30.0% | |
| AGAAATAGCTTATCGTGATA+AGG | - | chr1_4:4236051-4236070 | Msa0144620:CDS | 30.0% | |
| GAAATAGCTTATCGTGATAA+GGG | - | chr1_4:4236052-4236071 | Msa0144620:CDS | 30.0% | |
| ! | GCTCTTTTCATAAATACTCT+AGG | + | chr1_4:4236255-4236274 | None:intergenic | 30.0% |
| AATGTTTCCATAAGCTATCT+TGG | + | chr1_4:4236331-4236350 | None:intergenic | 30.0% | |
| ! | ATTAAGTTGTTCATCCAAAC+AGG | - | chr1_4:4236463-4236482 | Msa0144620:intron | 30.0% |
| ! | TTAAGTTGTTCATCCAAACA+GGG | - | chr1_4:4236464-4236483 | Msa0144620:intron | 30.0% |
| AATTATTTATGTGCCCTGTT+TGG | + | chr1_4:4236480-4236499 | None:intergenic | 30.0% | |
| TAAAGATGATTCTCCTACAT+TGG | - | chr1_4:4236872-4236891 | Msa0144620:intron | 30.0% | |
| GTTATAGCAATTGATCAACT+TGG | - | chr1_4:4236969-4236988 | Msa0144620:intron | 30.0% | |
| GTGTGATGAAATAAATACGT+CGG | - | chr1_4:4237077-4237096 | Msa0144620:intron | 30.0% | |
| AACAAGAACAAGAACAAGAA+TGG | - | chr1_4:4235752-4235771 | Msa0144620:intron | 30.0% | |
| ATTACTTGACAAGAGAAAGA+AGG | + | chr1_4:4235890-4235909 | None:intergenic | 30.0% | |
| AGAAATAGCTTATCGTGATA+AGG | - | chr1_4:4236051-4236070 | Msa0144620:CDS | 30.0% | |
| GAAATAGCTTATCGTGATAA+GGG | - | chr1_4:4236052-4236071 | Msa0144620:CDS | 30.0% | |
| ! | GCTCTTTTCATAAATACTCT+AGG | + | chr1_4:4236255-4236274 | None:intergenic | 30.0% |
| AATGTTTCCATAAGCTATCT+TGG | + | chr1_4:4236331-4236350 | None:intergenic | 30.0% | |
| ! | ATTAAGTTGTTCATCCAAAC+AGG | - | chr1_4:4236463-4236482 | Msa0144620:intron | 30.0% |
| ! | TTAAGTTGTTCATCCAAACA+GGG | - | chr1_4:4236464-4236483 | Msa0144620:intron | 30.0% |
| AATTATTTATGTGCCCTGTT+TGG | + | chr1_4:4236480-4236499 | None:intergenic | 30.0% | |
| TAAAGATGATTCTCCTACAT+TGG | - | chr1_4:4236872-4236891 | Msa0144620:intron | 30.0% | |
| GTTATAGCAATTGATCAACT+TGG | - | chr1_4:4236969-4236988 | Msa0144620:intron | 30.0% | |
| GTGTGATGAAATAAATACGT+CGG | - | chr1_4:4237077-4237096 | Msa0144620:intron | 30.0% | |
| TTAAGAGTTAGTTGAGGATG+AGG | - | chr1_4:4235553-4235572 | Msa0144620:CDS | 35.0% | |
| TTTCTTTCTTTCTTCCTTCG+CGG | - | chr1_4:4235609-4235628 | Msa0144620:CDS | 35.0% | |
| AAGAACAAGAACAAGAATGG+CGG | - | chr1_4:4235755-4235774 | Msa0144620:intron | 35.0% | |
| !!! | GTTTTTCAGCATTGATGATG+TGG | + | chr1_4:4235866-4235885 | None:intergenic | 35.0% |
| TTGGGTATGAAAACAGCTTA+TGG | - | chr1_4:4236205-4236224 | Msa0144620:CDS | 35.0% | |
| TGGGTATGAAAACAGCTTAT+GGG | - | chr1_4:4236206-4236225 | Msa0144620:CDS | 35.0% | |
| TCAAACAAGCCAATCTAAAC+AGG | + | chr1_4:4236232-4236251 | None:intergenic | 35.0% | |
| GAACAAGTTAATATAGGCTC+TGG | - | chr1_4:4236771-4236790 | Msa0144620:intron | 35.0% | |
| GTAACTGTGTTAATAAACCG+CGG | + | chr1_4:4236843-4236862 | None:intergenic | 35.0% | |
| TGATTCTCCTACATTGGTAA+TGG | - | chr1_4:4236878-4236897 | Msa0144620:intron | 35.0% | |
| GCTTAATGACTATGTTCTGA+TGG | - | chr1_4:4237127-4237146 | Msa0144620:CDS | 35.0% | |
| ! | TTTTCACTCTTATTGCAGCT+GGG | - | chr1_4:4237241-4237260 | Msa0144620:CDS | 35.0% |
| !! | TTTACATGCAAAAGCACTGA+AGG | - | chr1_4:4237284-4237303 | Msa0144620:exon | 35.0% |
| TTGATACTGTATAGAAACCG+AGG | - | chr1_4:4237369-4237388 | Msa0144620:five_prime_UTR | 35.0% | |
| !! | TTCATCGATTCTTTGAGGAA+TGG | - | chr1_4:4237397-4237416 | Msa0144620:five_prime_UTR | 35.0% |
| TTAAGAGTTAGTTGAGGATG+AGG | - | chr1_4:4235553-4235572 | Msa0144620:CDS | 35.0% | |
| TTTCTTTCTTTCTTCCTTCG+CGG | - | chr1_4:4235609-4235628 | Msa0144620:CDS | 35.0% | |
| AAGAACAAGAACAAGAATGG+CGG | - | chr1_4:4235755-4235774 | Msa0144620:intron | 35.0% | |
| !!! | GTTTTTCAGCATTGATGATG+TGG | + | chr1_4:4235866-4235885 | None:intergenic | 35.0% |
| TTGGGTATGAAAACAGCTTA+TGG | - | chr1_4:4236205-4236224 | Msa0144620:CDS | 35.0% | |
| TGGGTATGAAAACAGCTTAT+GGG | - | chr1_4:4236206-4236225 | Msa0144620:CDS | 35.0% | |
| TCAAACAAGCCAATCTAAAC+AGG | + | chr1_4:4236232-4236251 | None:intergenic | 35.0% | |
| GAACAAGTTAATATAGGCTC+TGG | - | chr1_4:4236771-4236790 | Msa0144620:intron | 35.0% | |
| GTAACTGTGTTAATAAACCG+CGG | + | chr1_4:4236843-4236862 | None:intergenic | 35.0% | |
| TGATTCTCCTACATTGGTAA+TGG | - | chr1_4:4236878-4236897 | Msa0144620:intron | 35.0% | |
| GCTTAATGACTATGTTCTGA+TGG | - | chr1_4:4237127-4237146 | Msa0144620:CDS | 35.0% | |
| ! | TTTTCACTCTTATTGCAGCT+GGG | - | chr1_4:4237241-4237260 | Msa0144620:CDS | 35.0% |
| !! | TTTACATGCAAAAGCACTGA+AGG | - | chr1_4:4237284-4237303 | Msa0144620:exon | 35.0% |
| TTGATACTGTATAGAAACCG+AGG | - | chr1_4:4237369-4237388 | Msa0144620:five_prime_UTR | 35.0% | |
| !! | TTCATCGATTCTTTGAGGAA+TGG | - | chr1_4:4237397-4237416 | Msa0144620:five_prime_UTR | 35.0% |
| AGAAAGAAAGCAAGCTTACG+CGG | + | chr1_4:4235598-4235617 | None:intergenic | 40.0% | |
| ACCGGAAAAAACAACAACGT+TGG | - | chr1_4:4235792-4235811 | Msa0144620:intron | 40.0% | |
| !!! | GCCAACGTTGTTGTTTTTTC+CGG | + | chr1_4:4235796-4235815 | None:intergenic | 40.0% |
| GGAAAAAACAACAACGTTGG+CGG | - | chr1_4:4235795-4235814 | Msa0144620:intron | 40.0% | |
| TAGAAGTAGGAATCCAACGT+CGG | + | chr1_4:4235839-4235858 | None:intergenic | 40.0% | |
| ATGATGTGGTCAGTAGAAGT+AGG | + | chr1_4:4235852-4235871 | None:intergenic | 40.0% | |
| !! | GCTGTTTTCATACCCAATCT+AGG | + | chr1_4:4236202-4236221 | None:intergenic | 40.0% |
| AAGCTCACCAAGATAGCTTA+TGG | - | chr1_4:4236321-4236340 | Msa0144620:intron | 40.0% | |
| !! | CCTACATTGGTAATGGTTCA+CGG | - | chr1_4:4236885-4236904 | Msa0144620:intron | 40.0% |
| ! | GTTTTCACTCTTATTGCAGC+TGG | - | chr1_4:4237240-4237259 | Msa0144620:CDS | 40.0% |
| TTTCACTCTTATTGCAGCTG+GGG | - | chr1_4:4237242-4237261 | Msa0144620:CDS | 40.0% | |
| ! | GTGCTTTTGCATGTAAAGTC+TGG | + | chr1_4:4237281-4237300 | None:intergenic | 40.0% |
| !! | CTTGGTTCATCGATTCTTTG+AGG | - | chr1_4:4237392-4237411 | Msa0144620:five_prime_UTR | 40.0% |
| ! | ATCGATTCTTTGAGGAATGG+AGG | - | chr1_4:4237400-4237419 | Msa0144620:five_prime_UTR | 40.0% |
| AGAAAGAAAGCAAGCTTACG+CGG | + | chr1_4:4235598-4235617 | None:intergenic | 40.0% | |
| ACCGGAAAAAACAACAACGT+TGG | - | chr1_4:4235792-4235811 | Msa0144620:intron | 40.0% | |
| !!! | GCCAACGTTGTTGTTTTTTC+CGG | + | chr1_4:4235796-4235815 | None:intergenic | 40.0% |
| GGAAAAAACAACAACGTTGG+CGG | - | chr1_4:4235795-4235814 | Msa0144620:intron | 40.0% | |
| TAGAAGTAGGAATCCAACGT+CGG | + | chr1_4:4235839-4235858 | None:intergenic | 40.0% | |
| ATGATGTGGTCAGTAGAAGT+AGG | + | chr1_4:4235852-4235871 | None:intergenic | 40.0% | |
| !! | GCTGTTTTCATACCCAATCT+AGG | + | chr1_4:4236202-4236221 | None:intergenic | 40.0% |
| AAGCTCACCAAGATAGCTTA+TGG | - | chr1_4:4236321-4236340 | Msa0144620:intron | 40.0% | |
| !! | CCTACATTGGTAATGGTTCA+CGG | - | chr1_4:4236885-4236904 | Msa0144620:intron | 40.0% |
| ! | GTTTTCACTCTTATTGCAGC+TGG | - | chr1_4:4237240-4237259 | Msa0144620:CDS | 40.0% |
| TTTCACTCTTATTGCAGCTG+GGG | - | chr1_4:4237242-4237261 | Msa0144620:CDS | 40.0% | |
| ! | GTGCTTTTGCATGTAAAGTC+TGG | + | chr1_4:4237281-4237300 | None:intergenic | 40.0% |
| !! | CTTGGTTCATCGATTCTTTG+AGG | - | chr1_4:4237392-4237411 | Msa0144620:five_prime_UTR | 40.0% |
| ! | ATCGATTCTTTGAGGAATGG+AGG | - | chr1_4:4237400-4237419 | Msa0144620:five_prime_UTR | 40.0% |
| GAAAGAAAGCAAGCTTACGC+GGG | + | chr1_4:4235597-4235616 | None:intergenic | 45.0% | |
| AAGAAGAAGAAGAACCGCGA+AGG | + | chr1_4:4235626-4235645 | None:intergenic | 45.0% | |
| AACAAGAACAAGAATGGCGG+CGG | - | chr1_4:4235758-4235777 | Msa0144620:intron | 45.0% | |
| AAAAACAACAACGTTGGCGG+CGG | - | chr1_4:4235798-4235817 | Msa0144620:intron | 45.0% | |
| GGAATCCAACGTCGGAAAAA+TGG | + | chr1_4:4235831-4235850 | None:intergenic | 45.0% | |
| GCTTATGGGCCTGTTTAGAT+TGG | - | chr1_4:4236220-4236239 | Msa0144620:CDS | 45.0% | |
| AACCACCTCACTCTTGAATC+AGG | + | chr1_4:4236801-4236820 | None:intergenic | 45.0% | |
| GTTCATCTAGCAATGAACCG+CGG | - | chr1_4:4236823-4236842 | Msa0144620:intron | 45.0% | |
| CCGTGAACCATTACCAATGT+AGG | + | chr1_4:4236888-4236907 | None:intergenic | 45.0% | |
| !! | TGCTATAACTCTGAAACGCG+AGG | + | chr1_4:4236958-4236977 | None:intergenic | 45.0% |
| ACTGTATAGAAACCGAGGCT+TGG | - | chr1_4:4237374-4237393 | Msa0144620:five_prime_UTR | 45.0% | |
| AGAATCGATGAACCAAGCCT+CGG | + | chr1_4:4237389-4237408 | None:intergenic | 45.0% | |
| GAAAGAAAGCAAGCTTACGC+GGG | + | chr1_4:4235597-4235616 | None:intergenic | 45.0% | |
| AAGAAGAAGAAGAACCGCGA+AGG | + | chr1_4:4235626-4235645 | None:intergenic | 45.0% | |
| AACAAGAACAAGAATGGCGG+CGG | - | chr1_4:4235758-4235777 | Msa0144620:intron | 45.0% | |
| AAAAACAACAACGTTGGCGG+CGG | - | chr1_4:4235798-4235817 | Msa0144620:intron | 45.0% | |
| GGAATCCAACGTCGGAAAAA+TGG | + | chr1_4:4235831-4235850 | None:intergenic | 45.0% | |
| GCTTATGGGCCTGTTTAGAT+TGG | - | chr1_4:4236220-4236239 | Msa0144620:CDS | 45.0% | |
| AACCACCTCACTCTTGAATC+AGG | + | chr1_4:4236801-4236820 | None:intergenic | 45.0% | |
| GTTCATCTAGCAATGAACCG+CGG | - | chr1_4:4236823-4236842 | Msa0144620:intron | 45.0% | |
| CCGTGAACCATTACCAATGT+AGG | + | chr1_4:4236888-4236907 | None:intergenic | 45.0% | |
| !! | TGCTATAACTCTGAAACGCG+AGG | + | chr1_4:4236958-4236977 | None:intergenic | 45.0% |
| ACTGTATAGAAACCGAGGCT+TGG | - | chr1_4:4237374-4237393 | Msa0144620:five_prime_UTR | 45.0% | |
| AGAATCGATGAACCAAGCCT+CGG | + | chr1_4:4237389-4237408 | None:intergenic | 45.0% | |
| !!! | TCTGGCCATTTTTCCGACGT+TGG | - | chr1_4:4235823-4235842 | Msa0144620:intron | 50.0% |
| GTCCACCTGATTCAAGAGTG+AGG | - | chr1_4:4236793-4236812 | Msa0144620:intron | 50.0% | |
| CACCTCACTCTTGAATCAGG+TGG | + | chr1_4:4236798-4236817 | None:intergenic | 50.0% | |
| CACCTGATTCAAGAGTGAGG+TGG | - | chr1_4:4236796-4236815 | Msa0144620:intron | 50.0% | |
| TCACGGATATGCTGCATCAC+AGG | - | chr1_4:4236902-4236921 | Msa0144620:intron | 50.0% | |
| CACGGATATGCTGCATCACA+GGG | - | chr1_4:4236903-4236922 | Msa0144620:intron | 50.0% | |
| !!! | TCTGGCCATTTTTCCGACGT+TGG | - | chr1_4:4235823-4235842 | Msa0144620:intron | 50.0% |
| GTCCACCTGATTCAAGAGTG+AGG | - | chr1_4:4236793-4236812 | Msa0144620:intron | 50.0% | |
| CACCTCACTCTTGAATCAGG+TGG | + | chr1_4:4236798-4236817 | None:intergenic | 50.0% | |
| CACCTGATTCAAGAGTGAGG+TGG | - | chr1_4:4236796-4236815 | Msa0144620:intron | 50.0% | |
| TCACGGATATGCTGCATCAC+AGG | - | chr1_4:4236902-4236921 | Msa0144620:intron | 50.0% | |
| CACGGATATGCTGCATCACA+GGG | - | chr1_4:4236903-4236922 | Msa0144620:intron | 50.0% | |
| CACTCTTATTGCAGCTGGGG+TGG | - | chr1_4:4237245-4237264 | Msa0144620:CDS | 55.0% | |
| CACTCTTATTGCAGCTGGGG+TGG | - | chr1_4:4237245-4237264 | Msa0144620:CDS | 55.0% | |
| ACAACGTTGGCGGCGGTTTC+TGG | - | chr1_4:4235805-4235824 | Msa0144620:intron | 60.0% | |
| ACAACGTTGGCGGCGGTTTC+TGG | - | chr1_4:4235805-4235824 | Msa0144620:intron | 60.0% | |
| GCGGCGGAAGACACGACTAC+CGG | - | chr1_4:4235774-4235793 | Msa0144620:intron | 65.0% | |
| GCAGCTGGGGTGGATCTAGC+AGG | - | chr1_4:4237255-4237274 | Msa0144620:CDS | 65.0% | |
| GCGGCGGAAGACACGACTAC+CGG | - | chr1_4:4235774-4235793 | Msa0144620:intron | 65.0% | |
| GCAGCTGGGGTGGATCTAGC+AGG | - | chr1_4:4237255-4237274 | Msa0144620:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 4235553 | 4237459 | 4235553 | ID=Msa0144620;Name=Msa0144620 |
| chr1_4 | mRNA | 4235553 | 4237459 | 4235553 | ID=Msa0144620-mRNA-1;Parent=Msa0144620;Name=Msa0144620-mRNA-1;_AED=0.10;_eAED=0.10;_QI=173|0.66|0.5|1|1|1|4|0|179 |
| chr1_4 | exon | 4235553 | 4235629 | 4235553 | ID=Msa0144620-mRNA-1:exon:1739;Parent=Msa0144620-mRNA-1 |
| chr1_4 | exon | 4235707 | 4235753 | 4235707 | ID=Msa0144620-mRNA-1:exon:1738;Parent=Msa0144620-mRNA-1 |
| chr1_4 | exon | 4236021 | 4236257 | 4236021 | ID=Msa0144620-mRNA-1:exon:1737;Parent=Msa0144620-mRNA-1 |
| chr1_4 | exon | 4237108 | 4237459 | 4237108 | ID=Msa0144620-mRNA-1:exon:1736;Parent=Msa0144620-mRNA-1 |
| chr1_4 | five_prime_UTR | 4237287 | 4237459 | 4237287 | ID=Msa0144620-mRNA-1:five_prime_utr;Parent=Msa0144620-mRNA-1 |
| chr1_4 | CDS | 4237108 | 4237286 | 4237108 | ID=Msa0144620-mRNA-1:cds;Parent=Msa0144620-mRNA-1 |
| chr1_4 | CDS | 4236021 | 4236257 | 4236021 | ID=Msa0144620-mRNA-1:cds;Parent=Msa0144620-mRNA-1 |
| chr1_4 | CDS | 4235707 | 4235753 | 4235707 | ID=Msa0144620-mRNA-1:cds;Parent=Msa0144620-mRNA-1 |
| chr1_4 | CDS | 4235553 | 4235629 | 4235553 | ID=Msa0144620-mRNA-1:cds;Parent=Msa0144620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
