AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1077070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077070 MtrunA17_Chr7g0261291 98.124 533 2 1 1 525 1 533 0.0 1077
Msa1077070 MtrunA17_Chr1g0193681 70.235 383 67 4 5 384 11 349 1.25e-171 488
Msa1077070 MtrunA17_Chr1g0187741 65.789 76 26 0 102 177 1 76 4.68e-28 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1077070 AT1G65660.1 81.273 534 90 2 1 524 1 534 0.0 889
Msa1077070 AT4G37120.1 77.528 534 110 2 1 524 1 534 0.0 850
Msa1077070 AT3G45950.1 70.959 365 88 4 1 356 1 356 0.0 521

Find 170 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATTGATTGTTCTATTTC+TGG 0.093414 7_2:+75634892 Msa1077070:three_prime_UTR
CGAAGAATCACACTCCAATT+TGG 0.190205 7_2:-75629497 None:intergenic
CTGAAGATGAAGATGATTTA+AGG 0.203780 7_2:+75632123 Msa1077070:CDS
ATGCACCTTTCCTATACTTC+TGG 0.255412 7_2:-75630981 None:intergenic
CTTGACCACTACTTCTATAT+TGG 0.255478 7_2:-75632619 None:intergenic
TTGCAGCACCCTCATCATTT+TGG 0.262971 7_2:-75632091 None:intergenic
ATGACATATACTGAGGAATA+TGG 0.265173 7_2:-75630055 None:intergenic
CTCTGCGTTTGATTATAAAA+TGG 0.271266 7_2:+75629552 Msa1077070:exon
TTCACGCATGGACCTGGTCT+TGG 0.298183 7_2:-75632438 None:intergenic
TATAAAATGGCAACAGCTTC+AGG 0.301687 7_2:+75629565 Msa1077070:exon
TCATCCAGAACTACGTCTTC+TGG 0.306664 7_2:-75633916 None:intergenic
TCACGCATGGACCTGGTCTT+GGG 0.314163 7_2:-75632437 None:intergenic
CAACAACCACACAACTGTTT+GGG 0.315023 7_2:+75633528 Msa1077070:CDS
ACTTCCAAGAGAACTTCTTC+TGG 0.324372 7_2:+75632832 Msa1077070:CDS
GCTTGCCGATGCACTCAAAA+AGG 0.330113 7_2:+75633945 Msa1077070:CDS
ATCCTCTTCATACTTGCTTC+TGG 0.330708 7_2:-75633497 None:intergenic
GGCCTCTCCAAGCTTAGTTC+AGG 0.350587 7_2:-75634556 None:intergenic
CTATGTCTTTGAGAAACCTT+AGG 0.353465 7_2:+75634823 Msa1077070:three_prime_UTR
TCAACAACCACACAACTGTT+TGG 0.359011 7_2:+75633527 Msa1077070:CDS
GAAGAATCACACTCCAATTT+GGG 0.359624 7_2:-75629496 None:intergenic
ACAGGTAACTCAAGAGGATA+TGG 0.365679 7_2:+75634482 Msa1077070:intron
TAAGCTTGGAGAGGCCAAAA+AGG 0.370857 7_2:+75634563 Msa1077070:three_prime_UTR
TGCACCTTTCCTATACTTCT+GGG 0.379997 7_2:-75630980 None:intergenic
TCCTCTTCATACTTGCTTCT+GGG 0.380155 7_2:-75633496 None:intergenic
AGAATTGCCATGAACAACTA+TGG 0.385975 7_2:-75635235 None:intergenic
GGAACAACAGCTGAAGAGAT+TGG 0.387586 7_2:+75632058 Msa1077070:CDS
GACACTATTATTGAGAAGTA+TGG 0.392536 7_2:+75632788 Msa1077070:CDS
AGTGACCTAAAATCCCAAAT+TGG 0.394044 7_2:+75629483 Msa1077070:five_prime_UTR
TTTGTGTTTGTTACAATTGA+GGG 0.395569 7_2:-75635154 None:intergenic
GAGAAGCGTGTGCGAACAAC+AGG 0.403536 7_2:+75632197 Msa1077070:CDS
GTTTGAAACATCAAAGGAAA+TGG 0.413225 7_2:+75630899 Msa1077070:intron
TGGTCAAGCTTTGGAATTCA+AGG 0.415510 7_2:+75632634 Msa1077070:CDS
TAGAAGTAGTGGTCAAGCTT+TGG 0.419742 7_2:+75632625 Msa1077070:CDS
TCGTGCTGGTAGAATTGTTA+AGG 0.421506 7_2:+75632883 Msa1077070:CDS
TCCCTTGTCAAATGCTTCCC+AGG 0.423430 7_2:-75632672 None:intergenic
AAAGAAGCCATAGTTGTTCA+TGG 0.429918 7_2:+75635228 Msa1077070:three_prime_UTR
TGAAGATGAAGATGATTTAA+GGG 0.430484 7_2:+75632124 Msa1077070:CDS
CTACTAGCATATACTTGAAC+TGG 0.431267 7_2:-75634865 None:intergenic
ATTACTCTATAAGAATTTCA+AGG 0.432870 7_2:+75632733 Msa1077070:CDS
ATTTGTGTTTGTTACAATTG+AGG 0.436797 7_2:-75635155 None:intergenic
TGTTCCAGAAGACGTAGTTC+TGG 0.437289 7_2:+75633912 Msa1077070:CDS
ACGGCGAGGTTTAAATGAAC+TGG 0.437833 7_2:-75635111 None:intergenic
CTCAAGCTGCCAAGAGGAAT+GGG 0.438846 7_2:+75634629 Msa1077070:three_prime_UTR
TGACATATACTGAGGAATAT+GGG 0.442110 7_2:-75630054 None:intergenic
CTTATAGAGTAATTCAGCTT+GGG 0.445002 7_2:-75632723 None:intergenic
AGCTTGACTATGATGGCAAA+CGG 0.446023 7_2:+75631946 Msa1077070:CDS
CTTCCAAGAGAACTTCTTCT+GGG 0.446100 7_2:+75632833 Msa1077070:CDS
CGCTCGAAAGAAGTTCTTGA+AGG 0.450188 7_2:+75632037 Msa1077070:CDS
AACCTCAGCAGGTGCAAGTC+CGG 0.450714 7_2:-75630006 None:intergenic
TTTGGATCTGCCTCTGGAAG+AGG 0.454768 7_2:-75632464 None:intergenic
TGACCCAGAAGAAGTTCTCT+TGG 0.456809 7_2:-75632836 None:intergenic
CTTCTTTCGAGCGTCGTCTC+GGG 0.457445 7_2:-75632027 None:intergenic
AGCTATTGCACTGGTGCTGC+TGG 0.461250 7_2:+75633610 Msa1077070:CDS
CACTGGTGCTGCTGGTATTG+AGG 0.461483 7_2:+75633618 Msa1077070:CDS
ACACAACTGTTTGGGGATCA+TGG 0.464457 7_2:+75633536 Msa1077070:CDS
TGGTCTTTCCATGCATGCCT+TGG 0.468273 7_2:-75631859 None:intergenic
GCACATTGCTGCTGATGAAA+AGG 0.477662 7_2:+75631911 Msa1077070:CDS
ACTTCTTTCGAGCGTCGTCT+CGG 0.480273 7_2:-75632028 None:intergenic
CTAAACCAATAGAAGAGAAA+AGG 0.482314 7_2:+75633869 Msa1077070:CDS
GAAATTGAAGTCTCAAACAA+AGG 0.483456 7_2:+75632766 Msa1077070:CDS
CATTTGCCTTAGTGACCCTA+AGG 0.483590 7_2:-75634839 None:intergenic
AGAGAAAAGGCCTGCTACAT+GGG 0.485089 7_2:+75633882 Msa1077070:CDS
CCATCTTCATCAACCTCAGC+AGG 0.485535 7_2:-75630017 None:intergenic
ATTGAGGCTGCTGAGGCTGC+AGG 0.490119 7_2:+75633634 Msa1077070:CDS
TGCTTTGCTCCTACTTTCCG+TGG 0.491979 7_2:-75631879 None:intergenic
AGGACTTAAACATCCATGCC+TGG 0.493322 7_2:+75632654 Msa1077070:CDS
TTGCAGTGGCATTCAAGTCC+AGG 0.496260 7_2:+75629940 Msa1077070:intron
TCTTATAGAGTAATTCAGCT+TGG 0.499036 7_2:-75632724 None:intergenic
AATACCGTTGTGTTGATGAA+TGG 0.500800 7_2:+75635195 Msa1077070:three_prime_UTR
TACACTCTGCCCATTCCTCT+TGG 0.502379 7_2:-75634638 None:intergenic
ACATCAGTTCCCCATGTAGC+AGG 0.504075 7_2:-75633892 None:intergenic
AAGAGGATATGGAGGCATAC+AGG 0.504821 7_2:+75634493 Msa1077070:CDS
AAGAGAAAAGGCCTGCTACA+TGG 0.505586 7_2:+75633881 Msa1077070:CDS
ACAACAGGCGGTGGGAGTAC+AGG 0.505697 7_2:+75632212 Msa1077070:CDS
GCACGTAAGGAGTCTGCTGC+AGG 0.507882 7_2:+75633679 Msa1077070:CDS
TACCATGATGTGGTGTAGTT+GGG 0.511009 7_2:-75630931 None:intergenic
CACAACGGTATTTGAGACAT+AGG 0.511526 7_2:-75635184 None:intergenic
GAGAAACCTTAGGGTCACTA+AGG 0.512960 7_2:+75634833 Msa1077070:three_prime_UTR
TGCTGGTATTGAGGCTGCTG+AGG 0.513900 7_2:+75633627 Msa1077070:CDS
TCTCAAGCTGCCAAGAGGAA+TGG 0.516628 7_2:+75634628 Msa1077070:three_prime_UTR
ACCACATCATGGTACGATAG+AGG 0.520950 7_2:+75630940 Msa1077070:CDS
TATGTCTTTGAGAAACCTTA+GGG 0.521014 7_2:+75634824 Msa1077070:three_prime_UTR
CTTGAGGAAGCTCGTAAAGC+CGG 0.521296 7_2:+75629987 Msa1077070:CDS
AGGATCTTCACGCATGGACC+TGG 0.521551 7_2:-75632444 None:intergenic
CGTGCTGGTAGAATTGTTAA+GGG 0.521936 7_2:+75632884 Msa1077070:CDS
TGTCAAATGCTTCCCAGGCA+TGG 0.522883 7_2:-75632667 None:intergenic
TAATGTCAGATGGAATGATC+AGG 0.524179 7_2:+75634376 Msa1077070:CDS
TGTTAAAGATATAACAAGAC+TGG 0.524634 7_2:+75634979 Msa1077070:three_prime_UTR
GAGAGCTAATATTGCACGTA+AGG 0.524660 7_2:+75633666 Msa1077070:CDS
ACATAATGCCAAGGCATGCA+TGG 0.526072 7_2:+75631851 Msa1077070:CDS
TGGTAGAATTGTTAAGGGAC+AGG 0.528512 7_2:+75632889 Msa1077070:CDS
CCTCTTCATACTTGCTTCTG+GGG 0.531693 7_2:-75633495 None:intergenic
TTCTTCTGGGTCAGAGTGAG+AGG 0.533851 7_2:+75632846 Msa1077070:CDS
GCTTGACTATGATGGCAAAC+GGG 0.536202 7_2:+75631947 Msa1077070:CDS
AGCGTAAATATAATGTCAGA+TGG 0.536290 7_2:+75634366 Msa1077070:CDS
GTACCATGATGTGGTGTAGT+TGG 0.538558 7_2:-75630932 None:intergenic
CACGCATGGACCTGGTCTTG+GGG 0.541517 7_2:-75632436 None:intergenic
ATGATGGCAAACGGGACAGA+TGG 0.550124 7_2:+75631955 Msa1077070:CDS
TCGAAAACAGATTGAGCTTG+AGG 0.551968 7_2:+75629971 Msa1077070:CDS
GGTTGATGAAAGCAAACAGA+TGG 0.552756 7_2:+75632160 Msa1077070:CDS
CACATTATGACCCCAAGACC+AGG 0.553071 7_2:+75632426 Msa1077070:CDS
TAAGAATTTCAAGGTCATGA+AGG 0.554860 7_2:+75632742 Msa1077070:CDS
GAGAACATCACAAAGGCTTG+TGG 0.558764 7_2:-75634609 None:intergenic
TGCAGCATTTAAAACCCCAC+TGG 0.564956 7_2:-75633570 None:intergenic
CAAGTTGAGTATGATCGTGC+TGG 0.565861 7_2:+75632869 Msa1077070:CDS
ATGGAAAGACCACGGAAAGT+AGG 0.568977 7_2:+75631870 Msa1077070:CDS
CCTGCTGAGGTTGATGAAGA+TGG 0.573554 7_2:+75630017 Msa1077070:CDS
CAGCTGAAGAGATTGGAGAA+GGG 0.574722 7_2:+75632065 Msa1077070:CDS
AGCCGGACTTGCACCTGCTG+AGG 0.576370 7_2:+75630004 Msa1077070:CDS
CAAAGACATAGTAAAATGAT+CGG 0.578786 7_2:-75634811 None:intergenic
CGTGTGCGAACAACAGGCGG+TGG 0.578917 7_2:+75632203 Msa1077070:CDS
TGGAAGAGGATCTTCACGCA+TGG 0.581895 7_2:-75632450 None:intergenic
GATAACCAATATAGAAGTAG+TGG 0.583553 7_2:+75632614 Msa1077070:CDS
TGTAGAGTTTGAAACATCAA+AGG 0.584746 7_2:+75630893 Msa1077070:intron
ACAGCTGAAGAGATTGGAGA+AGG 0.585982 7_2:+75632064 Msa1077070:CDS
GGCAAACGGGACAGATGGAA+TGG 0.586064 7_2:+75631960 Msa1077070:CDS
CCCCAGAAGCAAGTATGAAG+AGG 0.586559 7_2:+75633495 Msa1077070:CDS
GGACTTAAACATCCATGCCT+GGG 0.588939 7_2:+75632655 Msa1077070:CDS
TTGATATTTGAACAGCCTTG+TGG 0.589335 7_2:+75634694 Msa1077070:three_prime_UTR
ATCCCAACTACACCACATCA+TGG 0.592083 7_2:+75630929 Msa1077070:CDS
TTCCTGAACTAAGCTTGGAG+AGG 0.594079 7_2:+75634554 Msa1077070:exon
TAGAGTAATTCAGCTTGGGA+AGG 0.595348 7_2:-75632719 None:intergenic
AGAGAGAAGAGAAAGATGAG+AGG 0.596130 7_2:+75634342 Msa1077070:CDS
TGTGTTTGTTACAATTGAGG+GGG 0.596183 7_2:-75635152 None:intergenic
ACCTCTATCGTACCATGATG+TGG 0.597844 7_2:-75630941 None:intergenic
GTGTATGATCAGCGAGAAAG+CGG 0.598674 7_2:+75634656 Msa1077070:three_prime_UTR
TTGTGTTTGTTACAATTGAG+GGG 0.599697 7_2:-75635153 None:intergenic
ATACGTAATAGCTATTGCAC+TGG 0.600890 7_2:+75633601 Msa1077070:CDS
CAAACAGATGGACTTTGCAA+AGG 0.601027 7_2:+75632172 Msa1077070:CDS
TGCAGTGGCATTCAAGTCCA+GGG 0.602123 7_2:+75629941 Msa1077070:intron
GACATATACTGAGGAATATG+GGG 0.605217 7_2:-75630053 None:intergenic
ATCCAAACAGGTAACTCAAG+AGG 0.609923 7_2:+75634476 Msa1077070:intron
GAAGGGCGACCAAAATGATG+AGG 0.610286 7_2:+75632082 Msa1077070:CDS
GTATGGCAATGCAGCTGACG+AGG 0.612655 7_2:+75632805 Msa1077070:CDS
GTGTGCGAACAACAGGCGGT+GGG 0.617858 7_2:+75632204 Msa1077070:CDS
ATGGTGGAAGGATCACCAGT+GGG 0.619263 7_2:+75633555 Msa1077070:CDS
AACAACCACACAACTGTTTG+GGG 0.624985 7_2:+75633529 Msa1077070:CDS
CAGGCCCAGAAGTATAGGAA+AGG 0.625900 7_2:+75630976 Msa1077070:CDS
AGCTATGACACATAATGCCA+AGG 0.626277 7_2:+75631842 Msa1077070:CDS
TTTAAGGGTAGACGAGGCAA+AGG 0.628328 7_2:+75632139 Msa1077070:CDS
TGTTTGGGGATCATGGTGGA+AGG 0.634183 7_2:+75633543 Msa1077070:CDS
TCGGTATACACATGTAACGT+TGG 0.641320 7_2:-75634792 None:intergenic
GAGAAAAGGCCTGCTACATG+GGG 0.647269 7_2:+75633883 Msa1077070:CDS
TGCCTGGGAAGCATTTGACA+AGG 0.649459 7_2:+75632670 Msa1077070:CDS
AAGCGTGTGCGAACAACAGG+CGG 0.649651 7_2:+75632200 Msa1077070:CDS
TGAGGTTGATGAAGATGGCA+AGG 0.654532 7_2:+75630022 Msa1077070:CDS
GATGTTCTCAAGCTGCCAAG+AGG 0.658614 7_2:+75634623 Msa1077070:three_prime_UTR
CAGTATCCTCTCGAATACGT+AGG 0.658694 7_2:-75632370 None:intergenic
CTTTGAAATGAAATGAACAC+AGG 0.659647 7_2:-75634586 None:intergenic
AAGGGCGACCAAAATGATGA+GGG 0.664419 7_2:+75632083 Msa1077070:CDS
GGTAACTCAAGAGGATATGG+AGG 0.664968 7_2:+75634485 Msa1077070:intron
GCGTGAAGATCCTCTTCCAG+AGG 0.666737 7_2:+75632454 Msa1077070:CDS
ACAAGATGTTCACATGCAAG+CGG 0.667127 7_2:+75632694 Msa1077070:CDS
CATAGTACTAACAAGCCACA+AGG 0.668967 7_2:-75634709 None:intergenic
CAGGAACCTACGTATTCGAG+AGG 0.670022 7_2:+75632364 Msa1077070:intron
GCCTGGGAAGCATTTGACAA+GGG 0.670926 7_2:+75632671 Msa1077070:CDS
AGCGAGAAAGCGGAACAGAG+TGG 0.680060 7_2:+75634666 Msa1077070:three_prime_UTR
GCAGCTTGAGAACATCACAA+AGG 0.680676 7_2:-75634616 None:intergenic
AGGCATGCATGGAAAGACCA+CGG 0.681793 7_2:+75631862 Msa1077070:CDS
AGATGATTTAAGGGTAGACG+AGG 0.685583 7_2:+75632133 Msa1077070:CDS
CATGGTGGAAGGATCACCAG+TGG 0.694013 7_2:+75633554 Msa1077070:CDS
TGAGGGTGCTGCAATTGATG+AGG 0.706358 7_2:+75632100 Msa1077070:CDS
CAACTGTTTGGGGATCATGG+TGG 0.707930 7_2:+75633539 Msa1077070:CDS
ATAAAGAACAGATATAACAA+CGG 0.710049 7_2:-75634759 None:intergenic
GGCGCAGATGACATATACTG+AGG 0.723810 7_2:-75630062 None:intergenic
ATGATCCCCAAACAGTTGTG+TGG 0.732411 7_2:-75633534 None:intergenic
TGGTGGAAGGATCACCAGTG+GGG 0.736678 7_2:+75633556 Msa1077070:CDS
GTGGGAGTACAGGAACTGTG+AGG 0.740528 7_2:+75632222 Msa1077070:CDS
AAAACCATTCATCAACACAA+CGG 0.744114 7_2:-75635199 None:intergenic
AGTGGCATTCAAGTCCAGGG+AGG 0.776072 7_2:+75629944 Msa1077070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTTAGTTAATGT+AGG + chr7_2:75631423-75631442 Msa1077070:intron 10.0%
!! TAATTAATTTAGTTAATGTA+GGG + chr7_2:75631424-75631443 Msa1077070:intron 10.0%
!! TCATTTAAAAAAAAAATTGA+AGG - chr7_2:75633266-75633285 None:intergenic 10.0%
!!! AAAATAATTTGCATTGATAA+AGG - chr7_2:75629659-75629678 None:intergenic 15.0%
!! GTTAAATTACAATTAAAAAG+AGG - chr7_2:75629842-75629861 None:intergenic 15.0%
!! ATGTTAATGAAATTTGTATT+CGG + chr7_2:75629913-75629932 Msa1077070:intron 15.0%
!! ACAAAATAAAATCTAGTATT+TGG + chr7_2:75631103-75631122 Msa1077070:intron 15.0%
!!! TGTTTTTGTTTTTATTTTGT+AGG + chr7_2:75632589-75632608 Msa1077070:intron 15.0%
!!! GTTTTTGTTTTTATTTTGTA+GGG + chr7_2:75632590-75632609 Msa1077070:intron 15.0%
!! TAAAAAAAAAATTGAAGGTA+CGG - chr7_2:75633261-75633280 None:intergenic 15.0%
!! AAGAGTAAAAAAAATATATG+TGG - chr7_2:75633988-75634007 None:intergenic 15.0%
!!! AATAATTATTTTTTGGATCA+CGG - chr7_2:75634936-75634955 None:intergenic 15.0%
!!! AAAAAATTACAATGTTGTTT+TGG + chr7_2:75635069-75635088 Msa1077070:three_prime_UTR 15.0%
!! AAAAGGATTGAAATTGAATT+GGG - chr7_2:75629605-75629624 None:intergenic 20.0%
!! TAAAAGGATTGAAATTGAAT+TGG - chr7_2:75629606-75629625 None:intergenic 20.0%
!!! AATTTTGGTTAAACTTGATT+AGG + chr7_2:75629763-75629782 Msa1077070:intron 20.0%
!!! ATTTTGGTTAAACTTGATTA+GGG + chr7_2:75629764-75629783 Msa1077070:intron 20.0%
!! ACTAATAAAGGAAAGTAATA+TGG - chr7_2:75630132-75630151 None:intergenic 20.0%
!! TCATCTCAAAAAACTAATAA+AGG - chr7_2:75630144-75630163 None:intergenic 20.0%
!!! TCTTCAATAATAGTTTTTCT+AGG - chr7_2:75630283-75630302 None:intergenic 20.0%
!! AATATGACAATTATCAATTG+TGG - chr7_2:75630827-75630846 None:intergenic 20.0%
!! TACAAGATAATATTATTGCA+AGG + chr7_2:75631474-75631493 Msa1077070:intron 20.0%
!! GAACTGATAATTGTAATTAA+CGG - chr7_2:75632298-75632317 None:intergenic 20.0%
!! ATTACTCTATAAGAATTTCA+AGG + chr7_2:75632733-75632752 Msa1077070:CDS 20.0%
!!! ATTAAGAAGCTTTAAAGTAT+GGG - chr7_2:75633023-75633042 None:intergenic 20.0%
!! AAATAGTAAAAAAATGTGTC+AGG - chr7_2:75633150-75633169 None:intergenic 20.0%
!!! AAAAAAAAAATTGAAGGTAC+GGG - chr7_2:75633260-75633279 None:intergenic 20.0%
!!! CTTCTTTTATGTTTGATAAT+TGG + chr7_2:75633770-75633789 Msa1077070:intron 20.0%
!!! CAATATTTAGTTTGAATCAA+TGG - chr7_2:75634179-75634198 None:intergenic 20.0%
!! ATAAAGAACAGATATAACAA+CGG - chr7_2:75634762-75634781 None:intergenic 20.0%
!! GTAATGTTTGAAAAAAAGAA+CGG - chr7_2:75635133-75635152 None:intergenic 20.0%
! AAAGGATTGAAATTGAATTG+GGG - chr7_2:75629604-75629623 None:intergenic 25.0%
! AGAGAACGAAAATTTGTAAA+AGG - chr7_2:75629622-75629641 None:intergenic 25.0%
!! CAATTCAAAAGTACATGATT+AGG - chr7_2:75629864-75629883 None:intergenic 25.0%
! TTAATGAAATTTGTATTCGG+TGG + chr7_2:75629916-75629935 Msa1077070:intron 25.0%
! AATAAAGGAAAGTAATATGG+AGG - chr7_2:75630129-75630148 None:intergenic 25.0%
! AAACTATTAAGAAGATCTAG+AGG - chr7_2:75630595-75630614 None:intergenic 25.0%
! TGCAAAATATTGTGAAATAG+TGG + chr7_2:75630704-75630723 Msa1077070:intron 25.0%
!!! ACTGATTTTGTTGGATATAT+GGG + chr7_2:75631333-75631352 Msa1077070:intron 25.0%
!! CATATTTGGTTTATAAGTAC+TGG + chr7_2:75631394-75631413 Msa1077070:intron 25.0%
! ACTATATAACAAAACTGTCA+AGG + chr7_2:75631691-75631710 Msa1077070:intron 25.0%
! CTACTTAATATATGTTGAGA+CGG - chr7_2:75631589-75631608 None:intergenic 25.0%
! TGAAGATGAAGATGATTTAA+GGG + chr7_2:75632124-75632143 Msa1077070:CDS 25.0%
! GTAAATATATCTTAACCTTC+AGG + chr7_2:75632345-75632364 Msa1077070:intron 25.0%
!! TCCAAATGAAAAGTTTTACT+TGG + chr7_2:75632481-75632500 Msa1077070:CDS 25.0%
!! ACCAAGTAAAACTTTTCATT+TGG - chr7_2:75632485-75632504 None:intergenic 25.0%
!!! GATTAAGAAGCTTTAAAGTA+TGG - chr7_2:75633024-75633043 None:intergenic 25.0%
! TAGAATTGAACGAAAATCAA+TGG - chr7_2:75633393-75633412 None:intergenic 25.0%
!! ATTCTAAGCATTATGCTTTT+AGG + chr7_2:75633407-75633426 Msa1077070:intron 25.0%
!! ATTTATCTGTTGCTTCTAAT+AGG + chr7_2:75633462-75633481 Msa1077070:intron 25.0%
! TTAATAACAAAGAGAAGAGA+AGG - chr7_2:75633747-75633766 None:intergenic 25.0%
!! TTTATGTTTGATAATTGGTG+TGG + chr7_2:75633775-75633794 Msa1077070:intron 25.0%
! AATAGAACTCATTAACATCA+AGG - chr7_2:75634071-75634090 None:intergenic 25.0%
!! TTTTCTTATTCTATCTTCTG+TGG + chr7_2:75634095-75634114 Msa1077070:intron 25.0%
! TAGCATAAAGTCATTTATTC+TGG + chr7_2:75634242-75634261 Msa1077070:intron 25.0%
! AAACGATTTAAAAATCTGCA+AGG - chr7_2:75634454-75634473 None:intergenic 25.0%
!!! TAAATCGTTTTAATCCAAAC+AGG + chr7_2:75634464-75634483 Msa1077070:intron 25.0%
! TTCAGGAAAAATTCTTCATT+GGG - chr7_2:75634542-75634561 None:intergenic 25.0%
!!! CTATGCATTATTTTAGCATT+TGG + chr7_2:75634727-75634746 Msa1077070:three_prime_UTR 25.0%
! CAAAGACATAGTAAAATGAT+CGG - chr7_2:75634814-75634833 None:intergenic 25.0%
!! ACTATTGATTGTTCTATTTC+TGG + chr7_2:75634892-75634911 Msa1077070:three_prime_UTR 25.0%
! TGTTAAAGATATAACAAGAC+TGG + chr7_2:75634979-75634998 Msa1077070:three_prime_UTR 25.0%
!! TTTGTGTTTGTTACAATTGA+GGG - chr7_2:75635157-75635176 None:intergenic 25.0%
!! ATTTGTGTTTGTTACAATTG+AGG - chr7_2:75635158-75635177 None:intergenic 25.0%
CTCTGCGTTTGATTATAAAA+TGG + chr7_2:75629552-75629571 Msa1077070:exon 30.0%
AAGGATTGAAATTGAATTGG+GGG - chr7_2:75629603-75629622 None:intergenic 30.0%
TCTGAATTGGATCAAAAAGA+TGG - chr7_2:75629704-75629723 None:intergenic 30.0%
TGACATATACTGAGGAATAT+GGG - chr7_2:75630057-75630076 None:intergenic 30.0%
ATGACATATACTGAGGAATA+TGG - chr7_2:75630058-75630077 None:intergenic 30.0%
!!! TTTTTTGAGATGAGAGAGTT+GGG + chr7_2:75630151-75630170 Msa1077070:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG + chr7_2:75630300-75630319 Msa1077070:intron 30.0%
AATAACAACAACAACAACCA+AGG - chr7_2:75630401-75630420 None:intergenic 30.0%
TTGTTGTAATAGTGCTATAG+CGG - chr7_2:75630475-75630494 None:intergenic 30.0%
! TGGTTTTCGATAGAATACTA+TGG - chr7_2:75630551-75630570 None:intergenic 30.0%
!!! GTTTCTCTTCTAGTTTTTCT+AGG + chr7_2:75630611-75630630 Msa1077070:intron 30.0%
AATTATCAATTGTGGATCAC+AGG - chr7_2:75630774-75630793 None:intergenic 30.0%
CACATGACAATTATCAATTG+TGG - chr7_2:75630782-75630801 None:intergenic 30.0%
GTTTCAAACTCTACATTTGA+AGG - chr7_2:75630888-75630907 None:intergenic 30.0%
! TGTAGAGTTTGAAACATCAA+AGG + chr7_2:75630893-75630912 Msa1077070:intron 30.0%
! GTTTGAAACATCAAAGGAAA+TGG + chr7_2:75630899-75630918 Msa1077070:intron 30.0%
!! TGTATTTTTCGATGTGTTAG+TGG + chr7_2:75631136-75631155 Msa1077070:intron 30.0%
CAAAAACCATGTATTAATCC+AGG - chr7_2:75631295-75631314 None:intergenic 30.0%
ATCCAACAAAATCAGTCAAA+AGG - chr7_2:75631329-75631348 None:intergenic 30.0%
!! GACTGATTTTGTTGGATATA+TGG + chr7_2:75631332-75631351 Msa1077070:intron 30.0%
! TATGGGTTGAATTGCATATT+AGG + chr7_2:75631350-75631369 Msa1077070:intron 30.0%
ATAATATTATTGCAAGGCGA+AGG + chr7_2:75631480-75631499 Msa1077070:intron 30.0%
TAATATTATTGCAAGGCGAA+GGG + chr7_2:75631481-75631500 Msa1077070:intron 30.0%
! CATTTGCTTTGTTATAGAGT+TGG + chr7_2:75631551-75631570 Msa1077070:intron 30.0%
TTATAGAGTTGGAATGAGAA+TGG + chr7_2:75631562-75631581 Msa1077070:intron 30.0%
AATATATGTTGAGACAAGCA+AGG + chr7_2:75631595-75631614 Msa1077070:intron 30.0%
!! TTGACAATTCAAGTTTGCTA+AGG - chr7_2:75631656-75631675 None:intergenic 30.0%
AATATATGTTGAGACAAGCA+AGG - chr7_2:75631595-75631614 None:intergenic 30.0%
! TCATCTTCTTTTTATAGCTG+CGG + chr7_2:75631819-75631838 Msa1077070:intron 30.0%
CTGAAGATGAAGATGATTTA+AGG + chr7_2:75632123-75632142 Msa1077070:CDS 30.0%
TGCGTGTTAATCTTTGTATT+TGG + chr7_2:75632557-75632576 Msa1077070:intron 30.0%
GCGTGTTAATCTTTGTATTT+GGG + chr7_2:75632558-75632577 Msa1077070:intron 30.0%
GATAACCAATATAGAAGTAG+TGG + chr7_2:75632614-75632633 Msa1077070:CDS 30.0%
CTTATAGAGTAATTCAGCTT+GGG - chr7_2:75632726-75632745 None:intergenic 30.0%
TCTTATAGAGTAATTCAGCT+TGG - chr7_2:75632727-75632746 None:intergenic 30.0%
TAAGAATTTCAAGGTCATGA+AGG + chr7_2:75632742-75632761 Msa1077070:CDS 30.0%
GAAATTGAAGTCTCAAACAA+AGG + chr7_2:75632766-75632785 Msa1077070:CDS 30.0%
GACACTATTATTGAGAAGTA+TGG + chr7_2:75632788-75632807 Msa1077070:CDS 30.0%
! TCCGTTTGAAGTTAAATTTG+CGG + chr7_2:75633058-75633077 Msa1077070:intron 30.0%
! ACCGCAAATTTAACTTCAAA+CGG - chr7_2:75633062-75633081 None:intergenic 30.0%
!!! ATGATTTGCTCTTTTCATCA+AGG + chr7_2:75633362-75633381 Msa1077070:intron 30.0%
! ATTTTCTTGAATCTGTACAG+AGG + chr7_2:75633843-75633862 Msa1077070:intron 30.0%
!!! CTTTTCTCTTCTATTGGTTT+AGG - chr7_2:75633871-75633890 None:intergenic 30.0%
CTAAACCAATAGAAGAGAAA+AGG + chr7_2:75633869-75633888 Msa1077070:CDS 30.0%
!!! TATTACCTTTTTGAGTGCAT+CGG - chr7_2:75633953-75633972 None:intergenic 30.0%
TAAAAATATATACCCAGAGG+AGG - chr7_2:75634036-75634055 None:intergenic 30.0%
GAGTAAAAATATATACCCAG+AGG - chr7_2:75634039-75634058 None:intergenic 30.0%
! TGTCTAGACCTTGATAATTA+AGG - chr7_2:75634156-75634175 None:intergenic 30.0%
TGGATATTTGAATCTGTTTG+AGG + chr7_2:75634262-75634281 Msa1077070:intron 30.0%
AGCGTAAATATAATGTCAGA+TGG + chr7_2:75634366-75634385 Msa1077070:CDS 30.0%
GTTCAGGAAAAATTCTTCAT+TGG - chr7_2:75634543-75634562 None:intergenic 30.0%
! AATTTTTCCTGAACTAAGCT+TGG + chr7_2:75634549-75634568 Msa1077070:exon 30.0%
!! CTTTGAAATGAAATGAACAC+AGG - chr7_2:75634589-75634608 None:intergenic 30.0%
!! ATTTTAGCATTTGGAACACT+TGG + chr7_2:75634736-75634755 Msa1077070:three_prime_UTR 30.0%
! TATGTCTTTGAGAAACCTTA+GGG + chr7_2:75634824-75634843 Msa1077070:three_prime_UTR 30.0%
! TTGTGTTTGTTACAATTGAG+GGG - chr7_2:75635156-75635175 None:intergenic 30.0%
AAAACCATTCATCAACACAA+CGG - chr7_2:75635202-75635221 None:intergenic 30.0%
AGTGACCTAAAATCCCAAAT+TGG + chr7_2:75629483-75629502 Msa1077070:five_prime_UTR 35.0%
!! ACACTCCAATTTGGGATTTT+AGG - chr7_2:75629491-75629510 None:intergenic 35.0%
GAAGAATCACACTCCAATTT+GGG - chr7_2:75629499-75629518 None:intergenic 35.0%
TATAAAATGGCAACAGCTTC+AGG + chr7_2:75629565-75629584 Msa1077070:exon 35.0%
TCACGTTCTTGAATCTGAAT+TGG - chr7_2:75629717-75629736 None:intergenic 35.0%
GACATATACTGAGGAATATG+GGG - chr7_2:75630056-75630075 None:intergenic 35.0%
!!! GTTTTTTGAGATGAGAGAGT+TGG + chr7_2:75630150-75630169 Msa1077070:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr7_2:75630175-75630194 Msa1077070:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr7_2:75630178-75630197 Msa1077070:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr7_2:75630182-75630201 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + chr7_2:75630186-75630205 Msa1077070:intron 35.0%
! AGTCAGATCTTTAGAGACAA+AGG + chr7_2:75630253-75630272 Msa1077070:intron 35.0%
! TAATGAGTTGGAGAAAGACA+TGG - chr7_2:75630571-75630590 None:intergenic 35.0%
AGATCTAGAGGTTAATGAGT+TGG - chr7_2:75630583-75630602 None:intergenic 35.0%
AATAGCATATCGCAGAACAA+CGG - chr7_2:75630681-75630700 None:intergenic 35.0%
!!! TAGAGGTGCTAAAACTTTTC+AGG + chr7_2:75630957-75630976 Msa1077070:CDS 35.0%
CAAGATACATCCATCACATT+TGG - chr7_2:75631068-75631087 None:intergenic 35.0%
!! GACCTTTTGACTGATTTTGT+TGG + chr7_2:75631324-75631343 Msa1077070:intron 35.0%
TCTACTTTGCACTGCATATT+TGG + chr7_2:75631380-75631399 Msa1077070:intron 35.0%
! GTTATCAACCTTGACAGTTT+TGG + chr7_2:75631617-75631636 Msa1077070:intron 35.0%
! ACTTTTGAGCTTGACTATGA+TGG + chr7_2:75631939-75631958 Msa1077070:CDS 35.0%
TGCTCTCATTGTAATAATGC+AGG + chr7_2:75632257-75632276 Msa1077070:intron 35.0%
GCTCTCATTGTAATAATGCA+GGG + chr7_2:75632258-75632277 Msa1077070:intron 35.0%
CTTGACCACTACTTCTATAT+TGG - chr7_2:75632622-75632641 None:intergenic 35.0%
CAAACGGAATAATGAGAGAA+GGG - chr7_2:75633046-75633065 None:intergenic 35.0%
TCAAACGGAATAATGAGAGA+AGG - chr7_2:75633047-75633066 None:intergenic 35.0%
ACAAAGAAGCAATGATGCAT+AGG - chr7_2:75633324-75633343 None:intergenic 35.0%
!!! TTTAGGTTTTGCTGTTCGTT+AGG + chr7_2:75633424-75633443 Msa1077070:intron 35.0%
ATACGTAATAGCTATTGCAC+TGG + chr7_2:75633601-75633620 Msa1077070:CDS 35.0%
ATAACAAAGAGAAGAGAAGG+AGG - chr7_2:75633744-75633763 None:intergenic 35.0%
GGAGGTGATAACAAATATCA+AGG - chr7_2:75634018-75634037 None:intergenic 35.0%
!! ATATTTGTTATCACCTCCTC+TGG + chr7_2:75634020-75634039 Msa1077070:intron 35.0%
!! TATTTGTTATCACCTCCTCT+GGG + chr7_2:75634021-75634040 Msa1077070:intron 35.0%
TTCGTCTGCCTTAATTATCA+AGG + chr7_2:75634145-75634164 Msa1077070:intron 35.0%
TGTAATCTGTAGAAACGTGA+TGG + chr7_2:75634201-75634220 Msa1077070:intron 35.0%
!! TTGTACTGGTATTTTACAGG+AGG + chr7_2:75634310-75634329 Msa1077070:intron 35.0%
TAATGTCAGATGGAATGATC+AGG + chr7_2:75634376-75634395 Msa1077070:CDS 35.0%
CGATTTAAAAATCTGCAAGG+AGG - chr7_2:75634451-75634470 None:intergenic 35.0%
TTGATATTTGAACAGCCTTG+TGG + chr7_2:75634694-75634713 Msa1077070:three_prime_UTR 35.0%
! CTATGTCTTTGAGAAACCTT+AGG + chr7_2:75634823-75634842 Msa1077070:three_prime_UTR 35.0%
CTACTAGCATATACTTGAAC+TGG - chr7_2:75634868-75634887 None:intergenic 35.0%
! TGTGTTTGTTACAATTGAGG+GGG - chr7_2:75635155-75635174 None:intergenic 35.0%
! AATACCGTTGTGTTGATGAA+TGG + chr7_2:75635195-75635214 Msa1077070:three_prime_UTR 35.0%
AAAGAAGCCATAGTTGTTCA+TGG + chr7_2:75635228-75635247 Msa1077070:three_prime_UTR 35.0%
CGAAGAATCACACTCCAATT+TGG - chr7_2:75629500-75629519 None:intergenic 40.0%
ATGGTTTCAGCAAGATGTTC+GGG - chr7_2:75629685-75629704 None:intergenic 40.0%
GATGGTTTCAGCAAGATGTT+CGG - chr7_2:75629686-75629705 None:intergenic 40.0%
TCGAAAACAGATTGAGCTTG+AGG + chr7_2:75629971-75629990 Msa1077070:CDS 40.0%
GAAAAAACTTACGGGTCTCT+CGG - chr7_2:75630102-75630121 None:intergenic 40.0%
GAGGAGAGGAAAAAACTTAC+GGG - chr7_2:75630110-75630129 None:intergenic 40.0%
GGAGGAGAGGAAAAAACTTA+CGG - chr7_2:75630111-75630130 None:intergenic 40.0%
AGGAAAGTAATATGGAGGAG+AGG - chr7_2:75630124-75630143 None:intergenic 40.0%
TTGTGGATCACAGGAAATAG+TGG - chr7_2:75630765-75630784 None:intergenic 40.0%
TACCATGATGTGGTGTAGTT+GGG - chr7_2:75630934-75630953 None:intergenic 40.0%
TGCACCTTTCCTATACTTCT+GGG - chr7_2:75630983-75631002 None:intergenic 40.0%
ATGCACCTTTCCTATACTTC+TGG - chr7_2:75630984-75631003 None:intergenic 40.0%
GATACATCCATCACATTTGG+AGG - chr7_2:75631065-75631084 None:intergenic 40.0%
TACACGCCTGGATTAATACA+TGG + chr7_2:75631286-75631305 Msa1077070:intron 40.0%
!! CGAAGGGCATCTTAATAGTT+GGG + chr7_2:75631497-75631516 Msa1077070:intron 40.0%
GGCATCTTAATAGTTGGGTT+GGG + chr7_2:75631502-75631521 Msa1077070:intron 40.0%
TGTGTCTACCAAAACTGTCA+AGG - chr7_2:75631628-75631647 None:intergenic 40.0%
!! TGACAGTTTTGGTAGACACA+TGG + chr7_2:75631628-75631647 Msa1077070:intron 40.0%
CCTAAACTTGTACGAGAGAA+TGG - chr7_2:75631784-75631803 None:intergenic 40.0%
CCATTCTCTCGTACAAGTTT+AGG + chr7_2:75631781-75631800 Msa1077070:intron 40.0%
AGCTATGACACATAATGCCA+AGG + chr7_2:75631842-75631861 Msa1077070:CDS 40.0%
AGCTTGACTATGATGGCAAA+CGG + chr7_2:75631946-75631965 Msa1077070:CDS 40.0%
AGATGATTTAAGGGTAGACG+AGG + chr7_2:75632133-75632152 Msa1077070:CDS 40.0%
!! GGTTGATGAAAGCAAACAGA+TGG + chr7_2:75632160-75632179 Msa1077070:CDS 40.0%
! CAAACAGATGGACTTTGCAA+AGG + chr7_2:75632172-75632191 Msa1077070:CDS 40.0%
! TTTTCATTTGGATCTGCCTC+TGG - chr7_2:75632473-75632492 None:intergenic 40.0%
TAGAAGTAGTGGTCAAGCTT+TGG + chr7_2:75632625-75632644 Msa1077070:CDS 40.0%
!! TGGTCAAGCTTTGGAATTCA+AGG + chr7_2:75632634-75632653 Msa1077070:CDS 40.0%
ACAAGATGTTCACATGCAAG+CGG + chr7_2:75632694-75632713 Msa1077070:CDS 40.0%
TAGAGTAATTCAGCTTGGGA+AGG - chr7_2:75632722-75632741 None:intergenic 40.0%
ACTTCCAAGAGAACTTCTTC+TGG + chr7_2:75632832-75632851 Msa1077070:CDS 40.0%
CTTCCAAGAGAACTTCTTCT+GGG + chr7_2:75632833-75632852 Msa1077070:CDS 40.0%
! TCGTGCTGGTAGAATTGTTA+AGG + chr7_2:75632883-75632902 Msa1077070:CDS 40.0%
! CGTGCTGGTAGAATTGTTAA+GGG + chr7_2:75632884-75632903 Msa1077070:CDS 40.0%
TGGTAGAATTGTTAAGGGAC+AGG + chr7_2:75632889-75632908 Msa1077070:CDS 40.0%
TCCTCTTCATACTTGCTTCT+GGG - chr7_2:75633499-75633518 None:intergenic 40.0%
ATCCTCTTCATACTTGCTTC+TGG - chr7_2:75633500-75633519 None:intergenic 40.0%
TCAACAACCACACAACTGTT+TGG + chr7_2:75633527-75633546 Msa1077070:CDS 40.0%
CAACAACCACACAACTGTTT+GGG + chr7_2:75633528-75633547 Msa1077070:CDS 40.0%
AACAACCACACAACTGTTTG+GGG + chr7_2:75633529-75633548 Msa1077070:CDS 40.0%
GAGAGCTAATATTGCACGTA+AGG + chr7_2:75633666-75633685 Msa1077070:CDS 40.0%
GATATTCATGTGCGTTGTAC+TGG + chr7_2:75634296-75634315 Msa1077070:intron 40.0%
!! GCGTTGTACTGGTATTTTAC+AGG + chr7_2:75634307-75634326 Msa1077070:intron 40.0%
AGAGAGAAGAGAAAGATGAG+AGG + chr7_2:75634342-75634361 Msa1077070:CDS 40.0%
TCAGATGGAATGATCAGGTA+TGG + chr7_2:75634381-75634400 Msa1077070:intron 40.0%
ATCCAAACAGGTAACTCAAG+AGG + chr7_2:75634476-75634495 Msa1077070:intron 40.0%
ATCCTCTTGAGTTACCTGTT+TGG - chr7_2:75634481-75634500 None:intergenic 40.0%
ACAGGTAACTCAAGAGGATA+TGG + chr7_2:75634482-75634501 Msa1077070:intron 40.0%
! GAAATGAACACAGGCCTTTT+TGG - chr7_2:75634580-75634599 None:intergenic 40.0%
CATAGTACTAACAAGCCACA+AGG - chr7_2:75634712-75634731 None:intergenic 40.0%
TCGGTATACACATGTAACGT+TGG - chr7_2:75634795-75634814 None:intergenic 40.0%
GTTTGAAAAAAAGAACGGCG+AGG - chr7_2:75635128-75635147 None:intergenic 40.0%
! CACAACGGTATTTGAGACAT+AGG - chr7_2:75635187-75635206 None:intergenic 40.0%
!! TTGTATTCGGTGGATTGCAG+TGG + chr7_2:75629926-75629945 Msa1077070:intron 45.0%
!! TGAGGTTGATGAAGATGGCA+AGG + chr7_2:75630022-75630041 Msa1077070:CDS 45.0%
AGTATATGTCATCTGCGCCT+TGG + chr7_2:75630066-75630085 Msa1077070:CDS 45.0%
CTCTCGGCATTAAGATACCA+AGG - chr7_2:75630086-75630105 None:intergenic 45.0%
TGGTGGAAACTAGGCTTAAG+TGG + chr7_2:75630195-75630214 Msa1077070:intron 45.0%
CTTATCCCACTAAGTCAGGT+GGG - chr7_2:75630378-75630397 None:intergenic 45.0%
AAGGCTTATCCCACTAAGTC+AGG - chr7_2:75630382-75630401 None:intergenic 45.0%
TGACTTAGTGGGATAAGCCT+TGG + chr7_2:75630381-75630400 Msa1077070:intron 45.0%
! CAAGCCTTTTCCCACTAAGT+GGG + chr7_2:75630499-75630518 Msa1077070:intron 45.0%
! AAGCCTTTTCCCACTAAGTG+GGG + chr7_2:75630500-75630519 Msa1077070:intron 45.0%
GCTATAGCACTGTTGTGTAG+CGG + chr7_2:75630728-75630747 Msa1077070:intron 45.0%
ATCCCAACTACACCACATCA+TGG + chr7_2:75630929-75630948 Msa1077070:CDS 45.0%
GTACCATGATGTGGTGTAGT+TGG - chr7_2:75630935-75630954 None:intergenic 45.0%
ACCACATCATGGTACGATAG+AGG + chr7_2:75630940-75630959 Msa1077070:CDS 45.0%
ACCTCTATCGTACCATGATG+TGG - chr7_2:75630944-75630963 None:intergenic 45.0%
!! CTTTTCAGGCCCAGAAGTAT+AGG + chr7_2:75630971-75630990 Msa1077070:CDS 45.0%
TGTTGTGCCTCCAAATGTGA+TGG + chr7_2:75631055-75631074 Msa1077070:intron 45.0%
! GTCTTGTTAGTTTACACGCC+TGG + chr7_2:75631274-75631293 Msa1077070:intron 45.0%
!! GCGAAGGGCATCTTAATAGT+TGG + chr7_2:75631496-75631515 Msa1077070:intron 45.0%
GGGCATCTTAATAGTTGGGT+TGG + chr7_2:75631501-75631520 Msa1077070:intron 45.0%
ACATAATGCCAAGGCATGCA+TGG + chr7_2:75631851-75631870 Msa1077070:CDS 45.0%
ATGGAAAGACCACGGAAAGT+AGG + chr7_2:75631870-75631889 Msa1077070:CDS 45.0%
GCACATTGCTGCTGATGAAA+AGG + chr7_2:75631911-75631930 Msa1077070:CDS 45.0%
GCTTGACTATGATGGCAAAC+GGG + chr7_2:75631947-75631966 Msa1077070:CDS 45.0%
CGCTCGAAAGAAGTTCTTGA+AGG + chr7_2:75632037-75632056 Msa1077070:CDS 45.0%
GGAACAACAGCTGAAGAGAT+TGG + chr7_2:75632058-75632077 Msa1077070:CDS 45.0%
ACAGCTGAAGAGATTGGAGA+AGG + chr7_2:75632064-75632083 Msa1077070:CDS 45.0%
CAGCTGAAGAGATTGGAGAA+GGG + chr7_2:75632065-75632084 Msa1077070:CDS 45.0%
AAGGGCGACCAAAATGATGA+GGG + chr7_2:75632083-75632102 Msa1077070:CDS 45.0%
! TTGCAGCACCCTCATCATTT+TGG - chr7_2:75632094-75632113 None:intergenic 45.0%
TTTAAGGGTAGACGAGGCAA+AGG + chr7_2:75632139-75632158 Msa1077070:CDS 45.0%
! TAATGCAGGGCGAAGTTGAT+TGG + chr7_2:75632271-75632290 Msa1077070:intron 45.0%
TCGAATACGTAGGTTCCTGA+AGG - chr7_2:75632363-75632382 None:intergenic 45.0%
CAGTATCCTCTCGAATACGT+AGG - chr7_2:75632373-75632392 None:intergenic 45.0%
AGGACTTAAACATCCATGCC+TGG + chr7_2:75632654-75632673 Msa1077070:CDS 45.0%
GGACTTAAACATCCATGCCT+GGG + chr7_2:75632655-75632674 Msa1077070:CDS 45.0%
TGACCCAGAAGAAGTTCTCT+TGG - chr7_2:75632839-75632858 None:intergenic 45.0%
! CAAGTTGAGTATGATCGTGC+TGG + chr7_2:75632869-75632888 Msa1077070:CDS 45.0%
TACGAGTACAGTACCAGGTA+CGG - chr7_2:75633301-75633320 None:intergenic 45.0%
ATAGGTACGAGTACAGTACC+AGG - chr7_2:75633306-75633325 None:intergenic 45.0%
CCTCTTCATACTTGCTTCTG+GGG - chr7_2:75633498-75633517 None:intergenic 45.0%
ATGATCCCCAAACAGTTGTG+TGG - chr7_2:75633537-75633556 None:intergenic 45.0%
ACACAACTGTTTGGGGATCA+TGG + chr7_2:75633536-75633555 Msa1077070:CDS 45.0%
! TGCAGCATTTAAAACCCCAC+TGG - chr7_2:75633573-75633592 None:intergenic 45.0%
AGAAGAGAAGGAGGAGATAG+AGG - chr7_2:75633735-75633754 None:intergenic 45.0%
! GCAGGCCTTTTCTCTTCTAT+TGG - chr7_2:75633877-75633896 None:intergenic 45.0%
AAGAGAAAAGGCCTGCTACA+TGG + chr7_2:75633881-75633900 Msa1077070:CDS 45.0%
AGAGAAAAGGCCTGCTACAT+GGG + chr7_2:75633882-75633901 Msa1077070:CDS 45.0%
TGTTCCAGAAGACGTAGTTC+TGG + chr7_2:75633912-75633931 Msa1077070:CDS 45.0%
TCATCCAGAACTACGTCTTC+TGG - chr7_2:75633919-75633938 None:intergenic 45.0%
GTAGAAACGTGATGGCACTA+TGG + chr7_2:75634209-75634228 Msa1077070:intron 45.0%
GGTAACTCAAGAGGATATGG+AGG + chr7_2:75634485-75634504 Msa1077070:intron 45.0%
! AAGAGGATATGGAGGCATAC+AGG + chr7_2:75634493-75634512 Msa1077070:CDS 45.0%
TTCCTGAACTAAGCTTGGAG+AGG + chr7_2:75634554-75634573 Msa1077070:exon 45.0%
TAAGCTTGGAGAGGCCAAAA+AGG + chr7_2:75634563-75634582 Msa1077070:three_prime_UTR 45.0%
GAGAACATCACAAAGGCTTG+TGG - chr7_2:75634612-75634631 None:intergenic 45.0%
GCAGCTTGAGAACATCACAA+AGG - chr7_2:75634619-75634638 None:intergenic 45.0%
GTGTATGATCAGCGAGAAAG+CGG + chr7_2:75634656-75634675 Msa1077070:three_prime_UTR 45.0%
GAGAAACCTTAGGGTCACTA+AGG + chr7_2:75634833-75634852 Msa1077070:three_prime_UTR 45.0%
CATTTGCCTTAGTGACCCTA+AGG - chr7_2:75634842-75634861 None:intergenic 45.0%
ACGGCGAGGTTTAAATGAAC+TGG - chr7_2:75635114-75635133 None:intergenic 45.0%
!!! TTAATTTTATTTTTTTTGAA+GGG - chr7_2:75629446-75629465 None:intergenic 5.0%
!!! TTTAATTTTATTTTTTTTGA+AGG - chr7_2:75629447-75629466 None:intergenic 5.0%
!! CAAAAAAAATAAAATTAAAA+AGG + chr7_2:75629448-75629467 Msa1077070:five_prime_UTR 5.0%
!!! TTTATATATTTATTCAATTT+TGG + chr7_2:75629748-75629767 Msa1077070:intron 5.0%
!!! AGAAATTAATAATTATTTTT+TGG - chr7_2:75634943-75634962 None:intergenic 5.0%
TTGCAGTGGCATTCAAGTCC+AGG + chr7_2:75629940-75629959 Msa1077070:intron 50.0%
TGCAGTGGCATTCAAGTCCA+GGG + chr7_2:75629941-75629960 Msa1077070:intron 50.0%
! CTGTTTTCGATGATCCTCCC+TGG - chr7_2:75629961-75629980 None:intergenic 50.0%
CTTGAGGAAGCTCGTAAAGC+CGG + chr7_2:75629987-75630006 Msa1077070:CDS 50.0%
CCATCTTCATCAACCTCAGC+AGG - chr7_2:75630020-75630039 None:intergenic 50.0%
!! CCTGCTGAGGTTGATGAAGA+TGG + chr7_2:75630017-75630036 Msa1077070:CDS 50.0%
GGCGCAGATGACATATACTG+AGG - chr7_2:75630065-75630084 None:intergenic 50.0%
!! ACTAAGTCAGGTGGGCTACA+TGG - chr7_2:75630370-75630389 None:intergenic 50.0%
ATGTAGCCCACCTGACTTAG+TGG + chr7_2:75630369-75630388 Msa1077070:intron 50.0%
TGTAGCCCACCTGACTTAGT+GGG + chr7_2:75630370-75630389 Msa1077070:intron 50.0%
GCTTATCCCACTAAGTCAGG+TGG - chr7_2:75630379-75630398 None:intergenic 50.0%
CCACTTAGTGGGAAAAGGCT+TGG - chr7_2:75630501-75630520 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG + chr7_2:75630498-75630517 Msa1077070:intron 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG + chr7_2:75630504-75630523 Msa1077070:intron 50.0%
! CAGGCCCAGAAGTATAGGAA+AGG + chr7_2:75630976-75630995 Msa1077070:CDS 50.0%
TGGTCTTTCCATGCATGCCT+TGG - chr7_2:75631862-75631881 None:intergenic 50.0%
AGGCATGCATGGAAAGACCA+CGG + chr7_2:75631862-75631881 Msa1077070:CDS 50.0%
TGCTTTGCTCCTACTTTCCG+TGG - chr7_2:75631882-75631901 None:intergenic 50.0%
ATGATGGCAAACGGGACAGA+TGG + chr7_2:75631955-75631974 Msa1077070:CDS 50.0%
! ACTTCTTTCGAGCGTCGTCT+CGG - chr7_2:75632031-75632050 None:intergenic 50.0%
GAAGGGCGACCAAAATGATG+AGG + chr7_2:75632082-75632101 Msa1077070:CDS 50.0%
!! TGAGGGTGCTGCAATTGATG+AGG + chr7_2:75632100-75632119 Msa1077070:CDS 50.0%
CAGGAACCTACGTATTCGAG+AGG + chr7_2:75632364-75632383 Msa1077070:intron 50.0%
CACATTATGACCCCAAGACC+AGG + chr7_2:75632426-75632445 Msa1077070:CDS 50.0%
TGGAAGAGGATCTTCACGCA+TGG - chr7_2:75632453-75632472 None:intergenic 50.0%
! TTTGGATCTGCCTCTGGAAG+AGG - chr7_2:75632467-75632486 None:intergenic 50.0%
TGTCAAATGCTTCCCAGGCA+TGG - chr7_2:75632670-75632689 None:intergenic 50.0%
!! TGCCTGGGAAGCATTTGACA+AGG + chr7_2:75632670-75632689 Msa1077070:CDS 50.0%
!! GCCTGGGAAGCATTTGACAA+GGG + chr7_2:75632671-75632690 Msa1077070:CDS 50.0%
TCCCTTGTCAAATGCTTCCC+AGG - chr7_2:75632675-75632694 None:intergenic 50.0%
TTCTTCTGGGTCAGAGTGAG+AGG + chr7_2:75632846-75632865 Msa1077070:CDS 50.0%
TACAGTACCAGGTACGGGTA+CGG - chr7_2:75633295-75633314 None:intergenic 50.0%
ACGAGTACAGTACCAGGTAC+GGG - chr7_2:75633300-75633319 None:intergenic 50.0%
CCCCAGAAGCAAGTATGAAG+AGG + chr7_2:75633495-75633514 Msa1077070:CDS 50.0%
CAACTGTTTGGGGATCATGG+TGG + chr7_2:75633539-75633558 Msa1077070:CDS 50.0%
! TGTTTGGGGATCATGGTGGA+AGG + chr7_2:75633543-75633562 Msa1077070:CDS 50.0%
! ATGGTGGAAGGATCACCAGT+GGG + chr7_2:75633555-75633574 Msa1077070:CDS 50.0%
! ATAGAGGCGCAGCAGGAATA+TGG - chr7_2:75633719-75633738 None:intergenic 50.0%
GAGAAAAGGCCTGCTACATG+GGG + chr7_2:75633883-75633902 Msa1077070:CDS 50.0%
ACATCAGTTCCCCATGTAGC+AGG - chr7_2:75633895-75633914 None:intergenic 50.0%
GCTTGCCGATGCACTCAAAA+AGG + chr7_2:75633945-75633964 Msa1077070:CDS 50.0%
GATGTTCTCAAGCTGCCAAG+AGG + chr7_2:75634623-75634642 Msa1077070:three_prime_UTR 50.0%
TCTCAAGCTGCCAAGAGGAA+TGG + chr7_2:75634628-75634647 Msa1077070:three_prime_UTR 50.0%
CTCAAGCTGCCAAGAGGAAT+GGG + chr7_2:75634629-75634648 Msa1077070:three_prime_UTR 50.0%
TACACTCTGCCCATTCCTCT+TGG - chr7_2:75634641-75634660 None:intergenic 50.0%
AGTGGCATTCAAGTCCAGGG+AGG + chr7_2:75629944-75629963 Msa1077070:intron 55.0%
AACCTCAGCAGGTGCAAGTC+CGG - chr7_2:75630009-75630028 None:intergenic 55.0%
CGACCCCACTTAGTGGGAAA+AGG - chr7_2:75630506-75630525 None:intergenic 55.0%
!! AAGCACCGACCCCACTTAGT+GGG - chr7_2:75630512-75630531 None:intergenic 55.0%
!! AAAGCACCGACCCCACTTAG+TGG - chr7_2:75630513-75630532 None:intergenic 55.0%
GGCAAACGGGACAGATGGAA+TGG + chr7_2:75631960-75631979 Msa1077070:CDS 55.0%
! CTTCTTTCGAGCGTCGTCTC+GGG - chr7_2:75632030-75632049 None:intergenic 55.0%
! GAGAAGCGTGTGCGAACAAC+AGG + chr7_2:75632197-75632216 Msa1077070:CDS 55.0%
AAGCGTGTGCGAACAACAGG+CGG + chr7_2:75632200-75632219 Msa1077070:CDS 55.0%
! GTGGGAGTACAGGAACTGTG+AGG + chr7_2:75632222-75632241 Msa1077070:CDS 55.0%
! TCACGCATGGACCTGGTCTT+GGG - chr7_2:75632440-75632459 None:intergenic 55.0%
TTCACGCATGGACCTGGTCT+TGG - chr7_2:75632441-75632460 None:intergenic 55.0%
AGGATCTTCACGCATGGACC+TGG - chr7_2:75632447-75632466 None:intergenic 55.0%
GCGTGAAGATCCTCTTCCAG+AGG + chr7_2:75632454-75632473 Msa1077070:CDS 55.0%
GTATGGCAATGCAGCTGACG+AGG + chr7_2:75632805-75632824 Msa1077070:CDS 55.0%
ATGTATCCCGTACCCGTACC+TGG + chr7_2:75633285-75633304 Msa1077070:intron 55.0%
ACAGTACCAGGTACGGGTAC+GGG - chr7_2:75633294-75633313 None:intergenic 55.0%
! CATGGTGGAAGGATCACCAG+TGG + chr7_2:75633554-75633573 Msa1077070:CDS 55.0%
TGGTGGAAGGATCACCAGTG+GGG + chr7_2:75633556-75633575 Msa1077070:CDS 55.0%
!! AGCTATTGCACTGGTGCTGC+TGG + chr7_2:75633610-75633629 Msa1077070:CDS 55.0%
!! CACTGGTGCTGCTGGTATTG+AGG + chr7_2:75633618-75633637 Msa1077070:CDS 55.0%
! TGCTGGTATTGAGGCTGCTG+AGG + chr7_2:75633627-75633646 Msa1077070:CDS 55.0%
GGCCTCTCCAAGCTTAGTTC+AGG - chr7_2:75634559-75634578 None:intergenic 55.0%
AGCGAGAAAGCGGAACAGAG+TGG + chr7_2:75634666-75634685 Msa1077070:three_prime_UTR 55.0%
GTGTGCGAACAACAGGCGGT+GGG + chr7_2:75632204-75632223 Msa1077070:CDS 60.0%
! ACAACAGGCGGTGGGAGTAC+AGG + chr7_2:75632212-75632231 Msa1077070:CDS 60.0%
!! CACGCATGGACCTGGTCTTG+GGG - chr7_2:75632439-75632458 None:intergenic 60.0%
ATTGAGGCTGCTGAGGCTGC+AGG + chr7_2:75633634-75633653 Msa1077070:CDS 60.0%
GCACGTAAGGAGTCTGCTGC+AGG + chr7_2:75633679-75633698 Msa1077070:CDS 60.0%
AGCCGGACTTGCACCTGCTG+AGG + chr7_2:75630004-75630023 Msa1077070:CDS 65.0%
CGTGTGCGAACAACAGGCGG+TGG + chr7_2:75632203-75632222 Msa1077070:CDS 65.0%
! GGAGGAGATAGAGGCGCAGC+AGG - chr7_2:75633726-75633745 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75629419 75635251 75629419 ID=Msa1077070;Name=Msa1077070
chr7_2 mRNA 75629419 75635251 75629419 ID=Msa1077070-mRNA-1;Parent=Msa1077070;Name=Msa1077070-mRNA-1;_AED=0.06;_eAED=0.06;_QI=152|0.88|0.8|1|1|1|10|691|525
chr7_2 exon 75629419 75629586 75629419 ID=Msa1077070-mRNA-1:exon:18056;Parent=Msa1077070-mRNA-1
chr7_2 exon 75629946 75630087 75629946 ID=Msa1077070-mRNA-1:exon:18057;Parent=Msa1077070-mRNA-1
chr7_2 exon 75630900 75631010 75630900 ID=Msa1077070-mRNA-1:exon:18058;Parent=Msa1077070-mRNA-1
chr7_2 exon 75631836 75632243 75631836 ID=Msa1077070-mRNA-1:exon:18059;Parent=Msa1077070-mRNA-1
chr7_2 exon 75632367 75632502 75632367 ID=Msa1077070-mRNA-1:exon:18060;Parent=Msa1077070-mRNA-1
chr7_2 exon 75632611 75632910 75632611 ID=Msa1077070-mRNA-1:exon:18061;Parent=Msa1077070-mRNA-1
chr7_2 exon 75633484 75633700 75633484 ID=Msa1077070-mRNA-1:exon:18062;Parent=Msa1077070-mRNA-1
chr7_2 exon 75633863 75633966 75633863 ID=Msa1077070-mRNA-1:exon:18063;Parent=Msa1077070-mRNA-1
chr7_2 exon 75634329 75634397 75634329 ID=Msa1077070-mRNA-1:exon:18064;Parent=Msa1077070-mRNA-1
chr7_2 exon 75634486 75635251 75634486 ID=Msa1077070-mRNA-1:exon:18065;Parent=Msa1077070-mRNA-1
chr7_2 five_prime_UTR 75629419 75629570 75629419 ID=Msa1077070-mRNA-1:five_prime_utr;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75629571 75629586 75629571 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75629946 75630087 75629946 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75630900 75631010 75630900 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75631836 75632243 75631836 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75632367 75632502 75632367 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75632611 75632910 75632611 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75633484 75633700 75633484 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75633863 75633966 75633863 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75634329 75634397 75634329 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 CDS 75634486 75634560 75634486 ID=Msa1077070-mRNA-1:cds;Parent=Msa1077070-mRNA-1
chr7_2 three_prime_UTR 75634561 75635251 75634561 ID=Msa1077070-mRNA-1:three_prime_utr;Parent=Msa1077070-mRNA-1
Gene Sequence

>Msa1077070

ATGGCAACAGCTTCAGTGGCATTCAAGTCCAGGGAGGATCATCGAAAACAGATTGAGCTTGAGGAAGCTCGTAAAGCCGGACTTGCACCTGCTGAGGTTGATGAAGATGGCAAGGAAATCAATCCCCATATTCCTCAGTATATGTCATCTGCGCCTTGTTTGAAACATCAAAGGAAATGGAAATCTGATCCCAACTACACCACATCATGGTACGATAGAGGTGCTAAAACTTTTCAGGCCCAGAAGTATAGGAAAGGTGCATGTGAGAACTGCGGAGCTATGACACATAATGCCAAGGCATGCATGGAAAGACCACGGAAAGTAGGAGCAAAGCATACAGACAAGCACATTGCTGCTGATGAAAAGGTAGAAACTTTTGAGCTTGACTATGATGGCAAACGGGACAGATGGAATGGTTATGATGCTTCAACATATGCTCGAGTCATTGAGAGATATGAAGCCCGAGACGACGCTCGAAAGAAGTTCTTGAAGGAACAACAGCTGAAGAGATTGGAGAAGGGCGACCAAAATGATGAGGGTGCTGCAATTGATGAGGCTGAAGATGAAGATGATTTAAGGGTAGACGAGGCAAAGGTTGATGAAAGCAAACAGATGGACTTTGCAAAGGTTGAGAAGCGTGTGCGAACAACAGGCGGTGGGAGTACAGGAACTGTGAGGAACCTACGTATTCGAGAGGATACTGCAAAATATCTTCTAAATCTTGATGTCAATTCTGCACATTATGACCCCAAGACCAGGTCCATGCGTGAAGATCCTCTTCCAGAGGCAGATCCAAATGAAAAGTTTTACTTGGGTGATAACCAATATAGAAGTAGTGGTCAAGCTTTGGAATTCAAGGACTTAAACATCCATGCCTGGGAAGCATTTGACAAGGGACAAGATGTTCACATGCAAGCGGCTCCTTCCCAAGCTGAATTACTCTATAAGAATTTCAAGGTCATGAAGGAGAAATTGAAGTCTCAAACAAAGGACACTATTATTGAGAAGTATGGCAATGCAGCTGACGAGGACAAACTTCCAAGAGAACTTCTTCTGGGTCAGAGTGAGAGGCAAGTTGAGTATGATCGTGCTGGTAGAATTGTTAAGGGACAGGAAGTCGCAATCCCCAGAAGCAAGTATGAAGAGGATGTTTACATCAACAACCACACAACTGTTTGGGGATCATGGTGGAAGGATCACCAGTGGGGTTTTAAATGCTGCAAGCAGACAATACGTAATAGCTATTGCACTGGTGCTGCTGGTATTGAGGCTGCTGAGGCTGCAGGTGATCTTATGAGAGCTAATATTGCACGTAAGGAGTCTGCTGCAGAGGATCCTAAACCAATAGAAGAGAAAAGGCCTGCTACATGGGGAACTGATGTTCCAGAAGACGTAGTTCTGGATGAAAAATTGCTTGCCGATGCACTCAAAAAGGAGGATCAAAGAAAGAGAGAAGAGAAAGATGAGAGGAAGCGTAAATATAATGTCAGATGGAATGATCAGGTAACTCAAGAGGATATGGAGGCATACAGGATGAAGAAAGTACATCACGATGACCCAATGAAGAATTTTTCCTGA
Protein sequence

>Msa1077070

MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPCLKHQRKWKSDPNYTTSWYDRGAKTFQAQKYRKGACENCGAMTHNAKACMERPRKVGAKHTDKHIAADEKVETFELDYDGKRDRWNGYDASTYARVIERYEARDDARKKFLKEQQLKRLEKGDQNDEGAAIDEAEDEDDLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPEADPNEKFYLGDNQYRSSGQALEFKDLNIHAWEAFDKGQDVHMQAAPSQAELLYKNFKVMKEKLKSQTKDTIIEKYGNAADEDKLPRELLLGQSERQVEYDRAGRIVKGQEVAIPRSKYEEDVYINNHTTVWGSWWKDHQWGFKCCKQTIRNSYCTGAAGIEAAEAAGDLMRANIARKESAAEDPKPIEEKRPATWGTDVPEDVVLDEKLLADALKKEDQRKREEKDERKRKYNVRWNDQVTQEDMEAYRMKKVHHDDPMKNFS*