Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830210 | XP_003610633.1 | 96.413 | 446 | 13 | 2 | 1 | 445 | 1 | 444 | 0.0 | 871 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830210 | sp|Q9LJN2|MRS23_ARATH | 64.000 | 450 | 110 | 7 | 36 | 445 | 47 | 484 | 0.0 | 527 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830210 | G7K0Y3 | 96.413 | 446 | 13 | 2 | 1 | 445 | 1 | 444 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0064110 | Msa0830210 | 0.806556 | 7.766754e-50 | -8.615850e-47 |
| Msa0074750 | Msa0830210 | 0.825661 | 4.150677e-54 | -8.615850e-47 |
| Msa0092440 | Msa0830210 | 0.804930 | 1.705028e-49 | -8.615850e-47 |
| Msa0617260 | Msa0830210 | 0.820732 | 5.871148e-53 | -8.615850e-47 |
| Msa0621240 | Msa0830210 | 0.805620 | 1.222279e-49 | -8.615850e-47 |
| Msa0640940 | Msa0830210 | 0.809317 | 2.008761e-50 | -8.615850e-47 |
| Msa0687230 | Msa0830210 | 0.818784 | 1.635800e-52 | -8.615850e-47 |
| Msa0703730 | Msa0830210 | 0.803554 | 3.298699e-49 | -8.615850e-47 |
| Msa0711130 | Msa0830210 | 0.896430 | 3.717980e-76 | -8.615850e-47 |
| Msa0716860 | Msa0830210 | 0.804452 | 2.146029e-49 | -8.615850e-47 |
| Msa0743530 | Msa0830210 | 0.809605 | 1.741882e-50 | -8.615850e-47 |
| Msa0776750 | Msa0830210 | 0.802098 | 6.591898e-49 | -8.615850e-47 |
| Msa0787150 | Msa0830210 | 0.807848 | 4.135366e-50 | -8.615850e-47 |
| Msa0789560 | Msa0830210 | 0.804967 | 1.675269e-49 | -8.615850e-47 |
| Msa0805420 | Msa0830210 | 0.812719 | 3.679682e-51 | -8.615850e-47 |
| Msa0820530 | Msa0830210 | -0.803211 | 3.884316e-49 | -8.615850e-47 |
| Msa0830210 | Msa0857300 | 0.826100 | 3.264018e-54 | -8.615850e-47 |
| Msa0830210 | Msa0898660 | 0.808736 | 2.674477e-50 | -8.615850e-47 |
| Msa0830210 | Msa0903780 | 0.802958 | 4.382771e-49 | -8.615850e-47 |
| Msa0830210 | Msa0930820 | 0.823587 | 1.278564e-53 | -8.615850e-47 |
| Msa0830210 | Msa1010460 | 0.800202 | 1.609590e-48 | -8.615850e-47 |
| Msa0830210 | Msa1036740 | 0.821422 | 4.072897e-53 | -8.615850e-47 |
| Msa0830210 | Msa1077070 | 0.813550 | 2.418477e-51 | -8.615850e-47 |
| Msa0830210 | Msa1096550 | 0.802176 | 6.352554e-49 | -8.615850e-47 |
| Msa0830210 | Msa1122780 | 0.828167 | 1.044859e-54 | -8.615850e-47 |
| Msa0830210 | Msa1127430 | 0.848812 | 4.827183e-60 | -8.615850e-47 |
| Msa0830210 | Msa1130400 | 0.801267 | 9.762254e-49 | -8.615850e-47 |
| Msa0830210 | Msa1131530 | 0.804054 | 2.597187e-49 | -8.615850e-47 |
| Msa0830210 | Msa1163870 | 0.802945 | 4.408326e-49 | -8.615850e-47 |
| Msa0830210 | Msa1168590 | 0.802343 | 5.867706e-49 | -8.615850e-47 |
| Msa0830210 | Msa1174310 | 0.820054 | 8.400350e-53 | -8.615850e-47 |
| Msa0830210 | Msa1176980 | 0.800078 | 1.706367e-48 | -8.615850e-47 |
| Msa0830210 | Msa1185130 | 0.806754 | 7.054442e-50 | -8.615850e-47 |
| Msa0830210 | Msa1188560 | 0.845851 | 3.137278e-59 | -8.615850e-47 |
| Msa0830210 | Msa1205480 | 0.857173 | 1.955347e-62 | -8.615850e-47 |
| Msa0830210 | Msa1205590 | 0.801736 | 7.821120e-49 | -8.615850e-47 |
| Msa0830210 | Msa1206100 | 0.804235 | 2.381027e-49 | -8.615850e-47 |
| Msa0830210 | Msa1211340 | 0.809493 | 1.841163e-50 | -8.615850e-47 |
| Msa0830210 | Msa1211350 | 0.805559 | 1.259274e-49 | -8.615850e-47 |
| Msa0830210 | Msa1223870 | 0.828289 | 9.763587e-55 | -8.615850e-47 |
| Msa0830210 | Msa1263060 | 0.806700 | 7.243173e-50 | -8.615850e-47 |
| Msa0830210 | Msa1296300 | 0.809979 | 1.447868e-50 | -8.615850e-47 |
| Msa0830210 | Msa1302550 | 0.811634 | 6.345748e-51 | -8.615850e-47 |
| Msa0830210 | Msa1329550 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0830210 | Msa1329790 | 0.811448 | 6.966132e-51 | -8.615850e-47 |
| Msa0830210 | Msa1329800 | 0.823967 | 1.041384e-53 | -8.615850e-47 |
| Msa0830210 | Msa1336040 | 0.849335 | 3.454607e-60 | -8.615850e-47 |
| Msa0830210 | Msa1372290 | 0.806472 | 8.091739e-50 | -8.615850e-47 |
| Msa0830210 | Msa1385350 | 0.807842 | 4.148173e-50 | -8.615850e-47 |
| Msa0830210 | Msa1393800 | 0.807228 | 5.601508e-50 | -8.615850e-47 |
| Msa0830210 | Msa1396940 | 0.824098 | 9.701447e-54 | -8.615850e-47 |
| Msa0830210 | Msa1416260 | 0.800972 | 1.121554e-48 | -8.615850e-47 |
| Msa0830210 | Msa1426910 | 0.839206 | 1.819742e-57 | -8.615850e-47 |
| Msa0830210 | Msa1433220 | 0.800654 | 1.302006e-48 | -8.615850e-47 |
| Msa0830210 | Msa1445940 | 0.801929 | 7.139190e-49 | -8.615850e-47 |
| Msa0830210 | Msa1446080 | 0.810409 | 1.169442e-50 | -8.615850e-47 |
| Msa0830210 | Msa1456230 | 0.803957 | 2.719817e-49 | -8.615850e-47 |
| Msa0138210 | Msa0830210 | 0.812259 | 4.638675e-51 | -8.615850e-47 |
| Msa0144620 | Msa0830210 | 0.812201 | 4.775523e-51 | -8.615850e-47 |
| Msa0194720 | Msa0830210 | 0.816953 | 4.238902e-52 | -8.615850e-47 |
| Msa0375980 | Msa0830210 | 0.819934 | 8.946899e-53 | -8.615850e-47 |
| Msa0382370 | Msa0830210 | 0.803324 | 3.679991e-49 | -8.615850e-47 |
| Msa0388650 | Msa0830210 | 0.814337 | 1.621559e-51 | -8.615850e-47 |
| Msa0432070 | Msa0830210 | 0.813010 | 3.178285e-51 | -8.615850e-47 |
| Msa0436190 | Msa0830210 | 0.806660 | 7.386517e-50 | -8.615850e-47 |
| Msa0442310 | Msa0830210 | 0.800801 | 1.215632e-48 | -8.615850e-47 |
| Msa0449820 | Msa0830210 | 0.806989 | 6.290689e-50 | -8.615850e-47 |
| Msa0269520 | Msa0830210 | 0.803494 | 3.393253e-49 | -8.615850e-47 |
| Msa0271790 | Msa0830210 | 0.807153 | 5.808229e-50 | -8.615850e-47 |
| Msa0281360 | Msa0830210 | 0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa0310430 | Msa0830210 | 0.811925 | 5.484865e-51 | -8.615850e-47 |
| Msa0518960 | Msa0830210 | 0.828885 | 7.008614e-55 | -8.615850e-47 |
| Msa0534410 | Msa0830210 | 0.814198 | 1.741159e-51 | -8.615850e-47 |
| Msa0555640 | Msa0830210 | 0.823597 | 1.271464e-53 | -8.615850e-47 |
| Msa0572000 | Msa0830210 | 0.821943 | 3.085198e-53 | -8.615850e-47 |
| Msa0582280 | Msa0830210 | 0.814419 | 1.555581e-51 | -8.615850e-47 |
| Msa0585650 | Msa0830210 | -0.805273 | 1.445609e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830210 | MtrunA17_Chr5g0393831 | 96.413 | 446 | 13 | 2 | 1 | 445 | 1 | 444 | 0.0 | 871 |
| Msa0830210 | MtrunA17_Chr1g0206981 | 55.196 | 433 | 161 | 8 | 26 | 445 | 12 | 424 | 2.74e-148 | 428 |
| Msa0830210 | MtrunA17_Chr8g0384941 | 44.783 | 460 | 169 | 7 | 17 | 443 | 15 | 422 | 5.38e-120 | 356 |
| Msa0830210 | MtrunA17_Chr2g0333971 | 46.137 | 453 | 198 | 9 | 8 | 444 | 24 | 446 | 7.05e-116 | 347 |
| Msa0830210 | MtrunA17_Chr5g0419611 | 40.000 | 435 | 207 | 9 | 14 | 444 | 19 | 403 | 2.39e-95 | 293 |
| Msa0830210 | MtrunA17_Chr8g0380621 | 40.230 | 435 | 187 | 10 | 23 | 444 | 46 | 420 | 3.17e-94 | 290 |
| Msa0830210 | MtrunA17_Chr8g0385861 | 54.419 | 215 | 70 | 5 | 27 | 213 | 24 | 238 | 1.16e-67 | 216 |
| Msa0830210 | MtrunA17_Chr1g0165841 | 48.259 | 201 | 98 | 2 | 36 | 235 | 20 | 215 | 5.66e-55 | 187 |
| Msa0830210 | MtrunA17_Chr1g0165841 | 43.357 | 143 | 77 | 2 | 302 | 444 | 227 | 365 | 3.44e-21 | 94.7 |
| Msa0830210 | MtrunA17_Chr1g0165861 | 38.023 | 263 | 104 | 4 | 176 | 436 | 2 | 207 | 1.40e-48 | 165 |
| Msa0830210 | MtrunA17_Chr1g0176551 | 44.231 | 208 | 47 | 6 | 36 | 243 | 10 | 148 | 6.27e-38 | 139 |
| Msa0830210 | MtrunA17_Chr1g0176551 | 35.398 | 113 | 64 | 2 | 333 | 445 | 165 | 268 | 8.53e-11 | 62.4 |
| Msa0830210 | MtrunA17_Chr8g0385851 | 54.867 | 113 | 48 | 1 | 332 | 444 | 1 | 110 | 3.74e-36 | 129 |
| Msa0830210 | MtrunA17_Chr1g0187901 | 48.980 | 147 | 68 | 3 | 301 | 444 | 246 | 388 | 1.53e-34 | 132 |
| Msa0830210 | MtrunA17_Chr2g0330321 | 56.835 | 139 | 28 | 6 | 56 | 190 | 1 | 111 | 1.80e-33 | 122 |
| Msa0830210 | MtrunA17_Chr7g0260731 | 57.000 | 100 | 38 | 1 | 302 | 401 | 155 | 249 | 1.56e-29 | 116 |
| Msa0830210 | MtrunA17_Chr1g0165871 | 48.113 | 106 | 48 | 2 | 26 | 124 | 5 | 110 | 3.89e-24 | 98.2 |
| Msa0830210 | MtrunA17_Chr2g0307921 | 55.000 | 80 | 36 | 0 | 26 | 105 | 8 | 87 | 5.63e-23 | 93.2 |
| Msa0830210 | MtrunA17_Chr2g0307931 | 62.121 | 66 | 25 | 0 | 40 | 105 | 20 | 85 | 3.32e-20 | 85.1 |
| Msa0830210 | MtrunA17_Chr1g0187911 | 59.211 | 76 | 21 | 1 | 326 | 401 | 72 | 137 | 4.23e-20 | 86.7 |
| Msa0830210 | MtrunA17_Chr7g0260721 | 55.714 | 70 | 30 | 1 | 23 | 91 | 12 | 81 | 4.80e-19 | 81.6 |
| Msa0830210 | MtrunA17_Chr2g0320641 | 23.301 | 412 | 219 | 13 | 40 | 444 | 123 | 444 | 3.20e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830210 | AT3G19640.1 | 64.000 | 450 | 110 | 7 | 36 | 445 | 47 | 484 | 0.0 | 527 |
| Msa0830210 | AT1G80900.2 | 45.077 | 457 | 203 | 8 | 1 | 444 | 19 | 440 | 2.03e-114 | 343 |
| Msa0830210 | AT1G80900.1 | 45.077 | 457 | 203 | 8 | 1 | 444 | 19 | 440 | 2.03e-114 | 343 |
| Msa0830210 | AT1G16010.3 | 46.591 | 440 | 178 | 10 | 23 | 444 | 40 | 440 | 5.27e-114 | 342 |
| Msa0830210 | AT1G16010.1 | 46.591 | 440 | 178 | 10 | 23 | 444 | 40 | 440 | 5.27e-114 | 342 |
| Msa0830210 | AT1G16010.2 | 46.591 | 440 | 178 | 10 | 23 | 444 | 40 | 440 | 5.27e-114 | 342 |
| Msa0830210 | AT5G09690.1 | 43.721 | 430 | 181 | 6 | 19 | 444 | 12 | 384 | 1.02e-103 | 314 |
| Msa0830210 | AT5G09690.2 | 43.721 | 430 | 181 | 6 | 19 | 444 | 23 | 395 | 1.51e-103 | 313 |
| Msa0830210 | AT5G09690.12 | 46.253 | 387 | 150 | 5 | 19 | 401 | 23 | 355 | 4.80e-100 | 304 |
| Msa0830210 | AT3G58970.1 | 41.055 | 436 | 202 | 7 | 17 | 444 | 46 | 434 | 1.50e-99 | 305 |
| Msa0830210 | AT2G03620.1 | 40.952 | 420 | 208 | 8 | 25 | 444 | 40 | 419 | 1.18e-93 | 289 |
| Msa0830210 | AT2G03620.2 | 40.952 | 420 | 208 | 8 | 25 | 444 | 40 | 419 | 1.18e-93 | 289 |
| Msa0830210 | AT5G09690.7 | 45.355 | 366 | 136 | 5 | 19 | 377 | 12 | 320 | 1.73e-89 | 275 |
| Msa0830210 | AT5G09690.9 | 45.961 | 359 | 140 | 4 | 19 | 375 | 12 | 318 | 3.23e-89 | 274 |
| Msa0830210 | AT5G09690.3 | 45.961 | 359 | 140 | 4 | 19 | 375 | 12 | 318 | 4.35e-89 | 274 |
| Msa0830210 | AT5G09690.8 | 45.152 | 361 | 144 | 4 | 19 | 377 | 23 | 331 | 1.17e-85 | 266 |
| Msa0830210 | AT5G09690.11 | 45.152 | 361 | 144 | 4 | 19 | 377 | 23 | 331 | 1.17e-85 | 266 |
| Msa0830210 | AT5G09690.13 | 45.378 | 357 | 145 | 3 | 19 | 375 | 23 | 329 | 2.12e-85 | 265 |
| Msa0830210 | AT5G09690.4 | 38.785 | 428 | 190 | 8 | 19 | 444 | 12 | 369 | 1.74e-73 | 235 |
| Msa0830210 | AT4G28580.1 | 33.487 | 433 | 204 | 11 | 27 | 445 | 46 | 408 | 7.80e-67 | 219 |
| Msa0830210 | AT5G09690.14 | 53.881 | 219 | 93 | 2 | 19 | 235 | 23 | 235 | 1.05e-66 | 215 |
| Msa0830210 | AT5G09690.10 | 53.881 | 219 | 93 | 2 | 19 | 235 | 23 | 235 | 1.05e-66 | 215 |
| Msa0830210 | AT5G09690.6 | 53.881 | 219 | 93 | 2 | 19 | 235 | 23 | 235 | 1.05e-66 | 215 |
| Msa0830210 | AT5G09690.5 | 53.917 | 217 | 96 | 1 | 19 | 235 | 12 | 224 | 1.24e-66 | 215 |
| Msa0830210 | AT5G09720.1 | 48.837 | 215 | 102 | 2 | 23 | 235 | 8 | 216 | 6.80e-58 | 192 |
| Msa0830210 | AT5G09720.2 | 48.837 | 215 | 102 | 2 | 23 | 235 | 8 | 216 | 6.80e-58 | 192 |
| Msa0830210 | AT5G64560.1 | 47.794 | 136 | 67 | 2 | 309 | 444 | 261 | 392 | 7.96e-32 | 125 |
| Msa0830210 | AT5G64560.2 | 50.806 | 124 | 44 | 3 | 309 | 432 | 261 | 367 | 3.36e-29 | 118 |
| Msa0830210 | AT5G22830.1 | 29.016 | 193 | 118 | 4 | 39 | 227 | 135 | 312 | 2.65e-11 | 65.9 |
| Msa0830210 | AT5G22830.2 | 29.016 | 193 | 118 | 4 | 39 | 227 | 135 | 312 | 2.65e-11 | 65.9 |
Find 130 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGAGGGTTGTAAAATT+TGG | 0.093469 | 5_4:+3263868 | None:intergenic |
| TGTTTGGTGCTTCGAATTTA+AGG | 0.165870 | 5_4:+3264865 | Msa0830210:CDS |
| ACGCATGATGGCGTGCTTTC+CGG | 0.208340 | 5_4:-3264115 | None:intergenic |
| AGCCGTTTGGTTGCGATTAC+TGG | 0.222757 | 5_4:+3264567 | Msa0830210:CDS |
| GAAGATTAGTACTCTCAATT+TGG | 0.225739 | 5_4:+3264524 | Msa0830210:CDS |
| ACTGTTGGCGGCGGCACTGC+TGG | 0.245438 | 5_4:+3266216 | Msa0830210:CDS |
| ATTGGAGGGTTGTAAAATTT+GGG | 0.275816 | 5_4:+3263869 | None:intergenic |
| TGAAGCAGCTTGTAGTGTTT+TGG | 0.284919 | 5_4:+3264443 | Msa0830210:CDS |
| ATCGCTACCGTTGGCGTTAC+CGG | 0.300032 | 5_4:-3263983 | None:intergenic |
| ATATCGTTGGAAGCGGGTTT+AGG | 0.335773 | 5_4:+3264783 | Msa0830210:CDS |
| GTGCAAGCACAAACGCTTGC+TGG | 0.343936 | 5_4:+3266272 | Msa0830210:CDS |
| GTACCTTTCTTCCGAATTGC+CGG | 0.346470 | 5_4:-3264036 | None:intergenic |
| TCCTACCCTTCCACCGTTCT+CGG | 0.346952 | 5_4:+3264186 | Msa0830210:CDS |
| AGTGCCTTCGTTGTTGTTGC+TGG | 0.353794 | 5_4:+3266123 | Msa0830210:CDS |
| CTGTTGGCGGCGGCACTGCT+GGG | 0.366005 | 5_4:+3266217 | Msa0830210:CDS |
| TGCTCCTCGTCCTGATAATC+AGG | 0.376856 | 5_4:+3264359 | Msa0830210:CDS |
| TGAGAATCTTCCTGATTATC+AGG | 0.379240 | 5_4:-3264369 | None:intergenic |
| GTTTGGTGCTTCGAATTTAA+GGG | 0.389449 | 5_4:+3264866 | Msa0830210:CDS |
| CTGTTTGATGATAAATTGTA+TGG | 0.401637 | 5_4:+3266174 | Msa0830210:CDS |
| CAAGCGTTTGTGCTTGCACC+AGG | 0.405920 | 5_4:-3266268 | None:intergenic |
| TGCTCTTTCTCTTCCGAGAA+CGG | 0.416716 | 5_4:-3264199 | None:intergenic |
| TGCACGTGACCTTCGAATCC+TGG | 0.419970 | 5_4:+3264152 | Msa0830210:CDS |
| GATGTTGATGTTAATCAAAC+TGG | 0.433420 | 5_4:+3264747 | Msa0830210:CDS |
| GAAGTCACTTCAACAGCAAT+TGG | 0.436400 | 5_4:+3264668 | Msa0830210:CDS |
| AGCAACCACATACAAGAATA+TGG | 0.438257 | 5_4:-3266241 | None:intergenic |
| ACAGAACCATCTTCTCCAAA+TGG | 0.439397 | 5_4:+3266068 | Msa0830210:CDS |
| CCGCCGCCGTACCGGCAATT+CGG | 0.439847 | 5_4:+3264025 | Msa0830210:CDS |
| CTCGATTACCTGTGCTTCGC+CGG | 0.441216 | 5_4:-3264091 | None:intergenic |
| CTCCTCAACATCAAGCTTAG+TGG | 0.445396 | 5_4:-3264931 | None:intergenic |
| TGTATGTGGTTGCTATTGCC+TGG | 0.445914 | 5_4:+3266250 | Msa0830210:CDS |
| AATTCTAGAGAGCAAATGTT+TGG | 0.448954 | 5_4:+3264849 | Msa0830210:CDS |
| TGACTCCCATTTGGAGAAGA+TGG | 0.450914 | 5_4:-3266074 | None:intergenic |
| GCTTGATGATGATGAAGATA+TGG | 0.464583 | 5_4:+3264626 | Msa0830210:CDS |
| AACAGCTGCCGCCGCCGTAC+CGG | 0.467572 | 5_4:+3264017 | Msa0830210:CDS |
| TGAGGAGCTTGAGATGCTCT+TGG | 0.467583 | 5_4:+3264947 | Msa0830210:CDS |
| AGGAGGAGAGGTGAATTATG+AGG | 0.467721 | 5_4:+3264809 | Msa0830210:CDS |
| TCCGTTTGAATTCGTTGCGC+TGG | 0.471296 | 5_4:+3264410 | Msa0830210:CDS |
| CAAACGCTTGCTGGAGTGAA+TGG | 0.472005 | 5_4:+3266281 | Msa0830210:exon |
| CATGTTGACCACGGCAACTC+TGG | 0.474836 | 5_4:+3266095 | Msa0830210:CDS |
| GAGAAGAAGAACTTCGTTTG+CGG | 0.477402 | 5_4:-3264259 | None:intergenic |
| GCCGTTTGGTTGCGATTACT+GGG | 0.478784 | 5_4:+3264568 | Msa0830210:CDS |
| GGTGAATTATGAGGAGGATG+AGG | 0.479462 | 5_4:+3264818 | Msa0830210:CDS |
| TTCGTGATGACGAAGAATCC+TGG | 0.480391 | 5_4:-3264328 | None:intergenic |
| GGTAGGAGAGGAGAGGGTCC+AGG | 0.480489 | 5_4:-3264170 | None:intergenic |
| GAGTTTATGTGGACTGTTGG+CGG | 0.482690 | 5_4:+3266204 | Msa0830210:CDS |
| GAAGCGGGTTTAGGAGGAGG+AGG | 0.484156 | 5_4:+3264792 | Msa0830210:CDS |
| CCGAATTGCCGGTACGGCGG+CGG | 0.484334 | 5_4:-3264025 | None:intergenic |
| CGTCAATGGCTGGTTGTTGA+CGG | 0.484415 | 5_4:+3264066 | Msa0830210:CDS |
| CACGCCATCATGCGTCGTAC+CGG | 0.485557 | 5_4:+3264123 | Msa0830210:CDS |
| TTGGAAGCGGGTTTAGGAGG+AGG | 0.490530 | 5_4:+3264789 | Msa0830210:CDS |
| GGGTTTAGGAGGAGGAGGAG+AGG | 0.493637 | 5_4:+3264797 | Msa0830210:CDS |
| TGGTCAACATGACTCCCATT+TGG | 0.493890 | 5_4:-3266083 | None:intergenic |
| AAGGTACAAGCGTTCGTCAA+TGG | 0.506236 | 5_4:+3264052 | Msa0830210:CDS |
| TTATCATGAACATCATGATC+AGG | 0.508556 | 5_4:-3264723 | None:intergenic |
| AGGATTCGAAGGTCACGTGC+AGG | 0.509325 | 5_4:-3264150 | None:intergenic |
| TGAGTGAAGAAGAGTAGCGT+AGG | 0.509949 | 5_4:+3263924 | Msa0830210:five_prime_UTR |
| TGGGACCATATTCTTGTATG+TGG | 0.512820 | 5_4:+3266236 | Msa0830210:CDS |
| CAGAACCATCTTCTCCAAAT+GGG | 0.517721 | 5_4:+3266069 | Msa0830210:CDS |
| TTTGGTTGCGATTACTGGGA+GGG | 0.518348 | 5_4:+3264572 | Msa0830210:CDS |
| AAGGTCACGTGCAGGGAGGC+CGG | 0.519707 | 5_4:-3264142 | None:intergenic |
| TCGTCAGATTAAGAGCCGTT+TGG | 0.523284 | 5_4:+3264554 | Msa0830210:CDS |
| TCGTTCAAGAGCTTCAAGCC+AGG | 0.526920 | 5_4:+3264310 | Msa0830210:CDS |
| TACAAGCGTTCGTCAATGGC+TGG | 0.527925 | 5_4:+3264056 | Msa0830210:CDS |
| TGCTGAGATATCGTTGGAAG+CGG | 0.529462 | 5_4:+3264776 | Msa0830210:CDS |
| TGGCTGGTTGTTGACGGCAC+CGG | 0.538585 | 5_4:+3264072 | Msa0830210:CDS |
| ACGCCAACGGTAGCGATGAC+CGG | 0.540694 | 5_4:+3263989 | Msa0830210:CDS |
| TGACGGCACCGGCGAAGCAC+AGG | 0.542644 | 5_4:+3264083 | Msa0830210:CDS |
| TCCCAGTAATCGCAACCAAA+CGG | 0.543100 | 5_4:-3264569 | None:intergenic |
| TCTCTTCCGAGAACGGTGGA+AGG | 0.543564 | 5_4:-3264192 | None:intergenic |
| TTCAACAGTGTCTTCATCAG+AGG | 0.545221 | 5_4:-3264697 | None:intergenic |
| GAAGTCAATTTATCAAGCGC+AGG | 0.545824 | 5_4:-3264501 | None:intergenic |
| GCTGAGATATCGTTGGAAGC+GGG | 0.545841 | 5_4:+3264777 | Msa0830210:CDS |
| CACCACTAAGCTTGATGTTG+AGG | 0.552846 | 5_4:+3264929 | Msa0830210:CDS |
| TCCAGCGCAACGAATTCAAA+CGG | 0.553760 | 5_4:-3264411 | None:intergenic |
| GGAGAGGGTCCAGGATTCGA+AGG | 0.557929 | 5_4:-3264161 | None:intergenic |
| TTTCTTCCGAATTGCCGGTA+CGG | 0.558235 | 5_4:-3264031 | None:intergenic |
| AAGATGCGAGGAAACGTCAC+CGG | 0.560599 | 5_4:+3263964 | Msa0830210:exon |
| ATGGGATGAGAGAGTTTATG+TGG | 0.562365 | 5_4:+3266193 | Msa0830210:CDS |
| CCACCGGTCATCGCTACCGT+TGG | 0.563218 | 5_4:-3263992 | None:intergenic |
| CTCTTGAACGAAAGGAGTAA+CGG | 0.563746 | 5_4:-3264298 | None:intergenic |
| TCGTTGGAAGCGGGTTTAGG+AGG | 0.564325 | 5_4:+3264786 | Msa0830210:CDS |
| GAAGCACAGGTAATCGAGGC+CGG | 0.564508 | 5_4:+3264096 | Msa0830210:CDS |
| GCTTACTTTGTTCAGATCGA+CGG | 0.566014 | 5_4:+3264972 | Msa0830210:CDS |
| AAAACAAACATAATGTACAC+GGG | 0.571581 | 5_4:-3266549 | None:intergenic |
| GCTTGAAGCTCTTGAACGAA+AGG | 0.572210 | 5_4:-3264306 | None:intergenic |
| CTCTTCCGAGAACGGTGGAA+GGG | 0.575974 | 5_4:-3264191 | None:intergenic |
| GTACCGGCAATTCGGAAGAA+AGG | 0.580132 | 5_4:+3264033 | Msa0830210:CDS |
| TGGAAGGGTAGGAGAGGAGA+GGG | 0.581421 | 5_4:-3264176 | None:intergenic |
| ACCAGGTGCTGAGATATCGT+TGG | 0.584563 | 5_4:+3264770 | Msa0830210:CDS |
| AGGAGAGGTGAATTATGAGG+AGG | 0.586365 | 5_4:+3264812 | Msa0830210:CDS |
| GAGGCCGGTACGACGCATGA+TGG | 0.587077 | 5_4:-3264127 | None:intergenic |
| CGGCGGCAGCTGTTCCCCAC+CGG | 0.591719 | 5_4:-3264008 | None:intergenic |
| AGAGAGTTTATGTGGACTGT+TGG | 0.592926 | 5_4:+3266201 | Msa0830210:CDS |
| CAACGGTAGCGATGACCGGT+GGG | 0.594792 | 5_4:+3263993 | Msa0830210:CDS |
| GGAGAGTGAAGCAAAGACGC+TGG | 0.597867 | 5_4:+3264464 | Msa0830210:CDS |
| TTTATGTGGACTGTTGGCGG+CGG | 0.601940 | 5_4:+3266207 | Msa0830210:CDS |
| AGCAAAGACGCTGGAACAAG+AGG | 0.602892 | 5_4:+3264473 | Msa0830210:CDS |
| CTTCCGAATTGCCGGTACGG+CGG | 0.605828 | 5_4:-3264028 | None:intergenic |
| CACTCTCAATAAGCTCTCAA+CGG | 0.611809 | 5_4:+3264995 | Msa0830210:CDS |
| GGATTCGAAGGTCACGTGCA+GGG | 0.614484 | 5_4:-3264149 | None:intergenic |
| TCCAACGATATCTCAGCACC+TGG | 0.620597 | 5_4:-3264771 | None:intergenic |
| AACGTCACCGGTAACGCCAA+CGG | 0.620696 | 5_4:+3263976 | Msa0830210:CDS |
| TCCGAGAACGGTGGAAGGGT+AGG | 0.621308 | 5_4:-3264187 | None:intergenic |
| TGTTTGATGATAAATTGTAT+GGG | 0.621429 | 5_4:+3266175 | Msa0830210:CDS |
| GAACGGTGGAAGGGTAGGAG+AGG | 0.622247 | 5_4:-3264182 | None:intergenic |
| CCAACGGTAGCGATGACCGG+TGG | 0.624688 | 5_4:+3263992 | Msa0830210:CDS |
| GTTGACCACGGCAACTCTGG+TGG | 0.627812 | 5_4:+3266098 | Msa0830210:CDS |
| CTCAACATCAAGCTTAGTGG+TGG | 0.628847 | 5_4:-3264928 | None:intergenic |
| TAGTGCTTGCACGTGTTCCG+CGG | 0.631370 | 5_4:-3264893 | None:intergenic |
| GTTTGGTTGCGATTACTGGG+AGG | 0.636774 | 5_4:+3264571 | Msa0830210:CDS |
| ATTATCAGGACGAGGAGCAG+TGG | 0.639109 | 5_4:-3264355 | None:intergenic |
| TCTTCCTGATTATCAGGACG+AGG | 0.641967 | 5_4:-3264363 | None:intergenic |
| CGGCGAAGCACAGGTAATCG+AGG | 0.643846 | 5_4:+3264092 | Msa0830210:CDS |
| GTGGAAGGGTAGGAGAGGAG+AGG | 0.646101 | 5_4:-3264177 | None:intergenic |
| TGAACGAAAGGAGTAACGGA+AGG | 0.650529 | 5_4:-3264294 | None:intergenic |
| ACTTACCACCAGAGTTGCCG+TGG | 0.664332 | 5_4:-3266103 | None:intergenic |
| GATGTTAATCAAACTGGACC+AGG | 0.673948 | 5_4:+3264753 | Msa0830210:CDS |
| AATACCAGCAACAACAACGA+AGG | 0.674729 | 5_4:-3266127 | None:intergenic |
| AACGGTAGCGATGACCGGTG+GGG | 0.675836 | 5_4:+3263994 | Msa0830210:CDS |
| GATAATCAGGAAGATTCTCA+CGG | 0.676638 | 5_4:+3264372 | Msa0830210:CDS |
| GAAGCAAATAGATGTCGTAG+AGG | 0.679419 | 5_4:-3266389 | None:intergenic |
| TCTTTCTCTTCCGAGAACGG+TGG | 0.682175 | 5_4:-3264196 | None:intergenic |
| ACATTATTTATGTAGCACAA+CGG | 0.683769 | 5_4:-3266308 | None:intergenic |
| AATGGGAGTCATGTTGACCA+CGG | 0.693986 | 5_4:+3266086 | Msa0830210:CDS |
| AAACAAACATAATGTACACG+GGG | 0.696153 | 5_4:-3266548 | None:intergenic |
| TTCGAAGGTCACGTGCAGGG+AGG | 0.702733 | 5_4:-3264146 | None:intergenic |
| TCGAATTTAAGGGATAGCCG+CGG | 0.713074 | 5_4:+3264876 | Msa0830210:CDS |
| TGATGATGATGAAGATATGG+CGG | 0.716447 | 5_4:+3264629 | Msa0830210:CDS |
| GGAGTATGTTGATGACACAG+AGG | 0.741575 | 5_4:+3266017 | Msa0830210:CDS |
| AATCAGGAAGATTCTCACGG+CGG | 0.760544 | 5_4:+3264375 | Msa0830210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATGAGTATATATTA+TGG | + | chr5_4:3265837-3265856 | Msa0830210:intron | 10.0% |
| !! | AAATCAAGGAAATGTTAAAT+AGG | - | chr5_4:3265028-3265047 | None:intergenic | 20.0% |
| !!! | TTTAACATTTCCTTGATTTT+AGG | + | chr5_4:3265029-3265048 | Msa0830210:intron | 20.0% |
| !! | AGATAATTATAATCAATCCA+AGG | - | chr5_4:3265534-3265553 | None:intergenic | 20.0% |
| !! | TATGAAAATTGTATCTTCAT+AGG | - | chr5_4:3265563-3265582 | None:intergenic | 20.0% |
| !!! | TGATTTTTCATAAACTAACT+TGG | + | chr5_4:3265620-3265639 | Msa0830210:intron | 20.0% |
| !! | GATAAATTATAATCAATCCA+AGG | - | chr5_4:3265805-3265824 | None:intergenic | 20.0% |
| !! | TAATAGCAATTATATAAACC+AGG | - | chr5_4:3265870-3265889 | None:intergenic | 20.0% |
| !!! | TGTTTGATGATAAATTGTAT+GGG | + | chr5_4:3266175-3266194 | Msa0830210:CDS | 20.0% |
| !!! | AATTACAATTTTACAGAACA+CGG | - | chr5_4:3266360-3266379 | None:intergenic | 20.0% |
| !! | AAAAACAAACATAATGTACA+CGG | - | chr5_4:3266553-3266572 | None:intergenic | 20.0% |
| ! | GTTATAGAAACCTAAAATCA+AGG | - | chr5_4:3265042-3265061 | None:intergenic | 25.0% |
| !!! | CATTAGTGTTTTTAACTTGT+TGG | - | chr5_4:3265088-3265107 | None:intergenic | 25.0% |
| ! | AAAAATAAGCCAATCCAAAA+GGG | - | chr5_4:3265362-3265381 | None:intergenic | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+AGG | - | chr5_4:3265363-3265382 | None:intergenic | 25.0% |
| ! | ATATATTATGGTACAATACC+TGG | + | chr5_4:3265849-3265868 | Msa0830210:intron | 25.0% |
| ! | TATGTGATATGATGTTACTA+TGG | + | chr5_4:3265896-3265915 | Msa0830210:intron | 25.0% |
| !! | CTGTTTGATGATAAATTGTA+TGG | + | chr5_4:3266174-3266193 | Msa0830210:CDS | 25.0% |
| ! | ACATTATTTATGTAGCACAA+CGG | - | chr5_4:3266311-3266330 | None:intergenic | 25.0% |
| ! | GTACAAGAAAAATTAGTTGA+AGG | - | chr5_4:3266430-3266449 | None:intergenic | 25.0% |
| !! | TTTTCTTGTACATTGTTGTA+TGG | + | chr5_4:3266439-3266458 | Msa0830210:three_prime_UTR | 25.0% |
| ! | AAAACAAACATAATGTACAC+GGG | - | chr5_4:3266552-3266571 | None:intergenic | 25.0% |
| TCGAATTCCACACAAAAAAT+TGG | + | chr5_4:3263893-3263912 | Msa0830210:five_prime_UTR | 30.0% | |
| CGAATTCCACACAAAAAATT+GGG | + | chr5_4:3263894-3263913 | Msa0830210:five_prime_UTR | 30.0% | |
| GAAGATTAGTACTCTCAATT+TGG | + | chr5_4:3264524-3264543 | Msa0830210:CDS | 30.0% | |
| TCAAAAAGTGAGAGATGAAT+TGG | + | chr5_4:3264596-3264615 | Msa0830210:CDS | 30.0% | |
| TTATCATGAACATCATGATC+AGG | - | chr5_4:3264726-3264745 | None:intergenic | 30.0% | |
| GATGTTGATGTTAATCAAAC+TGG | + | chr5_4:3264747-3264766 | Msa0830210:CDS | 30.0% | |
| ! | AATTCTAGAGAGCAAATGTT+TGG | + | chr5_4:3264849-3264868 | Msa0830210:CDS | 30.0% |
| CAAGGAAATGTTAAATAGGA+AGG | - | chr5_4:3265024-3265043 | None:intergenic | 30.0% | |
| ! | TTTTTGCTTTCTGATCTAGT+TGG | + | chr5_4:3265127-3265146 | Msa0830210:intron | 30.0% |
| TATGTCACTAGATAAGTTCA+AGG | + | chr5_4:3265335-3265354 | Msa0830210:intron | 30.0% | |
| ATGTCACTAGATAAGTTCAA+GGG | + | chr5_4:3265336-3265355 | Msa0830210:intron | 30.0% | |
| AAATCAGCTTATGAAGTAGT+AGG | + | chr5_4:3265459-3265478 | Msa0830210:intron | 30.0% | |
| ! | TCTTTGGATTGACTTATTTG+GGG | - | chr5_4:3265729-3265748 | None:intergenic | 30.0% |
| ! | CTCTTTGGATTGACTTATTT+GGG | - | chr5_4:3265730-3265749 | None:intergenic | 30.0% |
| ! | TCTCTTTGGATTGACTTATT+TGG | - | chr5_4:3265731-3265750 | None:intergenic | 30.0% |
| !! | GCTGATACTTTGTTATTTGT+TGG | + | chr5_4:3265975-3265994 | Msa0830210:intron | 30.0% |
| AAACAAACATAATGTACACG+GGG | - | chr5_4:3266551-3266570 | None:intergenic | 30.0% | |
| !!! | TTCGTTCCCAATTTTTTGTG+TGG | - | chr5_4:3263903-3263922 | None:intergenic | 35.0% |
| CAGAAAAAATCAAAGATGCG+AGG | + | chr5_4:3263952-3263971 | Msa0830210:exon | 35.0% | |
| TGAGAATCTTCCTGATTATC+AGG | - | chr5_4:3264372-3264391 | None:intergenic | 35.0% | |
| GATAATCAGGAAGATTCTCA+CGG | + | chr5_4:3264372-3264391 | Msa0830210:CDS | 35.0% | |
| !! | GCTTGATGATGATGAAGATA+TGG | + | chr5_4:3264626-3264645 | Msa0830210:CDS | 35.0% |
| ! | TGATGATGATGAAGATATGG+CGG | + | chr5_4:3264629-3264648 | Msa0830210:CDS | 35.0% |
| !! | TGTTTGGTGCTTCGAATTTA+AGG | + | chr5_4:3264865-3264884 | Msa0830210:CDS | 35.0% |
| !! | GTTTGGTGCTTCGAATTTAA+GGG | + | chr5_4:3264866-3264885 | Msa0830210:CDS | 35.0% |
| !!! | GTGTTTTTAACTTGTTGGAC+TGG | - | chr5_4:3265083-3265102 | None:intergenic | 35.0% |
| CTTATTTCCACAAACTCACT+AGG | - | chr5_4:3265247-3265266 | None:intergenic | 35.0% | |
| ! | CACTTTATGGTTTGTACTTG+AGG | + | chr5_4:3265508-3265527 | Msa0830210:intron | 35.0% |
| CAAAAATAAGCCGATCCAAA+CGG | + | chr5_4:3265701-3265720 | Msa0830210:intron | 35.0% | |
| AAAAATAAGCCGATCCAAAC+GGG | + | chr5_4:3265702-3265721 | Msa0830210:intron | 35.0% | |
| ! | CAAAGTATCAGCAACAAAGA+AGG | - | chr5_4:3265967-3265986 | None:intergenic | 35.0% |
| !! | GTTGTTGTTGCTGGTATTTT+TGG | + | chr5_4:3266132-3266151 | Msa0830210:CDS | 35.0% |
| AGCAACCACATACAAGAATA+TGG | - | chr5_4:3266244-3266263 | None:intergenic | 35.0% | |
| GAGAAGAAGAACTTCGTTTG+CGG | - | chr5_4:3264262-3264281 | None:intergenic | 40.0% | |
| CTCTTGAACGAAAGGAGTAA+CGG | - | chr5_4:3264301-3264320 | None:intergenic | 40.0% | |
| ! | TGAAGCAGCTTGTAGTGTTT+TGG | + | chr5_4:3264443-3264462 | Msa0830210:CDS | 40.0% |
| GAAGTCAATTTATCAAGCGC+AGG | - | chr5_4:3264504-3264523 | None:intergenic | 40.0% | |
| GAAGTCACTTCAACAGCAAT+TGG | + | chr5_4:3264668-3264687 | Msa0830210:CDS | 40.0% | |
| TTCAACAGTGTCTTCATCAG+AGG | - | chr5_4:3264700-3264719 | None:intergenic | 40.0% | |
| GATGTTAATCAAACTGGACC+AGG | + | chr5_4:3264753-3264772 | Msa0830210:CDS | 40.0% | |
| GCTTACTTTGTTCAGATCGA+CGG | + | chr5_4:3264972-3264991 | Msa0830210:CDS | 40.0% | |
| CACTCTCAATAAGCTCTCAA+CGG | + | chr5_4:3264995-3265014 | Msa0830210:CDS | 40.0% | |
| ATGCTATCCTAGTGAGTTTG+TGG | + | chr5_4:3265237-3265256 | Msa0830210:intron | 40.0% | |
| ATCGGTACTAAGAGTCTCTT+TGG | - | chr5_4:3265745-3265764 | None:intergenic | 40.0% | |
| ACAGAACCATCTTCTCCAAA+TGG | + | chr5_4:3266068-3266087 | Msa0830210:CDS | 40.0% | |
| CAGAACCATCTTCTCCAAAT+GGG | + | chr5_4:3266069-3266088 | Msa0830210:CDS | 40.0% | |
| AATACCAGCAACAACAACGA+AGG | - | chr5_4:3266130-3266149 | None:intergenic | 40.0% | |
| ATGGGATGAGAGAGTTTATG+TGG | + | chr5_4:3266193-3266212 | Msa0830210:CDS | 40.0% | |
| ! | AGAGAGTTTATGTGGACTGT+TGG | + | chr5_4:3266201-3266220 | Msa0830210:CDS | 40.0% |
| TGGGACCATATTCTTGTATG+TGG | + | chr5_4:3266236-3266255 | Msa0830210:CDS | 40.0% | |
| GAAGCAAATAGATGTCGTAG+AGG | - | chr5_4:3266392-3266411 | None:intergenic | 40.0% | |
| TGAGTGAAGAAGAGTAGCGT+AGG | + | chr5_4:3263924-3263943 | Msa0830210:five_prime_UTR | 45.0% | |
| TTTCTTCCGAATTGCCGGTA+CGG | - | chr5_4:3264034-3264053 | None:intergenic | 45.0% | |
| GTACCTTTCTTCCGAATTGC+CGG | - | chr5_4:3264039-3264058 | None:intergenic | 45.0% | |
| AAGGTACAAGCGTTCGTCAA+TGG | + | chr5_4:3264052-3264071 | Msa0830210:CDS | 45.0% | |
| TGCTCTTTCTCTTCCGAGAA+CGG | - | chr5_4:3264202-3264221 | None:intergenic | 45.0% | |
| ! | TGAACGAAAGGAGTAACGGA+AGG | - | chr5_4:3264297-3264316 | None:intergenic | 45.0% |
| GCTTGAAGCTCTTGAACGAA+AGG | - | chr5_4:3264309-3264328 | None:intergenic | 45.0% | |
| ! | TTCGTGATGACGAAGAATCC+TGG | - | chr5_4:3264331-3264350 | None:intergenic | 45.0% |
| TCTTCCTGATTATCAGGACG+AGG | - | chr5_4:3264366-3264385 | None:intergenic | 45.0% | |
| AATCAGGAAGATTCTCACGG+CGG | + | chr5_4:3264375-3264394 | Msa0830210:CDS | 45.0% | |
| TCCAGCGCAACGAATTCAAA+CGG | - | chr5_4:3264414-3264433 | None:intergenic | 45.0% | |
| TCGTCAGATTAAGAGCCGTT+TGG | + | chr5_4:3264554-3264573 | Msa0830210:CDS | 45.0% | |
| TCCCAGTAATCGCAACCAAA+CGG | - | chr5_4:3264572-3264591 | None:intergenic | 45.0% | |
| TTTGGTTGCGATTACTGGGA+GGG | + | chr5_4:3264572-3264591 | Msa0830210:CDS | 45.0% | |
| TGCTGAGATATCGTTGGAAG+CGG | + | chr5_4:3264776-3264795 | Msa0830210:CDS | 45.0% | |
| ! | ATATCGTTGGAAGCGGGTTT+AGG | + | chr5_4:3264783-3264802 | Msa0830210:CDS | 45.0% |
| AGGAGGAGAGGTGAATTATG+AGG | + | chr5_4:3264809-3264828 | Msa0830210:CDS | 45.0% | |
| AGGAGAGGTGAATTATGAGG+AGG | + | chr5_4:3264812-3264831 | Msa0830210:CDS | 45.0% | |
| GGTGAATTATGAGGAGGATG+AGG | + | chr5_4:3264818-3264837 | Msa0830210:CDS | 45.0% | |
| TCGAATTTAAGGGATAGCCG+CGG | + | chr5_4:3264876-3264895 | Msa0830210:CDS | 45.0% | |
| CTCAACATCAAGCTTAGTGG+TGG | - | chr5_4:3264931-3264950 | None:intergenic | 45.0% | |
| CACCACTAAGCTTGATGTTG+AGG | + | chr5_4:3264929-3264948 | Msa0830210:CDS | 45.0% | |
| CTCCTCAACATCAAGCTTAG+TGG | - | chr5_4:3264934-3264953 | None:intergenic | 45.0% | |
| ! | GATAAGTTCAAGGGCCCTTT+TGG | + | chr5_4:3265345-3265364 | Msa0830210:intron | 45.0% |
| ! | ATGGTTTGTACTTGAGGCCT+TGG | + | chr5_4:3265514-3265533 | Msa0830210:intron | 45.0% |
| ! | GACTTGATGGTCTGTACTTG+AGG | + | chr5_4:3265779-3265798 | Msa0830210:intron | 45.0% |
| ! | TGGTTGTCTTGTTGAAGCTG+AGG | + | chr5_4:3265995-3266014 | Msa0830210:intron | 45.0% |
| ! | GGTTGTCTTGTTGAAGCTGA+GGG | + | chr5_4:3265996-3266015 | Msa0830210:intron | 45.0% |
| !! | GGAGTATGTTGATGACACAG+AGG | + | chr5_4:3266017-3266036 | Msa0830210:CDS | 45.0% |
| TGACTCCCATTTGGAGAAGA+TGG | - | chr5_4:3266077-3266096 | None:intergenic | 45.0% | |
| TGGTCAACATGACTCCCATT+TGG | - | chr5_4:3266086-3266105 | None:intergenic | 45.0% | |
| AATGGGAGTCATGTTGACCA+CGG | + | chr5_4:3266086-3266105 | Msa0830210:CDS | 45.0% | |
| ! | GAGTTTATGTGGACTGTTGG+CGG | + | chr5_4:3266204-3266223 | Msa0830210:CDS | 45.0% |
| ! | TGTATGTGGTTGCTATTGCC+TGG | + | chr5_4:3266250-3266269 | Msa0830210:CDS | 45.0% |
| AAGATGCGAGGAAACGTCAC+CGG | + | chr5_4:3263964-3263983 | Msa0830210:exon | 50.0% | |
| ! | GTACCGGCAATTCGGAAGAA+AGG | + | chr5_4:3264033-3264052 | Msa0830210:CDS | 50.0% |
| TACAAGCGTTCGTCAATGGC+TGG | + | chr5_4:3264056-3264075 | Msa0830210:CDS | 50.0% | |
| ! | CGTCAATGGCTGGTTGTTGA+CGG | + | chr5_4:3264066-3264085 | Msa0830210:CDS | 50.0% |
| TCTTTCTCTTCCGAGAACGG+TGG | - | chr5_4:3264199-3264218 | None:intergenic | 50.0% | |
| TCGTTCAAGAGCTTCAAGCC+AGG | + | chr5_4:3264310-3264329 | Msa0830210:CDS | 50.0% | |
| ATTATCAGGACGAGGAGCAG+TGG | - | chr5_4:3264358-3264377 | None:intergenic | 50.0% | |
| TGCTCCTCGTCCTGATAATC+AGG | + | chr5_4:3264359-3264378 | Msa0830210:CDS | 50.0% | |
| TCCGTTTGAATTCGTTGCGC+TGG | + | chr5_4:3264410-3264429 | Msa0830210:CDS | 50.0% | |
| AGCAAAGACGCTGGAACAAG+AGG | + | chr5_4:3264473-3264492 | Msa0830210:CDS | 50.0% | |
| AGCCGTTTGGTTGCGATTAC+TGG | + | chr5_4:3264567-3264586 | Msa0830210:CDS | 50.0% | |
| GCCGTTTGGTTGCGATTACT+GGG | + | chr5_4:3264568-3264587 | Msa0830210:CDS | 50.0% | |
| GTTTGGTTGCGATTACTGGG+AGG | + | chr5_4:3264571-3264590 | Msa0830210:CDS | 50.0% | |
| !! | ACCAGGTGCTGAGATATCGT+TGG | + | chr5_4:3264770-3264789 | Msa0830210:CDS | 50.0% |
| TCCAACGATATCTCAGCACC+TGG | - | chr5_4:3264774-3264793 | None:intergenic | 50.0% | |
| GCTGAGATATCGTTGGAAGC+GGG | + | chr5_4:3264777-3264796 | Msa0830210:CDS | 50.0% | |
| TGAGGAGCTTGAGATGCTCT+TGG | + | chr5_4:3264947-3264966 | Msa0830210:CDS | 50.0% | |
| ! | GTTCAAGGGCCCTTTTGGAT+TGG | + | chr5_4:3265350-3265369 | Msa0830210:intron | 50.0% |
| ! | ACCATAAAGTGCTCTCCGCT+CGG | - | chr5_4:3265499-3265518 | None:intergenic | 50.0% |
| ! | ATTTGGGGTCCCGTTTGGAT+CGG | - | chr5_4:3265714-3265733 | None:intergenic | 50.0% |
| ! | GACTTATTTGGGGTCCCGTT+TGG | - | chr5_4:3265719-3265738 | None:intergenic | 50.0% |
| !! | TCTTAGTACCGATTACCGCG+AGG | + | chr5_4:3265752-3265771 | Msa0830210:intron | 50.0% |
| AGTCTTCTCCTCGCGGTAAT+CGG | - | chr5_4:3265763-3265782 | None:intergenic | 50.0% | |
| ACCATCAAGTCTTCTCCTCG+CGG | - | chr5_4:3265770-3265789 | None:intergenic | 50.0% | |
| ATGGTCTGTACTTGAGGCCT+TGG | + | chr5_4:3265785-3265804 | Msa0830210:intron | 50.0% | |
| ! | AGTGCCTTCGTTGTTGTTGC+TGG | + | chr5_4:3266123-3266142 | Msa0830210:CDS | 50.0% |
| ! | TTTATGTGGACTGTTGGCGG+CGG | + | chr5_4:3266207-3266226 | Msa0830210:CDS | 50.0% |
| ! | CAAACGCTTGCTGGAGTGAA+TGG | + | chr5_4:3266281-3266300 | Msa0830210:exon | 50.0% |
| AACGTCACCGGTAACGCCAA+CGG | + | chr5_4:3263976-3263995 | Msa0830210:CDS | 55.0% | |
| ATCGCTACCGTTGGCGTTAC+CGG | - | chr5_4:3263986-3264005 | None:intergenic | 55.0% | |
| CTCGATTACCTGTGCTTCGC+CGG | - | chr5_4:3264094-3264113 | None:intergenic | 55.0% | |
| GAAGCACAGGTAATCGAGGC+CGG | + | chr5_4:3264096-3264115 | Msa0830210:CDS | 55.0% | |
| ! | ACGCATGATGGCGTGCTTTC+CGG | - | chr5_4:3264118-3264137 | None:intergenic | 55.0% |
| GGATTCGAAGGTCACGTGCA+GGG | - | chr5_4:3264152-3264171 | None:intergenic | 55.0% | |
| AGGATTCGAAGGTCACGTGC+AGG | - | chr5_4:3264153-3264172 | None:intergenic | 55.0% | |
| TGCACGTGACCTTCGAATCC+TGG | + | chr5_4:3264152-3264171 | Msa0830210:CDS | 55.0% | |
| TGGAAGGGTAGGAGAGGAGA+GGG | - | chr5_4:3264179-3264198 | None:intergenic | 55.0% | |
| TCCTACCCTTCCACCGTTCT+CGG | + | chr5_4:3264186-3264205 | Msa0830210:CDS | 55.0% | |
| CTCTTCCGAGAACGGTGGAA+GGG | - | chr5_4:3264194-3264213 | None:intergenic | 55.0% | |
| TCTCTTCCGAGAACGGTGGA+AGG | - | chr5_4:3264195-3264214 | None:intergenic | 55.0% | |
| GGAGAGTGAAGCAAAGACGC+TGG | + | chr5_4:3264464-3264483 | Msa0830210:CDS | 55.0% | |
| ! | TCGTTGGAAGCGGGTTTAGG+AGG | + | chr5_4:3264786-3264805 | Msa0830210:CDS | 55.0% |
| ! | TTGGAAGCGGGTTTAGGAGG+AGG | + | chr5_4:3264789-3264808 | Msa0830210:CDS | 55.0% |
| TAGTGCTTGCACGTGTTCCG+CGG | - | chr5_4:3264896-3264915 | None:intergenic | 55.0% | |
| !! | ACCGAGCGGAGAGCACTTTA+TGG | + | chr5_4:3265495-3265514 | Msa0830210:intron | 55.0% |
| ACCGCGAGGAGAAGACTTGA+TGG | + | chr5_4:3265766-3265785 | Msa0830210:intron | 55.0% | |
| CATGTTGACCACGGCAACTC+TGG | + | chr5_4:3266095-3266114 | Msa0830210:CDS | 55.0% | |
| ACTTACCACCAGAGTTGCCG+TGG | - | chr5_4:3266106-3266125 | None:intergenic | 55.0% | |
| CAAGCGTTTGTGCTTGCACC+AGG | - | chr5_4:3266271-3266290 | None:intergenic | 55.0% | |
| GTGCAAGCACAAACGCTTGC+TGG | + | chr5_4:3266272-3266291 | Msa0830210:CDS | 55.0% | |
| ACGCCAACGGTAGCGATGAC+CGG | + | chr5_4:3263989-3264008 | Msa0830210:CDS | 60.0% | |
| CAACGGTAGCGATGACCGGT+GGG | + | chr5_4:3263993-3264012 | Msa0830210:CDS | 60.0% | |
| AACGGTAGCGATGACCGGTG+GGG | + | chr5_4:3263994-3264013 | Msa0830210:CDS | 60.0% | |
| CTTCCGAATTGCCGGTACGG+CGG | - | chr5_4:3264031-3264050 | None:intergenic | 60.0% | |
| ! | TGGCTGGTTGTTGACGGCAC+CGG | + | chr5_4:3264072-3264091 | Msa0830210:CDS | 60.0% |
| CGGCGAAGCACAGGTAATCG+AGG | + | chr5_4:3264092-3264111 | Msa0830210:CDS | 60.0% | |
| CACGCCATCATGCGTCGTAC+CGG | + | chr5_4:3264123-3264142 | Msa0830210:CDS | 60.0% | |
| TTCGAAGGTCACGTGCAGGG+AGG | - | chr5_4:3264149-3264168 | None:intergenic | 60.0% | |
| GGAGAGGGTCCAGGATTCGA+AGG | - | chr5_4:3264164-3264183 | None:intergenic | 60.0% | |
| GTGGAAGGGTAGGAGAGGAG+AGG | - | chr5_4:3264180-3264199 | None:intergenic | 60.0% | |
| GAACGGTGGAAGGGTAGGAG+AGG | - | chr5_4:3264185-3264204 | None:intergenic | 60.0% | |
| TCCGAGAACGGTGGAAGGGT+AGG | - | chr5_4:3264190-3264209 | None:intergenic | 60.0% | |
| ! | GAAGCGGGTTTAGGAGGAGG+AGG | + | chr5_4:3264792-3264811 | Msa0830210:CDS | 60.0% |
| GGGTTTAGGAGGAGGAGGAG+AGG | + | chr5_4:3264797-3264816 | Msa0830210:CDS | 60.0% | |
| !! | GACGAGTACCGACTACCGAG+CGG | + | chr5_4:3265481-3265500 | Msa0830210:intron | 60.0% |
| AGTGCTCTCCGCTCGGTAGT+CGG | - | chr5_4:3265492-3265511 | None:intergenic | 60.0% | |
| GTTGACCACGGCAACTCTGG+TGG | + | chr5_4:3266098-3266117 | Msa0830210:CDS | 60.0% | |
| CCACCGGTCATCGCTACCGT+TGG | - | chr5_4:3263995-3264014 | None:intergenic | 65.0% | |
| CCAACGGTAGCGATGACCGG+TGG | + | chr5_4:3263992-3264011 | Msa0830210:CDS | 65.0% | |
| GAGGCCGGTACGACGCATGA+TGG | - | chr5_4:3264130-3264149 | None:intergenic | 65.0% | |
| AAGGTCACGTGCAGGGAGGC+CGG | - | chr5_4:3264145-3264164 | None:intergenic | 65.0% | |
| GGTAGGAGAGGAGAGGGTCC+AGG | - | chr5_4:3264173-3264192 | None:intergenic | 65.0% | |
| AACAGCTGCCGCCGCCGTAC+CGG | + | chr5_4:3264017-3264036 | Msa0830210:CDS | 70.0% | |
| CCGAATTGCCGGTACGGCGG+CGG | - | chr5_4:3264028-3264047 | None:intergenic | 70.0% | |
| ! | CCGCCGCCGTACCGGCAATT+CGG | + | chr5_4:3264025-3264044 | Msa0830210:CDS | 70.0% |
| !! | TGACGGCACCGGCGAAGCAC+AGG | + | chr5_4:3264083-3264102 | Msa0830210:CDS | 70.0% |
| ACTGTTGGCGGCGGCACTGC+TGG | + | chr5_4:3266216-3266235 | Msa0830210:CDS | 70.0% | |
| CTGTTGGCGGCGGCACTGCT+GGG | + | chr5_4:3266217-3266236 | Msa0830210:CDS | 70.0% | |
| CGGCGGCAGCTGTTCCCCAC+CGG | - | chr5_4:3264011-3264030 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3263872 | 3266595 | 3263872 | ID=Msa0830210;Name=Msa0830210 |
| chr5_4 | mRNA | 3263872 | 3266595 | 3263872 | ID=Msa0830210-mRNA-1;Parent=Msa0830210;Name=Msa0830210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=95|1|1|1|1|1|2|296|445 |
| chr5_4 | exon | 3263872 | 3265016 | 3263872 | ID=Msa0830210-mRNA-1:exon:1138;Parent=Msa0830210-mRNA-1 |
| chr5_4 | exon | 3266012 | 3266595 | 3266012 | ID=Msa0830210-mRNA-1:exon:1139;Parent=Msa0830210-mRNA-1 |
| chr5_4 | five_prime_UTR | 3263872 | 3263966 | 3263872 | ID=Msa0830210-mRNA-1:five_prime_utr;Parent=Msa0830210-mRNA-1 |
| chr5_4 | CDS | 3263967 | 3265016 | 3263967 | ID=Msa0830210-mRNA-1:cds;Parent=Msa0830210-mRNA-1 |
| chr5_4 | CDS | 3266012 | 3266299 | 3266012 | ID=Msa0830210-mRNA-1:cds;Parent=Msa0830210-mRNA-1 |
| chr5_4 | three_prime_UTR | 3266300 | 3266595 | 3266300 | ID=Msa0830210-mRNA-1:three_prime_utr;Parent=Msa0830210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
