AlfalfaGEDB | Msa0716500

M. sativa cultivar zhongmu-4 / Msa0716500

KEGG: K00234
GO: GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009061 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0016999 GO:0017144 GO:0019637 GO:0019693 GO:0019752 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072350 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204
PFAM: PF00890.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716500	XP_003611986.1	99.681	627	1	1	1	627	1	626	0.0	1301

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716500	sp\|O82663\|SDHA1_ARATH	88.959	634	63	2	1	627	1	634	0.0	1159

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716500	G7KDJ3	99.681	627	1	1	1	627	1	626	0.0	1301

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017320	Msa0716500	0.804796	1.818469e-49	-8.615850e-47
Msa0058610	Msa0716500	0.810006	1.428742e-50	-8.615850e-47
Msa0074750	Msa0716500	0.800209	1.604849e-48	-8.615850e-47
Msa0092440	Msa0716500	0.806658	7.391041e-50	-8.615850e-47
Msa0144620	Msa0716500	0.823948	1.051847e-53	-8.615850e-47
Msa0171980	Msa0716500	0.824628	7.280930e-54	-8.615850e-47
Msa0189610	Msa0716500	0.822467	2.332398e-53	-8.615850e-47
Msa0194720	Msa0716500	0.820362	7.138456e-53	-8.615850e-47
Msa0232340	Msa0716500	0.801071	1.070247e-48	-8.615850e-47
Msa0236740	Msa0716500	0.828408	9.142179e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716500	MtrunA17_Chr5g0403941	99.681	627	1	1	1	627	1	626	0.0	1301
Msa0716500	MtrunA17_Chr6g0450691	33.622	577	311	18	43	589	122	656	9.01e-79	263

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716500	AT5G66760.1	88.959	634	63	2	1	627	1	634	0.0	1159
Msa0716500	AT2G18450.1	86.478	636	73	3	1	627	1	632	0.0	1125
Msa0716500	AT5G14760.1	33.116	613	340	16	5	587	47	619	1.64e-80	267

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Find 195 sgRNAs with CRISPR-Local

Find 621 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGATGCCGTTGTGGT+AGG	0.612406	5_1:+9955168	Msa0716500:CDS
AACAAAATAACACAAATATG+GGG	0.636493	5_1:+9963367	Msa0716500:three_prime_UTR
AACTAACCGTGAAGTCCTCA+CGG	0.544443	5_1:-9960606	None:intergenic
AAGCAGCTTGGAAACGATGC+AGG	0.464061	5_1:-9957700	None:intergenic
AAGCCTTTAGAGAAGGATGC+TGG	0.580540	5_1:+9960079	Msa0716500:CDS
AAGTGGATGAAACACACTTT+GGG	0.427082	5_1:+9960721	Msa0716500:CDS
AATACACACGAGCCTTAGGA+GGG	0.626806	5_1:-9962994	None:intergenic
AATCCAGGAACTAATGCATC+TGG	0.422975	5_1:-9959835	None:intergenic
AATGCCATGGCTGCCCGTGC+TGG	0.295116	5_1:+9957886	Msa0716500:CDS
AATTCTTAGGAATAGCGAGG+GGG	0.754649	5_1:+9958222	Msa0716500:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATTTATGTTGTGAGGGT+TGG	-	chr5_1:9954805-9954824	None:intergenic	30.0%
ATCATATTTATGATCCACGA+CGG	-	chr5_1:9955157-9955176	None:intergenic	30.0%
TTCAAAAGATCCTGCAAATA+GGG	-	chr5_1:9955553-9955572	None:intergenic	30.0%
ATTCAAAAGATCCTGCAAAT+AGG	-	chr5_1:9955554-9955573	None:intergenic	30.0%
AATGCGAGTTAAATGTAAAG+TGG	+	chr5_1:9955619-9955638	Msa0716500:intron	30.0%
TAAACAAAGATCCCATCTTA+CGG	+	chr5_1:9956096-9956115	Msa0716500:intron	30.0%
TGAATTGATAGGGATATTTG+GGG	-	chr5_1:9956326-9956345	None:intergenic	30.0%
CTGAATTGATAGGGATATTT+GGG	-	chr5_1:9956327-9956346	None:intergenic	30.0%
TCTGAATTGATAGGGATATT+TGG	-	chr5_1:9956328-9956347	None:intergenic	30.0%
CTTTGTGAGATATGAAGATA+AGG	+	chr5_1:9956418-9956437	Msa0716500:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	9954744	9963492	9954744	ID=Msa0716500;Name=Msa0716500
chr5_1	mRNA	9954744	9963492	9954744	ID=Msa0716500-mRNA-1;Parent=Msa0716500;Name=Msa0716500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=191\|1\|1\|1\|1\|1\|16\|474\|627
chr5_1	exon	9954744	9955030	9954744	ID=Msa0716500-mRNA-1:exon:3959;Parent=Msa0716500-mRNA-1
chr5_1	exon	9955141	9955299	9955141	ID=Msa0716500-mRNA-1:exon:3960;Parent=Msa0716500-mRNA-1
chr5_1	exon	9956649	9956736	9956649	ID=Msa0716500-mRNA-1:exon:3961;Parent=Msa0716500-mRNA-1
chr5_1	exon	9957092	9957238	9957092	ID=Msa0716500-mRNA-1:exon:3962;Parent=Msa0716500-mRNA-1
chr5_1	exon	9957325	9957465	9957325	ID=Msa0716500-mRNA-1:exon:3963;Parent=Msa0716500-mRNA-1
chr5_1	exon	9957657	9957742	9957657	ID=Msa0716500-mRNA-1:exon:3964;Parent=Msa0716500-mRNA-1
chr5_1	exon	9957829	9957921	9957829	ID=Msa0716500-mRNA-1:exon:3965;Parent=Msa0716500-mRNA-1
chr5_1	exon	9958020	9958083	9958020	ID=Msa0716500-mRNA-1:exon:3966;Parent=Msa0716500-mRNA-1
chr5_1	exon	9958203	9958346	9958203	ID=Msa0716500-mRNA-1:exon:3967;Parent=Msa0716500-mRNA-1
chr5_1	exon	9958897	9959084	9958897	ID=Msa0716500-mRNA-1:exon:3968;Parent=Msa0716500-mRNA-1
chr5_1	exon	9959811	9959985	9959811	ID=Msa0716500-mRNA-1:exon:3969;Parent=Msa0716500-mRNA-1
chr5_1	exon	9960068	9960238	9960068	ID=Msa0716500-mRNA-1:exon:3970;Parent=Msa0716500-mRNA-1
chr5_1	exon	9960334	9960403	9960334	ID=Msa0716500-mRNA-1:exon:3971;Parent=Msa0716500-mRNA-1
chr5_1	exon	9960501	9960621	9960501	ID=Msa0716500-mRNA-1:exon:3972;Parent=Msa0716500-mRNA-1
chr5_1	exon	9960706	9960743	9960706	ID=Msa0716500-mRNA-1:exon:3973;Parent=Msa0716500-mRNA-1
chr5_1	exon	9962916	9963492	9962916	ID=Msa0716500-mRNA-1:exon:3974;Parent=Msa0716500-mRNA-1
chr5_1	five_prime_UTR	9954744	9954934	9954744	ID=Msa0716500-mRNA-1:five_prime_utr;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9954935	9955030	9954935	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9955141	9955299	9955141	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9956649	9956736	9956649	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9957092	9957238	9957092	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9957325	9957465	9957325	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9957657	9957742	9957657	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9957829	9957921	9957829	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9958020	9958083	9958020	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9958203	9958346	9958203	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9958897	9959084	9958897	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9959811	9959985	9959811	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9960068	9960238	9960068	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9960334	9960403	9960334	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9960501	9960621	9960501	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9960706	9960743	9960706	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	CDS	9962916	9963018	9962916	ID=Msa0716500-mRNA-1:cds;Parent=Msa0716500-mRNA-1
chr5_1	three_prime_UTR	9963019	9963492	9963019	ID=Msa0716500-mRNA-1:three_prime_utr;Parent=Msa0716500-mRNA-1

Gene Sequence

>Msa0716500

ATGTGGCGTTGCGTCGCTCGTGGACTTCGCGTTCCACGTTCTTCTAACAGATCCTCCAATAACTCTCTCGGATCTCATCTTTCTAGATTCTTCTCCAGCGAGTCTTACACCGTCGTGGATCATAAATATGATGCCGTTGTGGTAGGTGCTGGTGGTGCTGGATTAAGAGCTGCTATTGGACTTTCTGAACATGGATTCAATACTGCTTGTATTACCAAGCTTTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGCATAAATGCTGCATTGGGAAATATGACTGAAGATGACTGGAGGTGGCACATGTACGACACTGTCAAAGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATATATGTGTAGGGAAGCACCAAAAGCGGTTATTGAACTAGAGAATTATGGATTGCCTTTTTCTCGAACAGAGGATGGAAGAATATATCAGCGTGCATTTGGTGGTCAGAGCTTAAACTTTGGAAAAGGTGGTCAAGCTTACCGTTGCGCATGCGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGCCAGGCTATGAGACACAATACACAGTTTTTTGTGGAATATTTTGCCTTAGATCTTATAATGAATAGTGATGGTAGTTGCCAAGGAGTGATTGCCTTAAACATGGAGGATGGAACCCTGCATCGTTTCCAAGCTGCTTCAACAATTTTGGCCACTGGGGGTTATGGTAGAGCGTACTTCTCAGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCCATGGCTGCCCGTGCTGGGATCGGACTTGAGGATTTAGAGTTTGTGCAATTTCACCCAACGGGTATATATGGAGCAGGTTGCCTTATAACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGCGAGGGGGAGCGGTTTATGGAACGATATGCTCCTACAGCAAAGGATCTTGCATCCCGAGATGTAGTTTCAAGATCGATGACTATGGAGATCCGGGAAGGACGTGGTGTAGGACCTGAGAAAGATCACATCTATCTACACTTGAATCATCTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGTATCTCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCAACTGTGCATTATAACATGGGTGGCATTCCCACAAATCATCATGGAGAGGTGGTTACCATTAAAGGAGACGATCCAGATGCATTAGTTCCTGGATTGATGGCTGCTGGGGAAGCAGCCTGTGCATCAGTTCATGGTGCCAACAGACTTGGTGCAAATTCACTTTTGGATATTGTTGTTTTCGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATTCATAAGCCAGGAGAGAAACAAAAGCCTTTAGAGAAGGATGCTGGCCAGAAAACGATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCTACTTCAAAAATTCGGTTGAATATGCAAAAAGTAATGCAAAATAATGCTGCTGTATTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGTTTCCATGATGTCAAGGTTGAAGACAGAAGTTTGATATGGAACTCCGACTTGATCGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCCTGCGTCACAATGCACTCTGCAGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAGGACTTCACGACAAGAGATGATGAGAAGTGGATGAAACACACTTTGGGATTCTGGGAGAACGAGAAGGTCCGATTGGATTACAGGCCTGTGCATTTGAATACATTGGATGATGAGGTTGAATCATTCCCTCCTAAGGCTCGTGTGTATTAA

Protein sequence

>Msa0716500

MWRCVARGLRVPRSSNRSSNNSLGSHLSRFFSSESYTVVDHKYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGRIYQRAFGGQSLNFGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLIMNSDGSCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMAARAGIGLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDALVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHKPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQKVMQNNAAVFRTQETLEEGCQLIDKTWESFHDVKVEDRSLIWNSDLIETIELENLLINACVTMHSAEARKESRGAHAREDFTTRDDEKWMKHTLGFWENEKVRLDYRPVHLNTLDDEVESFPPKARVY*