Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185090 | XP_003593683.1 | 92.593 | 81 | 5 | 1 | 1 | 80 | 1 | 81 | 1.88e-45 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185090 | G7IFI3 | 92.593 | 81 | 5 | 1 | 1 | 80 | 1 | 81 | 8.96e-46 | 152 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0185090 | Msa0215320 | 0.843025 | 1.805536e-58 | -8.615850e-47 |
| Msa0185090 | Msa0223410 | 0.808537 | 2.949486e-50 | -8.615850e-47 |
| Msa0185090 | Msa0302580 | 0.800881 | 1.170427e-48 | -8.615850e-47 |
| Msa0185090 | Msa0306210 | 0.801903 | 7.229933e-49 | -8.615850e-47 |
| Msa0185090 | Msa0340450 | -0.809685 | 1.674732e-50 | -8.615850e-47 |
| Msa0185090 | Msa0354800 | 0.808647 | 2.794773e-50 | -8.615850e-47 |
| Msa0185090 | Msa0466390 | -0.802568 | 5.275580e-49 | -8.615850e-47 |
| Msa0185090 | Msa0523940 | -0.801473 | 8.858163e-49 | -8.615850e-47 |
| Msa0185090 | Msa0524890 | 0.800042 | 1.734766e-48 | -8.615850e-47 |
| Msa0185090 | Msa0558690 | -0.802070 | 6.677526e-49 | -8.615850e-47 |
| Msa0185090 | Msa0574760 | 0.808191 | 3.496329e-50 | -8.615850e-47 |
| Msa0185090 | Msa0661190 | 0.806137 | 9.519922e-50 | -8.615850e-47 |
| Msa0185090 | Msa0679290 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0185090 | Msa0744170 | 0.814079 | 1.849292e-51 | -8.615850e-47 |
| Msa0185090 | Msa0757500 | 0.800953 | 1.131566e-48 | -8.615850e-47 |
| Msa0185090 | Msa0999960 | 0.827902 | 1.210696e-54 | -8.615850e-47 |
| Msa0185090 | Msa1073070 | 0.800838 | 1.194231e-48 | -8.615850e-47 |
| Msa0185090 | Msa1075220 | 0.827670 | 1.376373e-54 | -8.615850e-47 |
| Msa0185090 | Msa1116130 | 0.803866 | 2.841259e-49 | -8.615850e-47 |
| Msa0185090 | Msa1130270 | 0.802838 | 4.638632e-49 | -8.615850e-47 |
| Msa0185090 | Msa1139000 | 0.803814 | 2.912306e-49 | -8.615850e-47 |
| Msa0185090 | Msa1162550 | 0.823813 | 1.131450e-53 | -8.615850e-47 |
| Msa0185090 | Msa1186950 | 0.808807 | 2.583217e-50 | -8.615850e-47 |
| Msa0185090 | Msa1257800 | 0.812787 | 3.556595e-51 | -8.615850e-47 |
| Msa0185090 | Msa1451620 | 0.822742 | 2.013497e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185090 | MtrunA17_Chr2g0283121 | 92.593 | 81 | 5 | 1 | 1 | 80 | 1 | 81 | 1.73e-49 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0185090 | AT1G28540.1 | 71.154 | 52 | 15 | 0 | 31 | 82 | 31 | 82 | 3.16e-22 | 83.2 |
Find 32 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTGTGACCTGAAAATT+TGG | 0.269104 | 1_4:+75240734 | None:intergenic |
| CTCTTATGTGGCTTCATTCC+AGG | 0.288002 | 1_4:+75238783 | None:intergenic |
| TCAGGAATGGTTGTTTCTGC+TGG | 0.318675 | 1_4:+75240702 | None:intergenic |
| TGGGGTACTGCCATTCTTGC+TGG | 0.354338 | 1_4:-75240612 | Msa0185090:CDS |
| TACAATCAAGGCGAGCCTTC+AGG | 0.357048 | 1_4:+75238734 | None:intergenic |
| CTACCAGACAGTATGGTAAA+TGG | 0.367562 | 1_4:-75240647 | Msa0185090:CDS |
| GTACTGCAGGCGCCATTCCC+TGG | 0.390576 | 1_4:-75238801 | Msa0185090:intron |
| AGCCACATAAGAGCTGGTTT+TGG | 0.394890 | 1_4:-75238773 | Msa0185090:exon |
| TCTCTCAGAGTTGCGGAATC+AGG | 0.400210 | 1_4:+75240684 | None:intergenic |
| GGTGGTGCGTTCTTTGCTCT+TGG | 0.410696 | 1_4:-75240591 | Msa0185090:intron |
| TAAATGGTATTCTCACGCTT+GGG | 0.435213 | 1_4:-75240631 | Msa0185090:CDS |
| CAGGAATGGTTGTTTCTGCT+GGG | 0.473307 | 1_4:+75240703 | None:intergenic |
| AAATACGCTACCAGACAGTA+TGG | 0.482245 | 1_4:-75240654 | Msa0185090:CDS |
| GAACGCACCACCAGCAAGAA+TGG | 0.486835 | 1_4:+75240602 | None:intergenic |
| GTAAATGGTATTCTCACGCT+TGG | 0.498330 | 1_4:-75240632 | Msa0185090:CDS |
| TGTGGCTTCATTCCAGGGAA+TGG | 0.506590 | 1_4:+75238789 | None:intergenic |
| CCATTGATCTCTCAGAGTTG+CGG | 0.509739 | 1_4:+75240677 | None:intergenic |
| GAACCATGATCTGCACTTGA+AGG | 0.518442 | 1_4:+75240759 | None:intergenic |
| TCTTATGTGGCTTCATTCCA+GGG | 0.520311 | 1_4:+75238784 | None:intergenic |
| AACCAAAACCAGCTCTTATG+TGG | 0.534347 | 1_4:+75238771 | None:intergenic |
| CAACCTTCAAGTGCAGATCA+TGG | 0.541606 | 1_4:-75240762 | Msa0185090:CDS |
| ATACCATTTACCATACTGTC+TGG | 0.543102 | 1_4:+75240644 | None:intergenic |
| TGCACTTGAAGGTTGAGGAG+GGG | 0.546543 | 1_4:+75240770 | None:intergenic |
| CTGCACTTGAAGGTTGAGGA+GGG | 0.551323 | 1_4:+75240769 | None:intergenic |
| CCGCAACTCTGAGAGATCAA+TGG | 0.551813 | 1_4:-75240677 | Msa0185090:CDS |
| TGATCTGCACTTGAAGGTTG+AGG | 0.555096 | 1_4:+75240765 | None:intergenic |
| GAATGAAGCCACATAAGAGC+TGG | 0.568591 | 1_4:-75238779 | Msa0185090:exon |
| TTATGTTGACAGTGGCCTGA+AGG | 0.572551 | 1_4:-75238749 | Msa0185090:three_prime_UTR |
| CAGAGTTGCGGAATCAGGAA+TGG | 0.575924 | 1_4:+75240689 | None:intergenic |
| GGTACTGCCATTCTTGCTGG+TGG | 0.585012 | 1_4:-75240609 | Msa0185090:CDS |
| AAATGGTATTCTCACGCTTG+GGG | 0.618805 | 1_4:-75240630 | Msa0185090:CDS |
| TCTGCACTTGAAGGTTGAGG+AGG | 0.648513 | 1_4:+75240768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAACTTATTATGTTTT+GGG | - | chr1_4:75239723-75239742 | Msa0185090:intron | 10.0% |
| !!! | ATAAAAACTTATTATGTTTT+GGG | - | chr1_4:75239723-75239742 | Msa0185090:intron | 10.0% |
| !!! | TTTTATTATCTATTGTTGAT+AGG | - | chr1_4:75239405-75239424 | Msa0185090:intron | 15.0% |
| !! | TCTAATTCAATTATATAAGT+TGG | - | chr1_4:75239499-75239518 | Msa0185090:intron | 15.0% |
| !! | AATACTTTGTATGTAAAATA+GGG | - | chr1_4:75239534-75239553 | Msa0185090:intron | 15.0% |
| !!! | GATAAAAACTTATTATGTTT+TGG | - | chr1_4:75239722-75239741 | Msa0185090:intron | 15.0% |
| !!! | TCAGTTTTTTATATATATCA+TGG | - | chr1_4:75240228-75240247 | Msa0185090:intron | 15.0% |
| !!! | CAGTTTTTTATATATATCAT+GGG | - | chr1_4:75240229-75240248 | Msa0185090:intron | 15.0% |
| !! | AATGCTTCAAATTATAAATA+GGG | - | chr1_4:75240417-75240436 | Msa0185090:intron | 15.0% |
| !!! | TTTTATTATCTATTGTTGAT+AGG | - | chr1_4:75239405-75239424 | Msa0185090:intron | 15.0% |
| !! | TCTAATTCAATTATATAAGT+TGG | - | chr1_4:75239499-75239518 | Msa0185090:intron | 15.0% |
| !! | AATACTTTGTATGTAAAATA+GGG | - | chr1_4:75239534-75239553 | Msa0185090:intron | 15.0% |
| !!! | GATAAAAACTTATTATGTTT+TGG | - | chr1_4:75239722-75239741 | Msa0185090:intron | 15.0% |
| !!! | TCAGTTTTTTATATATATCA+TGG | - | chr1_4:75240228-75240247 | Msa0185090:intron | 15.0% |
| !!! | CAGTTTTTTATATATATCAT+GGG | - | chr1_4:75240229-75240248 | Msa0185090:intron | 15.0% |
| !! | AATGCTTCAAATTATAAATA+GGG | - | chr1_4:75240417-75240436 | Msa0185090:intron | 15.0% |
| !!! | ATTTTTGTTGTTGCATATTT+TGG | - | chr1_4:75239048-75239067 | Msa0185090:intron | 20.0% |
| !!! | TTTTTGTTGTTGCATATTTT+GGG | - | chr1_4:75239049-75239068 | Msa0185090:intron | 20.0% |
| !! | ATTATATACATGACTTGAAT+TGG | - | chr1_4:75239117-75239136 | Msa0185090:intron | 20.0% |
| !! | TTATATACATGACTTGAATT+GGG | - | chr1_4:75239118-75239137 | Msa0185090:intron | 20.0% |
| !!! | AGTTTGTATTTTGATATGTT+TGG | - | chr1_4:75239167-75239186 | Msa0185090:intron | 20.0% |
| !!! | GTTTGTATTTTGATATGTTT+GGG | - | chr1_4:75239168-75239187 | Msa0185090:intron | 20.0% |
| !! | ACAATAGATAATAAAACCAA+TGG | + | chr1_4:75239401-75239420 | None:intergenic | 20.0% |
| !!! | TTGATAGGTTTTTTTATGTT+TGG | - | chr1_4:75239420-75239439 | Msa0185090:intron | 20.0% |
| !! | GAATACTTTGTATGTAAAAT+AGG | - | chr1_4:75239533-75239552 | Msa0185090:intron | 20.0% |
| !! | AGGAAATTGAGAAAATTTAA+AGG | + | chr1_4:75239900-75239919 | None:intergenic | 20.0% |
| !! | TACTAAATAAATTTCTTTGC+TGG | - | chr1_4:75240087-75240106 | Msa0185090:intron | 20.0% |
| !! | ACTAAATAAATTTCTTTGCT+GGG | - | chr1_4:75240088-75240107 | Msa0185090:intron | 20.0% |
| !!! | TTTTAATCTCATATAACAAG+AGG | - | chr1_4:75240203-75240222 | Msa0185090:intron | 20.0% |
| !! | CAATGCTTCAAATTATAAAT+AGG | - | chr1_4:75240416-75240435 | Msa0185090:intron | 20.0% |
| !! | CAGTACATGAAAATAAATAA+AGG | + | chr1_4:75240621-75240640 | None:intergenic | 20.0% |
| !!! | AACTTAAACTTTTACAATCA+AGG | + | chr1_4:75240717-75240736 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTGTTGCATATTT+TGG | - | chr1_4:75239048-75239067 | Msa0185090:intron | 20.0% |
| !!! | TTTTTGTTGTTGCATATTTT+GGG | - | chr1_4:75239049-75239068 | Msa0185090:intron | 20.0% |
| !! | ATTATATACATGACTTGAAT+TGG | - | chr1_4:75239117-75239136 | Msa0185090:intron | 20.0% |
| !! | TTATATACATGACTTGAATT+GGG | - | chr1_4:75239118-75239137 | Msa0185090:intron | 20.0% |
| !!! | AGTTTGTATTTTGATATGTT+TGG | - | chr1_4:75239167-75239186 | Msa0185090:intron | 20.0% |
| !!! | GTTTGTATTTTGATATGTTT+GGG | - | chr1_4:75239168-75239187 | Msa0185090:intron | 20.0% |
| !! | ACAATAGATAATAAAACCAA+TGG | + | chr1_4:75239401-75239420 | None:intergenic | 20.0% |
| !!! | TTGATAGGTTTTTTTATGTT+TGG | - | chr1_4:75239420-75239439 | Msa0185090:intron | 20.0% |
| !! | GAATACTTTGTATGTAAAAT+AGG | - | chr1_4:75239533-75239552 | Msa0185090:intron | 20.0% |
| !! | AGGAAATTGAGAAAATTTAA+AGG | + | chr1_4:75239900-75239919 | None:intergenic | 20.0% |
| !! | TACTAAATAAATTTCTTTGC+TGG | - | chr1_4:75240087-75240106 | Msa0185090:intron | 20.0% |
| !! | ACTAAATAAATTTCTTTGCT+GGG | - | chr1_4:75240088-75240107 | Msa0185090:intron | 20.0% |
| !!! | TTTTAATCTCATATAACAAG+AGG | - | chr1_4:75240203-75240222 | Msa0185090:intron | 20.0% |
| !! | CAATGCTTCAAATTATAAAT+AGG | - | chr1_4:75240416-75240435 | Msa0185090:intron | 20.0% |
| !! | CAGTACATGAAAATAAATAA+AGG | + | chr1_4:75240621-75240640 | None:intergenic | 20.0% |
| !!! | AACTTAAACTTTTACAATCA+AGG | + | chr1_4:75240717-75240736 | None:intergenic | 20.0% |
| !! | AAACTTTATTTGGATTGAGT+AGG | + | chr1_4:75238953-75238972 | None:intergenic | 25.0% |
| ! | AGAAAGGTTGAAACTTTATT+TGG | + | chr1_4:75238963-75238982 | None:intergenic | 25.0% |
| !!! | TTTTGTTGTTGCATATTTTG+GGG | - | chr1_4:75239050-75239069 | Msa0185090:intron | 25.0% |
| ! | TTAAGCATGAAATTCTTCAA+GGG | + | chr1_4:75239673-75239692 | None:intergenic | 25.0% |
| ! | AGTTAGCAAAATAACAATCA+TGG | + | chr1_4:75239809-75239828 | None:intergenic | 25.0% |
| ! | TGAGAAAATTTAAAGGCAAT+GGG | + | chr1_4:75239893-75239912 | None:intergenic | 25.0% |
| ! | TTGAGAAAATTTAAAGGCAA+TGG | + | chr1_4:75239894-75239913 | None:intergenic | 25.0% |
| !! | TTTTTGCATACATGTAGTTT+TGG | - | chr1_4:75239929-75239948 | Msa0185090:intron | 25.0% |
| !! | TTTTGTAGTCACATTTTACA+AGG | - | chr1_4:75240052-75240071 | Msa0185090:intron | 25.0% |
| !! | TTACATGTCGTTTAAGTTAT+AGG | - | chr1_4:75240288-75240307 | Msa0185090:intron | 25.0% |
| !! | TACATGTCGTTTAAGTTATA+GGG | - | chr1_4:75240289-75240308 | Msa0185090:intron | 25.0% |
| !!! | TTATAGGGTTTTAGATAAAG+AGG | - | chr1_4:75240304-75240323 | Msa0185090:intron | 25.0% |
| !!! | TATAGGGTTTTAGATAAAGA+GGG | - | chr1_4:75240305-75240324 | Msa0185090:intron | 25.0% |
| ! | ATGCACTTTGAATTATGAAT+AGG | - | chr1_4:75240340-75240359 | Msa0185090:intron | 25.0% |
| ! | AAAAACTGATTGTTGAATTC+AGG | - | chr1_4:75240457-75240476 | Msa0185090:intron | 25.0% |
| !!! | TATTTATTTTCATGTACTGC+AGG | - | chr1_4:75240622-75240641 | Msa0185090:CDS | 25.0% |
| !! | AAACTTTATTTGGATTGAGT+AGG | + | chr1_4:75238953-75238972 | None:intergenic | 25.0% |
| ! | AGAAAGGTTGAAACTTTATT+TGG | + | chr1_4:75238963-75238982 | None:intergenic | 25.0% |
| !!! | TTTTGTTGTTGCATATTTTG+GGG | - | chr1_4:75239050-75239069 | Msa0185090:intron | 25.0% |
| ! | TTAAGCATGAAATTCTTCAA+GGG | + | chr1_4:75239673-75239692 | None:intergenic | 25.0% |
| ! | AGTTAGCAAAATAACAATCA+TGG | + | chr1_4:75239809-75239828 | None:intergenic | 25.0% |
| ! | TGAGAAAATTTAAAGGCAAT+GGG | + | chr1_4:75239893-75239912 | None:intergenic | 25.0% |
| ! | TTGAGAAAATTTAAAGGCAA+TGG | + | chr1_4:75239894-75239913 | None:intergenic | 25.0% |
| !! | TTTTTGCATACATGTAGTTT+TGG | - | chr1_4:75239929-75239948 | Msa0185090:intron | 25.0% |
| !! | TTTTGTAGTCACATTTTACA+AGG | - | chr1_4:75240052-75240071 | Msa0185090:intron | 25.0% |
| !! | TTACATGTCGTTTAAGTTAT+AGG | - | chr1_4:75240288-75240307 | Msa0185090:intron | 25.0% |
| !! | TACATGTCGTTTAAGTTATA+GGG | - | chr1_4:75240289-75240308 | Msa0185090:intron | 25.0% |
| !!! | TTATAGGGTTTTAGATAAAG+AGG | - | chr1_4:75240304-75240323 | Msa0185090:intron | 25.0% |
| !!! | TATAGGGTTTTAGATAAAGA+GGG | - | chr1_4:75240305-75240324 | Msa0185090:intron | 25.0% |
| ! | ATGCACTTTGAATTATGAAT+AGG | - | chr1_4:75240340-75240359 | Msa0185090:intron | 25.0% |
| ! | AAAAACTGATTGTTGAATTC+AGG | - | chr1_4:75240457-75240476 | Msa0185090:intron | 25.0% |
| !!! | TATTTATTTTCATGTACTGC+AGG | - | chr1_4:75240622-75240641 | Msa0185090:CDS | 25.0% |
| ! | TTAGGTTTGGAATTGAAAGA+GGG | + | chr1_4:75238899-75238918 | None:intergenic | 30.0% |
| ! | ATTAGGTTTGGAATTGAAAG+AGG | + | chr1_4:75238900-75238919 | None:intergenic | 30.0% |
| AGAAATTGAGATTGTGAAGT+AGG | - | chr1_4:75239257-75239276 | Msa0185090:intron | 30.0% | |
| AACAAGCTGAAGATGATAAA+TGG | - | chr1_4:75239305-75239324 | Msa0185090:intron | 30.0% | |
| TAAATGGTAGCAGAGAATAA+TGG | - | chr1_4:75239321-75239340 | Msa0185090:intron | 30.0% | |
| AGACAACAATAGTACATAAG+CGG | + | chr1_4:75239371-75239390 | None:intergenic | 30.0% | |
| GAAAATAGTGTCAAAGTCTA+TGG | + | chr1_4:75239570-75239589 | None:intergenic | 30.0% | |
| ! | TAGACTTTGACACTATTTTC+TGG | - | chr1_4:75239570-75239589 | Msa0185090:intron | 30.0% |
| CATAATGAAGTTATGATGAC+TGG | + | chr1_4:75239642-75239661 | None:intergenic | 30.0% | |
| CTTAAGCATGAAATTCTTCA+AGG | + | chr1_4:75239674-75239693 | None:intergenic | 30.0% | |
| AGAATTTCATGCTTAAGCTA+TGG | - | chr1_4:75239677-75239696 | Msa0185090:intron | 30.0% | |
| TGTATCATCGTTATTCCATT+TGG | - | chr1_4:75239828-75239847 | Msa0185090:intron | 30.0% | |
| ! | ATTTTCTCAATTTCCTGTCT+TGG | - | chr1_4:75239904-75239923 | Msa0185090:intron | 30.0% |
| ! | TTTTCTCAATTTCCTGTCTT+GGG | - | chr1_4:75239905-75239924 | Msa0185090:intron | 30.0% |
| ! | TCTTTCACACACAGTTATTT+TGG | - | chr1_4:75240002-75240021 | Msa0185090:intron | 30.0% |
| AAAACAAACAATAGCATCCT+AGG | + | chr1_4:75240116-75240135 | None:intergenic | 30.0% | |
| !! | TTTTGCTGTATTCGTATGTT+AGG | - | chr1_4:75240132-75240151 | Msa0185090:intron | 30.0% |
| !!! | ATAGGGTTTTAGATAAAGAG+GGG | - | chr1_4:75240306-75240325 | Msa0185090:intron | 30.0% |
| AAGCTTATTCACTATAGTTC+AGG | + | chr1_4:75240490-75240509 | None:intergenic | 30.0% | |
| AAGACAATGATACCTTAAGA+AGG | - | chr1_4:75240518-75240537 | Msa0185090:intron | 30.0% | |
| AGACAATGATACCTTAAGAA+GGG | - | chr1_4:75240519-75240538 | Msa0185090:intron | 30.0% | |
| TGAAAACAAACCAATTCTTC+AGG | + | chr1_4:75240553-75240572 | None:intergenic | 30.0% | |
| ! | TTAGGTTTGGAATTGAAAGA+GGG | + | chr1_4:75238899-75238918 | None:intergenic | 30.0% |
| ! | ATTAGGTTTGGAATTGAAAG+AGG | + | chr1_4:75238900-75238919 | None:intergenic | 30.0% |
| AGAAATTGAGATTGTGAAGT+AGG | - | chr1_4:75239257-75239276 | Msa0185090:intron | 30.0% | |
| AACAAGCTGAAGATGATAAA+TGG | - | chr1_4:75239305-75239324 | Msa0185090:intron | 30.0% | |
| TAAATGGTAGCAGAGAATAA+TGG | - | chr1_4:75239321-75239340 | Msa0185090:intron | 30.0% | |
| AGACAACAATAGTACATAAG+CGG | + | chr1_4:75239371-75239390 | None:intergenic | 30.0% | |
| GAAAATAGTGTCAAAGTCTA+TGG | + | chr1_4:75239570-75239589 | None:intergenic | 30.0% | |
| ! | TAGACTTTGACACTATTTTC+TGG | - | chr1_4:75239570-75239589 | Msa0185090:intron | 30.0% |
| CATAATGAAGTTATGATGAC+TGG | + | chr1_4:75239642-75239661 | None:intergenic | 30.0% | |
| CTTAAGCATGAAATTCTTCA+AGG | + | chr1_4:75239674-75239693 | None:intergenic | 30.0% | |
| AGAATTTCATGCTTAAGCTA+TGG | - | chr1_4:75239677-75239696 | Msa0185090:intron | 30.0% | |
| TGTATCATCGTTATTCCATT+TGG | - | chr1_4:75239828-75239847 | Msa0185090:intron | 30.0% | |
| ! | ATTTTCTCAATTTCCTGTCT+TGG | - | chr1_4:75239904-75239923 | Msa0185090:intron | 30.0% |
| ! | TTTTCTCAATTTCCTGTCTT+GGG | - | chr1_4:75239905-75239924 | Msa0185090:intron | 30.0% |
| ! | TCTTTCACACACAGTTATTT+TGG | - | chr1_4:75240002-75240021 | Msa0185090:intron | 30.0% |
| AAAACAAACAATAGCATCCT+AGG | + | chr1_4:75240116-75240135 | None:intergenic | 30.0% | |
| !! | TTTTGCTGTATTCGTATGTT+AGG | - | chr1_4:75240132-75240151 | Msa0185090:intron | 30.0% |
| !!! | ATAGGGTTTTAGATAAAGAG+GGG | - | chr1_4:75240306-75240325 | Msa0185090:intron | 30.0% |
| AAGCTTATTCACTATAGTTC+AGG | + | chr1_4:75240490-75240509 | None:intergenic | 30.0% | |
| AAGACAATGATACCTTAAGA+AGG | - | chr1_4:75240518-75240537 | Msa0185090:intron | 30.0% | |
| AGACAATGATACCTTAAGAA+GGG | - | chr1_4:75240519-75240538 | Msa0185090:intron | 30.0% | |
| TGAAAACAAACCAATTCTTC+AGG | + | chr1_4:75240553-75240572 | None:intergenic | 30.0% | |
| ! | CATGGTTCAACCAAATTTTC+AGG | - | chr1_4:75238692-75238711 | Msa0185090:three_prime_UTR | 35.0% |
| ! | AGCTTTGTGACCTGAAAATT+TGG | + | chr1_4:75238705-75238724 | None:intergenic | 35.0% |
| ATACCATTTACCATACTGTC+TGG | + | chr1_4:75238795-75238814 | None:intergenic | 35.0% | |
| TAAATGGTATTCTCACGCTT+GGG | - | chr1_4:75238805-75238824 | Msa0185090:intron | 35.0% | |
| TTGGAATTGAAAGAGGGAAT+TGG | + | chr1_4:75238893-75238912 | None:intergenic | 35.0% | |
| ATCATGAGAGGAATTAGGTT+TGG | + | chr1_4:75238912-75238931 | None:intergenic | 35.0% | |
| ATGAAACTGACCCAAAAGAA+GGG | + | chr1_4:75239011-75239030 | None:intergenic | 35.0% | |
| AATGAAACTGACCCAAAAGA+AGG | + | chr1_4:75239012-75239031 | None:intergenic | 35.0% | |
| ! | ATGACTTGAATTGGGTTGTT+GGG | - | chr1_4:75239126-75239145 | Msa0185090:intron | 35.0% |
| TTGTGAAGTAGGTTGTTTGT+TGG | - | chr1_4:75239268-75239287 | Msa0185090:intron | 35.0% | |
| TAGTACATAAGCGGGAATAA+TGG | + | chr1_4:75239362-75239381 | None:intergenic | 35.0% | |
| GACAACAATAGTACATAAGC+GGG | + | chr1_4:75239370-75239389 | None:intergenic | 35.0% | |
| GTGAGTTATGTACACTTATG+TGG | - | chr1_4:75239460-75239479 | Msa0185090:intron | 35.0% | |
| AATAGTGTCAAAGTCTATGG+CGG | + | chr1_4:75239567-75239586 | None:intergenic | 35.0% | |
| TGCATCAATCCATAAACCAT+AGG | + | chr1_4:75239619-75239638 | None:intergenic | 35.0% | |
| TTTCATGCTTAAGCTATGGT+TGG | - | chr1_4:75239681-75239700 | Msa0185090:intron | 35.0% | |
| ATAACAATCATGGCTATGCT+GGG | + | chr1_4:75239799-75239818 | None:intergenic | 35.0% | |
| AATAACAATCATGGCTATGC+TGG | + | chr1_4:75239800-75239819 | None:intergenic | 35.0% | |
| ! | CATTTAGTTAAGGCACCAAA+TGG | + | chr1_4:75239846-75239865 | None:intergenic | 35.0% |
| ACTACACAGGCATTTAGTTA+AGG | + | chr1_4:75239856-75239875 | None:intergenic | 35.0% | |
| AAACACATAGCATACTACAC+AGG | + | chr1_4:75239869-75239888 | None:intergenic | 35.0% | |
| !! | TTGGTTCTTTCCTTTTCTTG+TGG | - | chr1_4:75239948-75239967 | Msa0185090:intron | 35.0% |
| CCTTCTTATACCACAAGAAA+AGG | + | chr1_4:75239961-75239980 | None:intergenic | 35.0% | |
| ! | CCTTTTCTTGTGGTATAAGA+AGG | - | chr1_4:75239958-75239977 | Msa0185090:intron | 35.0% |
| TGTGTGTGAAAGACTAAACT+TGG | + | chr1_4:75239995-75240014 | None:intergenic | 35.0% | |
| ATTCGTATGTTAGGTGGAAT+TGG | - | chr1_4:75240141-75240160 | Msa0185090:intron | 35.0% | |
| ! | GGTGGAATTGGAACATTTTT+AGG | - | chr1_4:75240153-75240172 | Msa0185090:intron | 35.0% |
| GACAATGATACCTTAAGAAG+GGG | - | chr1_4:75240520-75240539 | Msa0185090:intron | 35.0% | |
| !!! | GTTTTGGTTTATGTTGACAG+TGG | - | chr1_4:75240679-75240698 | Msa0185090:CDS | 35.0% |
| ! | CATGGTTCAACCAAATTTTC+AGG | - | chr1_4:75238692-75238711 | Msa0185090:three_prime_UTR | 35.0% |
| ! | AGCTTTGTGACCTGAAAATT+TGG | + | chr1_4:75238705-75238724 | None:intergenic | 35.0% |
| ATACCATTTACCATACTGTC+TGG | + | chr1_4:75238795-75238814 | None:intergenic | 35.0% | |
| TAAATGGTATTCTCACGCTT+GGG | - | chr1_4:75238805-75238824 | Msa0185090:intron | 35.0% | |
| TTGGAATTGAAAGAGGGAAT+TGG | + | chr1_4:75238893-75238912 | None:intergenic | 35.0% | |
| ATCATGAGAGGAATTAGGTT+TGG | + | chr1_4:75238912-75238931 | None:intergenic | 35.0% | |
| ATGAAACTGACCCAAAAGAA+GGG | + | chr1_4:75239011-75239030 | None:intergenic | 35.0% | |
| AATGAAACTGACCCAAAAGA+AGG | + | chr1_4:75239012-75239031 | None:intergenic | 35.0% | |
| ! | ATGACTTGAATTGGGTTGTT+GGG | - | chr1_4:75239126-75239145 | Msa0185090:intron | 35.0% |
| TTGTGAAGTAGGTTGTTTGT+TGG | - | chr1_4:75239268-75239287 | Msa0185090:intron | 35.0% | |
| TAGTACATAAGCGGGAATAA+TGG | + | chr1_4:75239362-75239381 | None:intergenic | 35.0% | |
| GACAACAATAGTACATAAGC+GGG | + | chr1_4:75239370-75239389 | None:intergenic | 35.0% | |
| GTGAGTTATGTACACTTATG+TGG | - | chr1_4:75239460-75239479 | Msa0185090:intron | 35.0% | |
| AATAGTGTCAAAGTCTATGG+CGG | + | chr1_4:75239567-75239586 | None:intergenic | 35.0% | |
| TGCATCAATCCATAAACCAT+AGG | + | chr1_4:75239619-75239638 | None:intergenic | 35.0% | |
| TTTCATGCTTAAGCTATGGT+TGG | - | chr1_4:75239681-75239700 | Msa0185090:intron | 35.0% | |
| ATAACAATCATGGCTATGCT+GGG | + | chr1_4:75239799-75239818 | None:intergenic | 35.0% | |
| AATAACAATCATGGCTATGC+TGG | + | chr1_4:75239800-75239819 | None:intergenic | 35.0% | |
| ! | CATTTAGTTAAGGCACCAAA+TGG | + | chr1_4:75239846-75239865 | None:intergenic | 35.0% |
| ACTACACAGGCATTTAGTTA+AGG | + | chr1_4:75239856-75239875 | None:intergenic | 35.0% | |
| AAACACATAGCATACTACAC+AGG | + | chr1_4:75239869-75239888 | None:intergenic | 35.0% | |
| !! | TTGGTTCTTTCCTTTTCTTG+TGG | - | chr1_4:75239948-75239967 | Msa0185090:intron | 35.0% |
| CCTTCTTATACCACAAGAAA+AGG | + | chr1_4:75239961-75239980 | None:intergenic | 35.0% | |
| ! | CCTTTTCTTGTGGTATAAGA+AGG | - | chr1_4:75239958-75239977 | Msa0185090:intron | 35.0% |
| TGTGTGTGAAAGACTAAACT+TGG | + | chr1_4:75239995-75240014 | None:intergenic | 35.0% | |
| ATTCGTATGTTAGGTGGAAT+TGG | - | chr1_4:75240141-75240160 | Msa0185090:intron | 35.0% | |
| ! | GGTGGAATTGGAACATTTTT+AGG | - | chr1_4:75240153-75240172 | Msa0185090:intron | 35.0% |
| GACAATGATACCTTAAGAAG+GGG | - | chr1_4:75240520-75240539 | Msa0185090:intron | 35.0% | |
| !!! | GTTTTGGTTTATGTTGACAG+TGG | - | chr1_4:75240679-75240698 | Msa0185090:CDS | 35.0% |
| !!! | GAGGAGGGGTTTTAGTTTTA+GGG | + | chr1_4:75238655-75238674 | None:intergenic | 40.0% |
| !!! | TGAGGAGGGGTTTTAGTTTT+AGG | + | chr1_4:75238656-75238675 | None:intergenic | 40.0% |
| AAATACGCTACCAGACAGTA+TGG | - | chr1_4:75238782-75238801 | Msa0185090:exon | 40.0% | |
| CTACCAGACAGTATGGTAAA+TGG | - | chr1_4:75238789-75238808 | Msa0185090:CDS | 40.0% | |
| GTAAATGGTATTCTCACGCT+TGG | - | chr1_4:75238804-75238823 | Msa0185090:intron | 40.0% | |
| AAATGGTATTCTCACGCTTG+GGG | - | chr1_4:75238806-75238825 | Msa0185090:intron | 40.0% | |
| TCAGCATCATGAGAGGAATT+AGG | + | chr1_4:75238917-75238936 | None:intergenic | 40.0% | |
| ! | CTTGTTATCAGCATCATGAG+AGG | + | chr1_4:75238924-75238943 | None:intergenic | 40.0% |
| CTCTCATGATGCTGATAACA+AGG | - | chr1_4:75238922-75238941 | Msa0185090:intron | 40.0% | |
| GCAGGAAGAGAAAAGTAGAA+AGG | + | chr1_4:75238979-75238998 | None:intergenic | 40.0% | |
| ! | CTGCTTCATTCCCTTCTTTT+GGG | - | chr1_4:75238998-75239017 | Msa0185090:intron | 40.0% |
| ! | CATGACTTGAATTGGGTTGT+TGG | - | chr1_4:75239125-75239144 | Msa0185090:intron | 40.0% |
| TTGTTGTCTGCTTCTTCCAT+TGG | - | chr1_4:75239382-75239401 | Msa0185090:intron | 40.0% | |
| ! | TATGTTTGGAACTCCTCACA+TGG | - | chr1_4:75239434-75239453 | Msa0185090:intron | 40.0% |
| ! | ATGTTTGGAACTCCTCACAT+GGG | - | chr1_4:75239435-75239454 | Msa0185090:intron | 40.0% |
| ATAGTGTCAAAGTCTATGGC+GGG | + | chr1_4:75239566-75239585 | None:intergenic | 40.0% | |
| ACTGAATACACAGTGACCTA+TGG | - | chr1_4:75239600-75239619 | Msa0185090:intron | 40.0% | |
| ACACAGTGACCTATGGTTTA+TGG | - | chr1_4:75239607-75239626 | Msa0185090:intron | 40.0% | |
| ATGCTTAAGCTATGGTTGGT+TGG | - | chr1_4:75239685-75239704 | Msa0185090:intron | 40.0% | |
| ! | ATGGTTGGTTGGAAACTAAG+TGG | - | chr1_4:75239696-75239715 | Msa0185090:intron | 40.0% |
| ! | TGGTTGGTTGGAAACTAAGT+GGG | - | chr1_4:75239697-75239716 | Msa0185090:intron | 40.0% |
| GTGGAATGGATAGAATGGAA+TGG | + | chr1_4:75239771-75239790 | None:intergenic | 40.0% | |
| GTATGCAAAAAACCCAAGAC+AGG | + | chr1_4:75239920-75239939 | None:intergenic | 40.0% | |
| TGCTGTATTCGTATGTTAGG+TGG | - | chr1_4:75240135-75240154 | Msa0185090:intron | 40.0% | |
| ! | AGGTGATTTTCCCCTTCTTA+AGG | + | chr1_4:75240533-75240552 | None:intergenic | 40.0% |
| GGGAAAATCACCTGAAGAAT+TGG | - | chr1_4:75240540-75240559 | Msa0185090:intron | 40.0% | |
| TCTTATGTGGCTTCATTCCA+GGG | + | chr1_4:75240655-75240674 | None:intergenic | 40.0% | |
| AACCAAAACCAGCTCTTATG+TGG | + | chr1_4:75240668-75240687 | None:intergenic | 40.0% | |
| !!! | GAGGAGGGGTTTTAGTTTTA+GGG | + | chr1_4:75238655-75238674 | None:intergenic | 40.0% |
| !!! | TGAGGAGGGGTTTTAGTTTT+AGG | + | chr1_4:75238656-75238675 | None:intergenic | 40.0% |
| AAATACGCTACCAGACAGTA+TGG | - | chr1_4:75238782-75238801 | Msa0185090:exon | 40.0% | |
| CTACCAGACAGTATGGTAAA+TGG | - | chr1_4:75238789-75238808 | Msa0185090:CDS | 40.0% | |
| GTAAATGGTATTCTCACGCT+TGG | - | chr1_4:75238804-75238823 | Msa0185090:intron | 40.0% | |
| AAATGGTATTCTCACGCTTG+GGG | - | chr1_4:75238806-75238825 | Msa0185090:intron | 40.0% | |
| TCAGCATCATGAGAGGAATT+AGG | + | chr1_4:75238917-75238936 | None:intergenic | 40.0% | |
| ! | CTTGTTATCAGCATCATGAG+AGG | + | chr1_4:75238924-75238943 | None:intergenic | 40.0% |
| CTCTCATGATGCTGATAACA+AGG | - | chr1_4:75238922-75238941 | Msa0185090:intron | 40.0% | |
| GCAGGAAGAGAAAAGTAGAA+AGG | + | chr1_4:75238979-75238998 | None:intergenic | 40.0% | |
| ! | CTGCTTCATTCCCTTCTTTT+GGG | - | chr1_4:75238998-75239017 | Msa0185090:intron | 40.0% |
| ! | CATGACTTGAATTGGGTTGT+TGG | - | chr1_4:75239125-75239144 | Msa0185090:intron | 40.0% |
| TTGTTGTCTGCTTCTTCCAT+TGG | - | chr1_4:75239382-75239401 | Msa0185090:intron | 40.0% | |
| ! | TATGTTTGGAACTCCTCACA+TGG | - | chr1_4:75239434-75239453 | Msa0185090:intron | 40.0% |
| ! | ATGTTTGGAACTCCTCACAT+GGG | - | chr1_4:75239435-75239454 | Msa0185090:intron | 40.0% |
| ATAGTGTCAAAGTCTATGGC+GGG | + | chr1_4:75239566-75239585 | None:intergenic | 40.0% | |
| ACTGAATACACAGTGACCTA+TGG | - | chr1_4:75239600-75239619 | Msa0185090:intron | 40.0% | |
| ACACAGTGACCTATGGTTTA+TGG | - | chr1_4:75239607-75239626 | Msa0185090:intron | 40.0% | |
| ATGCTTAAGCTATGGTTGGT+TGG | - | chr1_4:75239685-75239704 | Msa0185090:intron | 40.0% | |
| ! | ATGGTTGGTTGGAAACTAAG+TGG | - | chr1_4:75239696-75239715 | Msa0185090:intron | 40.0% |
| ! | TGGTTGGTTGGAAACTAAGT+GGG | - | chr1_4:75239697-75239716 | Msa0185090:intron | 40.0% |
| GTGGAATGGATAGAATGGAA+TGG | + | chr1_4:75239771-75239790 | None:intergenic | 40.0% | |
| GTATGCAAAAAACCCAAGAC+AGG | + | chr1_4:75239920-75239939 | None:intergenic | 40.0% | |
| TGCTGTATTCGTATGTTAGG+TGG | - | chr1_4:75240135-75240154 | Msa0185090:intron | 40.0% | |
| ! | AGGTGATTTTCCCCTTCTTA+AGG | + | chr1_4:75240533-75240552 | None:intergenic | 40.0% |
| GGGAAAATCACCTGAAGAAT+TGG | - | chr1_4:75240540-75240559 | Msa0185090:intron | 40.0% | |
| TCTTATGTGGCTTCATTCCA+GGG | + | chr1_4:75240655-75240674 | None:intergenic | 40.0% | |
| AACCAAAACCAGCTCTTATG+TGG | + | chr1_4:75240668-75240687 | None:intergenic | 40.0% | |
| TGATCTGCACTTGAAGGTTG+AGG | + | chr1_4:75238674-75238693 | None:intergenic | 45.0% | |
| CAACCTTCAAGTGCAGATCA+TGG | - | chr1_4:75238674-75238693 | Msa0185090:three_prime_UTR | 45.0% | |
| GAACCATGATCTGCACTTGA+AGG | + | chr1_4:75238680-75238699 | None:intergenic | 45.0% | |
| !! | CAGGAATGGTTGTTTCTGCT+GGG | + | chr1_4:75238736-75238755 | None:intergenic | 45.0% |
| !! | TCAGGAATGGTTGTTTCTGC+TGG | + | chr1_4:75238737-75238756 | None:intergenic | 45.0% |
| CCATTGATCTCTCAGAGTTG+CGG | + | chr1_4:75238762-75238781 | None:intergenic | 45.0% | |
| ! | TGCTCTTGGTTGGTTCATCA+AGG | - | chr1_4:75238859-75238878 | Msa0185090:intron | 45.0% |
| ! | GCTCTTGGTTGGTTCATCAA+GGG | - | chr1_4:75238860-75238879 | Msa0185090:intron | 45.0% |
| AAAGAAGGGAATGAAGCAGC+AGG | + | chr1_4:75238997-75239016 | None:intergenic | 45.0% | |
| ! | GCTGCTTCATTCCCTTCTTT+TGG | - | chr1_4:75238997-75239016 | Msa0185090:intron | 45.0% |
| CATAACTCACAACCCATGTG+AGG | + | chr1_4:75239450-75239469 | None:intergenic | 45.0% | |
| CTGGAGTGGAATGGATAGAA+TGG | + | chr1_4:75239776-75239795 | None:intergenic | 45.0% | |
| AATTTCTTTGCTGGGAGCCT+AGG | - | chr1_4:75240096-75240115 | Msa0185090:intron | 45.0% | |
| CTCTTATGTGGCTTCATTCC+AGG | + | chr1_4:75240656-75240675 | None:intergenic | 45.0% | |
| GAATGAAGCCACATAAGAGC+TGG | - | chr1_4:75240657-75240676 | Msa0185090:CDS | 45.0% | |
| !! | AGCCACATAAGAGCTGGTTT+TGG | - | chr1_4:75240663-75240682 | Msa0185090:CDS | 45.0% |
| TTATGTTGACAGTGGCCTGA+AGG | - | chr1_4:75240687-75240706 | Msa0185090:CDS | 45.0% | |
| TGATCTGCACTTGAAGGTTG+AGG | + | chr1_4:75238674-75238693 | None:intergenic | 45.0% | |
| CAACCTTCAAGTGCAGATCA+TGG | - | chr1_4:75238674-75238693 | Msa0185090:three_prime_UTR | 45.0% | |
| GAACCATGATCTGCACTTGA+AGG | + | chr1_4:75238680-75238699 | None:intergenic | 45.0% | |
| !! | CAGGAATGGTTGTTTCTGCT+GGG | + | chr1_4:75238736-75238755 | None:intergenic | 45.0% |
| !! | TCAGGAATGGTTGTTTCTGC+TGG | + | chr1_4:75238737-75238756 | None:intergenic | 45.0% |
| CCATTGATCTCTCAGAGTTG+CGG | + | chr1_4:75238762-75238781 | None:intergenic | 45.0% | |
| ! | TGCTCTTGGTTGGTTCATCA+AGG | - | chr1_4:75238859-75238878 | Msa0185090:intron | 45.0% |
| ! | GCTCTTGGTTGGTTCATCAA+GGG | - | chr1_4:75238860-75238879 | Msa0185090:intron | 45.0% |
| AAAGAAGGGAATGAAGCAGC+AGG | + | chr1_4:75238997-75239016 | None:intergenic | 45.0% | |
| ! | GCTGCTTCATTCCCTTCTTT+TGG | - | chr1_4:75238997-75239016 | Msa0185090:intron | 45.0% |
| CATAACTCACAACCCATGTG+AGG | + | chr1_4:75239450-75239469 | None:intergenic | 45.0% | |
| CTGGAGTGGAATGGATAGAA+TGG | + | chr1_4:75239776-75239795 | None:intergenic | 45.0% | |
| AATTTCTTTGCTGGGAGCCT+AGG | - | chr1_4:75240096-75240115 | Msa0185090:intron | 45.0% | |
| CTCTTATGTGGCTTCATTCC+AGG | + | chr1_4:75240656-75240675 | None:intergenic | 45.0% | |
| GAATGAAGCCACATAAGAGC+TGG | - | chr1_4:75240657-75240676 | Msa0185090:CDS | 45.0% | |
| !! | AGCCACATAAGAGCTGGTTT+TGG | - | chr1_4:75240663-75240682 | Msa0185090:CDS | 45.0% |
| TTATGTTGACAGTGGCCTGA+AGG | - | chr1_4:75240687-75240706 | Msa0185090:CDS | 45.0% | |
| TGCACTTGAAGGTTGAGGAG+GGG | + | chr1_4:75238669-75238688 | None:intergenic | 50.0% | |
| CTGCACTTGAAGGTTGAGGA+GGG | + | chr1_4:75238670-75238689 | None:intergenic | 50.0% | |
| TCTGCACTTGAAGGTTGAGG+AGG | + | chr1_4:75238671-75238690 | None:intergenic | 50.0% | |
| CAGAGTTGCGGAATCAGGAA+TGG | + | chr1_4:75238750-75238769 | None:intergenic | 50.0% | |
| TCTCTCAGAGTTGCGGAATC+AGG | + | chr1_4:75238755-75238774 | None:intergenic | 50.0% | |
| ! | CCGCAACTCTGAGAGATCAA+TGG | - | chr1_4:75238759-75238778 | Msa0185090:three_prime_UTR | 50.0% |
| GTGCGTTCTTTGCTCTTGGT+TGG | - | chr1_4:75238849-75238868 | Msa0185090:intron | 50.0% | |
| TGTGGCTTCATTCCAGGGAA+TGG | + | chr1_4:75240650-75240669 | None:intergenic | 50.0% | |
| TACAATCAAGGCGAGCCTTC+AGG | + | chr1_4:75240705-75240724 | None:intergenic | 50.0% | |
| TGCACTTGAAGGTTGAGGAG+GGG | + | chr1_4:75238669-75238688 | None:intergenic | 50.0% | |
| CTGCACTTGAAGGTTGAGGA+GGG | + | chr1_4:75238670-75238689 | None:intergenic | 50.0% | |
| TCTGCACTTGAAGGTTGAGG+AGG | + | chr1_4:75238671-75238690 | None:intergenic | 50.0% | |
| CAGAGTTGCGGAATCAGGAA+TGG | + | chr1_4:75238750-75238769 | None:intergenic | 50.0% | |
| TCTCTCAGAGTTGCGGAATC+AGG | + | chr1_4:75238755-75238774 | None:intergenic | 50.0% | |
| ! | CCGCAACTCTGAGAGATCAA+TGG | - | chr1_4:75238759-75238778 | Msa0185090:three_prime_UTR | 50.0% |
| GTGCGTTCTTTGCTCTTGGT+TGG | - | chr1_4:75238849-75238868 | Msa0185090:intron | 50.0% | |
| TGTGGCTTCATTCCAGGGAA+TGG | + | chr1_4:75240650-75240669 | None:intergenic | 50.0% | |
| TACAATCAAGGCGAGCCTTC+AGG | + | chr1_4:75240705-75240724 | None:intergenic | 50.0% | |
| !! | TGGGGTACTGCCATTCTTGC+TGG | - | chr1_4:75238824-75238843 | Msa0185090:intron | 55.0% |
| GGTACTGCCATTCTTGCTGG+TGG | - | chr1_4:75238827-75238846 | Msa0185090:intron | 55.0% | |
| GAACGCACCACCAGCAAGAA+TGG | + | chr1_4:75238837-75238856 | None:intergenic | 55.0% | |
| GGTGGTGCGTTCTTTGCTCT+TGG | - | chr1_4:75238845-75238864 | Msa0185090:intron | 55.0% | |
| ! | GTGTCAAAGTCTATGGCGGG+AGG | + | chr1_4:75239563-75239582 | None:intergenic | 55.0% |
| ! | TATGCTGGGCTGGAGTGGAA+TGG | + | chr1_4:75239785-75239804 | None:intergenic | 55.0% |
| CAATCATGGCTATGCTGGGC+TGG | + | chr1_4:75239795-75239814 | None:intergenic | 55.0% | |
| !! | TGGGGTACTGCCATTCTTGC+TGG | - | chr1_4:75238824-75238843 | Msa0185090:intron | 55.0% |
| GGTACTGCCATTCTTGCTGG+TGG | - | chr1_4:75238827-75238846 | Msa0185090:intron | 55.0% | |
| GAACGCACCACCAGCAAGAA+TGG | + | chr1_4:75238837-75238856 | None:intergenic | 55.0% | |
| GGTGGTGCGTTCTTTGCTCT+TGG | - | chr1_4:75238845-75238864 | Msa0185090:intron | 55.0% | |
| ! | GTGTCAAAGTCTATGGCGGG+AGG | + | chr1_4:75239563-75239582 | None:intergenic | 55.0% |
| ! | TATGCTGGGCTGGAGTGGAA+TGG | + | chr1_4:75239785-75239804 | None:intergenic | 55.0% |
| CAATCATGGCTATGCTGGGC+TGG | + | chr1_4:75239795-75239814 | None:intergenic | 55.0% | |
| ! | ATGGCTATGCTGGGCTGGAG+TGG | + | chr1_4:75239790-75239809 | None:intergenic | 60.0% |
| ! | ATGGCTATGCTGGGCTGGAG+TGG | + | chr1_4:75239790-75239809 | None:intergenic | 60.0% |
| GTACTGCAGGCGCCATTCCC+TGG | - | chr1_4:75240635-75240654 | Msa0185090:CDS | 65.0% | |
| GTACTGCAGGCGCCATTCCC+TGG | - | chr1_4:75240635-75240654 | Msa0185090:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 75238629 | 75240829 | 75238629 | ID=Msa0185090;Name=Msa0185090 |
| chr1_4 | mRNA | 75238629 | 75240829 | 75238629 | ID=Msa0185090-mRNA-1;Parent=Msa0185090;Name=Msa0185090-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0.5|1|0|0|2|157|88 |
| chr1_4 | exon | 75238629 | 75238814 | 75238629 | ID=Msa0185090-mRNA-1:exon:25615;Parent=Msa0185090-mRNA-1 |
| chr1_4 | exon | 75240592 | 75240829 | 75240592 | ID=Msa0185090-mRNA-1:exon:25614;Parent=Msa0185090-mRNA-1 |
| chr1_4 | CDS | 75240592 | 75240829 | 75240592 | ID=Msa0185090-mRNA-1:cds;Parent=Msa0185090-mRNA-1 |
| chr1_4 | CDS | 75238786 | 75238814 | 75238786 | ID=Msa0185090-mRNA-1:cds;Parent=Msa0185090-mRNA-1 |
| chr1_4 | three_prime_UTR | 75238629 | 75238785 | 75238629 | ID=Msa0185090-mRNA-1:three_prime_utr;Parent=Msa0185090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
