AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1130270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130270 MtrunA17_Chr7g0275421 98.649 148 2 0 27 174 12 159 1.29e-109 309
Msa1130270 MtrunA17_Chr3g0090311 35.762 151 96 1 1 150 1 151 2.68e-28 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1130270 AT1G03150.1 92.529 174 13 0 1 174 1 174 1.75e-124 347
Msa1130270 AT5G13780.1 36.424 151 95 1 1 150 1 151 1.29e-27 102

Find 63 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCAATATATTTGCTTTA+AGG 0.097026 7_3:+82378635 None:intergenic
GAGAAGATTCATTAGTTTCT+TGG 0.211108 7_3:+82380807 None:intergenic
CGAGTGCTACGCTATTATTC+TGG 0.267608 7_3:-82378931 Msa1130270:CDS
TGATATGGTTACCGGGGCCT+TGG 0.305955 7_3:+82381008 None:intergenic
CACAAATAGATCAACAAAAT+AGG 0.329063 7_3:+82380676 None:intergenic
ACTTACTGTAACCCATGATA+TGG 0.371450 7_3:+82380993 None:intergenic
TAATTGTTGCCTGCGATACT+CGG 0.380713 7_3:+82380831 None:intergenic
TAGCTCCGGCGAAGATGTTA+TGG 0.402930 7_3:+82381383 None:intergenic
AAATGAGTTTCATTAATAGT+AGG 0.404332 7_3:+82378590 None:intergenic
GTAACCCATGATATGGTTAC+CGG 0.405860 7_3:+82381000 None:intergenic
TTCTGGGGAAGAAGATGGAT+TGG 0.420903 7_3:-82378914 Msa1130270:CDS
GATATGGTTACCGGGGCCTT+GGG 0.427052 7_3:+82381009 None:intergenic
GGTTACCGGGGCCTTGGGCG+AGG 0.434572 7_3:+82381014 None:intergenic
ATAGCAAGACGACTTCCAAC+AGG 0.454596 7_3:+82378549 None:intergenic
AAGTAAGCCCTATGGTTACT+TGG 0.466347 7_3:-82378499 Msa1130270:three_prime_UTR
TAGTCGTACTCTAACTCATC+AGG 0.466585 7_3:+82378723 None:intergenic
GAGTGCTACGCTATTATTCT+GGG 0.472245 7_3:-82378930 Msa1130270:CDS
TTGGGCGAGGTGGAAATAGT+CGG 0.473599 7_3:+82381027 None:intergenic
TCTGGGGAAGAAGATGGATT+GGG 0.475034 7_3:-82378913 Msa1130270:intron
AGCCATCAAAATGTATGAAA+AGG 0.478370 7_3:-82380636 Msa1130270:intron
AAGCCCTATGGTTACTTGGT+TGG 0.479678 7_3:-82378495 Msa1130270:three_prime_UTR
GTAGTTATGGGTAAAGTTGA+GGG 0.481119 7_3:-82380901 Msa1130270:intron
AGGCCCCGGTAACCATATCA+TGG 0.483412 7_3:-82381005 Msa1130270:CDS
GCCTCTCCGTCTGTCTCGAT+TGG 0.485805 7_3:-82381356 Msa1130270:intron
TTCCACCTCGCCCAAGGCCC+CGG 0.488885 7_3:-82381019 Msa1130270:CDS
TATTATTCTGGGGAAGAAGA+TGG 0.493124 7_3:-82378919 Msa1130270:CDS
GACTATTTCCACCTCGCCCA+AGG 0.493150 7_3:-82381025 Msa1130270:CDS
GGAGTGACAGGTCGTTTAAG+AGG 0.494138 7_3:+82378744 None:intergenic
TTGAGGGGCAAGGAGAATCT+TGG 0.494281 7_3:-82380885 Msa1130270:CDS
ACGGAGAGGCGAAGTAGCTC+CGG 0.494438 7_3:+82381369 None:intergenic
TGCTAGGTAGGTCATGTAGA+AGG 0.496038 7_3:+82381057 None:intergenic
TGACATTTGTAAAACGAAGA+AGG 0.498914 7_3:+82381185 None:intergenic
TGGGCGAGGTGGAAATAGTC+GGG 0.499600 7_3:+82381028 None:intergenic
TGTAGTTATGGGTAAAGTTG+AGG 0.505774 7_3:-82380902 Msa1130270:intron
TACCGGGGCCTTGGGCGAGG+TGG 0.518879 7_3:+82381017 None:intergenic
CTGTTGCTCCCGAGTATCGC+AGG 0.521448 7_3:-82380840 Msa1130270:CDS
TACATACAGTTTCAGTGAGA+TGG 0.523499 7_3:+82381155 None:intergenic
AATAGTCGGGCCATCGTGCT+AGG 0.528873 7_3:+82381041 None:intergenic
ATGGGTAAAGTTGAGGGGCA+AGG 0.534565 7_3:-82380895 Msa1130270:CDS
AATTGTTGCCTGCGATACTC+GGG 0.536449 7_3:+82380832 None:intergenic
TCTAACTCATCAGGAGTGAC+AGG 0.539202 7_3:+82378732 None:intergenic
ATTTAAAGTAGTGTCCCTGT+TGG 0.546190 7_3:-82378564 Msa1130270:three_prime_UTR
AAAACCAACCAAGTAACCAT+AGG 0.556472 7_3:+82378491 None:intergenic
TAACCCATGATATGGTTACC+GGG 0.568371 7_3:+82381001 None:intergenic
ACGTTTAGAAGTAAGCCCTA+TGG 0.573706 7_3:-82378507 Msa1130270:three_prime_UTR
GCCTTCCATAACATCTTCGC+CGG 0.581124 7_3:-82381388 Msa1130270:five_prime_UTR
GAGTGACAGGTCGTTTAAGA+GGG 0.595531 7_3:+82378745 None:intergenic
TTGCAACTATATGTTGCATG+AGG 0.599021 7_3:-82378668 Msa1130270:three_prime_UTR
GGCCCCGGTAACCATATCAT+GGG 0.604498 7_3:-82381004 Msa1130270:CDS
AAACCAACCAAGTAACCATA+GGG 0.606037 7_3:+82378492 None:intergenic
AGGTCGTTTAAGAGGGATGA+CGG 0.617126 7_3:+82378752 None:intergenic
AACTGACCAATCGAGACAGA+CGG 0.633041 7_3:+82381350 None:intergenic
TCCGGCGAAGATGTTATGGA+AGG 0.639553 7_3:+82381387 None:intergenic
TAGTTATGGGTAAAGTTGAG+GGG 0.650869 7_3:-82380900 Msa1130270:CDS
GGGCAAGGAGAATCTTGGCA+TGG 0.658826 7_3:-82380880 Msa1130270:CDS
GTCGGGCCATCGTGCTAGGT+AGG 0.658913 7_3:+82381045 None:intergenic
TGAAGATGACAACAATACGT+AGG 0.673340 7_3:-82381222 Msa1130270:exon
TAGCAAGACGACTTCCAACA+GGG 0.673413 7_3:+82378550 None:intergenic
ACCAATCGAGACAGACGGAG+AGG 0.676694 7_3:+82381355 None:intergenic
AACCCATGATATGGTTACCG+GGG 0.702997 7_3:+82381002 None:intergenic
AGTGCTACGCTATTATTCTG+GGG 0.705031 7_3:-82378929 Msa1130270:CDS
TGAGAGACATGCACCTACGT+TGG 0.706614 7_3:+82378459 None:intergenic
ACATGACCTACCTAGCACGA+TGG 0.757874 7_3:-82381051 Msa1130270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTTAATCTTTTAGAAT+TGG - chr7_3:82379166-82379185 Msa1130270:intron 15.0%
!! TACAACTTTATAAGTTAAAA+CGG + chr7_3:82380544-82380563 None:intergenic 15.0%
!! TTAACTTATAAAGTTGTAAT+TGG - chr7_3:82380546-82380565 Msa1130270:intron 15.0%
!! TAATCAATATATTTGCTTTA+AGG + chr7_3:82381275-82381294 None:intergenic 15.0%
!!! ATTTGTTTGTTTGAAATTGA+AGG - chr7_3:82378646-82378665 Msa1130270:three_prime_UTR 20.0%
!! TCATTAATGTAATGTAGTTA+TGG - chr7_3:82378993-82379012 Msa1130270:intron 20.0%
!! CATTAATGTAATGTAGTTAT+GGG - chr7_3:82378994-82379013 Msa1130270:intron 20.0%
!!! TTTTAATCTTTTAGAATTGG+AGG - chr7_3:82379169-82379188 Msa1130270:intron 20.0%
!! GCTAAAAAGTGAAATAAATT+GGG + chr7_3:82379792-82379811 None:intergenic 20.0%
!! AGCTAAAAAGTGAAATAAAT+TGG + chr7_3:82379793-82379812 None:intergenic 20.0%
!!! TTTCATATTCAGATTTTGTT+AGG + chr7_3:82380302-82380321 None:intergenic 20.0%
!! AAATCAAACCTATGTTTAAT+AGG + chr7_3:82380402-82380421 None:intergenic 20.0%
!!! AAAACAAAATTTTCAGATTG+TGG - chr7_3:82380643-82380662 Msa1130270:CDS 20.0%
!!! TATGTTTTCTTCATTAGATT+AGG - chr7_3:82380874-82380893 Msa1130270:CDS 20.0%
!! ATGAAGTAAAAACAAAAACA+TGG + chr7_3:82381027-82381046 None:intergenic 20.0%
!! TTCTCATATCTGAAAATAAA+GGG + chr7_3:82381105-82381124 None:intergenic 20.0%
!! TTTCTCATATCTGAAAATAA+AGG + chr7_3:82381106-82381125 None:intergenic 20.0%
!!! TTTATTTTCAGATATGAGAA+AGG - chr7_3:82381105-82381124 Msa1130270:intron 20.0%
!! AAATGAGTTTCATTAATAGT+AGG + chr7_3:82381320-82381339 None:intergenic 20.0%
!! ACTTTGTTACAAAAAAACTT+AGG + chr7_3:82381510-82381529 None:intergenic 20.0%
!!! TAATGAAGCTTTAGTTTTCT+TGG + chr7_3:82378410-82378429 None:intergenic 25.0%
! ATAATCGAGAGAGAAAAAAA+GGG + chr7_3:82378952-82378971 None:intergenic 25.0%
! TATAATCGAGAGAGAAAAAA+AGG + chr7_3:82378953-82378972 None:intergenic 25.0%
! AAATGAAAGAAAGATATGCA+AGG + chr7_3:82379151-82379170 None:intergenic 25.0%
! GTCTTGATATAAGTTAGAAT+TGG - chr7_3:82379191-82379210 Msa1130270:intron 25.0%
! CACAAATAGATCAACAAAAT+AGG + chr7_3:82379234-82379253 None:intergenic 25.0%
!! TACCTTTTCATACATTTTGA+TGG + chr7_3:82379276-82379295 None:intergenic 25.0%
! TTGAAAATAGAGTTCTTTCA+TGG + chr7_3:82379572-82379591 None:intergenic 25.0%
! ACATGTTGAAAAATCATAAG+TGG - chr7_3:82379603-82379622 Msa1130270:intron 25.0%
!! TAATGAGAAGTTAGATTTTG+TGG + chr7_3:82379643-82379662 None:intergenic 25.0%
! GTTGTATAAAGTACACAAAA+TGG + chr7_3:82379828-82379847 None:intergenic 25.0%
!!! TTGTAAAAGCACTAATAAGA+GGG + chr7_3:82379994-82380013 None:intergenic 25.0%
!!! ATTGTAAAAGCACTAATAAG+AGG + chr7_3:82379995-82380014 None:intergenic 25.0%
! GAAACATAATATGGAAAAGA+GGG + chr7_3:82380048-82380067 None:intergenic 25.0%
! AGAAACATAATATGGAAAAG+AGG + chr7_3:82380049-82380068 None:intergenic 25.0%
! CAGTACATAGAAACATAATA+TGG + chr7_3:82380057-82380076 None:intergenic 25.0%
! ACTTTACAAATAGCATCAAA+TGG - chr7_3:82380348-82380367 Msa1130270:intron 25.0%
!! AAATATTGTCTCAATGGATT+GGG - chr7_3:82380495-82380514 Msa1130270:intron 25.0%
!! TATAAAGTTGTAATTGGTTC+AGG - chr7_3:82380552-82380571 Msa1130270:intron 25.0%
!! ATTTTCAGATTGTGGTTTTT+TGG - chr7_3:82380651-82380670 Msa1130270:CDS 25.0%
! TATTATTATCCAACTGATGT+GGG + chr7_3:82380693-82380712 None:intergenic 25.0%
! TGTCATTGTAAATTGAATGT+TGG - chr7_3:82380844-82380863 Msa1130270:CDS 25.0%
! TGTAAATTGAATGTTGGATT+AGG - chr7_3:82380850-82380869 Msa1130270:CDS 25.0%
! AAAGAATTAGTTAGCAATTC+AGG + chr7_3:82380917-82380936 None:intergenic 25.0%
CTCAAAACAAATCAGATCAA+GGG + chr7_3:82378625-82378644 None:intergenic 30.0%
TCTCAAAACAAATCAGATCA+AGG + chr7_3:82378626-82378645 None:intergenic 30.0%
TGACATTTGTAAAACGAAGA+AGG + chr7_3:82378725-82378744 None:intergenic 30.0%
!! AATACCATTGAGTTGAGAAA+CGG + chr7_3:82378782-82378801 None:intergenic 30.0%
ACAAACAACATTAAGAACGA+AGG + chr7_3:82378815-82378834 None:intergenic 30.0%
TAATCGAGAGAGAAAAAAAG+GGG + chr7_3:82378951-82378970 None:intergenic 30.0%
! GAGAAGATTCATTAGTTTCT+TGG + chr7_3:82379103-82379122 None:intergenic 30.0%
!! TTTTCATACATTTTGATGGC+TGG + chr7_3:82379272-82379291 None:intergenic 30.0%
AGCCATCAAAATGTATGAAA+AGG - chr7_3:82379271-82379290 Msa1130270:intron 30.0%
ACATACAGAATCATCAAGTA+GGG - chr7_3:82379347-82379366 Msa1130270:intron 30.0%
TAAGAATTAGCATGAAGATG+AGG + chr7_3:82379378-82379397 None:intergenic 30.0%
TACCAGTTAGAGAAGAAAAA+AGG - chr7_3:82379413-82379432 Msa1130270:intron 30.0%
!!! TACCTTTTTTCTTCTCTAAC+TGG + chr7_3:82379418-82379437 None:intergenic 30.0%
AAAATAGAGTTCTTTCATGG+TGG + chr7_3:82379569-82379588 None:intergenic 30.0%
!! GATTTTTCAACATGTTAGCT+TGG + chr7_3:82379598-82379617 None:intergenic 30.0%
ATGCCTTCTGTTTAAAAACT+TGG - chr7_3:82379753-82379772 Msa1130270:intron 30.0%
TGCCTTCTGTTTAAAAACTT+GGG - chr7_3:82379754-82379773 Msa1130270:intron 30.0%
! TACCCAAGTTTTTAAACAGA+AGG + chr7_3:82379759-82379778 None:intergenic 30.0%
TTCTGTTTAAAAACTTGGGT+AGG - chr7_3:82379758-82379777 Msa1130270:intron 30.0%
!!! ACTTTTTAGCTTATTTCTGC+TGG - chr7_3:82379802-82379821 Msa1130270:intron 30.0%
CACTTAATGACTTTCTCAAT+GGG + chr7_3:82379888-82379907 None:intergenic 30.0%
TGTTATCTAAAAAACACCGT+AGG + chr7_3:82379934-82379953 None:intergenic 30.0%
!! AGATATGAATGAAAGCATTG+GGG + chr7_3:82380091-82380110 None:intergenic 30.0%
!! GAGATATGAATGAAAGCATT+GGG + chr7_3:82380092-82380111 None:intergenic 30.0%
! TGAGATATGAATGAAAGCAT+TGG + chr7_3:82380093-82380112 None:intergenic 30.0%
! TGCTATTTAAGCTTACTTTC+TGG - chr7_3:82380157-82380176 Msa1130270:intron 30.0%
TAGGATCAAAGCATAAAACA+CGG + chr7_3:82380383-82380402 None:intergenic 30.0%
GCTTTGATCCTATTAAACAT+AGG - chr7_3:82380391-82380410 Msa1130270:intron 30.0%
!! CTTCACTTTTCACAAGAAAT+CGG - chr7_3:82380439-82380458 Msa1130270:intron 30.0%
GAGATGAAATATTGTCTCAA+TGG - chr7_3:82380489-82380508 Msa1130270:intron 30.0%
GAAATATTGTCTCAATGGAT+TGG - chr7_3:82380494-82380513 Msa1130270:intron 30.0%
GTATTATTATCCAACTGATG+TGG + chr7_3:82380694-82380713 None:intergenic 30.0%
! AAGTCTGTGTCACTATTTAT+TGG - chr7_3:82381067-82381086 Msa1130270:CDS 30.0%
!! TTAGTTTTCTTGGTTGTGGT+CGG + chr7_3:82378400-82378419 None:intergenic 35.0%
!!! AGCTTTAGTTTTCTTGGTTG+TGG + chr7_3:82378404-82378423 None:intergenic 35.0%
GAAAGAGAAAGAGATTGAGA+GGG + chr7_3:82378586-82378605 None:intergenic 35.0%
TGAAAGAGAAAGAGATTGAG+AGG + chr7_3:82378587-82378606 None:intergenic 35.0%
TGAAGATGACAACAATACGT+AGG - chr7_3:82378685-82378704 Msa1130270:three_prime_UTR 35.0%
TACATACAGTTTCAGTGAGA+TGG + chr7_3:82378755-82378774 None:intergenic 35.0%
ACTTACTGTAACCCATGATA+TGG + chr7_3:82378917-82378936 None:intergenic 35.0%
TGTAGTTATGGGTAAAGTTG+AGG - chr7_3:82379005-82379024 Msa1130270:intron 35.0%
GTAGTTATGGGTAAAGTTGA+GGG - chr7_3:82379006-82379025 Msa1130270:intron 35.0%
TAGTTATGGGTAAAGTTGAG+GGG - chr7_3:82379007-82379026 Msa1130270:intron 35.0%
CATTTCAGATTCTGTCAGAA+AGG - chr7_3:82379312-82379331 Msa1130270:intron 35.0%
GACATACAGAATCATCAAGT+AGG - chr7_3:82379346-82379365 Msa1130270:intron 35.0%
CATACAGAATCATCAAGTAG+GGG - chr7_3:82379348-82379367 Msa1130270:intron 35.0%
ATACAGAATCATCAAGTAGG+GGG - chr7_3:82379349-82379368 Msa1130270:intron 35.0%
TGAGAGGAATCTCAATCAAA+CGG - chr7_3:82379490-82379509 Msa1130270:intron 35.0%
ATGACTTTCTCAATGGGATA+AGG + chr7_3:82379882-82379901 None:intergenic 35.0%
GCACTTAATGACTTTCTCAA+TGG + chr7_3:82379889-82379908 None:intergenic 35.0%
AGCACTAATAAGAGGGTAAA+AGG + chr7_3:82379987-82380006 None:intergenic 35.0%
CGATTTCTTGTGAAAAGTGA+AGG + chr7_3:82380441-82380460 None:intergenic 35.0%
! TGTAATTGGTTCAGGTGATT+TGG - chr7_3:82380560-82380579 Msa1130270:intron 35.0%
! TGGTCTGATTTTGCAAACAA+CGG - chr7_3:82380618-82380637 Msa1130270:intron 35.0%
TCCTATTTGACATCTTAGCT+TGG - chr7_3:82380937-82380956 Msa1130270:intron 35.0%
! TATTATTCTGGGGAAGAAGA+TGG - chr7_3:82380988-82381007 Msa1130270:intron 35.0%
TTGCAACTATATGTTGCATG+AGG - chr7_3:82381239-82381258 Msa1130270:exon 35.0%
! ATTTAAAGTAGTGTCCCTGT+TGG - chr7_3:82381343-82381362 Msa1130270:intron 35.0%
AAACCAACCAAGTAACCATA+GGG + chr7_3:82381418-82381437 None:intergenic 35.0%
AAAACCAACCAAGTAACCAT+AGG + chr7_3:82381419-82381438 None:intergenic 35.0%
ACTACCGTTTCTCAACTCAA+TGG - chr7_3:82378775-82378794 Msa1130270:CDS 40.0%
TAACCCATGATATGGTTACC+GGG + chr7_3:82378909-82378928 None:intergenic 40.0%
GTAACCCATGATATGGTTAC+CGG + chr7_3:82378910-82378929 None:intergenic 40.0%
TAATTGTTGCCTGCGATACT+CGG + chr7_3:82379079-82379098 None:intergenic 40.0%
GTTATCTCGATTGCATTGAG+AGG - chr7_3:82379474-82379493 Msa1130270:intron 40.0%
GAGAGGAATCTCAATCAAAC+GGG - chr7_3:82379491-82379510 Msa1130270:intron 40.0%
GGTTGTAGTGTTCTACTTCA+TGG - chr7_3:82379512-82379531 Msa1130270:intron 40.0%
! TAGAGTTCTTTCATGGTGGA+GGG + chr7_3:82379565-82379584 None:intergenic 40.0%
ATAGAGTTCTTTCATGGTGG+AGG + chr7_3:82379566-82379585 None:intergenic 40.0%
TTTCTCAATGGGATAAGGCT+TGG + chr7_3:82379877-82379896 None:intergenic 40.0%
! ACAAACAAAGCCTTGTCCTA+CGG - chr7_3:82379915-82379934 Msa1130270:intron 40.0%
CTAAAAAACACCGTAGGACA+AGG + chr7_3:82379928-82379947 None:intergenic 40.0%
!! AAAGCATTGGGGACATAGTT+GGG + chr7_3:82380080-82380099 None:intergenic 40.0%
! AAGCCTTATCTGACTAAGTG+GGG + chr7_3:82380246-82380265 None:intergenic 40.0%
! CAAGCCTTATCTGACTAAGT+GGG + chr7_3:82380247-82380266 None:intergenic 40.0%
! TCAAGCCTTATCTGACTAAG+TGG + chr7_3:82380248-82380267 None:intergenic 40.0%
CTTAGTCAGATAAGGCTTGA+TGG - chr7_3:82380248-82380267 Msa1130270:intron 40.0%
TTACTTTGTCCCACATCAGT+TGG - chr7_3:82380681-82380700 Msa1130270:CDS 40.0%
GCCAAGCTAAGATGTCAAAT+AGG + chr7_3:82380941-82380960 None:intergenic 40.0%
GAGTGCTACGCTATTATTCT+GGG - chr7_3:82380977-82380996 Msa1130270:intron 40.0%
AGTGCTACGCTATTATTCTG+GGG - chr7_3:82380978-82380997 Msa1130270:intron 40.0%
TAGTCGTACTCTAACTCATC+AGG + chr7_3:82381187-82381206 None:intergenic 40.0%
ACGTTTAGAAGTAAGCCCTA+TGG - chr7_3:82381400-82381419 Msa1130270:five_prime_UTR 40.0%
AAGTAAGCCCTATGGTTACT+TGG - chr7_3:82381408-82381427 Msa1130270:five_prime_UTR 40.0%
!!! TTACTTGGTTGGTTTTGAGC+AGG - chr7_3:82381423-82381442 Msa1130270:five_prime_UTR 40.0%
!!! TACTTGGTTGGTTTTGAGCA+GGG - chr7_3:82381424-82381443 Msa1130270:five_prime_UTR 40.0%
AACTGACCAATCGAGACAGA+CGG + chr7_3:82378560-82378579 None:intergenic 45.0%
TGCTAGGTAGGTCATGTAGA+AGG + chr7_3:82378853-82378872 None:intergenic 45.0%
AACCCATGATATGGTTACCG+GGG + chr7_3:82378908-82378927 None:intergenic 45.0%
AATTGTTGCCTGCGATACTC+GGG + chr7_3:82379078-82379097 None:intergenic 45.0%
!! GTAGGACAAGGCTTTGTTTG+TGG + chr7_3:82379916-82379935 None:intergenic 45.0%
!! GAAAGCATTGGGGACATAGT+TGG + chr7_3:82380081-82380100 None:intergenic 45.0%
! TGGCTAGTTCATGCGTAATC+TGG - chr7_3:82380580-82380599 Msa1130270:intron 45.0%
! CGTAATCTGGAATTGCAAGC+TGG - chr7_3:82380593-82380612 Msa1130270:intron 45.0%
! TCTGGAATTGCAAGCTGGTT+TGG - chr7_3:82380598-82380617 Msa1130270:intron 45.0%
CGAGTGCTACGCTATTATTC+TGG - chr7_3:82380976-82380995 Msa1130270:intron 45.0%
! TTCTGGGGAAGAAGATGGAT+TGG - chr7_3:82380993-82381012 Msa1130270:intron 45.0%
! TCTGGGGAAGAAGATGGATT+GGG - chr7_3:82380994-82381013 Msa1130270:intron 45.0%
!! GGAAGAAGATGGATTGGGTA+TGG - chr7_3:82380999-82381018 Msa1130270:CDS 45.0%
AGGTCGTTTAAGAGGGATGA+CGG + chr7_3:82381158-82381177 None:intergenic 45.0%
GAGTGACAGGTCGTTTAAGA+GGG + chr7_3:82381165-82381184 None:intergenic 45.0%
TCTAACTCATCAGGAGTGAC+AGG + chr7_3:82381178-82381197 None:intergenic 45.0%
TAGCAAGACGACTTCCAACA+GGG + chr7_3:82381360-82381379 None:intergenic 45.0%
ATAGCAAGACGACTTCCAAC+AGG + chr7_3:82381361-82381380 None:intergenic 45.0%
AAGCCCTATGGTTACTTGGT+TGG - chr7_3:82381412-82381431 Msa1130270:five_prime_UTR 45.0%
!!! ACTTGGTTGGTTTTGAGCAG+GGG - chr7_3:82381425-82381444 Msa1130270:five_prime_UTR 45.0%
!! ATAATAATACAATTAAATTA+TGG - chr7_3:82380704-82380723 Msa1130270:intron 5.0%
!! TAATAATACAATTAAATTAT+GGG - chr7_3:82380705-82380724 Msa1130270:intron 5.0%
!! TAATAATACAATTAAATTAA+GGG + chr7_3:82380771-82380790 None:intergenic 5.0%
!! TTAATAATACAATTAAATTA+AGG + chr7_3:82380772-82380791 None:intergenic 5.0%
!! TTAATTGTATTATTAAATTA+AGG - chr7_3:82380776-82380795 Msa1130270:intron 5.0%
!! TAATTGTATTATTAAATTAA+GGG - chr7_3:82380777-82380796 Msa1130270:intron 5.0%
GCCTTCCATAACATCTTCGC+CGG - chr7_3:82378519-82378538 Msa1130270:three_prime_UTR 50.0%
TCCGGCGAAGATGTTATGGA+AGG + chr7_3:82378523-82378542 None:intergenic 50.0%
TAGCTCCGGCGAAGATGTTA+TGG + chr7_3:82378527-82378546 None:intergenic 50.0%
ACATGACCTACCTAGCACGA+TGG - chr7_3:82378856-82378875 Msa1130270:intron 50.0%
TTGGGCGAGGTGGAAATAGT+CGG + chr7_3:82378883-82378902 None:intergenic 50.0%
ATGGGTAAAGTTGAGGGGCA+AGG - chr7_3:82379012-82379031 Msa1130270:intron 50.0%
TTGAGGGGCAAGGAGAATCT+TGG - chr7_3:82379022-82379041 Msa1130270:intron 50.0%
GAGGGTAACATCACAGGGAA+CGG + chr7_3:82379547-82379566 None:intergenic 50.0%
TGGTGGAGGGTAACATCACA+GGG + chr7_3:82379552-82379571 None:intergenic 50.0%
! ATGGTGGAGGGTAACATCAC+AGG + chr7_3:82379553-82379572 None:intergenic 50.0%
! ACCATACTCCAAGATGGTGG+TGG + chr7_3:82379693-82379712 None:intergenic 50.0%
GCTACCATACTCCAAGATGG+TGG + chr7_3:82379696-82379715 None:intergenic 50.0%
GCAGCTACCATACTCCAAGA+TGG + chr7_3:82379699-82379718 None:intergenic 50.0%
AGAGGGCAGAGTCTCAACTT+AGG + chr7_3:82380031-82380050 None:intergenic 50.0%
CGACCCCACTTAGTCAGATA+AGG - chr7_3:82380240-82380259 Msa1130270:intron 50.0%
GGAGTGACAGGTCGTTTAAG+AGG + chr7_3:82381166-82381185 None:intergenic 50.0%
TGAGAGACATGCACCTACGT+TGG + chr7_3:82381451-82381470 None:intergenic 50.0%
ACCAATCGAGACAGACGGAG+AGG + chr7_3:82378555-82378574 None:intergenic 55.0%
AATAGTCGGGCCATCGTGCT+AGG + chr7_3:82378869-82378888 None:intergenic 55.0%
TGGGCGAGGTGGAAATAGTC+GGG + chr7_3:82378882-82378901 None:intergenic 55.0%
GACTATTTCCACCTCGCCCA+AGG - chr7_3:82378882-82378901 Msa1130270:intron 55.0%
GATATGGTTACCGGGGCCTT+GGG + chr7_3:82378901-82378920 None:intergenic 55.0%
TGATATGGTTACCGGGGCCT+TGG + chr7_3:82378902-82378921 None:intergenic 55.0%
AGGCCCCGGTAACCATATCA+TGG - chr7_3:82378902-82378921 Msa1130270:intron 55.0%
GGCCCCGGTAACCATATCAT+GGG - chr7_3:82378903-82378922 Msa1130270:intron 55.0%
GGGCAAGGAGAATCTTGGCA+TGG - chr7_3:82379027-82379046 Msa1130270:intron 55.0%
GAGAACTGCCACCACCATCT+TGG - chr7_3:82379682-82379701 Msa1130270:intron 55.0%
GCCACCACCATCTTGGAGTA+TGG - chr7_3:82379689-82379708 Msa1130270:intron 55.0%
! TTTTGAGCAGGGGCCAACGT+AGG - chr7_3:82381435-82381454 Msa1130270:five_prime_UTR 55.0%
ACGGAGAGGCGAAGTAGCTC+CGG + chr7_3:82378541-82378560 None:intergenic 60.0%
GCCTCTCCGTCTGTCTCGAT+TGG - chr7_3:82378551-82378570 Msa1130270:three_prime_UTR 60.0%
! CTGTTGCTCCCGAGTATCGC+AGG - chr7_3:82379067-82379086 Msa1130270:intron 60.0%
GTCGGGCCATCGTGCTAGGT+AGG + chr7_3:82378865-82378884 None:intergenic 65.0%
TTCCACCTCGCCCAAGGCCC+CGG - chr7_3:82378888-82378907 Msa1130270:intron 70.0%
TACCGGGGCCTTGGGCGAGG+TGG + chr7_3:82378893-82378912 None:intergenic 75.0%
GGTTACCGGGGCCTTGGGCG+AGG + chr7_3:82378896-82378915 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 82378397 82381532 82378397 ID=Msa1130270;Name=Msa1130270
chr7_3 mRNA 82378397 82381532 82378397 ID=Msa1130270-mRNA-1;Parent=Msa1130270;Name=Msa1130270-mRNA-1;_AED=0.16;_eAED=0.16;_QI=198|1|1|1|0.83|0.85|7|325|174
chr7_3 exon 82378397 82378813 82378397 ID=Msa1130270-mRNA-1:exon:24254;Parent=Msa1130270-mRNA-1
chr7_3 exon 82378914 82378974 82378914 ID=Msa1130270-mRNA-1:exon:24253;Parent=Msa1130270-mRNA-1
chr7_3 exon 82380637 82380706 82380637 ID=Msa1130270-mRNA-1:exon:24252;Parent=Msa1130270-mRNA-1
chr7_3 exon 82380787 82380919 82380787 ID=Msa1130270-mRNA-1:exon:24251;Parent=Msa1130270-mRNA-1
chr7_3 exon 82380999 82381089 82380999 ID=Msa1130270-mRNA-1:exon:24250;Parent=Msa1130270-mRNA-1
chr7_3 exon 82381162 82381261 82381162 ID=Msa1130270-mRNA-1:exon:24249;Parent=Msa1130270-mRNA-1
chr7_3 exon 82381357 82381532 82381357 ID=Msa1130270-mRNA-1:exon:24248;Parent=Msa1130270-mRNA-1
chr7_3 five_prime_UTR 82381357 82381532 82381357 ID=Msa1130270-mRNA-1:five_prime_utr;Parent=Msa1130270-mRNA-1
chr7_3 five_prime_UTR 82381240 82381261 82381240 ID=Msa1130270-mRNA-1:five_prime_utr;Parent=Msa1130270-mRNA-1
chr7_3 CDS 82381162 82381239 82381162 ID=Msa1130270-mRNA-1:cds;Parent=Msa1130270-mRNA-1
chr7_3 CDS 82380999 82381089 82380999 ID=Msa1130270-mRNA-1:cds;Parent=Msa1130270-mRNA-1
chr7_3 CDS 82380787 82380919 82380787 ID=Msa1130270-mRNA-1:cds;Parent=Msa1130270-mRNA-1
chr7_3 CDS 82380637 82380706 82380637 ID=Msa1130270-mRNA-1:cds;Parent=Msa1130270-mRNA-1
chr7_3 CDS 82378914 82378974 82378914 ID=Msa1130270-mRNA-1:cds;Parent=Msa1130270-mRNA-1
chr7_3 CDS 82378722 82378813 82378722 ID=Msa1130270-mRNA-1:cds;Parent=Msa1130270-mRNA-1
chr7_3 three_prime_UTR 82378397 82378721 82378397 ID=Msa1130270-mRNA-1:three_prime_utr;Parent=Msa1130270-mRNA-1
Gene Sequence

>Msa1130270

ATGACAACAATACGTAGGTTTTGCTGCAACGACCTTCTTCGTTTTACAAATGTCAATCTTGACCATCTCACTGAAACTTTTAACATGTCCTTCTACATGACCTACCTAGCACGATGGCCCGACTATTTCCACCTCGCCCAAGGCCCCGGTAACCATATCATGGGTTACATTATGGGTAAAGTTGAGGGGCAAGGAGAATCTTGGCATGGTCATGTTACTGCAGTAACTGTTGCTCCCGAGTATCGCAGGCAACAATTAGCCAAGAAACTAATGAATCTTCTCGAAGACATCAGTGACAACATTGACAAAGCCTATTTTGTTGATCTATTTGTGAGAGCATCAAATGCACCAGCCATCAAAATGTATGAAAAGCTTGGCTATGTGATTTATCGACGAGTGCTACGCTATTATTCTGGGGAAGAAGATGGATTGGATATGAGAAAGGCATTATCTCGTGATATTGATAAGAAGTCCGTCATCCCTCTTAAACGACCTGTCACTCCTGATGAGTTAGAGTACGACTAA

Protein sequence

>Msa1130270

MTTIRRFCCNDLLRFTNVNLDHLTETFNMSFYMTYLARWPDYFHLAQGPGNHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMNLLEDISDNIDKAYFVDLFVRASNAPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDIDKKSVIPLKRPVTPDELEYD*