AlfalfaGEDB | Msa0188440

M. sativa cultivar zhongmu-4 / Msa0188440

KEGG: K14824
GO: GO:0000003 GO:0000463 GO:0000470 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007276 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0019953 GO:0022414 GO:0022613 GO:0030684 GO:0030686 GO:0030687 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044703 GO:0044877 GO:0046483 GO:0048609 GO:0050789 GO:0050794 GO:0051302 GO:0051704 GO:0065007 GO:0070013 GO:0070545 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904
PFAM: PF08145.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0188440	XP_003592947.3	89.262	745	13	5	1	678	1	745	0.0	1328

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0188440	sp\|F4IH25\|BOP1_ARATH	64.723	686	199	10	24	677	79	753	0.0	899

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0188440	Q2PEP5	82.055	730	74	4	5	678	10	738	0.0	1188

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030200	Msa0188440	0.802661	5.047117e-49	-8.615850e-47
Msa0164770	Msa0188440	0.879822	9.099871e-70	-8.615850e-47
Msa0170200	Msa0188440	0.806904	6.558543e-50	-8.615850e-47
Msa0188440	Msa0231030	0.909771	3.937485e-82	-8.615850e-47
Msa0188440	Msa0270550	0.901422	2.722228e-78	-8.615850e-47
Msa0188440	Msa0309000	0.816565	5.179111e-52	-8.615850e-47
Msa0188440	Msa0375310	0.813101	3.035639e-51	-8.615850e-47
Msa0188440	Msa0407200	0.819418	1.173776e-52	-8.615850e-47
Msa0188440	Msa0421500	0.816565	5.178425e-52	-8.615850e-47
Msa0188440	Msa0450710	0.803983	2.686618e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0188440	MtrunA17_Chr2g0277311	88.192	542	12	4	1	490	1	542	0.0	944
Msa0188440	MtrunA17_Chr2g0277301	99.000	100	1	0	579	678	1	100	5.42e-70	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0188440	AT2G40360.1	64.723	686	199	10	24	677	79	753	0.0	899
Msa0188440	AT2G40360.2	65.909	660	196	7	40	677	84	736	0.0	896

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Find 212 sgRNAs with CRISPR-Local

Find 493 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAAAGAAGAAAGAA+AGG	0.359734	2_1:+3632272	Msa0188440:CDS
AAAATTGGGAATAGAGTTAC+AGG	0.314181	2_1:-3638342	None:intergenic
AAACCAGACTTACGCAGAGA+CGG	0.621759	2_1:-3635441	None:intergenic
AAACTTCCTTTCAAGTTACA+TGG	0.460764	2_1:+3636587	Msa0188440:CDS
AAAGAAAGGGAAGACAAATT+GGG	0.504818	2_1:+3632286	Msa0188440:CDS
AAAGATAAAGAAGAAAGAAA+GGG	0.466560	2_1:+3632273	Msa0188440:CDS
AAAGCTTTGTTGGTTTGATA+TGG	0.264615	2_1:+3636902	Msa0188440:CDS
AAATCCTCTTATTGTTCCTT+TGG	0.289726	2_1:+3637937	Msa0188440:CDS
AACAATTGGGGAACAAAATT+GGG	0.349363	2_1:-3638356	None:intergenic
AACACGATGGTATAAGGTTA+AGG	0.454384	2_1:+3635894	Msa0188440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTAACGATGAAGAAAAAGA+CGG	+	chr2_1:3631073-3631092	Msa0188440:exon	30.0%
TCTGAATTAGAACATGAAGA+AGG	+	chr2_1:3631369-3631388	Msa0188440:intron	30.0%
GAAGTTGTTGAATCGAAATT+GGG	-	chr2_1:3631493-3631512	None:intergenic	30.0%
TGAAGTTGTTGAATCGAAAT+TGG	-	chr2_1:3631494-3631513	None:intergenic	30.0%
CAGGTCCATAGTAATATAAA+TGG	-	chr2_1:3632137-3632156	None:intergenic	30.0%
TTGATGTCATATCCAATATG+GGG	-	chr2_1:3632247-3632266	None:intergenic	30.0%
CTTGATGTCATATCCAATAT+GGG	-	chr2_1:3632248-3632267	None:intergenic	30.0%
CATATTGGATATGACATCAA+GGG	+	chr2_1:3632247-3632266	Msa0188440:CDS	30.0%
ATATTGGATATGACATCAAG+GGG	+	chr2_1:3632248-3632267	Msa0188440:CDS	30.0%
AAAGAAAGGGAAGACAAATT+GGG	+	chr2_1:3632286-3632305	Msa0188440:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	3630928	3638730	3630928	ID=Msa0188440;Name=Msa0188440
chr2_1	mRNA	3630928	3638730	3630928	ID=Msa0188440-mRNA-1;Parent=Msa0188440;Name=Msa0188440-mRNA-1;_AED=0.13;_eAED=0.13;_QI=152\|0.87\|0.88\|1\|1\|1\|17\|440\|678
chr2_1	exon	3630928	3631226	3630928	ID=Msa0188440-mRNA-1:exon:1510;Parent=Msa0188440-mRNA-1
chr2_1	exon	3632002	3632088	3632002	ID=Msa0188440-mRNA-1:exon:1511;Parent=Msa0188440-mRNA-1
chr2_1	exon	3632190	3632344	3632190	ID=Msa0188440-mRNA-1:exon:1512;Parent=Msa0188440-mRNA-1
chr2_1	exon	3633922	3634039	3633922	ID=Msa0188440-mRNA-1:exon:1513;Parent=Msa0188440-mRNA-1
chr2_1	exon	3634155	3634256	3634155	ID=Msa0188440-mRNA-1:exon:1514;Parent=Msa0188440-mRNA-1
chr2_1	exon	3634391	3634547	3634391	ID=Msa0188440-mRNA-1:exon:1515;Parent=Msa0188440-mRNA-1
chr2_1	exon	3634641	3634749	3634641	ID=Msa0188440-mRNA-1:exon:1516;Parent=Msa0188440-mRNA-1
chr2_1	exon	3634825	3634927	3634825	ID=Msa0188440-mRNA-1:exon:1517;Parent=Msa0188440-mRNA-1
chr2_1	exon	3635085	3635235	3635085	ID=Msa0188440-mRNA-1:exon:1518;Parent=Msa0188440-mRNA-1
chr2_1	exon	3635318	3635450	3635318	ID=Msa0188440-mRNA-1:exon:1519;Parent=Msa0188440-mRNA-1
chr2_1	exon	3635575	3635681	3635575	ID=Msa0188440-mRNA-1:exon:1520;Parent=Msa0188440-mRNA-1
chr2_1	exon	3635855	3635925	3635855	ID=Msa0188440-mRNA-1:exon:1521;Parent=Msa0188440-mRNA-1
chr2_1	exon	3636016	3636046	3636016	ID=Msa0188440-mRNA-1:exon:1522;Parent=Msa0188440-mRNA-1
chr2_1	exon	3636552	3636764	3636552	ID=Msa0188440-mRNA-1:exon:1523;Parent=Msa0188440-mRNA-1
chr2_1	exon	3636871	3636955	3636871	ID=Msa0188440-mRNA-1:exon:1524;Parent=Msa0188440-mRNA-1
chr2_1	exon	3637817	3637995	3637817	ID=Msa0188440-mRNA-1:exon:1525;Parent=Msa0188440-mRNA-1
chr2_1	exon	3638202	3638730	3638202	ID=Msa0188440-mRNA-1:exon:1526;Parent=Msa0188440-mRNA-1
chr2_1	five_prime_UTR	3630928	3631079	3630928	ID=Msa0188440-mRNA-1:five_prime_utr;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3631080	3631226	3631080	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3632002	3632088	3632002	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3632190	3632344	3632190	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3633922	3634039	3633922	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3634155	3634256	3634155	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3634391	3634547	3634391	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3634641	3634749	3634641	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3634825	3634927	3634825	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3635085	3635235	3635085	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3635318	3635450	3635318	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3635575	3635681	3635575	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3635855	3635925	3635855	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3636016	3636046	3636016	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3636552	3636764	3636552	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3636871	3636955	3636871	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3637817	3637995	3637817	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	CDS	3638202	3638290	3638202	ID=Msa0188440-mRNA-1:cds;Parent=Msa0188440-mRNA-1
chr2_1	three_prime_UTR	3638291	3638730	3638291	ID=Msa0188440-mRNA-1:three_prime_utr;Parent=Msa0188440-mRNA-1

Gene Sequence

>Msa0188440

ATGAAGAAAAAGACGGTTGTTGAAGCCGAGATGAAGAAGAAAGAGGAAGCACCGCCGCCTCCATCTGATCATGATGATTCCGATGACGACGACTCCGATGACAGTGTTGAAGTTTCCGACTACGATTCCATTTCCGAAGATGAAGAGGACGTTGATGACTCGGAAGGTGGAAGTGAAAGCTCCGATCTTCATCAGGAAGGAGGAGGTGCTGAGAGTGATTCATCTGAGGATGAGGTGGCTCCTCGAAATACCATTGGAGAGGTCCCTTTGAAGTGGTATGAGGATGAACCCCATATTGGATATGACATCAAGGGGAAAAAGATAAAGAAGAAAGAAAGGGAAGACAAATTGGGTTCCTTTCTTGCAAATGTTGATGATTCTAAGAATTGGCGGAAGGTCTTTGATGAGTACAATGATGAGGAAGTGGTGTTGACAAAAGATGAAATCAAAATGGTGCGCAAACTAATGCAGAATAAGGCACCACATTCTGACTTTGATCCACATCCGGATTATGTTGAGTGGTTCAAATGGGATGATGCCAAGCATCCATTGTCTAACGCACCCGAACCCAAACGAAGGTTCATTCCTTCAAAGTGGGAAGCTAAAAAGGTTGTGCAGTATGTTAGAGGAATTCGCAATGGAACAATAACTTTTGACAAGCCAAAGAAGGAGGATGATTCTTATCTCTTGTGGGAAGATGATTCTGGTTTGACAGAAAAAGCAAATCATTTGGCTTACATTCCTGCACCAAAGCAGAAACTTCCTGGCCATGATGAGTCATATAATCCTCCTTTAGAGTATATTCCAACCCAAGAAGAGATTAATTCATATCAATTGATGTATGAAGAAGACCGCCCTAAATTTATCCCACAAAGGTTTACATCTATGAGAAGCATCCCTGCATATGACAATGCTATGAAGGAAAGTTTTGAACGCTGTTTGGATTTGTACTTGTGCCCTCGAGTTCGAAGAAAACGTCTTAATATTGATCCTGAATCTTTAAAGCCAAAGCTTCCAAATAAAAAGGAGCTTAAACCTTACCCCATAACATGCTATATCGAATATAAAGGCCATGAAGGTGCAGTTACATCAATTTCTATTGAAGCTTCAGGGCAGTGGATGGCTTCAGGTTCAAGTGATGGAACTGTCCGTGTCTGGGAGGTTGAAACTGGCAGATGTCTGAGACAGTGGGAGATTGGTGAAGCTGTGAACTGTGTTACTTGGAATCCTCTGTCTGATATTCATATTGTGGCCGTCTCTGCGGGACAAGATGTACTTCTGTTAAACACTGGCTTGGGTGATGAAGAAGAACAGCAAAGGATTAAGGAGCTTCTCTTGATTGACTCACCAGAAGCATCAGATGAGACTGGCAAGAAAGCACCTAGTGTACGCTGGCTTAAAGATGATAAACACGATGGTATAAGGTTAAGGCATTTAAAGAATGTTACTTCTGTGGAATGGCACCGGAAAGTTCTGATTCACCAGTTGTCCAAGAAACTCTCACAAAAACTTCCTTTCAAGTTACATGGACTTGCTGTTAGATCAACCTTCCATCCATCTCGTTCCATCTTCTTTATTTGTACAAAGAAGACTGTTCGTGTGTTTGATTTATTGAAGTCTAAACAAATAAAAAAGCTTGATACCGGTCTCAAAGAAGCCTCGTCAATTGCAGTCCATCCTGGAGGTGATAATTTAATTGTGGGGAGCAAAGAAGGAAAGCTTTGTTGGTTTGATATGGACCTTTCGTCTAAACCATATAAAGTTCTTAAGTGTCATCCAAAAGATATTAACAACGTTGTCTTTCATCGTTCATATCCCTTGTTTGCTTCGTGCTCAGATGACTGCACTGCATATGTTTTTCACGGAATGGTTTATTCTGATCTCAATAAAAATCCTCTTATTGTTCCTTTGGAAATTCTACGGGGCCATGCAAATTCAAATGGGAGAGGAATATTGGACTGCAAGTTTCACCCCAGGCAACCCTGGTTATTTACAGCTGGGGCTGACAAGATGATTAAACTTTACTGTCACCACTAA

Protein sequence

>Msa0188440

MKKKTVVEAEMKKKEEAPPPPSDHDDSDDDDSDDSVEVSDYDSISEDEEDVDDSEGGSESSDLHQEGGGAESDSSEDEVAPRNTIGEVPLKWYEDEPHIGYDIKGKKIKKKEREDKLGSFLANVDDSKNWRKVFDEYNDEEVVLTKDEIKMVRKLMQNKAPHSDFDPHPDYVEWFKWDDAKHPLSNAPEPKRRFIPSKWEAKKVVQYVRGIRNGTITFDKPKKEDDSYLLWEDDSGLTEKANHLAYIPAPKQKLPGHDESYNPPLEYIPTQEEINSYQLMYEEDRPKFIPQRFTSMRSIPAYDNAMKESFERCLDLYLCPRVRRKRLNIDPESLKPKLPNKKELKPYPITCYIEYKGHEGAVTSISIEASGQWMASGSSDGTVRVWEVETGRCLRQWEIGEAVNCVTWNPLSDIHIVAVSAGQDVLLLNTGLGDEEEQQRIKELLLIDSPEASDETGKKAPSVRWLKDDKHDGIRLRHLKNVTSVEWHRKVLIHQLSKKLSQKLPFKLHGLAVRSTFHPSRSIFFICTKKTVRVFDLLKSKQIKKLDTGLKEASSIAVHPGGDNLIVGSKEGKLCWFDMDLSSKPYKVLKCHPKDINNVVFHRSYPLFASCSDDCTAYVFHGMVYSDLNKNPLIVPLEILRGHANSNGRGILDCKFHPRQPWLFTAGADKMIKLYCHH*