Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216830 | XP_003596480.1 | 97.087 | 103 | 3 | 0 | 1 | 103 | 1 | 103 | 5.81e-62 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216830 | G7IR50 | 97.087 | 103 | 3 | 0 | 1 | 103 | 1 | 103 | 2.77e-62 | 194 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076040 | Msa0216830 | 0.801868 | 7.349330e-49 | -8.615850e-47 |
| Msa0082280 | Msa0216830 | 0.815392 | 9.463955e-52 | -8.615850e-47 |
| Msa0127310 | Msa0216830 | 0.812912 | 3.338098e-51 | -8.615850e-47 |
| Msa0174770 | Msa0216830 | 0.821997 | 2.998364e-53 | -8.615850e-47 |
| Msa0181610 | Msa0216830 | 0.820369 | 7.112273e-53 | -8.615850e-47 |
| Msa0199880 | Msa0216830 | 0.809222 | 2.105628e-50 | -8.615850e-47 |
| Msa0216830 | Msa0244780 | 0.804785 | 1.828744e-49 | -8.615850e-47 |
| Msa0216830 | Msa0298990 | 0.800414 | 1.457431e-48 | -8.615850e-47 |
| Msa0216830 | Msa0369450 | 0.800988 | 1.112813e-48 | -8.615850e-47 |
| Msa0216830 | Msa0581070 | 0.804021 | 2.638388e-49 | -8.615850e-47 |
| Msa0216830 | Msa0687630 | 0.824450 | 8.018266e-54 | -8.615850e-47 |
| Msa0216830 | Msa1019240 | 0.812704 | 3.708292e-51 | -8.615850e-47 |
| Msa0216830 | Msa1019260 | 0.817172 | 3.785257e-52 | -8.615850e-47 |
| Msa0216830 | Msa1126510 | 0.813740 | 2.196294e-51 | -8.615850e-47 |
| Msa0216830 | Msa1126770 | 0.809249 | 2.077483e-50 | -8.615850e-47 |
| Msa0216830 | Msa1166860 | 0.813405 | 2.602493e-51 | -8.615850e-47 |
| Msa0216830 | Msa1184370 | 0.804873 | 1.752807e-49 | -8.615850e-47 |
| Msa0216830 | Msa1227690 | 0.827829 | 1.260490e-54 | -8.615850e-47 |
| Msa0216830 | Msa1349570 | 0.816525 | 5.287191e-52 | -8.615850e-47 |
| Msa0216830 | Msa1370860 | 0.816369 | 5.730401e-52 | -8.615850e-47 |
| Msa0216830 | Msa1448690 | 0.800529 | 1.381131e-48 | -8.615850e-47 |
| Msa0216830 | Msa1450280 | 0.814680 | 1.362084e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216830 | MtrunA17_Chr2g0318421 | 97.087 | 103 | 3 | 0 | 1 | 103 | 1 | 103 | 5.34e-66 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGAATTCAGTTATTTGTTT+AGG | 0.384801 | 2_1:-63010435 | Msa0216830:three_prime_UTR |
| CGCGGCAGACTTCTCATTTG+CGG | 0.410034 | 2_1:+63010612 | None:intergenic |
| TCTACGAATAAATAACTTGC+TGG | 0.413180 | 2_1:-63010537 | Msa0216830:exon |
| GGAGCTAAAATCAAGGTTGC+TGG | 0.433275 | 2_1:-63012592 | Msa0216830:CDS |
| GCAATGGATACATCAGAATC+AGG | 0.468029 | 2_1:-63012613 | Msa0216830:CDS |
| GAATATACCTTGAGGTGCTT+CGG | 0.481198 | 2_1:+63012783 | None:intergenic |
| CGGTGAAGCGGCGCAGAGAA+AGG | 0.493829 | 2_1:+63012896 | None:intergenic |
| CTTCAATCTTAAATAACACT+TGG | 0.499964 | 2_1:+63010412 | None:intergenic |
| GTCGGTTATGTCCATCGAAA+CGG | 0.525995 | 2_1:+63012816 | None:intergenic |
| CACCGTCCGCTCCAATCCAA+TGG | 0.550931 | 2_1:-63012878 | Msa0216830:exon |
| AACAGGAAGGTGAAGCAGAA+TGG | 0.552894 | 2_1:-63010694 | Msa0216830:intron |
| CGCCATTGGATTGGAGCGGA+CGG | 0.556534 | 2_1:+63012876 | None:intergenic |
| TTCAGACTTGGAAACTTTCG+CGG | 0.568580 | 2_1:+63010594 | None:intergenic |
| CGAATAAATAACTTGCTGGA+TGG | 0.589204 | 2_1:-63010533 | Msa0216830:exon |
| GATTGGAGCGGACGGTGAAG+CGG | 0.593944 | 2_1:+63012884 | None:intergenic |
| AGAATCAGGAGCTAAAATCA+AGG | 0.594733 | 2_1:-63012599 | Msa0216830:CDS |
| TCGTCTAAACTAAATTACAA+AGG | 0.595938 | 2_1:+63010454 | None:intergenic |
| GGAAGGTGAAGCAGAATGGA+AGG | 0.604858 | 2_1:-63010690 | Msa0216830:CDS |
| ATCGTTTCCGAAGCACCTCA+AGG | 0.606213 | 2_1:-63012790 | Msa0216830:intron |
| AAGTATCAAAATTTAATGAG+TGG | 0.607047 | 2_1:+63010501 | None:intergenic |
| GCTAAAATCAAGGTTGCTGG+TGG | 0.607057 | 2_1:-63012589 | Msa0216830:CDS |
| TGCTTCGGAAACGATGGTGT+CGG | 0.636322 | 2_1:+63012798 | None:intergenic |
| TTGAGGTGCTTCGGAAACGA+TGG | 0.645225 | 2_1:+63012792 | None:intergenic |
| GTAAACCTAAAACAGAGCTG+TGG | 0.697872 | 2_1:+63010310 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTATAATTTTTTAAAGA+AGG | - | chr2_1:63011579-63011598 | Msa0216830:intron | 10.0% |
| !!! | TTCCTTTTTTTTTTTTTTTG+TGG | - | chr2_1:63010622-63010641 | Msa0216830:CDS | 15.0% |
| !! | AACCACAAAAAAAAAAAAAA+AGG | + | chr2_1:63010627-63010646 | None:intergenic | 15.0% |
| !! | AATAAAGAAAACTTACAAAA+TGG | + | chr2_1:63010731-63010750 | None:intergenic | 15.0% |
| !!! | TTATAATTTTTTAAAGAAGG+CGG | - | chr2_1:63011582-63011601 | Msa0216830:intron | 15.0% |
| !! | AAAAACAAGAAGAACAAAAA+CGG | - | chr2_1:63010448-63010467 | Msa0216830:three_prime_UTR | 20.0% |
| !!! | TTAATTTGTTTATCCAAACA+AGG | + | chr2_1:63010925-63010944 | None:intergenic | 20.0% |
| !! | AATCAAACTTATTGGATTAA+GGG | + | chr2_1:63011063-63011082 | None:intergenic | 20.0% |
| !! | AAATCAAACTTATTGGATTA+AGG | + | chr2_1:63011064-63011083 | None:intergenic | 20.0% |
| !! | TTAATCCAATAAGTTTGATT+TGG | - | chr2_1:63011063-63011082 | Msa0216830:intron | 20.0% |
| !! | TTTGCATAATAATAGTTGTA+TGG | - | chr2_1:63012255-63012274 | Msa0216830:intron | 20.0% |
| !! | TTGCATAATAATAGTTGTAT+GGG | - | chr2_1:63012256-63012275 | Msa0216830:intron | 20.0% |
| !!! | CATAAAGTTTTAAACAATGA+TGG | + | chr2_1:63012409-63012428 | None:intergenic | 20.0% |
| !!! | CATCATTGTTTAAAACTTTA+TGG | - | chr2_1:63012407-63012426 | Msa0216830:intron | 20.0% |
| !! | AAGTATCAAAATTTAATGAG+TGG | + | chr2_1:63012791-63012810 | None:intergenic | 20.0% |
| !! | ATAAAGATGCAACAAAAATA+AGG | + | chr2_1:63012905-63012924 | None:intergenic | 20.0% |
| ! | TAGAGAATCACAAGTTAAAT+GGG | - | chr2_1:63010797-63010816 | Msa0216830:intron | 25.0% |
| !! | ACCAAAGCATTAAAAAACTA+GGG | + | chr2_1:63010853-63010872 | None:intergenic | 25.0% |
| !! | AACCAAAGCATTAAAAAACT+AGG | + | chr2_1:63010854-63010873 | None:intergenic | 25.0% |
| !!! | TTTTTTAATGCTTTGGTTGA+TGG | - | chr2_1:63010856-63010875 | Msa0216830:intron | 25.0% |
| ! | AAATACCAACTTAGAATATG+AGG | + | chr2_1:63011172-63011191 | None:intergenic | 25.0% |
| !! | TTTAAAACATATATGTGCGT+AGG | + | chr2_1:63011617-63011636 | None:intergenic | 25.0% |
| !!! | AAAAAGTGTCATCAAAATGA+GGG | + | chr2_1:63011905-63011924 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGTCATCAAAATG+AGG | + | chr2_1:63011906-63011925 | None:intergenic | 25.0% |
| ! | ACAGTTAACATATAACTCAT+AGG | + | chr2_1:63011983-63012002 | None:intergenic | 25.0% |
| ! | TTCTATCAAACAATCATTCA+AGG | + | chr2_1:63012068-63012087 | None:intergenic | 25.0% |
| ! | AATGATTGTTTGATAGAACA+AGG | - | chr2_1:63012070-63012089 | Msa0216830:intron | 25.0% |
| ! | AGTCTATCAATAGGAAAATT+TGG | - | chr2_1:63012220-63012239 | Msa0216830:intron | 25.0% |
| !! | TATTATGTTTTGCAAGTAGA+TGG | + | chr2_1:63012482-63012501 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTGTTTTCAGACT+TGG | + | chr2_1:63012710-63012729 | None:intergenic | 25.0% |
| ! | TCGTCTAAACTAAATTACAA+AGG | + | chr2_1:63012838-63012857 | None:intergenic | 25.0% |
| ! | ACGAATTCAGTTATTTGTTT+AGG | - | chr2_1:63012854-63012873 | Msa0216830:CDS | 25.0% |
| ! | CTTCAATCTTAAATAACACT+TGG | + | chr2_1:63012880-63012899 | None:intergenic | 25.0% |
| !! | TTTTCTCAAATATCGACTGA+TGG | + | chr2_1:63010351-63010370 | None:intergenic | 30.0% |
| !! | CTTTTGTTTATTTGCAGCAA+TGG | - | chr2_1:63010660-63010679 | Msa0216830:CDS | 30.0% |
| GACGAAGGCTAAAAATATAA+GGG | + | chr2_1:63010755-63010774 | None:intergenic | 30.0% | |
| GTAGAGAATCACAAGTTAAA+TGG | - | chr2_1:63010796-63010815 | Msa0216830:intron | 30.0% | |
| AGAGAATCACAAGTTAAATG+GGG | - | chr2_1:63010798-63010817 | Msa0216830:intron | 30.0% | |
| !!! | ACCCTAGTTTTTTAATGCTT+TGG | - | chr2_1:63010849-63010868 | Msa0216830:intron | 30.0% |
| CTTATTCATAACCACTCATA+TGG | + | chr2_1:63010961-63010980 | None:intergenic | 30.0% | |
| TTGCACCAAATCAAACTTAT+TGG | + | chr2_1:63011071-63011090 | None:intergenic | 30.0% | |
| ! | ATTGGATGTTGTTGTTGAAT+TGG | - | chr2_1:63011121-63011140 | Msa0216830:intron | 30.0% |
| ! | TTGGATGTTGTTGTTGAATT+GGG | - | chr2_1:63011122-63011141 | Msa0216830:intron | 30.0% |
| ACTTAGAATATGAGGAGATA+TGG | + | chr2_1:63011164-63011183 | None:intergenic | 30.0% | |
| TATCTCCTCATATTCTAAGT+TGG | - | chr2_1:63011164-63011183 | Msa0216830:intron | 30.0% | |
| ATCACTTAACTGTGTGATAT+AGG | - | chr2_1:63011249-63011268 | Msa0216830:intron | 30.0% | |
| !!! | GCAATGTAGTTTTTTTTGCA+TGG | - | chr2_1:63011348-63011367 | Msa0216830:intron | 30.0% |
| !! | AATCACATTTACTTTTGCAC+TGG | - | chr2_1:63011390-63011409 | Msa0216830:intron | 30.0% |
| !! | TATTCTTTAAAGCATGCACT+TGG | - | chr2_1:63011470-63011489 | Msa0216830:intron | 30.0% |
| ! | ATAGTAGTTGCCTTGTATTT+TGG | - | chr2_1:63011520-63011539 | Msa0216830:intron | 30.0% |
| ! | TAGTAGTTGCCTTGTATTTT+GGG | - | chr2_1:63011521-63011540 | Msa0216830:intron | 30.0% |
| TGTTCGTATTCTAATTACAC+AGG | + | chr2_1:63011752-63011771 | None:intergenic | 30.0% | |
| GAATACGAACAATTCACTAA+TGG | - | chr2_1:63011761-63011780 | Msa0216830:intron | 30.0% | |
| CTTACAAAATTGATCAGCAT+TGG | + | chr2_1:63011796-63011815 | None:intergenic | 30.0% | |
| CATGTTATAATTGAGGACAT+TGG | + | chr2_1:63012015-63012034 | None:intergenic | 30.0% | |
| ATTCAAGGCAAAAATTCTGA+TGG | + | chr2_1:63012053-63012072 | None:intergenic | 30.0% | |
| ATCATAGACTCGATTGATAT+CGG | + | chr2_1:63012100-63012119 | None:intergenic | 30.0% | |
| ATATCAATCGAGTCTATGAT+AGG | - | chr2_1:63012100-63012119 | Msa0216830:intron | 30.0% | |
| AGCCAAATAGAGAGTTAAAT+AGG | - | chr2_1:63012127-63012146 | Msa0216830:intron | 30.0% | |
| GCCAAATAGAGAGTTAAATA+GGG | - | chr2_1:63012128-63012147 | Msa0216830:intron | 30.0% | |
| CCAAATAGAGAGTTAAATAG+GGG | - | chr2_1:63012129-63012148 | Msa0216830:intron | 30.0% | |
| ATAACTGACAATAGTTAGCT+AGG | - | chr2_1:63012180-63012199 | Msa0216830:intron | 30.0% | |
| !! | TGTATGGGATATTTGTTATC+AGG | - | chr2_1:63012271-63012290 | Msa0216830:intron | 30.0% |
| AAAACTGATGAACAATTCAC+AGG | + | chr2_1:63012309-63012328 | None:intergenic | 30.0% | |
| AATATTCTATACTTTCGCAG+AGG | - | chr2_1:63012334-63012353 | Msa0216830:intron | 30.0% | |
| TCACGAAGTATATTACAGAA+GGG | + | chr2_1:63012366-63012385 | None:intergenic | 30.0% | |
| !! | ACACTTTTTGATCTCTTCAT+GGG | + | chr2_1:63012625-63012644 | None:intergenic | 30.0% |
| !! | AACACTTTTTGATCTCTTCA+TGG | + | chr2_1:63012626-63012645 | None:intergenic | 30.0% |
| ! | TCTACGAATAAATAACTTGC+TGG | - | chr2_1:63012752-63012771 | Msa0216830:intron | 30.0% |
| TGAAAAGCGAATATACCTTG+AGG | + | chr2_1:63010517-63010536 | None:intergenic | 35.0% | |
| AGAATCAGGAGCTAAAATCA+AGG | - | chr2_1:63010690-63010709 | Msa0216830:CDS | 35.0% | |
| CGACGAAGGCTAAAAATATA+AGG | + | chr2_1:63010756-63010775 | None:intergenic | 35.0% | |
| AAGTTAAATGGGGTTTAACG+CGG | - | chr2_1:63010808-63010827 | Msa0216830:intron | 35.0% | |
| GCAACGATTTGAGAAAATGT+TGG | + | chr2_1:63010894-63010913 | None:intergenic | 35.0% | |
| TTCTCAAATCGTTGCAATTC+AGG | - | chr2_1:63010899-63010918 | Msa0216830:intron | 35.0% | |
| AATCTCACATGTGAATATGC+TGG | - | chr2_1:63010995-63011014 | Msa0216830:intron | 35.0% | |
| TAATCAGTTGAGTAACTGGA+CGG | + | chr2_1:63011102-63011121 | None:intergenic | 35.0% | |
| CCAATAATCAGTTGAGTAAC+TGG | + | chr2_1:63011106-63011125 | None:intergenic | 35.0% | |
| CCAGTTACTCAACTGATTAT+TGG | - | chr2_1:63011103-63011122 | Msa0216830:intron | 35.0% | |
| AGTCATCATTCTTTGTCGAA+CGG | - | chr2_1:63011221-63011240 | Msa0216830:intron | 35.0% | |
| ACTGTGTGATATAGGAAATC+TGG | - | chr2_1:63011257-63011276 | Msa0216830:intron | 35.0% | |
| CTGTGTGATATAGGAAATCT+GGG | - | chr2_1:63011258-63011277 | Msa0216830:intron | 35.0% | |
| AGTTGAACGCAATTATAGGA+GGG | + | chr2_1:63011291-63011310 | None:intergenic | 35.0% | |
| GTACAGTTGAACGCAATTAT+AGG | + | chr2_1:63011295-63011314 | None:intergenic | 35.0% | |
| CCATTGCTACAATGAAGAAA+TGG | + | chr2_1:63011329-63011348 | None:intergenic | 35.0% | |
| CCATTTCTTCATTGTAGCAA+TGG | - | chr2_1:63011326-63011345 | Msa0216830:intron | 35.0% | |
| !! | TTACTTTTGCACTGGATGTT+AGG | - | chr2_1:63011398-63011417 | Msa0216830:intron | 35.0% |
| ATCTGTTGAGTTCTTGAAGA+AGG | - | chr2_1:63011446-63011465 | Msa0216830:intron | 35.0% | |
| TCTGTTGAGTTCTTGAAGAA+GGG | - | chr2_1:63011447-63011466 | Msa0216830:intron | 35.0% | |
| CAAAGCAAACCCAAAATACA+AGG | + | chr2_1:63011533-63011552 | None:intergenic | 35.0% | |
| ! | ATAATGTTTTCTGCTCTGCT+GGG | + | chr2_1:63011711-63011730 | None:intergenic | 35.0% |
| TTACACAGGCAATTTAGTGA+TGG | + | chr2_1:63011738-63011757 | None:intergenic | 35.0% | |
| ! | TTTGCTCTTCTGTTTTGTCA+TGG | - | chr2_1:63011952-63011971 | Msa0216830:intron | 35.0% |
| ! | TTGCTCTTCTGTTTTGTCAT+GGG | - | chr2_1:63011953-63011972 | Msa0216830:intron | 35.0% |
| TCATAGACTCGATTGATATC+GGG | + | chr2_1:63012099-63012118 | None:intergenic | 35.0% | |
| CCCCTATTTAACTCTCTATT+TGG | + | chr2_1:63012132-63012151 | None:intergenic | 35.0% | |
| CTCACGAAGTATATTACAGA+AGG | + | chr2_1:63012367-63012386 | None:intergenic | 35.0% | |
| TTTGCAAGTAGATGGAAATC+AGG | + | chr2_1:63012474-63012493 | None:intergenic | 35.0% | |
| !! | CGAATAAATAACTTGCTGGA+TGG | - | chr2_1:63012756-63012775 | Msa0216830:intron | 35.0% |
| ! | AAAAACCACAGCTCTGTTTT+AGG | - | chr2_1:63012974-63012993 | Msa0216830:five_prime_UTR | 35.0% |
| !! | TTGTTCCTGTTTTTCGCCAT+TGG | + | chr2_1:63010430-63010449 | None:intergenic | 40.0% |
| ! | GAATATACCTTGAGGTGCTT+CGG | + | chr2_1:63010509-63010528 | None:intergenic | 40.0% |
| GCAATGGATACATCAGAATC+AGG | - | chr2_1:63010676-63010695 | Msa0216830:CDS | 40.0% | |
| TCACATGTGAATATGCTGGT+AGG | - | chr2_1:63010999-63011018 | Msa0216830:intron | 40.0% | |
| CAGTTGAACGCAATTATAGG+AGG | + | chr2_1:63011292-63011311 | None:intergenic | 40.0% | |
| !! | TGGATGTTAGGTTCTAGACT+TGG | - | chr2_1:63011410-63011429 | Msa0216830:intron | 40.0% |
| ! | GATAATGTTTTCTGCTCTGC+TGG | + | chr2_1:63011712-63011731 | None:intergenic | 40.0% |
| AGTTCAGTTCGCATAGTTGA+TGG | - | chr2_1:63011851-63011870 | Msa0216830:intron | 40.0% | |
| TCCTCAATTATAACATGCGC+TGG | - | chr2_1:63012018-63012037 | Msa0216830:intron | 40.0% | |
| TCCAGCGCATGTTATAATTG+AGG | + | chr2_1:63012022-63012041 | None:intergenic | 40.0% | |
| AGTTAGCTAGGAAGAGTAGA+TGG | - | chr2_1:63012192-63012211 | Msa0216830:intron | 40.0% | |
| ATGGATGGGAGTCTATCAAT+AGG | - | chr2_1:63012211-63012230 | Msa0216830:intron | 40.0% | |
| ACTGATGAACAATTCACAGG+AGG | + | chr2_1:63012306-63012325 | None:intergenic | 40.0% | |
| GTGTTTACTCCACGACATAT+TGG | + | chr2_1:63012438-63012457 | None:intergenic | 40.0% | |
| TTCAGACTTGGAAACTTTCG+CGG | + | chr2_1:63012698-63012717 | None:intergenic | 40.0% | |
| GTAAACCTAAAACAGAGCTG+TGG | + | chr2_1:63012982-63013001 | None:intergenic | 40.0% | |
| !! | TTTTCGCCATTGGATTGGAG+CGG | + | chr2_1:63010420-63010439 | None:intergenic | 45.0% |
| !! | CCTGTTTTTCGCCATTGGAT+TGG | + | chr2_1:63010425-63010444 | None:intergenic | 45.0% |
| CCAATCCAATGGCGAAAAAC+AGG | - | chr2_1:63010422-63010441 | Msa0216830:three_prime_UTR | 45.0% | |
| GTCGGTTATGTCCATCGAAA+CGG | + | chr2_1:63010476-63010495 | None:intergenic | 45.0% | |
| GGAGCTAAAATCAAGGTTGC+TGG | - | chr2_1:63010697-63010716 | Msa0216830:intron | 45.0% | |
| GCTAAAATCAAGGTTGCTGG+TGG | - | chr2_1:63010700-63010719 | Msa0216830:intron | 45.0% | |
| ! | ATTATCAAGCATCGCGACGA+AGG | + | chr2_1:63010770-63010789 | None:intergenic | 45.0% |
| !! | GTTGCAATTCAGGCCTTGTT+TGG | - | chr2_1:63010909-63010928 | Msa0216830:intron | 45.0% |
| TGCAGCTTCTACCATATGAG+TGG | - | chr2_1:63010947-63010966 | Msa0216830:intron | 45.0% | |
| CGCAATTATAGGAGGGAAGA+GGG | + | chr2_1:63011284-63011303 | None:intergenic | 45.0% | |
| ACGCAATTATAGGAGGGAAG+AGG | + | chr2_1:63011285-63011304 | None:intergenic | 45.0% | |
| AGCTAGGAAGAGTAGATGGA+TGG | - | chr2_1:63012196-63012215 | Msa0216830:intron | 45.0% | |
| GCTAGGAAGAGTAGATGGAT+GGG | - | chr2_1:63012197-63012216 | Msa0216830:intron | 45.0% | |
| AACAATTCACAGGAGGTTCG+AGG | + | chr2_1:63012299-63012318 | None:intergenic | 45.0% | |
| GTAGATGGAAATCAGGAAGC+AGG | + | chr2_1:63012467-63012486 | None:intergenic | 45.0% | |
| !!! | GCATGCTTTTGCTCTGAAAC+AGG | - | chr2_1:63012578-63012597 | Msa0216830:CDS | 45.0% |
| !!! | GCTTTTGCTCTGAAACAGGA+AGG | - | chr2_1:63012582-63012601 | Msa0216830:CDS | 45.0% |
| AACAGGAAGGTGAAGCAGAA+TGG | - | chr2_1:63012595-63012614 | Msa0216830:CDS | 45.0% | |
| !! | CAAAAACGGTGCCGTTTCGA+TGG | - | chr2_1:63010462-63010481 | Msa0216830:three_prime_UTR | 50.0% |
| TGCTTCGGAAACGATGGTGT+CGG | + | chr2_1:63010494-63010513 | None:intergenic | 50.0% | |
| ! | TTGAGGTGCTTCGGAAACGA+TGG | + | chr2_1:63010500-63010519 | None:intergenic | 50.0% |
| ! | ATCGTTTCCGAAGCACCTCA+AGG | - | chr2_1:63010499-63010518 | Msa0216830:three_prime_UTR | 50.0% |
| !! | ACTTGGTGCACTGCAAGATG+TGG | - | chr2_1:63011487-63011506 | Msa0216830:intron | 50.0% |
| ATGGTGCGTCCAATATGTCG+TGG | - | chr2_1:63012426-63012445 | Msa0216830:intron | 50.0% | |
| GGAAGGTGAAGCAGAATGGA+AGG | - | chr2_1:63012599-63012618 | Msa0216830:CDS | 50.0% | |
| CGCGGCAGACTTCTCATTTG+CGG | + | chr2_1:63012680-63012699 | None:intergenic | 55.0% | |
| GATTGGAGCGGACGGTGAAG+CGG | + | chr2_1:63010408-63010427 | None:intergenic | 60.0% | |
| CACCGTCCGCTCCAATCCAA+TGG | - | chr2_1:63010411-63010430 | Msa0216830:three_prime_UTR | 60.0% | |
| ! | CGCCATTGGATTGGAGCGGA+CGG | + | chr2_1:63010416-63010435 | None:intergenic | 60.0% |
| CGGTGAAGCGGCGCAGAGAA+AGG | + | chr2_1:63010396-63010415 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 63010309 | 63013002 | 63010309 | ID=Msa0216830;Name=Msa0216830 |
| chr2_1 | mRNA | 63010309 | 63013002 | 63010309 | ID=Msa0216830-mRNA-1;Parent=Msa0216830;Name=Msa0216830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=121|1|1|1|1|1|3|240|103 |
| chr2_1 | exon | 63010309 | 63010711 | 63010309 | ID=Msa0216830-mRNA-1:exon:17505;Parent=Msa0216830-mRNA-1 |
| chr2_1 | exon | 63012577 | 63012634 | 63012577 | ID=Msa0216830-mRNA-1:exon:17504;Parent=Msa0216830-mRNA-1 |
| chr2_1 | exon | 63012791 | 63013002 | 63012791 | ID=Msa0216830-mRNA-1:exon:17503;Parent=Msa0216830-mRNA-1 |
| chr2_1 | five_prime_UTR | 63012882 | 63013002 | 63012882 | ID=Msa0216830-mRNA-1:five_prime_utr;Parent=Msa0216830-mRNA-1 |
| chr2_1 | CDS | 63012791 | 63012881 | 63012791 | ID=Msa0216830-mRNA-1:cds;Parent=Msa0216830-mRNA-1 |
| chr2_1 | CDS | 63012577 | 63012634 | 63012577 | ID=Msa0216830-mRNA-1:cds;Parent=Msa0216830-mRNA-1 |
| chr2_1 | CDS | 63010549 | 63010711 | 63010549 | ID=Msa0216830-mRNA-1:cds;Parent=Msa0216830-mRNA-1 |
| chr2_1 | three_prime_UTR | 63010309 | 63010548 | 63010309 | ID=Msa0216830-mRNA-1:three_prime_utr;Parent=Msa0216830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
