Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223760 | XP_003597523.1 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223760 | sp|Q9M1B9|SCRK4_ARATH | 82.927 | 328 | 52 | 1 | 1 | 328 | 1 | 324 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223760 | G7IHV2 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024500 | Msa0223760 | -0.841288 | 5.203088e-58 | -8.615850e-47 |
| Msa0047230 | Msa0223760 | -0.803621 | 3.194944e-49 | -8.615850e-47 |
| Msa0067750 | Msa0223760 | -0.851816 | 6.934886e-61 | -8.615850e-47 |
| Msa0072390 | Msa0223760 | -0.814580 | 1.433356e-51 | -8.615850e-47 |
| Msa0135070 | Msa0223760 | -0.804241 | 2.373850e-49 | -8.615850e-47 |
| Msa0163960 | Msa0223760 | -0.828488 | 8.742348e-55 | -8.615850e-47 |
| Msa0208710 | Msa0223760 | -0.800600 | 1.335541e-48 | -8.615850e-47 |
| Msa0216150 | Msa0223760 | -0.804221 | 2.396893e-49 | -8.615850e-47 |
| Msa0223760 | Msa0225070 | -0.815930 | 7.180888e-52 | -8.615850e-47 |
| Msa0223760 | Msa0265620 | -0.809776 | 1.600493e-50 | -8.615850e-47 |
| Msa0223760 | Msa0305910 | -0.800926 | 1.145951e-48 | -8.615850e-47 |
| Msa0223760 | Msa0561420 | -0.800250 | 1.573902e-48 | -8.615850e-47 |
| Msa0223760 | Msa0615430 | -0.809928 | 1.484857e-50 | -8.615850e-47 |
| Msa0223760 | Msa0672950 | 0.836609 | 8.465717e-57 | -8.615850e-47 |
| Msa0223760 | Msa0672980 | 0.834199 | 3.440089e-56 | -8.615850e-47 |
| Msa0223760 | Msa0698480 | -0.804864 | 1.760687e-49 | -8.615850e-47 |
| Msa0223760 | Msa0698650 | -0.804443 | 2.155129e-49 | -8.615850e-47 |
| Msa0223760 | Msa0703150 | -0.801006 | 1.103749e-48 | -8.615850e-47 |
| Msa0223760 | Msa0848670 | -0.801027 | 1.092685e-48 | -8.615850e-47 |
| Msa0223760 | Msa0907170 | 0.805487 | 1.303877e-49 | -8.615850e-47 |
| Msa0223760 | Msa0967900 | -0.821970 | 3.041986e-53 | -8.615850e-47 |
| Msa0223760 | Msa1093190 | -0.802857 | 4.597686e-49 | -8.615850e-47 |
| Msa0223760 | Msa1101300 | -0.803793 | 2.942075e-49 | -8.615850e-47 |
| Msa0223760 | Msa1286950 | -0.813662 | 2.284958e-51 | -8.615850e-47 |
| Msa0223760 | Msa1319230 | -0.829658 | 4.551833e-55 | -8.615850e-47 |
| Msa0223760 | Msa1402300 | 0.834695 | 2.582981e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223760 | MtrunA17_Chr2g0329451 | 99.088 | 329 | 3 | 0 | 1 | 329 | 1 | 329 | 0.0 | 662 |
| Msa0223760 | MtrunA17_Chr4g0033631 | 89.752 | 322 | 33 | 0 | 7 | 328 | 8 | 329 | 0.0 | 594 |
| Msa0223760 | MtrunA17_Chr1g0188291 | 67.722 | 316 | 102 | 0 | 14 | 329 | 8 | 323 | 4.42e-161 | 452 |
| Msa0223760 | MtrunA17_Chr5g0434971 | 68.111 | 323 | 101 | 2 | 5 | 325 | 57 | 379 | 3.51e-154 | 437 |
| Msa0223760 | MtrunA17_Chr6g0474331 | 62.617 | 321 | 118 | 1 | 9 | 327 | 23 | 343 | 2.58e-150 | 426 |
| Msa0223760 | MtrunA17_Chr1g0204101 | 63.385 | 325 | 113 | 2 | 8 | 326 | 13 | 337 | 1.16e-148 | 421 |
| Msa0223760 | MtrunA17_Chr1g0183241 | 50.158 | 317 | 135 | 4 | 12 | 326 | 108 | 403 | 6.23e-100 | 300 |
| Msa0223760 | MtrunA17_Chr1g0183661 | 49.301 | 286 | 131 | 4 | 29 | 312 | 3 | 276 | 2.21e-93 | 280 |
| Msa0223760 | MtrunA17_Chr1g0171921 | 47.368 | 323 | 157 | 6 | 12 | 327 | 181 | 497 | 2.15e-92 | 285 |
| Msa0223760 | MtrunA17_Chr1g0177771 | 47.077 | 325 | 153 | 6 | 4 | 325 | 244 | 552 | 6.58e-92 | 284 |
| Msa0223760 | MtrunA17_Chr1g0177321 | 44.923 | 325 | 151 | 6 | 4 | 325 | 170 | 469 | 4.98e-85 | 264 |
| Msa0223760 | MtrunA17_Chr7g0246421 | 55.208 | 192 | 84 | 2 | 138 | 327 | 2 | 193 | 1.50e-67 | 210 |
| Msa0223760 | MtrunA17_Chr1g0176221 | 46.121 | 232 | 96 | 2 | 94 | 325 | 4 | 206 | 4.26e-63 | 199 |
| Msa0223760 | MtrunA17_Chr4g0008441 | 32.698 | 367 | 200 | 4 | 7 | 326 | 86 | 452 | 1.37e-53 | 182 |
| Msa0223760 | MtrunA17_Chr5g0419371 | 32.362 | 309 | 184 | 5 | 40 | 326 | 250 | 555 | 3.18e-49 | 173 |
| Msa0223760 | MtrunA17_Chr7g0246411 | 57.692 | 130 | 53 | 1 | 14 | 141 | 41 | 170 | 1.32e-47 | 158 |
| Msa0223760 | MtrunA17_Chr4g0020911 | 51.880 | 133 | 62 | 1 | 139 | 269 | 57 | 189 | 3.59e-40 | 140 |
| Msa0223760 | MtrunA17_Chr2g0314311 | 27.397 | 292 | 180 | 9 | 45 | 327 | 89 | 357 | 1.08e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223760 | AT3G59480.1 | 82.927 | 328 | 52 | 1 | 1 | 328 | 1 | 324 | 0.0 | 559 |
| Msa0223760 | AT2G31390.1 | 83.228 | 316 | 53 | 0 | 13 | 328 | 8 | 323 | 0.0 | 545 |
| Msa0223760 | AT1G06030.1 | 79.878 | 328 | 63 | 1 | 1 | 328 | 1 | 325 | 0.0 | 544 |
| Msa0223760 | AT1G06020.1 | 79.573 | 328 | 63 | 1 | 1 | 328 | 1 | 324 | 0.0 | 541 |
| Msa0223760 | AT4G10260.1 | 68.239 | 318 | 101 | 0 | 12 | 329 | 4 | 321 | 5.14e-159 | 447 |
| Msa0223760 | AT1G66430.1 | 64.907 | 322 | 111 | 2 | 3 | 323 | 55 | 375 | 1.18e-153 | 436 |
| Msa0223760 | AT5G51830.2 | 65.094 | 318 | 109 | 1 | 14 | 329 | 23 | 340 | 8.02e-149 | 422 |
| Msa0223760 | AT5G51830.1 | 65.094 | 318 | 109 | 1 | 14 | 329 | 23 | 340 | 8.02e-149 | 422 |
| Msa0223760 | AT1G50390.1 | 60.588 | 170 | 38 | 1 | 159 | 328 | 1 | 141 | 1.24e-65 | 204 |
| Msa0223760 | AT3G54090.1 | 32.970 | 367 | 198 | 6 | 7 | 326 | 96 | 461 | 1.68e-53 | 182 |
| Msa0223760 | AT1G69200.1 | 30.903 | 288 | 177 | 3 | 40 | 306 | 246 | 532 | 1.15e-41 | 153 |
| Msa0223760 | AT1G17160.1 | 27.759 | 299 | 174 | 10 | 45 | 328 | 105 | 376 | 5.81e-16 | 78.6 |
| Msa0223760 | AT1G06730.1 | 25.839 | 298 | 198 | 8 | 46 | 329 | 132 | 420 | 2.32e-14 | 73.9 |
Find 126 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATATAAAGGAATGTATTT+TGG | 0.133523 | 2_1:-73430039 | None:intergenic |
| AAAACTCCCTAAACATTATT+TGG | 0.172265 | 2_1:-73432895 | None:intergenic |
| ACAAGGAGCAACTTCAAATT+TGG | 0.187281 | 2_1:-73432150 | None:intergenic |
| GCAAGCAAATACTGAGTATT+TGG | 0.192010 | 2_1:+73432031 | Msa0223760:CDS |
| GAATAAAATTACTAAAATTA+AGG | 0.222135 | 2_1:-73430122 | None:intergenic |
| GAGAAGGCAGCCAGCTTCTT+TGG | 0.228047 | 2_1:-73431956 | None:intergenic |
| ATCAAAATCATTGCCGAGTT+TGG | 0.242662 | 2_1:+73432872 | Msa0223760:three_prime_UTR |
| AGCAATCACAACTACTAAAA+AGG | 0.271618 | 2_1:+73432669 | Msa0223760:CDS |
| TTCCTTTGTTGGTGCTCTAT+TGG | 0.279273 | 2_1:+73432395 | Msa0223760:CDS |
| CATGCTCGCCGGGATCTTAA+AGG | 0.306436 | 2_1:+73430544 | Msa0223760:CDS |
| AAATTAACATAGATATAATA+TGG | 0.307153 | 2_1:-73432968 | None:intergenic |
| AATAAAATTACTAAAATTAA+GGG | 0.307392 | 2_1:-73430121 | None:intergenic |
| AGTTTGGCCAAATAATGTTT+AGG | 0.322917 | 2_1:+73432888 | Msa0223760:three_prime_UTR |
| CTAAGCACTTACTTCTAATA+TGG | 0.330358 | 2_1:-73432439 | None:intergenic |
| AGTTCGAGGTTGAGTTCTTC+AGG | 0.330827 | 2_1:-73430701 | None:intergenic |
| TGGCTCCACAATCAAGCTTA+TGG | 0.338825 | 2_1:-73431899 | None:intergenic |
| GCCATCGCTGTTTCCCGATT+AGG | 0.339195 | 2_1:+73430473 | Msa0223760:CDS |
| GTTTGGCCAAATAATGTTTA+GGG | 0.350000 | 2_1:+73432889 | Msa0223760:three_prime_UTR |
| TAGTGCAAAAGAAAATAATT+AGG | 0.356811 | 2_1:+73433041 | Msa0223760:three_prime_UTR |
| GACTTTGTCCCAACAGTCTC+CGG | 0.359175 | 2_1:+73430389 | Msa0223760:CDS |
| CAAGCAAATACTGAGTATTT+GGG | 0.361004 | 2_1:+73432032 | Msa0223760:CDS |
| AAAAGAAGTAAATGATATAA+AGG | 0.370338 | 2_1:-73430051 | None:intergenic |
| TCGTGGTAAATATTTATAGA+AGG | 0.371952 | 2_1:-73430208 | None:intergenic |
| AGGCGGCTTTGCCTCCTAAT+CGG | 0.377551 | 2_1:-73430487 | None:intergenic |
| TTGAAATAGGTAAGATCTAC+TGG | 0.381098 | 2_1:-73433071 | None:intergenic |
| GGTGCCGGTGATTCCTTTGT+TGG | 0.398386 | 2_1:+73432384 | Msa0223760:CDS |
| GGCCAAGATTGTTGATGATC+AGG | 0.401747 | 2_1:+73432416 | Msa0223760:CDS |
| AACGTTCGCTGGTGCACCGC+CGG | 0.402108 | 2_1:-73430450 | None:intergenic |
| GCCGGGAGCTTTGAGGAAAC+CGG | 0.402931 | 2_1:-73430432 | None:intergenic |
| CCAAGGTGCACGTACTGCTT+TGG | 0.410980 | 2_1:+73430601 | Msa0223760:CDS |
| GTCAATACAGTTGATACAAC+TGG | 0.425906 | 2_1:+73432363 | Msa0223760:CDS |
| AAGTTGCTCCTTGTCACTCT+TGG | 0.431035 | 2_1:+73432159 | Msa0223760:CDS |
| GGAGGCAAAGCCGCCTTTGT+CGG | 0.435911 | 2_1:+73430494 | Msa0223760:CDS |
| CTTGTCACTCTTGGTGAACA+TGG | 0.436126 | 2_1:+73432168 | Msa0223760:CDS |
| CAAGGAGCAACTTCAAATTT+GGG | 0.437763 | 2_1:-73432149 | None:intergenic |
| GGCGGCTTTGCCTCCTAATC+GGG | 0.438513 | 2_1:-73430486 | None:intergenic |
| CACAAGGGTAGGCGGAGGTT+AGG | 0.440870 | 2_1:-73431988 | None:intergenic |
| CAGGAATCTATGCTTTGATC+AGG | 0.443006 | 2_1:-73432732 | None:intergenic |
| GTGCACCGCCGGGAGCTTTG+AGG | 0.445875 | 2_1:-73430439 | None:intergenic |
| CAAAATCATTAGCACAAGAA+AGG | 0.446246 | 2_1:+73433091 | Msa0223760:three_prime_UTR |
| ATGTAGATCAGCACACTTGA+AGG | 0.450810 | 2_1:+73431921 | Msa0223760:CDS |
| GAGGCAAAGCCGCCTTTGTC+GGG | 0.454605 | 2_1:+73430495 | Msa0223760:CDS |
| GGGAGACCCCGGAGACTGTT+GGG | 0.455113 | 2_1:-73430397 | None:intergenic |
| ACTTTGTCCCAACAGTCTCC+GGG | 0.456193 | 2_1:+73430390 | Msa0223760:CDS |
| TTCAGTACATCCTCCTCCTT+GGG | 0.459048 | 2_1:-73432709 | None:intergenic |
| GTTCAGTACATCCTCCTCCT+TGG | 0.459298 | 2_1:-73432710 | None:intergenic |
| AATACTGAGTATTTGGGAAA+AGG | 0.459878 | 2_1:+73432038 | Msa0223760:CDS |
| GGCTTCTGCGAGGGAGACCC+CGG | 0.465913 | 2_1:-73430408 | None:intergenic |
| GGCCTGATCATCAACAATCT+TGG | 0.466456 | 2_1:-73432418 | None:intergenic |
| ACAGCGATGGCAACGTTCGC+TGG | 0.466980 | 2_1:-73430461 | None:intergenic |
| ACGTTCGCTGGTGCACCGCC+GGG | 0.467168 | 2_1:-73430449 | None:intergenic |
| ACTGGTCTCATCGTCAGCTT+CGG | 0.467497 | 2_1:+73430353 | Msa0223760:CDS |
| TCCTCCTCCTTGGGAAGAGC+AGG | 0.469695 | 2_1:-73432700 | None:intergenic |
| AATGAGCTGGAGTTCCTCAC+TGG | 0.483755 | 2_1:+73432084 | Msa0223760:CDS |
| GCCGCCTTTGTCGGGAAACT+AGG | 0.491217 | 2_1:+73430503 | Msa0223760:CDS |
| GGAAAGAAAAGTAAATATGC+AGG | 0.493681 | 2_1:-73432751 | None:intergenic |
| TTAAGAAGCATGTCAGCACT+TGG | 0.493995 | 2_1:-73430677 | None:intergenic |
| ATAGGTAAGATCTACTGGTT+GGG | 0.494296 | 2_1:-73433066 | None:intergenic |
| TAAATATTTATAGAAGGAGT+TGG | 0.502281 | 2_1:-73430202 | None:intergenic |
| CTTGCGAGCTTCATCAGCCG+AGG | 0.503105 | 2_1:-73432013 | None:intergenic |
| GGAAAAGGCTGATCTGATCA+AGG | 0.504055 | 2_1:+73432053 | Msa0223760:CDS |
| CAAGAGCAACTCCAATGAAA+AGG | 0.504859 | 2_1:-73432786 | None:intergenic |
| CCGGGAGCTTTGAGGAAACC+GGG | 0.506801 | 2_1:-73430431 | None:intergenic |
| CCCGGTTTCCTCAAAGCTCC+CGG | 0.508496 | 2_1:+73430431 | Msa0223760:CDS |
| ATGGAAGTTGCCAAAGAAGC+TGG | 0.510846 | 2_1:+73431946 | Msa0223760:CDS |
| GTCTCCCTCGCAGAAGCCCC+CGG | 0.512463 | 2_1:+73430413 | Msa0223760:CDS |
| TGAGACCAGTGCCTGTGGTT+GGG | 0.512647 | 2_1:-73430340 | None:intergenic |
| CCGCCTACCCTTGTGGCCCT+CGG | 0.512817 | 2_1:+73431996 | Msa0223760:CDS |
| AAACTAGGCGATGACGAGTT+CGG | 0.513562 | 2_1:+73430518 | Msa0223760:CDS |
| CATAAACTCACGCTCTCCAT+CGG | 0.515761 | 2_1:-73430642 | None:intergenic |
| AAACATTATTTGGCCAAACT+CGG | 0.517031 | 2_1:-73432885 | None:intergenic |
| ATGCTACTGCTTTGACATTG+TGG | 0.517687 | 2_1:+73432124 | Msa0223760:CDS |
| GGCATCCCAACCACAGGCAC+TGG | 0.519828 | 2_1:+73430335 | Msa0223760:CDS |
| AGTTCGGTCACATGCTCGCC+GGG | 0.520035 | 2_1:+73430534 | Msa0223760:CDS |
| GAGTTCGGTCACATGCTCGC+CGG | 0.524794 | 2_1:+73430533 | Msa0223760:CDS |
| GTACAGATCTGATGAGTTCG+AGG | 0.528295 | 2_1:-73430715 | None:intergenic |
| CAGCCGAGGGCCACAAGGGT+AGG | 0.529220 | 2_1:-73431999 | None:intergenic |
| AAACCACTCAGTCAAACAAT+CGG | 0.530464 | 2_1:-73433001 | None:intergenic |
| AGGGAGACCCCGGAGACTGT+TGG | 0.531689 | 2_1:-73430398 | None:intergenic |
| GCCGGGATCTTAAAGGAAAA+CGG | 0.533796 | 2_1:+73430551 | Msa0223760:CDS |
| AATAGGTAAGATCTACTGGT+TGG | 0.537205 | 2_1:-73433067 | None:intergenic |
| ACTTCAATGGCTTCAAGCAA+TGG | 0.538580 | 2_1:+73430314 | Msa0223760:exon |
| AGAAGGAGTTGGTAGAGAGA+AGG | 0.542899 | 2_1:-73430191 | None:intergenic |
| ATCGCTGTTTCCCGATTAGG+AGG | 0.543446 | 2_1:+73430476 | Msa0223760:CDS |
| TCCTGCTCTTCCCAAGGAGG+AGG | 0.543892 | 2_1:+73432699 | Msa0223760:CDS |
| TTCATCAGCCGAGGGCCACA+AGG | 0.545538 | 2_1:-73432004 | None:intergenic |
| CAAGGTTAGTGATAATGAGC+TGG | 0.551346 | 2_1:+73432071 | Msa0223760:CDS |
| TGAATGCATCTACTTGTCCA+TGG | 0.557038 | 2_1:-73432338 | None:intergenic |
| CCGAGGGCCACAAGGGTAGG+CGG | 0.558718 | 2_1:-73431996 | None:intergenic |
| TTCAAGTGTGCTGATCTACA+TGG | 0.561390 | 2_1:-73431919 | None:intergenic |
| AGGGCCACAAGGGTAGGCGG+AGG | 0.561736 | 2_1:-73431993 | None:intergenic |
| TCAAGCTTATGGATCCATAG+TGG | 0.562307 | 2_1:-73431888 | None:intergenic |
| ATCAGCACACTTGAAGGCAA+TGG | 0.564340 | 2_1:+73431927 | Msa0223760:CDS |
| TTGCGAGCTTCATCAGCCGA+GGG | 0.565323 | 2_1:-73432012 | None:intergenic |
| AGCAATTCCTGCTCTTCCCA+AGG | 0.570369 | 2_1:+73432693 | Msa0223760:CDS |
| AGCACCAACAAAGGAATCAC+CGG | 0.570827 | 2_1:-73432388 | None:intergenic |
| TGGATCCATAAGCTTGATTG+TGG | 0.577549 | 2_1:+73431894 | Msa0223760:CDS |
| ACAGTTGATACAACTGGTGC+CGG | 0.581263 | 2_1:+73432369 | Msa0223760:CDS |
| GAAAACGGTGTGGTCGCAGA+AGG | 0.582324 | 2_1:+73430566 | Msa0223760:CDS |
| TCCTAATCGGGAAACAGCGA+TGG | 0.583230 | 2_1:-73430474 | None:intergenic |
| ATCGCCTAGTTTCCCGACAA+AGG | 0.583484 | 2_1:-73430507 | None:intergenic |
| CTAACCTCCGCCTACCCTTG+TGG | 0.590573 | 2_1:+73431989 | Msa0223760:CDS |
| AGTACGTGCACCTTGGTCAA+AGG | 0.592226 | 2_1:-73430594 | None:intergenic |
| CCAAAGCAGTACGTGCACCT+TGG | 0.592587 | 2_1:-73430601 | None:intergenic |
| ATGAGACCAGTGCCTGTGGT+TGG | 0.592790 | 2_1:-73430341 | None:intergenic |
| TGTCCGATTGTTTGACTGAG+TGG | 0.598099 | 2_1:+73432998 | Msa0223760:three_prime_UTR |
| CTCAAGTTTGCAAATGCATG+TGG | 0.598828 | 2_1:+73432646 | Msa0223760:CDS |
| GGTTAGGATCATAAGAGAGA+AGG | 0.600234 | 2_1:-73431972 | None:intergenic |
| AGATACAAGAATGAGTTTCG+TGG | 0.604897 | 2_1:-73430225 | None:intergenic |
| AGCAATGGCATCCCAACCAC+AGG | 0.606388 | 2_1:+73430329 | Msa0223760:CDS |
| TTTGTTACTCTACGCGCCGA+TGG | 0.610292 | 2_1:+73430626 | Msa0223760:CDS |
| GGCCAATAGAGCACCAACAA+AGG | 0.615796 | 2_1:-73432397 | None:intergenic |
| CATGTTCACCAAGAGTGACA+AGG | 0.619134 | 2_1:-73432167 | None:intergenic |
| GAGCAACTCCAATGAAAAGG+TGG | 0.622957 | 2_1:-73432783 | None:intergenic |
| GCCTAGTTTCCCGACAAAGG+CGG | 0.631977 | 2_1:-73430504 | None:intergenic |
| GAAGGTATAACCTTTGACCA+AGG | 0.632928 | 2_1:+73430584 | Msa0223760:CDS |
| CGGGAGCTTTGAGGAAACCG+GGG | 0.634849 | 2_1:-73430430 | None:intergenic |
| CTTTGTCCCAACAGTCTCCG+GGG | 0.637109 | 2_1:+73430391 | Msa0223760:CDS |
| GACGATGAGACCAGTGCCTG+TGG | 0.653048 | 2_1:-73430345 | None:intergenic |
| TCAGTCAAACAATCGGACAC+AGG | 0.658052 | 2_1:-73432994 | None:intergenic |
| GGGAGCTTTGAGGAAACCGG+GGG | 0.663234 | 2_1:-73430429 | None:intergenic |
| TCATCAGCCGAGGGCCACAA+GGG | 0.664278 | 2_1:-73432003 | None:intergenic |
| AATTCCTGCTCTTCCCAAGG+AGG | 0.668223 | 2_1:+73432696 | Msa0223760:CDS |
| GATCTTAAAGGAAAACGGTG+TGG | 0.740295 | 2_1:+73430556 | Msa0223760:CDS |
| GGTTTCCTCAAAGCTCCCGG+CGG | 0.763935 | 2_1:+73430434 | Msa0223760:CDS |
| TGGCGCAAGATACTACACCA+AGG | 0.783785 | 2_1:+73432188 | Msa0223760:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAATAAATAAAATGATT+TGG | - | chr2_1:73430084-73430103 | None:intergenic | 10.0% |
| !!! | TTATTTATTTTTCGAATTAA+TGG | + | chr2_1:73430091-73430110 | Msa0223760:five_prime_UTR | 10.0% |
| !! | GAATAAAATTACTAAAATTA+AGG | - | chr2_1:73430125-73430144 | None:intergenic | 10.0% |
| !! | AAATTAACATAGATATAATA+TGG | - | chr2_1:73432971-73432990 | None:intergenic | 10.0% |
| !! | AAAAGAAGTAAATGATATAA+AGG | - | chr2_1:73430054-73430073 | None:intergenic | 15.0% |
| !! | TTCATGAAAATCATAAAAAA+GGG | - | chr2_1:73430152-73430171 | None:intergenic | 15.0% |
| !! | ATTCATGAAAATCATAAAAA+AGG | - | chr2_1:73430153-73430172 | None:intergenic | 15.0% |
| !!! | TTTTTATATGTTTAGTCTAA+TGG | + | chr2_1:73431114-73431133 | Msa0223760:intron | 15.0% |
| !!! | TTTTATATGTTTAGTCTAAT+GGG | + | chr2_1:73431115-73431134 | Msa0223760:intron | 15.0% |
| !!! | AATTTTGTAGATATGTAAAA+GGG | - | chr2_1:73431270-73431289 | None:intergenic | 15.0% |
| !!! | AAATTTTGTAGATATGTAAA+AGG | - | chr2_1:73431271-73431290 | None:intergenic | 15.0% |
| !! | TCTAGAAAAATAAAAAGAAT+TGG | - | chr2_1:73431577-73431596 | None:intergenic | 15.0% |
| !! | AATTAATATATAAATTCGCA+TGG | + | chr2_1:73431638-73431657 | Msa0223760:intron | 15.0% |
| !!! | AAACTTAATTTTAATTTGAC+AGG | + | chr2_1:73431855-73431874 | Msa0223760:intron | 15.0% |
| !!! | TGATATAAAGGAATGTATTT+TGG | - | chr2_1:73430042-73430061 | None:intergenic | 20.0% |
| !! | TAAATATTTATAGAAGGAGT+TGG | - | chr2_1:73430205-73430224 | None:intergenic | 20.0% |
| !!! | ACTTTTTTTTCAAACTTCAA+TGG | + | chr2_1:73430301-73430320 | Msa0223760:exon | 20.0% |
| !! | AAAACCATATCATATAGTAT+CGG | - | chr2_1:73430961-73430980 | None:intergenic | 20.0% |
| !!! | ATATGGTTTTGATTTTGTTT+TGG | + | chr2_1:73430971-73430990 | Msa0223760:intron | 20.0% |
| !! | TTACTATGTAGAGTAAATTA+CGG | + | chr2_1:73431024-73431043 | Msa0223760:intron | 20.0% |
| !! | ATCTAACATATTCAAAATTG+AGG | + | chr2_1:73431089-73431108 | Msa0223760:intron | 20.0% |
| !! | TACAAATTTATTAGGAAGAT+TGG | + | chr2_1:73431155-73431174 | Msa0223760:intron | 20.0% |
| !! | TCTACAAAATTTAGAAATGT+TGG | + | chr2_1:73431279-73431298 | Msa0223760:intron | 20.0% |
| !! | CAATTCGTCTATAAAATTAT+AGG | - | chr2_1:73431306-73431325 | None:intergenic | 20.0% |
| !! | AGAATAAAGAAATTACTACA+TGG | - | chr2_1:73431342-73431361 | None:intergenic | 20.0% |
| !! | AAACATTAAAGAAAATCAAC+TGG | - | chr2_1:73431452-73431471 | None:intergenic | 20.0% |
| !! | AATTTAAATAATGCAACTTG+TGG | + | chr2_1:73431596-73431615 | Msa0223760:intron | 20.0% |
| !! | TTGAATTTGATTATTACACA+TGG | - | chr2_1:73431720-73431739 | None:intergenic | 20.0% |
| !! | TTCTAAACAAAGATATTCTT+TGG | - | chr2_1:73432275-73432294 | None:intergenic | 20.0% |
| !! | ATCAATTACAAAAACTCAAA+CGG | - | chr2_1:73432577-73432596 | None:intergenic | 20.0% |
| !!! | TGATTTATTTTCATAATTGC+AGG | + | chr2_1:73432600-73432619 | Msa0223760:intron | 20.0% |
| !!! | TAATTATTTTCTTTTGCACT+AGG | - | chr2_1:73433042-73433061 | None:intergenic | 20.0% |
| !! | TAGTGCAAAAGAAAATAATT+AGG | + | chr2_1:73433041-73433060 | Msa0223760:three_prime_UTR | 20.0% |
| !!! | AAGGAATGTATTTTGGATTT+CGG | - | chr2_1:73430035-73430054 | None:intergenic | 25.0% |
| ! | TCGTGGTAAATATTTATAGA+AGG | - | chr2_1:73430211-73430230 | None:intergenic | 25.0% |
| ! | ATTAGTCCTAGATCTAATAA+TGG | - | chr2_1:73430916-73430935 | None:intergenic | 25.0% |
| ! | CTTCCTAATAAATTTGTACA+CGG | - | chr2_1:73431153-73431172 | None:intergenic | 25.0% |
| ! | ATATGTAAAAGGGTCTAATT+CGG | - | chr2_1:73431260-73431279 | None:intergenic | 25.0% |
| !!! | CTTTTTTTTTTCCTACGTAA+TGG | - | chr2_1:73431399-73431418 | None:intergenic | 25.0% |
| ! | CATTACGTAGGAAAAAAAAA+AGG | + | chr2_1:73431397-73431416 | Msa0223760:intron | 25.0% |
| ! | GTAGGAAAAAAAAAAGGATT+AGG | + | chr2_1:73431403-73431422 | Msa0223760:intron | 25.0% |
| !! | CATTGACTAAGTACATTATT+TGG | + | chr2_1:73431681-73431700 | Msa0223760:intron | 25.0% |
| ! | ATATTAGAAGTAAGTGCTTA+GGG | + | chr2_1:73432441-73432460 | Msa0223760:intron | 25.0% |
| ! | TCAATTACAAAAACTCAAAC+GGG | - | chr2_1:73432576-73432595 | None:intergenic | 25.0% |
| ! | ATGAAAAGGTGGAAAAAAAA+TGG | - | chr2_1:73432775-73432794 | None:intergenic | 25.0% |
| !!! | TTTTTTTTCCACCTTTTCAT+TGG | + | chr2_1:73432775-73432794 | Msa0223760:three_prime_UTR | 25.0% |
| ! | AAAACTCCCTAAACATTATT+TGG | - | chr2_1:73432898-73432917 | None:intergenic | 25.0% |
| !!! | TGTGCTAATGATTTTGAAAT+AGG | - | chr2_1:73433087-73433106 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGTTTCGGGTTTT+GGG | - | chr2_1:73430260-73430279 | None:intergenic | 30.0% |
| !!! | AAAAAAAGTGTTTCGGGTTT+TGG | - | chr2_1:73430261-73430280 | None:intergenic | 30.0% |
| !! | AGAGAGAAAAAAAGTGTTTC+GGG | - | chr2_1:73430267-73430286 | None:intergenic | 30.0% |
| !! | GAGAGAGAAAAAAAGTGTTT+CGG | - | chr2_1:73430268-73430287 | None:intergenic | 30.0% |
| !!! | TGGTTTTGATTTTGTTTTGG+TGG | + | chr2_1:73430974-73430993 | Msa0223760:intron | 30.0% |
| !!! | GGTTTTGATTTTGTTTTGGT+GGG | + | chr2_1:73430975-73430994 | Msa0223760:intron | 30.0% |
| GTACCGTGTACAAATTTATT+AGG | + | chr2_1:73431147-73431166 | Msa0223760:intron | 30.0% | |
| ! | TTTTGATCCAATTGTAAGAC+CGG | + | chr2_1:73431184-73431203 | Msa0223760:intron | 30.0% |
| ACGTAATGGTAACTATCAAA+TGG | - | chr2_1:73431385-73431404 | None:intergenic | 30.0% | |
| ! | TTTGATAGTTACCATTACGT+AGG | + | chr2_1:73431385-73431404 | Msa0223760:intron | 30.0% |
| ACTTAGTCAATGATGTAACA+CGG | - | chr2_1:73431673-73431692 | None:intergenic | 30.0% | |
| CATTGTTAAAATTACTGCCT+TGG | + | chr2_1:73431777-73431796 | Msa0223760:intron | 30.0% | |
| TAAATCACACAATTCAACCA+AGG | - | chr2_1:73431797-73431816 | None:intergenic | 30.0% | |
| ACCATTTGAGTCATTATGAA+TGG | + | chr2_1:73431816-73431835 | Msa0223760:intron | 30.0% | |
| CCATTTGAGTCATTATGAAT+GGG | + | chr2_1:73431817-73431836 | Msa0223760:intron | 30.0% | |
| CATTTGAGTCATTATGAATG+GGG | + | chr2_1:73431818-73431837 | Msa0223760:intron | 30.0% | |
| CAAGCAAATACTGAGTATTT+GGG | + | chr2_1:73432032-73432051 | Msa0223760:CDS | 30.0% | |
| AATACTGAGTATTTGGGAAA+AGG | + | chr2_1:73432038-73432057 | Msa0223760:CDS | 30.0% | |
| AACCAACAGTACAAAAAGTA+GGG | - | chr2_1:73432226-73432245 | None:intergenic | 30.0% | |
| CTAAGCACTTACTTCTAATA+TGG | - | chr2_1:73432442-73432461 | None:intergenic | 30.0% | |
| CATATTAGAAGTAAGTGCTT+AGG | + | chr2_1:73432440-73432459 | Msa0223760:intron | 30.0% | |
| AGTAGCTAATGTGTATTAAG+GGG | - | chr2_1:73432471-73432490 | None:intergenic | 30.0% | |
| GAGTAGCTAATGTGTATTAA+GGG | - | chr2_1:73432472-73432491 | None:intergenic | 30.0% | |
| TGAGTAGCTAATGTGTATTA+AGG | - | chr2_1:73432473-73432492 | None:intergenic | 30.0% | |
| ATACACATTAGCTACTCAAA+TGG | + | chr2_1:73432475-73432494 | Msa0223760:intron | 30.0% | |
| CAATTACAAAAACTCAAACG+GGG | - | chr2_1:73432575-73432594 | None:intergenic | 30.0% | |
| AGCAATCACAACTACTAAAA+AGG | + | chr2_1:73432669-73432688 | Msa0223760:CDS | 30.0% | |
| GCAATCACAACTACTAAAAA+GGG | + | chr2_1:73432670-73432689 | Msa0223760:CDS | 30.0% | |
| GGAAAGAAAAGTAAATATGC+AGG | - | chr2_1:73432754-73432773 | None:intergenic | 30.0% | |
| AAACATTATTTGGCCAAACT+CGG | - | chr2_1:73432888-73432907 | None:intergenic | 30.0% | |
| AGTTTGGCCAAATAATGTTT+AGG | + | chr2_1:73432888-73432907 | Msa0223760:three_prime_UTR | 30.0% | |
| GTTTGGCCAAATAATGTTTA+GGG | + | chr2_1:73432889-73432908 | Msa0223760:three_prime_UTR | 30.0% | |
| TTGAAATAGGTAAGATCTAC+TGG | - | chr2_1:73433074-73433093 | None:intergenic | 30.0% | |
| CAAAATCATTAGCACAAGAA+AGG | + | chr2_1:73433091-73433110 | Msa0223760:three_prime_UTR | 30.0% | |
| AGATACAAGAATGAGTTTCG+TGG | - | chr2_1:73430228-73430247 | None:intergenic | 35.0% | |
| GACTTCAAATTTGTGTGTTG+AGG | + | chr2_1:73430844-73430863 | Msa0223760:intron | 35.0% | |
| GCTACCGATACTATATGATA+TGG | + | chr2_1:73430954-73430973 | Msa0223760:intron | 35.0% | |
| !!! | TTTGATTTTGTTTTGGTGGG+TGG | + | chr2_1:73430978-73430997 | Msa0223760:intron | 35.0% |
| !!! | TTGATTTTGTTTTGGTGGGT+GGG | + | chr2_1:73430979-73430998 | Msa0223760:intron | 35.0% |
| GCTATTATTGTTGGATTCTG+AGG | - | chr2_1:73431475-73431494 | None:intergenic | 35.0% | |
| TCGTCGTATGCTATTATTGT+TGG | - | chr2_1:73431484-73431503 | None:intergenic | 35.0% | |
| GCTGGAGCAATTATATTTCA+TGG | + | chr2_1:73431543-73431562 | Msa0223760:intron | 35.0% | |
| AGCAATTATATTTCATGGCG+TGG | + | chr2_1:73431548-73431567 | Msa0223760:intron | 35.0% | |
| CCCATTCATAATGACTCAAA+TGG | - | chr2_1:73431820-73431839 | None:intergenic | 35.0% | |
| GCAAGCAAATACTGAGTATT+TGG | + | chr2_1:73432031-73432050 | Msa0223760:CDS | 35.0% | |
| CAAGGAGCAACTTCAAATTT+GGG | - | chr2_1:73432152-73432171 | None:intergenic | 35.0% | |
| ACAAGGAGCAACTTCAAATT+TGG | - | chr2_1:73432153-73432172 | None:intergenic | 35.0% | |
| ! | TAGGGACATAGATTTTACCT+TGG | - | chr2_1:73432208-73432227 | None:intergenic | 35.0% |
| CAACCAACAGTACAAAAAGT+AGG | - | chr2_1:73432227-73432246 | None:intergenic | 35.0% | |
| ! | GTCAATACAGTTGATACAAC+TGG | + | chr2_1:73432363-73432382 | Msa0223760:CDS | 35.0% |
| ATCAAAATCATTGCCGAGTT+TGG | + | chr2_1:73432872-73432891 | Msa0223760:three_prime_UTR | 35.0% | |
| AAACCACTCAGTCAAACAAT+CGG | - | chr2_1:73433004-73433023 | None:intergenic | 35.0% | |
| ! | ATAGGTAAGATCTACTGGTT+GGG | - | chr2_1:73433069-73433088 | None:intergenic | 35.0% |
| AATAGGTAAGATCTACTGGT+TGG | - | chr2_1:73433070-73433089 | None:intergenic | 35.0% | |
| ACTTCAATGGCTTCAAGCAA+TGG | + | chr2_1:73430314-73430333 | Msa0223760:exon | 40.0% | |
| !!! | ACCGTTTTCCTTTAAGATCC+CGG | - | chr2_1:73430555-73430574 | None:intergenic | 40.0% |
| GATCTTAAAGGAAAACGGTG+TGG | + | chr2_1:73430556-73430575 | Msa0223760:CDS | 40.0% | |
| ! | GAAGGTATAACCTTTGACCA+AGG | + | chr2_1:73430584-73430603 | Msa0223760:CDS | 40.0% |
| ! | TTAAGAAGCATGTCAGCACT+TGG | - | chr2_1:73430680-73430699 | None:intergenic | 40.0% |
| TGGGGTCCATTATTAGATCT+AGG | + | chr2_1:73430907-73430926 | Msa0223760:intron | 40.0% | |
| !! | TCATATAGTATCGGTAGCTC+TGG | - | chr2_1:73430952-73430971 | None:intergenic | 40.0% |
| !!! | TGATTTTGTTTTGGTGGGTG+GGG | + | chr2_1:73430980-73430999 | Msa0223760:intron | 40.0% |
| CTTGCAAGGACTAAGTGATA+TGG | - | chr2_1:73431050-73431069 | None:intergenic | 40.0% | |
| AGTCCTTGCAAGTCAAAAGA+AGG | + | chr2_1:73431058-73431077 | Msa0223760:intron | 40.0% | |
| !!! | GATCCTTCTTTTGACTTGCA+AGG | - | chr2_1:73431064-73431083 | None:intergenic | 40.0% |
| GTCCAATGGTAGAAACAAGT+GGG | + | chr2_1:73431210-73431229 | Msa0223760:intron | 40.0% | |
| TGTAAAAGGGTCTAATTCGG+CGG | - | chr2_1:73431257-73431276 | None:intergenic | 40.0% | |
| !! | CGTTGGTAGGTTTTATCAGT+GGG | + | chr2_1:73431507-73431526 | Msa0223760:intron | 40.0% |
| !! | GTTGGTAGGTTTTATCAGTG+GGG | + | chr2_1:73431508-73431527 | Msa0223760:intron | 40.0% |
| !! | TTGGTAGGTTTTATCAGTGG+GGG | + | chr2_1:73431509-73431528 | Msa0223760:intron | 40.0% |
| TGAGTCATTATGAATGGGGT+AGG | + | chr2_1:73431822-73431841 | Msa0223760:intron | 40.0% | |
| ! | CAGGCAAAAGTTTTCCACTA+TGG | + | chr2_1:73431874-73431893 | Msa0223760:intron | 40.0% |
| TCAAGCTTATGGATCCATAG+TGG | - | chr2_1:73431891-73431910 | None:intergenic | 40.0% | |
| TGGATCCATAAGCTTGATTG+TGG | + | chr2_1:73431894-73431913 | Msa0223760:CDS | 40.0% | |
| ! | TTCAAGTGTGCTGATCTACA+TGG | - | chr2_1:73431922-73431941 | None:intergenic | 40.0% |
| ATGTAGATCAGCACACTTGA+AGG | + | chr2_1:73431921-73431940 | Msa0223760:CDS | 40.0% | |
| GGTTAGGATCATAAGAGAGA+AGG | - | chr2_1:73431975-73431994 | None:intergenic | 40.0% | |
| ! | CAAGGTTAGTGATAATGAGC+TGG | + | chr2_1:73432071-73432090 | Msa0223760:CDS | 40.0% |
| !! | CAATTTTGTCACTTCCAGTG+AGG | - | chr2_1:73432101-73432120 | None:intergenic | 40.0% |
| ATGCTACTGCTTTGACATTG+TGG | + | chr2_1:73432124-73432143 | Msa0223760:CDS | 40.0% | |
| !!! | GTCCCTACTTTTTGTACTGT+TGG | + | chr2_1:73432221-73432240 | Msa0223760:intron | 40.0% |
| CATGGAAATTCTGGCAAAAG+GGG | - | chr2_1:73432323-73432342 | None:intergenic | 40.0% | |
| CCATGGAAATTCTGGCAAAA+GGG | - | chr2_1:73432324-73432343 | None:intergenic | 40.0% | |
| TCCATGGAAATTCTGGCAAA+AGG | - | chr2_1:73432325-73432344 | None:intergenic | 40.0% | |
| CTACTTGTCCATGGAAATTC+TGG | - | chr2_1:73432332-73432351 | None:intergenic | 40.0% | |
| TGAATGCATCTACTTGTCCA+TGG | - | chr2_1:73432341-73432360 | None:intergenic | 40.0% | |
| ! | TTCCTTTGTTGGTGCTCTAT+TGG | + | chr2_1:73432395-73432414 | Msa0223760:CDS | 40.0% |
| CTCAAGTTTGCAAATGCATG+TGG | + | chr2_1:73432646-73432665 | Msa0223760:CDS | 40.0% | |
| CAGGAATCTATGCTTTGATC+AGG | - | chr2_1:73432735-73432754 | None:intergenic | 40.0% | |
| CAAGAGCAACTCCAATGAAA+AGG | - | chr2_1:73432789-73432808 | None:intergenic | 40.0% | |
| !! | AGAAGGAGTTGGTAGAGAGA+AGG | - | chr2_1:73430194-73430213 | None:intergenic | 45.0% |
| AAACTAGGCGATGACGAGTT+CGG | + | chr2_1:73430518-73430537 | Msa0223760:CDS | 45.0% | |
| GCCGGGATCTTAAAGGAAAA+CGG | + | chr2_1:73430551-73430570 | Msa0223760:CDS | 45.0% | |
| CATAAACTCACGCTCTCCAT+CGG | - | chr2_1:73430645-73430664 | None:intergenic | 45.0% | |
| AGTTCGAGGTTGAGTTCTTC+AGG | - | chr2_1:73430704-73430723 | None:intergenic | 45.0% | |
| GTACAGATCTGATGAGTTCG+AGG | - | chr2_1:73430718-73430737 | None:intergenic | 45.0% | |
| !!! | GATTTTGTTTTGGTGGGTGG+GGG | + | chr2_1:73430981-73431000 | Msa0223760:intron | 45.0% |
| GATCCAATTGTAAGACCGGT+TGG | + | chr2_1:73431188-73431207 | Msa0223760:intron | 45.0% | |
| GTTTCTACCATTGGACCAAC+CGG | - | chr2_1:73431206-73431225 | None:intergenic | 45.0% | |
| GGTCCAATGGTAGAAACAAG+TGG | + | chr2_1:73431209-73431228 | Msa0223760:intron | 45.0% | |
| !! | CACCCACTTGTTTCTACCAT+TGG | - | chr2_1:73431215-73431234 | None:intergenic | 45.0% |
| ! | ATAGCATACGACGAAAGCGT+TGG | + | chr2_1:73431490-73431509 | Msa0223760:intron | 45.0% |
| !! | GCGTTGGTAGGTTTTATCAG+TGG | + | chr2_1:73431506-73431525 | Msa0223760:intron | 45.0% |
| !! | TGGTAGGTTTTATCAGTGGG+GGG | + | chr2_1:73431510-73431529 | Msa0223760:intron | 45.0% |
| TGGCTCCACAATCAAGCTTA+TGG | - | chr2_1:73431902-73431921 | None:intergenic | 45.0% | |
| ATCAGCACACTTGAAGGCAA+TGG | + | chr2_1:73431927-73431946 | Msa0223760:CDS | 45.0% | |
| ATGGAAGTTGCCAAAGAAGC+TGG | + | chr2_1:73431946-73431965 | Msa0223760:CDS | 45.0% | |
| GGAAAAGGCTGATCTGATCA+AGG | + | chr2_1:73432053-73432072 | Msa0223760:CDS | 45.0% | |
| AAGTTGCTCCTTGTCACTCT+TGG | + | chr2_1:73432159-73432178 | Msa0223760:CDS | 45.0% | |
| CATGTTCACCAAGAGTGACA+AGG | - | chr2_1:73432170-73432189 | None:intergenic | 45.0% | |
| CTTGTCACTCTTGGTGAACA+TGG | + | chr2_1:73432168-73432187 | Msa0223760:CDS | 45.0% | |
| ! | CCCTTTTGCCAGAATTTCCA+TGG | + | chr2_1:73432321-73432340 | Msa0223760:intron | 45.0% |
| ! | ACAGTTGATACAACTGGTGC+CGG | + | chr2_1:73432369-73432388 | Msa0223760:CDS | 45.0% |
| AGCACCAACAAAGGAATCAC+CGG | - | chr2_1:73432391-73432410 | None:intergenic | 45.0% | |
| !! | GGCCAAGATTGTTGATGATC+AGG | + | chr2_1:73432416-73432435 | Msa0223760:CDS | 45.0% |
| GGCCTGATCATCAACAATCT+TGG | - | chr2_1:73432421-73432440 | None:intergenic | 45.0% | |
| TTCAGTACATCCTCCTCCTT+GGG | - | chr2_1:73432712-73432731 | None:intergenic | 45.0% | |
| GAGCAACTCCAATGAAAAGG+TGG | - | chr2_1:73432786-73432805 | None:intergenic | 45.0% | |
| TCAGTCAAACAATCGGACAC+AGG | - | chr2_1:73432997-73433016 | None:intergenic | 45.0% | |
| TGTCCGATTGTTTGACTGAG+TGG | + | chr2_1:73432998-73433017 | Msa0223760:three_prime_UTR | 45.0% | |
| !! | AATAAAATTACTAAAATTAA+GGG | - | chr2_1:73430124-73430143 | None:intergenic | 5.0% |
| !!! | TTTCGGGTTTTGGGAGAGAG+AGG | - | chr2_1:73430251-73430270 | None:intergenic | 50.0% |
| ! | ACTGGTCTCATCGTCAGCTT+CGG | + | chr2_1:73430353-73430372 | Msa0223760:CDS | 50.0% |
| GACTTTGTCCCAACAGTCTC+CGG | + | chr2_1:73430389-73430408 | Msa0223760:CDS | 50.0% | |
| ACTTTGTCCCAACAGTCTCC+GGG | + | chr2_1:73430390-73430409 | Msa0223760:CDS | 50.0% | |
| TCCTAATCGGGAAACAGCGA+TGG | - | chr2_1:73430477-73430496 | None:intergenic | 50.0% | |
| ! | ATCGCTGTTTCCCGATTAGG+AGG | + | chr2_1:73430476-73430495 | Msa0223760:CDS | 50.0% |
| ATCGCCTAGTTTCCCGACAA+AGG | - | chr2_1:73430510-73430529 | None:intergenic | 50.0% | |
| AGTACGTGCACCTTGGTCAA+AGG | - | chr2_1:73430597-73430616 | None:intergenic | 50.0% | |
| TTTGTTACTCTACGCGCCGA+TGG | + | chr2_1:73430626-73430645 | Msa0223760:CDS | 50.0% | |
| CGACATTGACATGTCAGCGT+TGG | + | chr2_1:73430871-73430890 | Msa0223760:intron | 50.0% | |
| !! | TCAGCGTTGGTGTGTTCATG+TGG | + | chr2_1:73430884-73430903 | Msa0223760:intron | 50.0% |
| CGTTGGTGTGTTCATGTGGT+GGG | + | chr2_1:73430888-73430907 | Msa0223760:intron | 50.0% | |
| GTTGGTGTGTTCATGTGGTG+GGG | + | chr2_1:73430889-73430908 | Msa0223760:intron | 50.0% | |
| GGACCAACCGGTCTTACAAT+TGG | - | chr2_1:73431194-73431213 | None:intergenic | 50.0% | |
| ! | TGTAAGACCGGTTGGTCCAA+TGG | + | chr2_1:73431196-73431215 | Msa0223760:intron | 50.0% |
| GGGTGCATGATGCTCATTTG+TGG | + | chr2_1:73431230-73431249 | Msa0223760:intron | 50.0% | |
| !! | CATACGACGAAAGCGTTGGT+AGG | + | chr2_1:73431494-73431513 | Msa0223760:intron | 50.0% |
| !! | AGGTTTTATCAGTGGGGGGT+TGG | + | chr2_1:73431514-73431533 | Msa0223760:intron | 50.0% |
| !! | GGTTTTATCAGTGGGGGGTT+GGG | + | chr2_1:73431515-73431534 | Msa0223760:intron | 50.0% |
| AATGAGCTGGAGTTCCTCAC+TGG | + | chr2_1:73432084-73432103 | Msa0223760:CDS | 50.0% | |
| TGGCGCAAGATACTACACCA+AGG | + | chr2_1:73432188-73432207 | Msa0223760:CDS | 50.0% | |
| GAAATTCTGGCAAAAGGGGC+AGG | - | chr2_1:73432319-73432338 | None:intergenic | 50.0% | |
| ! | GGCCAATAGAGCACCAACAA+AGG | - | chr2_1:73432400-73432419 | None:intergenic | 50.0% |
| AGCAATTCCTGCTCTTCCCA+AGG | + | chr2_1:73432693-73432712 | Msa0223760:CDS | 50.0% | |
| AATTCCTGCTCTTCCCAAGG+AGG | + | chr2_1:73432696-73432715 | Msa0223760:CDS | 50.0% | |
| GTTCAGTACATCCTCCTCCT+TGG | - | chr2_1:73432713-73432732 | None:intergenic | 50.0% | |
| AGCAATGGCATCCCAACCAC+AGG | + | chr2_1:73430329-73430348 | Msa0223760:CDS | 55.0% | |
| TGAGACCAGTGCCTGTGGTT+GGG | - | chr2_1:73430343-73430362 | None:intergenic | 55.0% | |
| ATGAGACCAGTGCCTGTGGT+TGG | - | chr2_1:73430344-73430363 | None:intergenic | 55.0% | |
| CTTTGTCCCAACAGTCTCCG+GGG | + | chr2_1:73430391-73430410 | Msa0223760:CDS | 55.0% | |
| ! | GCCATCGCTGTTTCCCGATT+AGG | + | chr2_1:73430473-73430492 | Msa0223760:CDS | 55.0% |
| AGGCGGCTTTGCCTCCTAAT+CGG | - | chr2_1:73430490-73430509 | None:intergenic | 55.0% | |
| GCCTAGTTTCCCGACAAAGG+CGG | - | chr2_1:73430507-73430526 | None:intergenic | 55.0% | |
| CATGCTCGCCGGGATCTTAA+AGG | + | chr2_1:73430544-73430563 | Msa0223760:CDS | 55.0% | |
| GAAAACGGTGTGGTCGCAGA+AGG | + | chr2_1:73430566-73430585 | Msa0223760:CDS | 55.0% | |
| CCAAAGCAGTACGTGCACCT+TGG | - | chr2_1:73430604-73430623 | None:intergenic | 55.0% | |
| CCAAGGTGCACGTACTGCTT+TGG | + | chr2_1:73430601-73430620 | Msa0223760:CDS | 55.0% | |
| ! | GCGTTGGTGTGTTCATGTGG+TGG | + | chr2_1:73430887-73430906 | Msa0223760:intron | 55.0% |
| ! | TTTGGTGGGTGGGGGTTGTT+TGG | + | chr2_1:73430989-73431008 | Msa0223760:intron | 55.0% |
| GAGAAGGCAGCCAGCTTCTT+TGG | - | chr2_1:73431959-73431978 | None:intergenic | 55.0% | |
| TTGCGAGCTTCATCAGCCGA+GGG | - | chr2_1:73432015-73432034 | None:intergenic | 55.0% | |
| !! | GGTGCCGGTGATTCCTTTGT+TGG | + | chr2_1:73432384-73432403 | Msa0223760:CDS | 55.0% |
| GACGATGAGACCAGTGCCTG+TGG | - | chr2_1:73430348-73430367 | None:intergenic | 60.0% | |
| !! | GGGAGCTTTGAGGAAACCGG+GGG | - | chr2_1:73430432-73430451 | None:intergenic | 60.0% |
| !! | CGGGAGCTTTGAGGAAACCG+GGG | - | chr2_1:73430433-73430452 | None:intergenic | 60.0% |
| !! | CCGGGAGCTTTGAGGAAACC+GGG | - | chr2_1:73430434-73430453 | None:intergenic | 60.0% |
| CCCGGTTTCCTCAAAGCTCC+CGG | + | chr2_1:73430431-73430450 | Msa0223760:CDS | 60.0% | |
| !! | GCCGGGAGCTTTGAGGAAAC+CGG | - | chr2_1:73430435-73430454 | None:intergenic | 60.0% |
| GGTTTCCTCAAAGCTCCCGG+CGG | + | chr2_1:73430434-73430453 | Msa0223760:CDS | 60.0% | |
| ACAGCGATGGCAACGTTCGC+TGG | - | chr2_1:73430464-73430483 | None:intergenic | 60.0% | |
| GGCGGCTTTGCCTCCTAATC+GGG | - | chr2_1:73430489-73430508 | None:intergenic | 60.0% | |
| GGAGGCAAAGCCGCCTTTGT+CGG | + | chr2_1:73430494-73430513 | Msa0223760:CDS | 60.0% | |
| GAGGCAAAGCCGCCTTTGTC+GGG | + | chr2_1:73430495-73430514 | Msa0223760:CDS | 60.0% | |
| GCCGCCTTTGTCGGGAAACT+AGG | + | chr2_1:73430503-73430522 | Msa0223760:CDS | 60.0% | |
| GAGTTCGGTCACATGCTCGC+CGG | + | chr2_1:73430533-73430552 | Msa0223760:CDS | 60.0% | |
| AGTTCGGTCACATGCTCGCC+GGG | + | chr2_1:73430534-73430553 | Msa0223760:CDS | 60.0% | |
| GTGGGTGGGGGTTGTTTGGT+TGG | + | chr2_1:73430993-73431012 | Msa0223760:intron | 60.0% | |
| CACAAGGGTAGGCGGAGGTT+AGG | - | chr2_1:73431991-73432010 | None:intergenic | 60.0% | |
| CTAACCTCCGCCTACCCTTG+TGG | + | chr2_1:73431989-73432008 | Msa0223760:CDS | 60.0% | |
| TCATCAGCCGAGGGCCACAA+GGG | - | chr2_1:73432006-73432025 | None:intergenic | 60.0% | |
| TTCATCAGCCGAGGGCCACA+AGG | - | chr2_1:73432007-73432026 | None:intergenic | 60.0% | |
| CTTGCGAGCTTCATCAGCCG+AGG | - | chr2_1:73432016-73432035 | None:intergenic | 60.0% | |
| TCCTGCTCTTCCCAAGGAGG+AGG | + | chr2_1:73432699-73432718 | Msa0223760:CDS | 60.0% | |
| TCCTCCTCCTTGGGAAGAGC+AGG | - | chr2_1:73432703-73432722 | None:intergenic | 60.0% | |
| GGCATCCCAACCACAGGCAC+TGG | + | chr2_1:73430335-73430354 | Msa0223760:CDS | 65.0% | |
| GGGAGACCCCGGAGACTGTT+GGG | - | chr2_1:73430400-73430419 | None:intergenic | 65.0% | |
| AGGGAGACCCCGGAGACTGT+TGG | - | chr2_1:73430401-73430420 | None:intergenic | 65.0% | |
| GAAACCGGGGGCTTCTGCGA+GGG | - | chr2_1:73430420-73430439 | None:intergenic | 65.0% | |
| AACGTTCGCTGGTGCACCGC+CGG | - | chr2_1:73430453-73430472 | None:intergenic | 65.0% | |
| GTGGGGGGTTGGGATTTCGC+TGG | + | chr2_1:73431525-73431544 | Msa0223760:intron | 65.0% | |
| GGCTTCTGCGAGGGAGACCC+CGG | - | chr2_1:73430411-73430430 | None:intergenic | 70.0% | |
| GTCTCCCTCGCAGAAGCCCC+CGG | + | chr2_1:73430413-73430432 | Msa0223760:CDS | 70.0% | |
| GGAAACCGGGGGCTTCTGCG+AGG | - | chr2_1:73430421-73430440 | None:intergenic | 70.0% | |
| GTGCACCGCCGGGAGCTTTG+AGG | - | chr2_1:73430442-73430461 | None:intergenic | 70.0% | |
| ACGTTCGCTGGTGCACCGCC+GGG | - | chr2_1:73430452-73430471 | None:intergenic | 70.0% | |
| AGGGCCACAAGGGTAGGCGG+AGG | - | chr2_1:73431996-73432015 | None:intergenic | 70.0% | |
| CCGAGGGCCACAAGGGTAGG+CGG | - | chr2_1:73431999-73432018 | None:intergenic | 70.0% | |
| CCGCCTACCCTTGTGGCCCT+CGG | + | chr2_1:73431996-73432015 | Msa0223760:CDS | 70.0% | |
| CAGCCGAGGGCCACAAGGGT+AGG | - | chr2_1:73432002-73432021 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 73430032 | 73433129 | 73430032 | ID=Msa0223760;Name=Msa0223760 |
| chr2_1 | mRNA | 73430032 | 73433129 | 73430032 | ID=Msa0223760-mRNA-1;Parent=Msa0223760;Name=Msa0223760-mRNA-1;_AED=0.06;_eAED=0.06;_QI=288|1|1|1|1|1|4|382|329 |
| chr2_1 | exon | 73430032 | 73430733 | 73430032 | ID=Msa0223760-mRNA-1:exon:21534;Parent=Msa0223760-mRNA-1 |
| chr2_1 | exon | 73431877 | 73432209 | 73431877 | ID=Msa0223760-mRNA-1:exon:21535;Parent=Msa0223760-mRNA-1 |
| chr2_1 | exon | 73432333 | 73432449 | 73432333 | ID=Msa0223760-mRNA-1:exon:21536;Parent=Msa0223760-mRNA-1 |
| chr2_1 | exon | 73432622 | 73433129 | 73432622 | ID=Msa0223760-mRNA-1:exon:21537;Parent=Msa0223760-mRNA-1 |
| chr2_1 | five_prime_UTR | 73430032 | 73430319 | 73430032 | ID=Msa0223760-mRNA-1:five_prime_utr;Parent=Msa0223760-mRNA-1 |
| chr2_1 | CDS | 73430320 | 73430733 | 73430320 | ID=Msa0223760-mRNA-1:cds;Parent=Msa0223760-mRNA-1 |
| chr2_1 | CDS | 73431877 | 73432209 | 73431877 | ID=Msa0223760-mRNA-1:cds;Parent=Msa0223760-mRNA-1 |
| chr2_1 | CDS | 73432333 | 73432449 | 73432333 | ID=Msa0223760-mRNA-1:cds;Parent=Msa0223760-mRNA-1 |
| chr2_1 | CDS | 73432622 | 73432747 | 73432622 | ID=Msa0223760-mRNA-1:cds;Parent=Msa0223760-mRNA-1 |
| chr2_1 | three_prime_UTR | 73432748 | 73433129 | 73432748 | ID=Msa0223760-mRNA-1:three_prime_utr;Parent=Msa0223760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
