AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0703150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703150 MtrunA17_Chr8g0381171 92.446 278 17 1 13 290 1 274 0.0 519
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703150 AT3G26085.4 61.826 241 85 2 57 290 29 269 3.13e-102 300
Msa0703150 AT3G26085.1 61.826 241 85 2 57 290 50 290 6.97e-102 300
Msa0703150 AT3G26085.3 60.924 238 89 1 57 290 73 310 1.56e-101 300
Msa0703150 AT3G26085.2 60.924 238 89 1 57 290 82 319 2.00e-101 300

Find 71 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCCCTCTTGGATTTCT+TGG 0.137206 4_4:-74991905 None:intergenic
CGGCGCAGTTCTGCCACTTT+TGG 0.146735 4_4:+74995179 Msa0703150:CDS
CTGGTCTCATTGCTGCTTTC+GGG 0.149947 4_4:+74992067 Msa0703150:CDS
TGTTCAAAATGACAACTTAT+TGG 0.182949 4_4:+74991963 Msa0703150:CDS
TCTGGTCTCATTGCTGCTTT+CGG 0.246146 4_4:+74992066 Msa0703150:CDS
ACCTTTGTTGGTCTTGTATA+CGG 0.257492 4_4:+74995446 Msa0703150:CDS
GCGGTAGCTGCTTTAATCTT+TGG 0.265287 4_4:+74995222 Msa0703150:CDS
CATCTAAGTTACCTGTCTAT+TGG 0.300999 4_4:-74993340 None:intergenic
CCTTAGCTCTCTCCAACCTT+TGG 0.311835 4_4:+74995012 Msa0703150:CDS
TAATTTGCATGACATAGTTT+TGG 0.319065 4_4:-74995802 None:intergenic
CAAGCTTGCATACTGACTTC+TGG 0.334409 4_4:+74992048 Msa0703150:CDS
TAATGTTGTTATTGCCTGTT+AGG 0.340867 4_4:+74995883 Msa0703150:three_prime_UTR
GCCATAAAAGCCCTCCTATC+AGG 0.343970 4_4:-74995529 None:intergenic
AGCTTGAAGCACAGCACTCC+TGG 0.355918 4_4:-74992031 None:intergenic
TGTTTCAGGGCAACCTTTGT+TGG 0.366022 4_4:+74995434 Msa0703150:intron
ATGCTAACCCTATTCCTTCC+AGG 0.372799 4_4:+74992013 Msa0703150:CDS
ACAGCACTCCTGGAAGGAAT+AGG 0.375154 4_4:-74992021 None:intergenic
TCTCGCACACTCTCAATTCC+TGG 0.384312 4_4:+74991461 Msa0703150:CDS
ACATTTGCAAACAGATCTCT+TGG 0.391180 4_4:-74995687 None:intergenic
GAAACTATTCCTTTGCCATC+TGG 0.393537 4_4:+74995268 Msa0703150:CDS
TGGCATCTTGAGATGATTAC+AGG 0.394200 4_4:+74993240 Msa0703150:CDS
TGTATCAGGTCCTTCCCTCT+TGG 0.395014 4_4:-74991914 None:intergenic
TAAATTTAACTAATCCTAAC+AGG 0.408320 4_4:-74995897 None:intergenic
AACCTCCCCGTCGATGGGTT+TGG 0.409024 4_4:+74995631 Msa0703150:three_prime_UTR
AATAGAAGGATTGCCGGTCT+TGG 0.411237 4_4:+74992421 Msa0703150:CDS
TCTCATGTTGCGTCAATAGA+AGG 0.415124 4_4:+74992407 Msa0703150:CDS
TGGTGTTATATAGTATGATT+CGG 0.432403 4_4:+74995651 Msa0703150:three_prime_UTR
TGCGTCAATAGAAGGATTGC+CGG 0.432824 4_4:+74992415 Msa0703150:CDS
CAGCACTCCTGGAAGGAATA+GGG 0.442213 4_4:-74992020 None:intergenic
CATGCAGTGAACAACCTGAT+AGG 0.453687 4_4:+74995515 Msa0703150:CDS
CTCTAGCCTTGCAGTTCCCA+TGG 0.454900 4_4:+74995487 Msa0703150:CDS
TCACTAGACTCAGCAAAATC+CGG 0.479458 4_4:-74993312 None:intergenic
GAGAGATCTACAGATGTATC+AGG 0.496866 4_4:-74991928 None:intergenic
GTCCAGTTCATTCCCAAAAG+TGG 0.502847 4_4:-74995192 None:intergenic
GCTATTTGCTATTGAAGACT+TGG 0.510606 4_4:+74993289 Msa0703150:CDS
CGGCAATATAATCCAAAGGT+TGG 0.521359 4_4:-74995024 None:intergenic
TAGTGAAGCAGCCAATAGAC+AGG 0.526883 4_4:+74993329 Msa0703150:CDS
TTATTCAACCTCCCCGTCGA+TGG 0.527644 4_4:+74995625 Msa0703150:three_prime_UTR
TATTCAACCTCCCCGTCGAT+GGG 0.537338 4_4:+74995626 Msa0703150:three_prime_UTR
GTTCACTGCATGAGAAGCCA+TGG 0.542051 4_4:-74995504 None:intergenic
GGGTTAGCATTCTCAACAAG+TGG 0.542305 4_4:-74992000 None:intergenic
TTTCGGGACAGTGATTCGCC+AGG 0.545417 4_4:+74992083 Msa0703150:CDS
TTTGCTATTGAAGACTTGGC+CGG 0.547509 4_4:+74993293 Msa0703150:CDS
TCTGTAGAGCAGTCCAAGAC+CGG 0.556859 4_4:-74992434 None:intergenic
TTATCTATTGAGATGGAAGA+TGG 0.561734 4_4:-74995587 None:intergenic
ATAACACCAAACCCATCGAC+GGG 0.561879 4_4:-74995637 None:intergenic
GCAGTGAACAACCTGATAGG+AGG 0.562292 4_4:+74995518 Msa0703150:CDS
TAGCGAGTTATCTATTGAGA+TGG 0.563810 4_4:-74995594 None:intergenic
ACTGTGAGGGAGAGTGATGA+AGG 0.564456 4_4:-74991527 None:intergenic
GCCAAGAAATCCAAGAGGGA+AGG 0.567102 4_4:+74991904 Msa0703150:CDS
TATAACACCAAACCCATCGA+CGG 0.583976 4_4:-74995638 None:intergenic
TAGTATCATTCATTCATACA+TGG 0.590058 4_4:+74991426 Msa0703150:CDS
GATAGTACTACAGCAACTCC+AGG 0.598640 4_4:-74991479 None:intergenic
CCAAAGGTTGGAGAGAGCTA+AGG 0.600412 4_4:-74995012 None:intergenic
TGAAGCACAGCACTCCTGGA+AGG 0.602584 4_4:-74992027 None:intergenic
CAGTGAACAACCTGATAGGA+GGG 0.604035 4_4:+74995519 Msa0703150:CDS
TCCGTATACAAGACCAACAA+AGG 0.604699 4_4:-74995447 None:intergenic
GGTAGCAGTAGAGTATGCTG+TGG 0.605563 4_4:-74991506 None:intergenic
GTGTGATTAACTAACTGTGA+GGG 0.617765 4_4:-74991540 None:intergenic
CATGGGAACTGCAAGGCTAG+AGG 0.618400 4_4:-74995486 None:intergenic
TTCACTGCATGAGAAGCCAT+GGG 0.629050 4_4:-74995503 None:intergenic
GGACATGCACCAGATGGCAA+AGG 0.641457 4_4:-74995277 None:intergenic
AATTCCAGGCAAAACTGCAA+CGG 0.649711 4_4:-74995044 None:intergenic
GAGAAGCCATGGGAACTGCA+AGG 0.658768 4_4:-74995493 None:intergenic
AATGAACTGGACGAGTATTG+CGG 0.660794 4_4:+74995203 Msa0703150:CDS
GCAACGGCAATATAATCCAA+AGG 0.664800 4_4:-74995028 None:intergenic
GTAGCAGTAGAGTATGCTGT+GGG 0.666381 4_4:-74991505 None:intergenic
CACCAAACCCATCGACGGGG+AGG 0.673488 4_4:-74995633 None:intergenic
AGTGTGCGAGAGATAAAGCA+CGG 0.676363 4_4:-74991449 None:intergenic
TAACACCAAACCCATCGACG+GGG 0.756934 4_4:-74995636 None:intergenic
AAAGTGGCAGAACTGCGCCG+CGG 0.783792 4_4:-74995176 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTAT+AGG + chr4_4:74991856-74991875 Msa0703150:intron 0.0%
!!! TTTTTTTTTTTTTTTTTATA+GGG + chr4_4:74991857-74991876 Msa0703150:intron 0.0%
!! ATAAAAATAGAAATTAAAGA+AGG - chr4_4:74991572-74991591 None:intergenic 10.0%
!!! AAATTTTAGTTATCTATTTA+TGG - chr4_4:74995832-74995851 None:intergenic 10.0%
!! AAGTTATTATCAAAAGTTTA+TGG + chr4_4:74991717-74991736 Msa0703150:intron 15.0%
!! AGTTATTATCAAAAGTTTAT+GGG + chr4_4:74991718-74991737 Msa0703150:intron 15.0%
!! AAAAAAAAATCAATTTCACT+AGG - chr4_4:74991837-74991856 None:intergenic 15.0%
!!! AATTATTATTAGAGTTTGTT+AGG - chr4_4:74993520-74993539 None:intergenic 15.0%
!!! TAGAATATTTCATGATTTTA+GGG - chr4_4:74993592-74993611 None:intergenic 15.0%
!!! TTAGAATATTTCATGATTTT+AGG - chr4_4:74993593-74993612 None:intergenic 15.0%
!! TAAAATATGAATGAATAGTT+TGG + chr4_4:74994681-74994700 Msa0703150:intron 15.0%
!! TTTGAATATTATATAGTAGA+TGG + chr4_4:74994851-74994870 Msa0703150:intron 15.0%
!! TGATGAAAAATAAATAAGAA+CGG - chr4_4:74995110-74995129 None:intergenic 15.0%
!! ATATTATTGTTTATGTTTCA+GGG + chr4_4:74995421-74995440 Msa0703150:intron 15.0%
!!! CTACATTTTATCTTAAAAAA+TGG - chr4_4:74995740-74995759 None:intergenic 15.0%
!!! CATTTTTTAAGATAAAATGT+AGG + chr4_4:74995738-74995757 Msa0703150:three_prime_UTR 15.0%
!! AATAGACAATACAATAGAAT+TGG - chr4_4:74992146-74992165 None:intergenic 20.0%
!! CAATAAACATACATTTCATT+TGG + chr4_4:74992188-74992207 Msa0703150:intron 20.0%
!!! ATGTTGTACTTTTAAGTTTA+TGG - chr4_4:74992719-74992738 None:intergenic 20.0%
!! AATTATTAAGAACATTTCAG+AGG - chr4_4:74992744-74992763 None:intergenic 20.0%
!!! TCTGAAATGTTCTTAATAAT+TGG + chr4_4:74992743-74992762 Msa0703150:intron 20.0%
!! ATGCTATGATATATTTATTG+TGG + chr4_4:74992779-74992798 Msa0703150:intron 20.0%
!! TGCTATGATATATTTATTGT+GGG + chr4_4:74992780-74992799 Msa0703150:intron 20.0%
!!! ATATTTCACTGTTGATTTTA+TGG - chr4_4:74993370-74993389 None:intergenic 20.0%
!!! ATCTATTAAGGTTAGTTATT+GGG + chr4_4:74993627-74993646 Msa0703150:intron 20.0%
!!! TCCTTTTATTTCTTATTCAT+TGG + chr4_4:74993968-74993987 Msa0703150:intron 20.0%
!! ACCAATGAATAAGAAATAAA+AGG - chr4_4:74993972-74993991 None:intergenic 20.0%
!!! AATATTTTGTTTTCCAAATC+AGG + chr4_4:74994988-74995007 Msa0703150:intron 20.0%
!!! AATCCAATTTTCAGAAATTA+GGG - chr4_4:74995301-74995320 None:intergenic 20.0%
!! AATATGATTCTAATTAGATC+AGG - chr4_4:74995406-74995425 None:intergenic 20.0%
!! CATATTATTGTTTATGTTTC+AGG + chr4_4:74995420-74995439 Msa0703150:intron 20.0%
!! AACAAAAAAATTAGATCACT+TGG + chr4_4:74995854-74995873 Msa0703150:three_prime_UTR 20.0%
!! TAAATTTAACTAATCCTAAC+AGG - chr4_4:74995900-74995919 None:intergenic 20.0%
!!! AATTTACCATTTTCCAAAAA+TGG + chr4_4:74995914-74995933 Msa0703150:three_prime_UTR 20.0%
! TAGTATCATTCATTCATACA+TGG + chr4_4:74991426-74991445 Msa0703150:CDS 25.0%
!!! TTAAGTTGAATTACATGACA+CGG - chr4_4:74991600-74991619 None:intergenic 25.0%
! TGTTCAAAATGACAACTTAT+TGG + chr4_4:74991963-74991982 Msa0703150:CDS 25.0%
! TACTGAAATAGTTTCTATGA+TGG - chr4_4:74992214-74992233 None:intergenic 25.0%
! ACTATTTCAGTATATTAGCA+AGG + chr4_4:74992222-74992241 Msa0703150:intron 25.0%
! GTGAAAATTATTGAACATGA+AGG + chr4_4:74992670-74992689 Msa0703150:intron 25.0%
!!! TGTACTTTTAAGTTTATGGT+TGG - chr4_4:74992715-74992734 None:intergenic 25.0%
! AATACATTAGAAGTCAATTC+AGG - chr4_4:74992879-74992898 None:intergenic 25.0%
! TACAGAAGCTATAACAAAAT+TGG - chr4_4:74992965-74992984 None:intergenic 25.0%
! TATAATTCTGTAATCACCAT+TGG - chr4_4:74993106-74993125 None:intergenic 25.0%
!! CTTTTCTGTTATAAAAGAGA+GGG - chr4_4:74993567-74993586 None:intergenic 25.0%
!! ACTTTTCTGTTATAAAAGAG+AGG - chr4_4:74993568-74993587 None:intergenic 25.0%
! CTAACCTTAATAGATGAAAT+AGG - chr4_4:74993622-74993641 None:intergenic 25.0%
!! CATCTATTAAGGTTAGTTAT+TGG + chr4_4:74993626-74993645 Msa0703150:intron 25.0%
! ATGTGAGTTTCAGATTTAAA+AGG - chr4_4:74993790-74993809 None:intergenic 25.0%
!!! TTTTAAATCTGAAACTCACA+TGG + chr4_4:74993789-74993808 Msa0703150:intron 25.0%
! ATAAGAAATAAAAGGAAGTG+AGG - chr4_4:74993964-74993983 None:intergenic 25.0%
! TCAAAGATAAAACACTTACT+CGG - chr4_4:74994140-74994159 None:intergenic 25.0%
! ATTCATAGAAAATCGAATCA+CGG + chr4_4:74994238-74994257 Msa0703150:intron 25.0%
! ACTCATCAATTCAAAACAAA+AGG + chr4_4:74994313-74994332 Msa0703150:intron 25.0%
!!! ATTCAATAAGTGCTACTTTA+TGG - chr4_4:74994660-74994679 None:intergenic 25.0%
! AACGAAACTAGAAATAATTC+CGG + chr4_4:74994903-74994922 Msa0703150:intron 25.0%
! CAGAGTTTAGAAAACAAAAA+TGG - chr4_4:74994966-74994985 None:intergenic 25.0%
! TAAAACAGATTTACTCTTCT+TGG + chr4_4:74995075-74995094 Msa0703150:intron 25.0%
!! CAATCCAATTTTCAGAAATT+AGG - chr4_4:74995302-74995321 None:intergenic 25.0%
! AACAACACAACAATGAAAAA+TGG - chr4_4:74995381-74995400 None:intergenic 25.0%
!!! TGGTGTTATATAGTATGATT+CGG + chr4_4:74995651-74995670 Msa0703150:three_prime_UTR 25.0%
!!! TAATTTGCATGACATAGTTT+TGG - chr4_4:74995805-74995824 None:intergenic 25.0%
! AAAAATTAGATCACTTGGTT+TGG + chr4_4:74995859-74995878 Msa0703150:three_prime_UTR 25.0%
! TAAGTTGAATTACATGACAC+GGG - chr4_4:74991599-74991618 None:intergenic 30.0%
AAATGCAACAAAGTTGGAAA+CGG - chr4_4:74992121-74992140 None:intergenic 30.0%
TTGGAAAAATGCAACAAAGT+TGG - chr4_4:74992127-74992146 None:intergenic 30.0%
!!! ATCTTGTTTTTACAACTTGC+AGG + chr4_4:74992382-74992401 Msa0703150:intron 30.0%
TAAACATTGTCTCAAACATG+TGG + chr4_4:74992568-74992587 Msa0703150:intron 30.0%
! TGAAATGCACATGACAATTT+TGG + chr4_4:74992627-74992646 Msa0703150:intron 30.0%
!! GACAATTTTGGATTTTCAAG+TGG + chr4_4:74992639-74992658 Msa0703150:intron 30.0%
TGTTCTTAATAATTGGTGTG+AGG + chr4_4:74992750-74992769 Msa0703150:intron 30.0%
ATCCAAACTATCTTGTATTC+TGG + chr4_4:74992833-74992852 Msa0703150:intron 30.0%
TATTGTTCCCAAAGTTAGTT+AGG + chr4_4:74992918-74992937 Msa0703150:intron 30.0%
AACTAAGCCTAACTAACTTT+GGG - chr4_4:74992928-74992947 None:intergenic 30.0%
GACTCCTATTTCATCTATTA+AGG + chr4_4:74993615-74993634 Msa0703150:intron 30.0%
!!! TATGATAGAACACTGGTTTT+TGG - chr4_4:74993659-74993678 None:intergenic 30.0%
ACAATTACCTTAGGTTTAAG+AGG - chr4_4:74993885-74993904 None:intergenic 30.0%
CTACTCATAACAATTACCTT+AGG - chr4_4:74993894-74993913 None:intergenic 30.0%
TACAGTTAACAGAGAAAACT+GGG - chr4_4:74994024-74994043 None:intergenic 30.0%
TTACAGTTAACAGAGAAAAC+TGG - chr4_4:74994025-74994044 None:intergenic 30.0%
AAAGAACCAAAACTAACTGA+TGG - chr4_4:74994062-74994081 None:intergenic 30.0%
TAGTTAGTATTTGCAAGCTT+CGG + chr4_4:74994162-74994181 Msa0703150:intron 30.0%
TCTATGAATTCTCGTGAAAT+AGG - chr4_4:74994227-74994246 None:intergenic 30.0%
TGCACAAGACATTAAAATGA+CGG + chr4_4:74994357-74994376 Msa0703150:intron 30.0%
AAAGCTTTCGTTACCATTAA+CGG + chr4_4:74994455-74994474 Msa0703150:intron 30.0%
TTTAGTAACTCGTAACTGTT+GGG - chr4_4:74994713-74994732 None:intergenic 30.0%
ATTTAGTAACTCGTAACTGT+TGG - chr4_4:74994714-74994733 None:intergenic 30.0%
! TGTCCCTAATTTCTGAAAAT+TGG + chr4_4:74995295-74995314 Msa0703150:intron 30.0%
TTATCTATTGAGATGGAAGA+TGG - chr4_4:74995590-74995609 None:intergenic 30.0%
! TAATGTTGTTATTGCCTGTT+AGG + chr4_4:74995883-74995902 Msa0703150:three_prime_UTR 30.0%
GTGTGATTAACTAACTGTGA+GGG - chr4_4:74991543-74991562 None:intergenic 35.0%
AGTGTGATTAACTAACTGTG+AGG - chr4_4:74991544-74991563 None:intergenic 35.0%
AAGTTGAATTACATGACACG+GGG - chr4_4:74991598-74991617 None:intergenic 35.0%
! TTTTGCCAAGAAATCCAAGA+GGG + chr4_4:74991900-74991919 Msa0703150:CDS 35.0%
AAGGAGAGTTAGTTGAATTC+AGG + chr4_4:74992241-74992260 Msa0703150:intron 35.0%
TTTGGCTGGCATTAAGAAAT+CGG - chr4_4:74992289-74992308 None:intergenic 35.0%
TCTTGTGTAAAACCAAGCTT+TGG - chr4_4:74992307-74992326 None:intergenic 35.0%
CTTGTGTATGCAAATTTCCA+CGG - chr4_4:74992337-74992356 None:intergenic 35.0%
AACTTGCAAAACAGAAAAGC+AGG - chr4_4:74992492-74992511 None:intergenic 35.0%
ACCATAAAGCAATACTGTTG+TGG + chr4_4:74992595-74992614 Msa0703150:intron 35.0%
CCATAAAGCAATACTGTTGT+GGG + chr4_4:74992596-74992615 Msa0703150:intron 35.0%
CACCAGAATACAAGATAGTT+TGG - chr4_4:74992838-74992857 None:intergenic 35.0%
CAAACTATCTTGTATTCTGG+TGG + chr4_4:74992836-74992855 Msa0703150:intron 35.0%
GAACTAAGCCTAACTAACTT+TGG - chr4_4:74992929-74992948 None:intergenic 35.0%
TAGTTAGGCTTAGTTCAGTT+AGG + chr4_4:74992933-74992952 Msa0703150:intron 35.0%
! ATAACTGAGCTGATTTCTTG+TGG + chr4_4:74993132-74993151 Msa0703150:intron 35.0%
TTTCTCCTCTTATATGCAGT+TGG + chr4_4:74993207-74993226 Msa0703150:intron 35.0%
CAAAACCAACTGCATATAAG+AGG - chr4_4:74993215-74993234 None:intergenic 35.0%
!!! ATGCAGTTGGTTTTGAAATG+TGG + chr4_4:74993220-74993239 Msa0703150:intron 35.0%
!! GCTATTTGCTATTGAAGACT+TGG + chr4_4:74993289-74993308 Msa0703150:CDS 35.0%
CATCTAAGTTACCTGTCTAT+TGG - chr4_4:74993343-74993362 None:intergenic 35.0%
CAATAGACAGGTAACTTAGA+TGG + chr4_4:74993341-74993360 Msa0703150:intron 35.0%
CTGTTATAAAAGAGAGGGAA+GGG - chr4_4:74993562-74993581 None:intergenic 35.0%
TCTGTTATAAAAGAGAGGGA+AGG - chr4_4:74993563-74993582 None:intergenic 35.0%
! TAAGGTTAGTTATTGGGCTT+AGG + chr4_4:74993633-74993652 Msa0703150:intron 35.0%
CTTCACTTATGATAGAACAC+TGG - chr4_4:74993666-74993685 None:intergenic 35.0%
CAGTGTTCTATCATAAGTGA+AGG + chr4_4:74993664-74993683 Msa0703150:intron 35.0%
TCTATCATAAGTGAAGGAAC+TGG + chr4_4:74993670-74993689 Msa0703150:intron 35.0%
! AAGCACTGTTGAATGAAGAT+TGG + chr4_4:74993743-74993762 Msa0703150:intron 35.0%
! TAAATCTGAAACTCACATGG+TGG + chr4_4:74993792-74993811 Msa0703150:intron 35.0%
! CCTTTTCAGATTCTACTACT+TGG - chr4_4:74993831-74993850 None:intergenic 35.0%
CCAAGTAGTAGAATCTGAAA+AGG + chr4_4:74993828-74993847 Msa0703150:intron 35.0%
!! ATCTGAAAAGGAAGCATTGA+AGG + chr4_4:74993840-74993859 Msa0703150:intron 35.0%
TAAAACTGATGCCTTTGCTA+TGG + chr4_4:74994111-74994130 Msa0703150:intron 35.0%
!! GTGAAATAGGAAGTGTTTGA+CGG - chr4_4:74994214-74994233 None:intergenic 35.0%
GTTACCATTAACGGAAAACT+GGG + chr4_4:74994464-74994483 Msa0703150:intron 35.0%
GTTACGAGTTACTAAATGCA+TGG + chr4_4:74994717-74994736 Msa0703150:intron 35.0%
! GCTATGAACTGATTCAGTTA+TGG - chr4_4:74994768-74994787 None:intergenic 35.0%
CCAAGCTTACACTATCTTAA+AGG - chr4_4:74994802-74994821 None:intergenic 35.0%
!! CCTTTAAGATAGTGTAAGCT+TGG + chr4_4:74994799-74994818 Msa0703150:intron 35.0%
! AAGCTTGGCATTGTTATTAG+CGG + chr4_4:74994814-74994833 Msa0703150:intron 35.0%
GTTGTGAGAAAAGTTATTGC+TGG - chr4_4:74994929-74994948 None:intergenic 35.0%
!! GTTTTAACCTCACTAATTCC+AGG - chr4_4:74995061-74995080 None:intergenic 35.0%
!!! ATCTTTGGTGTTTTGCACAT+AGG + chr4_4:74995237-74995256 Msa0703150:CDS 35.0%
!! ACCTTTGTTGGTCTTGTATA+CGG + chr4_4:74995446-74995465 Msa0703150:CDS 35.0%
TAGCGAGTTATCTATTGAGA+TGG - chr4_4:74995597-74995616 None:intergenic 35.0%
ACATTTGCAAACAGATCTCT+TGG - chr4_4:74995690-74995709 None:intergenic 35.0%
!!! ATGAGGCCATTTTTGGAAAA+TGG - chr4_4:74995923-74995942 None:intergenic 35.0%
!! AAAAGGAATGAGGCCATTTT+TGG - chr4_4:74995930-74995949 None:intergenic 35.0%
! AAAAATGGCCTCATTCCTTT+TGG + chr4_4:74995929-74995948 Msa0703150:three_prime_UTR 35.0%
! AAAATGGCCTCATTCCTTTT+GGG + chr4_4:74995930-74995949 Msa0703150:three_prime_UTR 35.0%
!!! TTCCTTTTGGGACAAAACTT+TGG + chr4_4:74995942-74995961 Msa0703150:three_prime_UTR 35.0%
!! AACCAAAGTTTTGTCCCAAA+AGG - chr4_4:74995947-74995966 None:intergenic 35.0%
! CTTTTGCCAAGAAATCCAAG+AGG + chr4_4:74991899-74991918 Msa0703150:CDS 40.0%
GAGAGATCTACAGATGTATC+AGG - chr4_4:74991931-74991950 None:intergenic 40.0%
!! CAAAGTTGGAAACGGATTGA+AGG - chr4_4:74992113-74992132 None:intergenic 40.0%
TTACACAAGATTGTTAGCCG+TGG + chr4_4:74992317-74992336 Msa0703150:intron 40.0%
TCTCATGTTGCGTCAATAGA+AGG + chr4_4:74992407-74992426 Msa0703150:CDS 40.0%
CCCACAACAGTATTGCTTTA+TGG - chr4_4:74992599-74992618 None:intergenic 40.0%
!!! GGATTTTCAAGTGGTATCAC+AGG + chr4_4:74992648-74992667 Msa0703150:intron 40.0%
ACTATCTTGTATTCTGGTGG+TGG + chr4_4:74992839-74992858 Msa0703150:intron 40.0%
CTATCTTGTATTCTGGTGGT+GGG + chr4_4:74992840-74992859 Msa0703150:intron 40.0%
!! ACTTCTCTGAAGCTAACCAA+TGG + chr4_4:74993087-74993106 Msa0703150:intron 40.0%
TGGCATCTTGAGATGATTAC+AGG + chr4_4:74993240-74993259 Msa0703150:CDS 40.0%
!! TTTGCTATTGAAGACTTGGC+CGG + chr4_4:74993293-74993312 Msa0703150:CDS 40.0%
TCACTAGACTCAGCAAAATC+CGG - chr4_4:74993315-74993334 None:intergenic 40.0%
ATGAGCTTAGAGCTCTACAA+TGG + chr4_4:74993411-74993430 Msa0703150:intron 40.0%
!! TAAGAGCATTATGCTCTGGT+AGG - chr4_4:74993481-74993500 None:intergenic 40.0%
!! TGGTTAAGAGCATTATGCTC+TGG - chr4_4:74993485-74993504 None:intergenic 40.0%
TTGTTAGGAGAGTTTCTCTC+TGG - chr4_4:74993505-74993524 None:intergenic 40.0%
TTCAGATTCTACTACTTGGC+AGG - chr4_4:74993827-74993846 None:intergenic 40.0%
CACAGATCCTCTTAAACCTA+AGG + chr4_4:74993875-74993894 Msa0703150:intron 40.0%
! TGCGTGAGAATTGATAATCG+TGG - chr4_4:74993938-74993957 None:intergenic 40.0%
ACCAAAACTAACTGATGGCT+CGG - chr4_4:74994057-74994076 None:intergenic 40.0%
!! AAATAGGAAGTGTTTGACGG+AGG - chr4_4:74994211-74994230 None:intergenic 40.0%
ATCAGTCATGTCGTGTAACA+AGG + chr4_4:74994274-74994293 Msa0703150:intron 40.0%
TTGATGAGTGACTACAGTGT+TGG - chr4_4:74994302-74994321 None:intergenic 40.0%
!!! TGGTTTTGGTTCTCTTCTTG+GGG - chr4_4:74994423-74994442 None:intergenic 40.0%
!!! GTGGTTTTGGTTCTCTTCTT+GGG - chr4_4:74994424-74994443 None:intergenic 40.0%
ACGAAAGCTTTCAAGCCATT+GGG - chr4_4:74994446-74994465 None:intergenic 40.0%
AACGAAAGCTTTCAAGCCAT+TGG - chr4_4:74994447-74994466 None:intergenic 40.0%
CGTTACCATTAACGGAAAAC+TGG + chr4_4:74994463-74994482 Msa0703150:intron 40.0%
TGAGACAAGTGCATAAGAGA+AGG + chr4_4:74994512-74994531 Msa0703150:intron 40.0%
TGCGTGAGAATCAATAATCG+TGG + chr4_4:74994552-74994571 Msa0703150:intron 40.0%
GCACTCCTAACAATTACCTT+TGG + chr4_4:74994595-74994614 Msa0703150:intron 40.0%
CTCCTAACAATTACCTTTGG+AGG + chr4_4:74994598-74994617 Msa0703150:intron 40.0%
AGCCTCCAAAGGTAATTGTT+AGG - chr4_4:74994603-74994622 None:intergenic 40.0%
! ATTACCTTTGGAGGCTTAAG+AGG + chr4_4:74994607-74994626 Msa0703150:intron 40.0%
TGAGAAAAGTTATTGCTGGC+CGG - chr4_4:74994925-74994944 None:intergenic 40.0%
CGGCAATATAATCCAAAGGT+TGG - chr4_4:74995027-74995046 None:intergenic 40.0%
GCAACGGCAATATAATCCAA+AGG - chr4_4:74995031-74995050 None:intergenic 40.0%
AATTCCAGGCAAAACTGCAA+CGG - chr4_4:74995047-74995066 None:intergenic 40.0%
! AGTTTTGCCTGGAATTAGTG+AGG + chr4_4:74995051-74995070 Msa0703150:CDS 40.0%
ATCCTACCATCTTGAATTCC+AGG + chr4_4:74995143-74995162 Msa0703150:intron 40.0%
TTCCTGGAATTCAAGATGGT+AGG - chr4_4:74995148-74995167 None:intergenic 40.0%
GTAGTTCCTGGAATTCAAGA+TGG - chr4_4:74995152-74995171 None:intergenic 40.0%
! AATGAACTGGACGAGTATTG+CGG + chr4_4:74995203-74995222 Msa0703150:CDS 40.0%
GAAACTATTCCTTTGCCATC+TGG + chr4_4:74995268-74995287 Msa0703150:CDS 40.0%
CATGGAGAGGATACGATAAA+AGG - chr4_4:74995337-74995356 None:intergenic 40.0%
! CTTTTATCGTATCCTCTCCA+TGG + chr4_4:74995335-74995354 Msa0703150:intron 40.0%
TCCGTATACAAGACCAACAA+AGG - chr4_4:74995450-74995469 None:intergenic 40.0%
TATAACACCAAACCCATCGA+CGG - chr4_4:74995641-74995660 None:intergenic 40.0%
! GTTTTGTCCCAAAAGGAATG+AGG - chr4_4:74995940-74995959 None:intergenic 40.0%
AGTGTGCGAGAGATAAAGCA+CGG - chr4_4:74991452-74991471 None:intergenic 45.0%
GATAGTACTACAGCAACTCC+AGG - chr4_4:74991482-74991501 None:intergenic 45.0%
GTAGCAGTAGAGTATGCTGT+GGG - chr4_4:74991508-74991527 None:intergenic 45.0%
TCCTTCCCTCTTGGATTTCT+TGG - chr4_4:74991908-74991927 None:intergenic 45.0%
! GGGTTAGCATTCTCAACAAG+TGG - chr4_4:74992003-74992022 None:intergenic 45.0%
ATGCTAACCCTATTCCTTCC+AGG + chr4_4:74992013-74992032 Msa0703150:CDS 45.0%
!! CAAGCTTGCATACTGACTTC+TGG + chr4_4:74992048-74992067 Msa0703150:CDS 45.0%
!! TCTGGTCTCATTGCTGCTTT+CGG + chr4_4:74992066-74992085 Msa0703150:CDS 45.0%
!! AAACGGATTGAAGGAGAACC+TGG - chr4_4:74992104-74992123 None:intergenic 45.0%
TCTTAATGCCAGCCAAAGCT+TGG + chr4_4:74992292-74992311 Msa0703150:intron 45.0%
! GTGTAAAACCAAGCTTTGGC+TGG - chr4_4:74992303-74992322 None:intergenic 45.0%
TGCGTCAATAGAAGGATTGC+CGG + chr4_4:74992415-74992434 Msa0703150:CDS 45.0%
AATAGAAGGATTGCCGGTCT+TGG + chr4_4:74992421-74992440 Msa0703150:CDS 45.0%
TGGGAACAATAGTGACTGTG+TGG - chr4_4:74992909-74992928 None:intergenic 45.0%
TAGTGAAGCAGCCAATAGAC+AGG + chr4_4:74993329-74993348 Msa0703150:CDS 45.0%
AGCTTAGAGCTCTACAATGG+TGG + chr4_4:74993414-74993433 Msa0703150:intron 45.0%
GCTTAGAGCTCTACAATGGT+GGG + chr4_4:74993415-74993434 Msa0703150:intron 45.0%
TGTCACACTGTCATTGCAGT+TGG + chr4_4:74993715-74993734 Msa0703150:intron 45.0%
!! AGGAAGCATTGAAGGTGAAG+TGG + chr4_4:74993848-74993867 Msa0703150:intron 45.0%
TAACAGAGAAAACTGGGAGC+AGG - chr4_4:74994018-74994037 None:intergenic 45.0%
!! TCCGAGCCATCAGTTAGTTT+TGG + chr4_4:74994053-74994072 Msa0703150:intron 45.0%
TTACTCGGACACCATAGCAA+AGG - chr4_4:74994125-74994144 None:intergenic 45.0%
!!! GGTGGTTTTGGTTCTCTTCT+TGG - chr4_4:74994425-74994444 None:intergenic 45.0%
AGAGAACCAAAACCACCCAA+TGG + chr4_4:74994428-74994447 Msa0703150:intron 45.0%
! TTCAAGCCATTGGGTGGTTT+TGG - chr4_4:74994437-74994456 None:intergenic 45.0%
AAAGCTTTCAAGCCATTGGG+TGG - chr4_4:74994443-74994462 None:intergenic 45.0%
! TGCTCCCAGTTTTCCGTTAA+TGG - chr4_4:74994471-74994490 None:intergenic 45.0%
ATTAACGGAAAACTGGGAGC+AGG + chr4_4:74994470-74994489 Msa0703150:intron 45.0%
AGTGCATAAGAGAAGGAAGC+AGG + chr4_4:74994519-74994538 Msa0703150:intron 45.0%
TGCATGCACGTTATAAGTCG+TGG + chr4_4:74994631-74994650 Msa0703150:intron 45.0%
AGAGAGCTAAGGACCTGATT+TGG - chr4_4:74995004-74995023 None:intergenic 45.0%
!! TTCCAGGAACTACTTTTCCG+CGG + chr4_4:74995159-74995178 Msa0703150:intron 45.0%
!!! TGCCACTTTTGGGAATGAAC+TGG + chr4_4:74995190-74995209 Msa0703150:CDS 45.0%
GTCCAGTTCATTCCCAAAAG+TGG - chr4_4:74995195-74995214 None:intergenic 45.0%
! GCGGTAGCTGCTTTAATCTT+TGG + chr4_4:74995222-74995241 Msa0703150:CDS 45.0%
! GGTGTTTTGCACATAGGCAA+TGG + chr4_4:74995243-74995262 Msa0703150:CDS 45.0%
AATTAGGGACATGCACCAGA+TGG - chr4_4:74995286-74995305 None:intergenic 45.0%
TGATCTACATGCCAATGCCA+TGG - chr4_4:74995355-74995374 None:intergenic 45.0%
TGTTTCAGGGCAACCTTTGT+TGG + chr4_4:74995434-74995453 Msa0703150:intron 45.0%
TTCACTGCATGAGAAGCCAT+GGG - chr4_4:74995506-74995525 None:intergenic 45.0%
CATGCAGTGAACAACCTGAT+AGG + chr4_4:74995515-74995534 Msa0703150:CDS 45.0%
CAGTGAACAACCTGATAGGA+GGG + chr4_4:74995519-74995538 Msa0703150:CDS 45.0%
! ACCTGATAGGAGGGCTTTTA+TGG + chr4_4:74995528-74995547 Msa0703150:CDS 45.0%
! TGATAGGAGGGCTTTTATGG+CGG + chr4_4:74995531-74995550 Msa0703150:CDS 45.0%
ATAACACCAAACCCATCGAC+GGG - chr4_4:74995640-74995659 None:intergenic 45.0%
!!! TATAATATTCAAATTTTAAA+TGG - chr4_4:74994844-74994863 None:intergenic 5.0%
TCTCGCACACTCTCAATTCC+TGG + chr4_4:74991461-74991480 Msa0703150:CDS 50.0%
GGTAGCAGTAGAGTATGCTG+TGG - chr4_4:74991509-74991528 None:intergenic 50.0%
ACTGTGAGGGAGAGTGATGA+AGG - chr4_4:74991530-74991549 None:intergenic 50.0%
GCCAAGAAATCCAAGAGGGA+AGG + chr4_4:74991904-74991923 Msa0703150:CDS 50.0%
TGTATCAGGTCCTTCCCTCT+TGG - chr4_4:74991917-74991936 None:intergenic 50.0%
CAGCACTCCTGGAAGGAATA+GGG - chr4_4:74992023-74992042 None:intergenic 50.0%
ACAGCACTCCTGGAAGGAAT+AGG - chr4_4:74992024-74992043 None:intergenic 50.0%
!! CTGGTCTCATTGCTGCTTTC+GGG + chr4_4:74992067-74992086 Msa0703150:CDS 50.0%
TCTGTAGAGCAGTCCAAGAC+CGG - chr4_4:74992437-74992456 None:intergenic 50.0%
!! TGGTAGGAGTGTTCACACTC+TGG - chr4_4:74993465-74993484 None:intergenic 50.0%
GAAGGGTAGTGTGTAACTCG+TGG - chr4_4:74993545-74993564 None:intergenic 50.0%
GCATCCTCTTAAGCCTCCAA+AGG - chr4_4:74994614-74994633 None:intergenic 50.0%
CCAAAGGTTGGAGAGAGCTA+AGG - chr4_4:74995015-74995034 None:intergenic 50.0%
! CCTTAGCTCTCTCCAACCTT+TGG + chr4_4:74995012-74995031 Msa0703150:CDS 50.0%
! ATTGCCGTTGCAGTTTTGCC+TGG + chr4_4:74995040-74995059 Msa0703150:CDS 50.0%
TCGTATCCTCTCCATGGCAT+TGG + chr4_4:74995341-74995360 Msa0703150:intron 50.0%
TACATGCCAATGCCATGGAG+AGG - chr4_4:74995350-74995369 None:intergenic 50.0%
GTTCACTGCATGAGAAGCCA+TGG - chr4_4:74995507-74995526 None:intergenic 50.0%
GCAGTGAACAACCTGATAGG+AGG + chr4_4:74995518-74995537 Msa0703150:CDS 50.0%
GCCATAAAAGCCCTCCTATC+AGG - chr4_4:74995532-74995551 None:intergenic 50.0%
TTATTCAACCTCCCCGTCGA+TGG + chr4_4:74995625-74995644 Msa0703150:three_prime_UTR 50.0%
TATTCAACCTCCCCGTCGAT+GGG + chr4_4:74995626-74995645 Msa0703150:three_prime_UTR 50.0%
TAACACCAAACCCATCGACG+GGG - chr4_4:74995639-74995658 None:intergenic 50.0%
TGAAGCACAGCACTCCTGGA+AGG - chr4_4:74992030-74992049 None:intergenic 55.0%
AGCTTGAAGCACAGCACTCC+TGG - chr4_4:74992034-74992053 None:intergenic 55.0%
TTTCGGGACAGTGATTCGCC+AGG + chr4_4:74992083-74992102 Msa0703150:CDS 55.0%
!!! GGCGCAGTTCTGCCACTTTT+GGG + chr4_4:74995180-74995199 Msa0703150:CDS 55.0%
GGACATGCACCAGATGGCAA+AGG - chr4_4:74995280-74995299 None:intergenic 55.0%
CATGGGAACTGCAAGGCTAG+AGG - chr4_4:74995489-74995508 None:intergenic 55.0%
!! CTCTAGCCTTGCAGTTCCCA+TGG + chr4_4:74995487-74995506 Msa0703150:CDS 55.0%
GAGAAGCCATGGGAACTGCA+AGG - chr4_4:74995496-74995515 None:intergenic 55.0%
CTGCTCCCGAGATCCTGTCT+CGG + chr4_4:74994394-74994413 Msa0703150:intron 60.0%
GGTCACCGAGACAGGATCTC+GGG - chr4_4:74994402-74994421 None:intergenic 60.0%
GGGTCACCGAGACAGGATCT+CGG - chr4_4:74994403-74994422 None:intergenic 60.0%
CTTCTTGGGGTCACCGAGAC+AGG - chr4_4:74994410-74994429 None:intergenic 60.0%
CGCCGCGGAAAAGTAGTTCC+TGG - chr4_4:74995164-74995183 None:intergenic 60.0%
AAAGTGGCAGAACTGCGCCG+CGG - chr4_4:74995179-74995198 None:intergenic 60.0%
!!! CGGCGCAGTTCTGCCACTTT+TGG + chr4_4:74995179-74995198 Msa0703150:CDS 60.0%
! AACCTCCCCGTCGATGGGTT+TGG + chr4_4:74995631-74995650 Msa0703150:three_prime_UTR 60.0%
CACCAAACCCATCGACGGGG+AGG - chr4_4:74995636-74995655 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 74991370 74995977 74991370 ID=Msa0703150;Name=Msa0703150
chr4_4 mRNA 74991370 74995977 74991370 ID=Msa0703150-mRNA-1;Parent=Msa0703150;Name=Msa0703150-mRNA-1;_AED=0.25;_eAED=0.25;_QI=39|1|1|1|1|1|7|403|290
chr4_4 exon 74991370 74991547 74991370 ID=Msa0703150-mRNA-1:exon:23426;Parent=Msa0703150-mRNA-1
chr4_4 exon 74991878 74992104 74991878 ID=Msa0703150-mRNA-1:exon:23427;Parent=Msa0703150-mRNA-1
chr4_4 exon 74992404 74992464 74992404 ID=Msa0703150-mRNA-1:exon:23428;Parent=Msa0703150-mRNA-1
chr4_4 exon 74993226 74993350 74993226 ID=Msa0703150-mRNA-1:exon:23429;Parent=Msa0703150-mRNA-1
chr4_4 exon 74995010 74995072 74995010 ID=Msa0703150-mRNA-1:exon:23430;Parent=Msa0703150-mRNA-1
chr4_4 exon 74995165 74995289 74995165 ID=Msa0703150-mRNA-1:exon:23431;Parent=Msa0703150-mRNA-1
chr4_4 exon 74995442 74995977 74995442 ID=Msa0703150-mRNA-1:exon:23432;Parent=Msa0703150-mRNA-1
chr4_4 five_prime_UTR 74991370 74991408 74991370 ID=Msa0703150-mRNA-1:five_prime_utr;Parent=Msa0703150-mRNA-1
chr4_4 CDS 74991409 74991547 74991409 ID=Msa0703150-mRNA-1:cds;Parent=Msa0703150-mRNA-1
chr4_4 CDS 74991878 74992104 74991878 ID=Msa0703150-mRNA-1:cds;Parent=Msa0703150-mRNA-1
chr4_4 CDS 74992404 74992464 74992404 ID=Msa0703150-mRNA-1:cds;Parent=Msa0703150-mRNA-1
chr4_4 CDS 74993226 74993350 74993226 ID=Msa0703150-mRNA-1:cds;Parent=Msa0703150-mRNA-1
chr4_4 CDS 74995010 74995072 74995010 ID=Msa0703150-mRNA-1:cds;Parent=Msa0703150-mRNA-1
chr4_4 CDS 74995165 74995289 74995165 ID=Msa0703150-mRNA-1:cds;Parent=Msa0703150-mRNA-1
chr4_4 CDS 74995442 74995574 74995442 ID=Msa0703150-mRNA-1:cds;Parent=Msa0703150-mRNA-1
chr4_4 three_prime_UTR 74995575 74995977 74995575 ID=Msa0703150-mRNA-1:three_prime_utr;Parent=Msa0703150-mRNA-1
Gene Sequence

>Msa0703150

ATGCTTCATATATTATGTAGTATCATTCATTCATACATGGCCGTGCTTTATCTCTCGCACACTCTCAATTCCTGGAGTTGCTGTAGTACTATCGCTCCCACAGCATACTCTACTGCTACCTTCATCACTCTCCCTCACAGGAGTAGATATAACACATGTTCTTTTGCCAAGAAATCCAAGAGGGAAGGACCTGATACATCTGTAGATCTCTCAAACGACAAATCTGTTCAAAATGACAACTTATTGGACACTTCTCTTAATCCACTTGTTGAGAATGCTAACCCTATTCCTTCCAGGAGTGCTGTGCTTCAAGCTTGCATACTGACTTCTGGTCTCATTGCTGCTTTCGGGACAGTGATTCGCCAGGTGTCTCATGTTGCGTCAATAGAAGGATTGCCGGTCTTGGACTGCTCTACAGAAGTATCATTTGGTTTTGAAATGTGGCATCTTGAGATGATTACAGGAATTGTAGTATTAATATCATCAAGTCGCTATTTGCTATTGAAGACTTGGCCGGATTTTGCTGAGTCTAGTGAAGCAGCCAATAGACAGGTCCTTAGCTCTCTCCAACCTTTGGATTATATTGCCGTTGCAGTTTTGCCTGGAATTAGTGAGGAACTACTTTTCCGCGGCGCAGTTCTGCCACTTTTGGGAATGAACTGGACGAGTATTGCGGTAGCTGCTTTAATCTTTGGTGTTTTGCACATAGGCAATGGTCGAAACTATTCCTTTGCCATCTGGGCAACCTTTGTTGGTCTTGTATACGGATATGCTACAGTTTTATCCTCTAGCCTTGCAGTTCCCATGGCTTCTCATGCAGTGAACAACCTGATAGGAGGGCTTTTATGGCGGTACACATCAAAGCAGAAATGA

Protein sequence

>Msa0703150

MLHILCSIIHSYMAVLYLSHTLNSWSCCSTIAPTAYSTATFITLPHRSRYNTCSFAKKSKREGPDTSVDLSNDKSVQNDNLLDTSLNPLVENANPIPSRSAVLQACILTSGLIAAFGTVIRQVSHVASIEGLPVLDCSTEVSFGFEMWHLEMITGIVVLISSSRYLLLKTWPDFAESSEAANRQVLSSLQPLDYIAVAVLPGISEELLFRGAVLPLLGMNWTSIAVAALIFGVLHIGNGRNYSFAIWATFVGLVYGYATVLSSSLAVPMASHAVNNLIGGLLWRYTSKQK*