AlfalfaGEDB | Msa0305910

M. sativa cultivar zhongmu-4 / Msa0305910

KEGG: -
GO: GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576
PFAM: PF00364.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305910	XP_039686861.1	94.585	277	15	0	1	277	1	277	0.0	536

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305910	sp\|Q06881\|BCCP_NOSS1	31.414	191	103	7	92	267	4	181	1.33e-11	65.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305910	G7IUS4	94.585	277	15	0	1	277	1	277	0.0	536

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0305910	0.821552	3.800505e-53	-8.615850e-47
Msa0000220	Msa0305910	0.803591	3.240106e-49	-8.615850e-47
Msa0000610	Msa0305910	0.903991	1.955373e-79	-8.615850e-47
Msa0000800	Msa0305910	-0.804416	2.183332e-49	-8.615850e-47
Msa0001040	Msa0305910	0.854716	1.022975e-61	-8.615850e-47
Msa0001510	Msa0305910	0.844159	8.984419e-59	-8.615850e-47
Msa0002110	Msa0305910	0.876108	1.814293e-68	-8.615850e-47
Msa0002690	Msa0305910	0.878587	2.488977e-69	-8.615850e-47
Msa0002700	Msa0305910	0.878542	2.580889e-69	-8.615850e-47
Msa0003340	Msa0305910	0.898123	7.223557e-77	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305910	MtrunA17_Chr2g0332621	94.585	277	15	0	1	277	1	277	0.0	536
Msa0305910	MtrunA17_Chr5g0437771	33.871	248	157	5	30	273	35	279	3.83e-37	132
Msa0305910	MtrunA17_Chr3g0114231	34.615	208	120	4	78	273	71	274	8.90e-31	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0305910	AT3G15690.2	49.097	277	126	5	1	276	1	263	1.33e-81	246
Msa0305910	AT1G52670.1	46.154	273	143	4	6	276	4	274	3.26e-73	226
Msa0305910	AT3G15690.1	45.669	254	123	5	1	253	1	240	5.97e-65	204
Msa0305910	AT3G15690.3	45.161	248	123	4	7	253	7	242	2.86e-63	199
Msa0305910	AT3G56130.1	34.956	226	126	4	63	272	58	278	5.52e-35	127
Msa0305910	AT3G56130.2	36.458	192	102	3	96	272	16	202	2.50e-33	121
Msa0305910	AT3G56130.3	55.319	94	42	0	179	272	98	191	2.48e-30	113
Msa0305910	AT3G56130.4	31.884	207	120	4	63	253	58	259	1.07e-24	100
Msa0305910	AT3G56130.5	29.319	191	114	4	63	237	58	243	7.02e-17	78.6

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Find 88 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGCAGATGAAGGGT+TGG	0.594334	2_3:+63996813	Msa0305910:CDS
AAACGTATCACAGGTAGCTT+AGG	0.415749	2_3:+63993218	Msa0305910:intron
AAAGAATGAGAATGGAGGGT+TGG	0.559129	2_3:-63997696	None:intergenic
AAAGAGAGAATGAAGGTTGA+CGG	0.471060	2_3:-63992112	None:intergenic
AAAGTATTGAACTTGCACTT+TGG	0.522702	2_3:+63993254	Msa0305910:CDS
AACGTATCACAGGTAGCTTA+GGG	0.563493	2_3:+63993219	Msa0305910:intron
AAGATTCTAAGAGAGGATGG+CGG	0.764705	2_3:+63997342	Msa0305910:CDS
AAGTTCTAATCACATGCTAA+TGG	0.474616	2_3:-63992034	None:intergenic
AATGATATATATCAGCTTGA+TGG	0.374079	2_3:+63996604	Msa0305910:intron
AATGTAGAAACTGATCCATT+TGG	0.403959	2_3:-63996730	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGGAGAAGTAGAAAA+AGG	-	chr2_3:63992245-63992264	None:intergenic	30.0%
TTTGGAGACTGCATAATTAA+GGG	+	chr2_3:63992812-63992831	Msa0305910:intron	30.0%
TTTACAACCAAACAAAACGA+GGG	+	chr2_3:63992866-63992885	Msa0305910:intron	30.0%
GCAACCTTTGTAACATTTAT+AGG	+	chr2_3:63993043-63993062	Msa0305910:intron	30.0%
GTTGCCTATAAATGTTACAA+AGG	-	chr2_3:63993050-63993069	None:intergenic	30.0%
GTATGTATTGTTCATGCAAA+TGG	+	chr2_3:63993115-63993134	Msa0305910:intron	30.0%
AATGCATGTGAAATCATTGA+TGG	-	chr2_3:63993528-63993547	None:intergenic	30.0%
ATTGATGTCACCTATATCTT+TGG	+	chr2_3:63994276-63994295	Msa0305910:intron	30.0%
TTATTGTCCTCCAAAGATAT+AGG	-	chr2_3:63994289-63994308	None:intergenic	30.0%
TGAAAATTGCTTAGCTAAAC+TGG	-	chr2_3:63994570-63994589	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	63992033	63997719	63992033	ID=Msa0305910;Name=Msa0305910
chr2_3	mRNA	63992033	63997719	63992033	ID=Msa0305910-mRNA-1;Parent=Msa0305910;Name=Msa0305910-mRNA-1;_AED=0.12;_eAED=0.12;_QI=187\|1\|1\|1\|0.75\|0.88\|9\|190\|277
chr2_3	exon	63992033	63992235	63992033	ID=Msa0305910-mRNA-1:exon:21414;Parent=Msa0305910-mRNA-1
chr2_3	exon	63993231	63993419	63993231	ID=Msa0305910-mRNA-1:exon:21415;Parent=Msa0305910-mRNA-1
chr2_3	exon	63996176	63996255	63996176	ID=Msa0305910-mRNA-1:exon:21416;Parent=Msa0305910-mRNA-1
chr2_3	exon	63996425	63996484	63996425	ID=Msa0305910-mRNA-1:exon:21417;Parent=Msa0305910-mRNA-1
chr2_3	exon	63996619	63996855	63996619	ID=Msa0305910-mRNA-1:exon:21418;Parent=Msa0305910-mRNA-1
chr2_3	exon	63996920	63996982	63996920	ID=Msa0305910-mRNA-1:exon:21419;Parent=Msa0305910-mRNA-1
chr2_3	exon	63997127	63997195	63997127	ID=Msa0305910-mRNA-1:exon:21420;Parent=Msa0305910-mRNA-1
chr2_3	exon	63997318	63997363	63997318	ID=Msa0305910-mRNA-1:exon:21421;Parent=Msa0305910-mRNA-1
chr2_3	exon	63997456	63997719	63997456	ID=Msa0305910-mRNA-1:exon:21422;Parent=Msa0305910-mRNA-1
chr2_3	five_prime_UTR	63992033	63992219	63992033	ID=Msa0305910-mRNA-1:five_prime_utr;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63992220	63992235	63992220	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63993231	63993419	63993231	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63996176	63996255	63996176	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63996425	63996484	63996425	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63996619	63996855	63996619	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63996920	63996982	63996920	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63997127	63997195	63997127	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63997318	63997363	63997318	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	CDS	63997456	63997529	63997456	ID=Msa0305910-mRNA-1:cds;Parent=Msa0305910-mRNA-1
chr2_3	three_prime_UTR	63997530	63997719	63997530	ID=Msa0305910-mRNA-1:three_prime_utr;Parent=Msa0305910-mRNA-1

Gene Sequence

>Msa0305910

ATGGCTTCATCTCACTGTAGCTTAGGGACACAAAATGTCAAAGTATTGAACTTGCACTTTGGTCAAGAAAGAGTTGAGCTTTCACAACATTTTGGTACTAGAAGTTGGATCAGTAGGAAGTCACTGCAGTACACTAGATTGGTTGCGTCAAGACAGACAGTTAGATCTTTAACCCCATCTAATGACCAATCAGCAGAGATCCAATCTGTTTCAAGGTCAGAAGGTGGTTCTGAAGAGATTAAATCTTCTGGTTTGACAAGTGAACTGTTTCCCAATTTTAATGATGTGGAATTCTTGGTCACTAACTTATGTGAGACGGCATCAATTGGAGAGCTAGAATTAAAACTTGATGGATTTCACCTGCGTGTAGTGAGGGATTTGACTGAAAAATCTAAAACACTTCCTCCTTCAATTCCTGCTCCTGTAAGTATAAATACACCCGCAGAAGCACCTAAACCAAATGGATCAGTTTCTACATTGACAACATTGGCCATCTCGAAACCAGTACCTTCTTCATTGTCTATCGAGGGATTCCTAGAAAAAGCTGCAGATGAAGGGTTGGTGATAATTCATTCTCCAACGGTTGGCATCTTCAGAAGATCTCGGACGATAAAGGGAAAACGTGCTCCTCCTTCATGTAATGAGATGCAAAAAGTTGAGGACGGGAAAGTGATTTGTTACATTGAACAGCTTGGTGGGCAGCTACCAGTTGAGTCTGACGTGTCCGGGGAGGTCATCAAGATTCTAAGAGAGGATGGCGATCCAGTTGGTTATGGTGATGCACTTATAGCAATATTGCCGTCATTTCCCGGAATAAAGAAGCTTCAATATTGA

Protein sequence

>Msa0305910

MASSHCSLGTQNVKVLNLHFGQERVELSQHFGTRSWISRKSLQYTRLVASRQTVRSLTPSNDQSAEIQSVSRSEGGSEEIKSSGLTSELFPNFNDVEFLVTNLCETASIGELELKLDGFHLRVVRDLTEKSKTLPPSIPAPVSINTPAEAPKPNGSVSTLTTLAISKPVPSSLSIEGFLEKAADEGLVIIHSPTVGIFRRSRTIKGKRAPPSCNEMQKVEDGKVICYIEQLGGQLPVESDVSGEVIKILREDGDPVGYGDALIAILPSFPGIKKLQY*