AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0047230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047230 MtrunA17_Chr8g0347741 88.136 118 12 1 26 143 229 344 6.72e-65 203
Msa0047230 MtrunA17_Chr7g0275321 68.908 119 30 2 30 143 229 345 4.81e-45 152
Msa0047230 MtrunA17_Chr8g0369161 58.904 73 28 1 71 143 301 371 2.09e-19 83.2
Msa0047230 MtrunA17_Chr8g0373571 60.526 76 27 2 69 143 251 324 5.40e-19 81.6
Msa0047230 MtrunA17_Chr5g0410531 60.274 73 27 1 71 143 302 372 1.81e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0047230 AT2G46270.1 59.813 107 33 3 36 142 226 322 2.49e-30 112
Msa0047230 AT2G46270.3 59.813 107 33 3 36 142 226 322 2.49e-30 112
Msa0047230 AT2G46270.2 75.362 69 15 1 74 142 233 299 3.51e-24 96.3
Msa0047230 AT2G46270.4 75.362 69 15 1 74 142 233 299 3.51e-24 96.3
Msa0047230 AT4G01120.1 51.000 100 36 4 43 142 226 312 2.37e-20 85.9
Msa0047230 AT2G35530.1 51.546 97 34 3 55 143 278 369 8.08e-20 84.7
Msa0047230 AT1G32150.1 57.333 75 28 2 71 143 287 359 1.41e-17 78.2
Msa0047230 AT4G36730.1 54.167 72 31 1 72 143 217 286 3.49e-15 71.2
Msa0047230 AT4G36730.2 54.167 72 31 1 72 143 215 284 4.00e-15 70.9

Find 111 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTATCTTCAGGCATATTA+TGG 0.170895 1_1:-79941846 Msa0047230:intron
TTTCAAAATCTAATCAATTA+TGG 0.213890 1_1:+79939302 None:intergenic
GTTGCCATCGCTTCCATTAC+TGG 0.238359 1_1:+79941198 None:intergenic
AAACCCAACGGCATTATTAT+AGG 0.241535 1_1:-79939372 Msa0047230:three_prime_UTR
TGCATTGACTGCCGAGAATT+TGG 0.257432 1_1:-79939812 Msa0047230:CDS
GTTGGTGTCTCTATGCTTGT+AGG 0.275884 1_1:+79941459 None:intergenic
TATGTATGGAGTATCTAATT+TGG 0.285343 1_1:+79942294 None:intergenic
GTTGGACCTGTACTTTCTTC+AGG 0.296175 1_1:-79940615 Msa0047230:CDS
GAGTCAAAATTATCTATAAT+TGG 0.311166 1_1:+79939496 None:intergenic
ACATAAAATTATTTATATCT+TGG 0.318548 1_1:-79939709 Msa0047230:exon
TTTATATCTTGGCATTTCAT+AGG 0.327504 1_1:-79939698 Msa0047230:three_prime_UTR
CTCATCCTTGTCTACATTCA+TGG 0.328766 1_1:-79942028 Msa0047230:five_prime_UTR
AACCCAACGGCATTATTATA+GGG 0.336990 1_1:-79939371 Msa0047230:three_prime_UTR
TTTGGAAGCGGCAGTCTCTT+TGG 0.337449 1_1:+79940678 None:intergenic
GCAACCAGTGCTGCAGAAAA+TGG 0.342628 1_1:-79940637 Msa0047230:CDS
GTTTCAATGGAAAGAGAATA+TGG 0.347871 1_1:+79942079 None:intergenic
TATATGTAGGTATGGCAAAA+TGG 0.356098 1_1:-79939140 Msa0047230:three_prime_UTR
CGCTTCCATTACTGGAAGTC+TGG 0.357892 1_1:+79941206 None:intergenic
CGAGAATTTGGTGCTGAAAT+CGG 0.374258 1_1:-79939800 Msa0047230:CDS
TTAGTAATATAGGATAATTC+AGG 0.376807 1_1:-79942270 Msa0047230:five_prime_UTR
TGTGGAACACTGGTGGAAAT+AGG 0.380405 1_1:+79940558 None:intergenic
CGATTTCAGCACCAAATTCT+CGG 0.384484 1_1:+79939801 None:intergenic
ACAGGCTGAGGCTGAAGAAT+TGG 0.391234 1_1:-79939848 Msa0047230:intron
GCAGCAGCTGAGTTGAAATA+TGG 0.399898 1_1:+79941801 None:intergenic
TCGGCGAGAAACTTGATAGA+TGG 0.401345 1_1:-79939178 Msa0047230:three_prime_UTR
ACTGAAACAATGTAGATTGT+AGG 0.403382 1_1:-79939278 Msa0047230:three_prime_UTR
CCTATATTACTAATTATGTA+TGG 0.408840 1_1:+79942280 None:intergenic
CTGAAACAATGTAGATTGTA+GGG 0.415907 1_1:-79939277 Msa0047230:three_prime_UTR
ATCATCTGGAAACACTGATC+AGG 0.417420 1_1:-79941433 Msa0047230:five_prime_UTR
AACATTCAACCACAAAGGTT+TGG 0.421468 1_1:+79941644 None:intergenic
GCCTCCTGAAGCTTGGATGC+AGG 0.426706 1_1:-79940520 Msa0047230:intron
AGGGCTACAGAGGAAGAAAA+TGG 0.427836 1_1:-79939408 Msa0047230:three_prime_UTR
CCATACATAATTAGTAATAT+AGG 0.429988 1_1:-79942280 Msa0047230:five_prime_UTR
GAAGCTGGAAAACACTCAAT+TGG 0.435156 1_1:-79939469 Msa0047230:three_prime_UTR
TACATATGAATATGTTATAC+TGG 0.444536 1_1:-79941723 Msa0047230:five_prime_UTR
GAGACACCAACTAAATCATC+TGG 0.445527 1_1:-79941447 Msa0047230:five_prime_UTR
CTTAATGTACCAAACCTTTG+TGG 0.446577 1_1:-79941653 Msa0047230:five_prime_UTR
TTCAACTCAGCTGCTGCTCC+TGG 0.457412 1_1:-79941795 Msa0047230:five_prime_UTR
GCAGCGACGCGTCATATTGA+AGG 0.458703 1_1:+79939544 None:intergenic
TGTATCTTCAGGCATATTAT+GGG 0.464465 1_1:-79941845 Msa0047230:intron
GAAATCGGAAATGAATGAAT+TGG 0.472002 1_1:-79939785 Msa0047230:CDS
TTCAGGTATGACCACATCAC+TGG 0.473232 1_1:-79940598 Msa0047230:CDS
GAAGATCCAGGCTTAGGCTT+AGG 0.474677 1_1:-79940305 Msa0047230:CDS
AAACTTACAGCAGGTGAAGA+TGG 0.476285 1_1:+79941587 None:intergenic
GTACTTATGAATTATATTCA+AGG 0.477420 1_1:-79941614 Msa0047230:five_prime_UTR
GTGGAGTATTCTTTATCGAT+TGG 0.481011 1_1:+79942104 None:intergenic
AGTACCTGCATCCAAGCTTC+AGG 0.494330 1_1:+79940516 None:intergenic
ACCAGTGTTCCACAGCCTTG+TGG 0.495543 1_1:-79940549 Msa0047230:CDS
GGAAGCGATGGCAACACTAC+AGG 0.500726 1_1:-79941190 Msa0047230:five_prime_UTR
GAAGGTGTAGGTCGTTTCAA+TGG 0.503975 1_1:+79942066 None:intergenic
GTGTTTCCAGATGATTTAGT+TGG 0.505094 1_1:+79941441 None:intergenic
AACCCTATAATAATGCCGTT+GGG 0.507995 1_1:+79939369 None:intergenic
AAAGAAATTCACTTATATGT+AGG 0.508083 1_1:-79939153 Msa0047230:three_prime_UTR
CAAAGCATGGACACAGACAC+TGG 0.509651 1_1:-79939672 Msa0047230:three_prime_UTR
CTGCTAGAAGATCCAGGCTT+AGG 0.520262 1_1:-79940311 Msa0047230:CDS
CGGCGAGAAACTTGATAGAT+GGG 0.526999 1_1:-79939177 Msa0047230:three_prime_UTR
TAACCCTATAATAATGCCGT+TGG 0.527045 1_1:+79939368 None:intergenic
AATTCACTTATATGTAGGTA+TGG 0.527085 1_1:-79939148 Msa0047230:three_prime_UTR
ATGGAAAGAGAATATGGTTG+TGG 0.527159 1_1:+79942085 None:intergenic
CTATTTAGTCAAATTATCAC+CGG 0.529024 1_1:+79939627 None:intergenic
GCTAGCGTGGAGAGGAAAAC+CGG 0.540495 1_1:-79941383 Msa0047230:five_prime_UTR
GGCAAAACTCCACAAGGCTG+TGG 0.541143 1_1:+79940540 None:intergenic
TTGCTTCCTAAGCCTAAGCC+TGG 0.544129 1_1:+79940299 None:intergenic
TGAAACAATGTAGATTGTAG+GGG 0.546493 1_1:-79939276 Msa0047230:three_prime_UTR
TCATCTGGAAACACTGATCA+GGG 0.547332 1_1:-79941432 Msa0047230:five_prime_UTR
AAAATCTAATCAATTATGGA+TGG 0.550791 1_1:+79939306 None:intergenic
GTGAATCTGCTAGAAGATCC+AGG 0.554001 1_1:-79940317 Msa0047230:CDS
TCCACAAGGCTGTGGAACAC+TGG 0.554932 1_1:+79940548 None:intergenic
GAGCTTATAGATGAGATTGA+AGG 0.560073 1_1:+79942048 None:intergenic
TTGAAAGTGCTGAGCTAGCG+TGG 0.561226 1_1:-79941396 Msa0047230:five_prime_UTR
CCAGTGCTGCAGAAAATGGT+TGG 0.563429 1_1:-79940633 Msa0047230:CDS
GAAGCGATGGCAACACTACA+GGG 0.570248 1_1:-79941189 Msa0047230:five_prime_UTR
TATGTACACAGAAATATCAA+TGG 0.574563 1_1:+79941740 None:intergenic
ATTTCATAGGCTACAAAGCA+TGG 0.577216 1_1:-79939685 Msa0047230:three_prime_UTR
GTGAGCTGAAACGTGAGAGG+AGG 0.579172 1_1:-79940353 Msa0047230:CDS
TTACTTGAACAGATGGAGAA+GGG 0.588445 1_1:-79940729 Msa0047230:intron
ATTACTTGAACAGATGGAGA+AGG 0.590419 1_1:-79940730 Msa0047230:intron
TGACCACATCACTGGAACTG+AGG 0.592621 1_1:-79940590 Msa0047230:CDS
ACAAGGCTGTGGAACACTGG+TGG 0.593279 1_1:+79940551 None:intergenic
TGTGAACGGCATTGACAAGA+GGG 0.593449 1_1:-79939427 Msa0047230:three_prime_UTR
ACTTCCAGTAATGGAAGCGA+TGG 0.593651 1_1:-79941202 Msa0047230:five_prime_UTR
TACAAATGTCAATGCCGTGC+TGG 0.596419 1_1:-79939588 Msa0047230:three_prime_UTR
GTTCCTCAGTTCCAGTGATG+TGG 0.596954 1_1:+79940587 None:intergenic
GAACAAACCTCAGTGATAGC+CGG 0.601771 1_1:+79941364 None:intergenic
TAAAAGCTACTTCAAAACAA+AGG 0.604078 1_1:+79941975 None:intergenic
GGGCTCCAGACTTCCAGTAA+TGG 0.604188 1_1:-79941211 Msa0047230:five_prime_UTR
ACACTGGTGGAAATAGGCGA+AGG 0.605436 1_1:+79940564 None:intergenic
CGACATTGACACATCATCAC+CGG 0.607876 1_1:-79939646 Msa0047230:three_prime_UTR
TATCAACAGTGTGGATACTG+AGG 0.615133 1_1:-79941232 Msa0047230:intron
ATAGATGAGATTGAAGGTGT+AGG 0.618296 1_1:+79942054 None:intergenic
GTCATACCTGAAGAAAGTAC+AGG 0.620947 1_1:+79940609 None:intergenic
TATGAACATCACAGATGACC+AGG 0.623111 1_1:+79941777 None:intergenic
AGAGTGAGCTGAAACGTGAG+AGG 0.623183 1_1:-79940356 Msa0047230:CDS
TTGTGAACGGCATTGACAAG+AGG 0.625018 1_1:-79939428 Msa0047230:three_prime_UTR
AGTGCTGAGCTAGCGTGGAG+AGG 0.630683 1_1:-79941391 Msa0047230:five_prime_UTR
CATTGACAAGAGGGCTACAG+AGG 0.633228 1_1:-79939418 Msa0047230:three_prime_UTR
ACCTGCATCCAAGCTTCAGG+AGG 0.636392 1_1:+79940519 None:intergenic
AAAGCATGGACACAGACACT+GGG 0.645560 1_1:-79939671 Msa0047230:three_prime_UTR
ATATAAACATTCAACCACAA+AGG 0.654190 1_1:+79941639 None:intergenic
GCTGAGTTGAAATATGGTGG+TGG 0.656136 1_1:+79941807 None:intergenic
TTCTGTGAGAACAAACCCAA+CGG 0.657855 1_1:-79939384 Msa0047230:three_prime_UTR
TCAGGAGGCAAAACTCCACA+AGG 0.658647 1_1:+79940534 None:intergenic
ATCAACAGTGTGGATACTGA+GGG 0.658895 1_1:-79941231 Msa0047230:intron
ACAGAAGAGATAATTGTGAA+CGG 0.661430 1_1:-79939441 Msa0047230:three_prime_UTR
CACTGGTGGAAATAGGCGAA+GGG 0.662789 1_1:+79940565 None:intergenic
GAAACAATGTAGATTGTAGG+GGG 0.675591 1_1:-79939275 Msa0047230:three_prime_UTR
TCATGTGTCTGACACCAGCA+CGG 0.677223 1_1:+79939574 None:intergenic
GCAGCTGAGTTGAAATATGG+TGG 0.711269 1_1:+79941804 None:intergenic
TTGGTCCATGAATGTAGACA+AGG 0.721265 1_1:+79942023 None:intergenic
AGGAAAACCGGCTATCACTG+AGG 0.727206 1_1:-79941371 Msa0047230:intron
AAGCGATGGCAACACTACAG+GGG 0.742066 1_1:-79941188 Msa0047230:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTACATTCAATTTTTT+TGG - chr1_1:79940615-79940634 Msa0047230:CDS 10.0%
!! ACATAAAATTATTTATATCT+TGG - chr1_1:79941725-79941744 Msa0047230:five_prime_UTR 10.0%
!! TTATAAATAAAGTACATAAC+CGG + chr1_1:79940302-79940321 None:intergenic 15.0%
!! TTTCAAAATCTAATCAATTA+TGG + chr1_1:79942135-79942154 None:intergenic 15.0%
!!! TTTTAAAATTGTAATATCGT+AGG + chr1_1:79942198-79942217 None:intergenic 15.0%
!!! TTTAGAATCTAAAAATTGAT+CGG - chr1_1:79942237-79942256 Msa0047230:five_prime_UTR 15.0%
!! CCTATATTACTAATTATGTA+TGG + chr1_1:79939157-79939176 None:intergenic 20.0%
!! CCATACATAATTAGTAATAT+AGG - chr1_1:79939154-79939173 Msa0047230:three_prime_UTR 20.0%
!! TTAGTAATATAGGATAATTC+AGG - chr1_1:79939164-79939183 Msa0047230:three_prime_UTR 20.0%
!!! AATGTGTTTTCTTACAAAAA+AGG - chr1_1:79939304-79939323 Msa0047230:three_prime_UTR 20.0%
!!! AAGCAAAAGTAGTTTTTAAT+GGG + chr1_1:79939549-79939568 None:intergenic 20.0%
!!! AAAGCAAAAGTAGTTTTTAA+TGG + chr1_1:79939550-79939569 None:intergenic 20.0%
!! TACATATGAATATGTTATAC+TGG - chr1_1:79939711-79939730 Msa0047230:exon 20.0%
!! GTACTTATGAATTATATTCA+AGG - chr1_1:79939820-79939839 Msa0047230:CDS 20.0%
!! TATAAATAAAGTACATAACC+GGG + chr1_1:79940301-79940320 None:intergenic 20.0%
!!! ATTTTCATGCTTCAATTTTT+CGG + chr1_1:79940329-79940348 None:intergenic 20.0%
!! ATAAACAATACTAGTTATTC+TGG - chr1_1:79940400-79940419 Msa0047230:intron 20.0%
!! TAATCAGAAATTTAAAAGCA+TGG + chr1_1:79940553-79940572 None:intergenic 20.0%
!!! TCAATTTTTTTGGTTTCATA+AGG - chr1_1:79940625-79940644 Msa0047230:CDS 20.0%
!! TGAAAACAACTTATAGAATA+TGG - chr1_1:79941371-79941390 Msa0047230:intron 20.0%
!! AAAGAAAATGTTATCACAAA+AGG - chr1_1:79941530-79941549 Msa0047230:intron 20.0%
!! GAGTCAAAATTATCTATAAT+TGG + chr1_1:79941941-79941960 None:intergenic 20.0%
!!! ATTATAGATAATTTTGACTC+AGG - chr1_1:79941941-79941960 Msa0047230:intron 20.0%
!! AAAATCTAATCAATTATGGA+TGG + chr1_1:79942131-79942150 None:intergenic 20.0%
!!! TTAAAAACCCTTCATTTTTT+CGG - chr1_1:79942212-79942231 Msa0047230:five_prime_UTR 20.0%
!! AAAGAAATTCACTTATATGT+AGG - chr1_1:79942281-79942300 Msa0047230:five_prime_UTR 20.0%
!! TATGTATGGAGTATCTAATT+TGG + chr1_1:79939143-79939162 None:intergenic 25.0%
!!! CATTGTTTTTGATATTGTGT+TGG + chr1_1:79939433-79939452 None:intergenic 25.0%
! TAAAAGCTACTTCAAAACAA+AGG + chr1_1:79939462-79939481 None:intergenic 25.0%
! TATGTACACAGAAATATCAA+TGG + chr1_1:79939697-79939716 None:intergenic 25.0%
! ATATAAACATTCAACCACAA+AGG + chr1_1:79939798-79939817 None:intergenic 25.0%
! AAAAAATCAAAACTTACAGC+AGG + chr1_1:79939859-79939878 None:intergenic 25.0%
! ATCATAATTTACGGTATTCA+GGG + chr1_1:79939919-79939938 None:intergenic 25.0%
! GTCAAATCCATCATAATTTA+CGG + chr1_1:79939928-79939947 None:intergenic 25.0%
!!! TGGCTATTATAATTTTTTCC+CGG - chr1_1:79940280-79940299 Msa0047230:intron 25.0%
!! TTTTCATGCTTCAATTTTTC+GGG + chr1_1:79940328-79940347 None:intergenic 25.0%
!!! TTATTTGTCACGTGTTTTTA+TGG - chr1_1:79941208-79941227 Msa0047230:five_prime_UTR 25.0%
!!! TATTTGTCACGTGTTTTTAT+GGG - chr1_1:79941209-79941228 Msa0047230:five_prime_UTR 25.0%
!! TTAAGTTGTTTATCCAAACA+CGG - chr1_1:79941480-79941499 Msa0047230:intron 25.0%
!! GTGATAACATTTTCTTTCAA+GGG + chr1_1:79941527-79941546 None:intergenic 25.0%
!! TGTGATAACATTTTCTTTCA+AGG + chr1_1:79941528-79941547 None:intergenic 25.0%
! TTTATATCTTGGCATTTCAT+AGG - chr1_1:79941736-79941755 Msa0047230:five_prime_UTR 25.0%
! CTATTTAGTCAAATTATCAC+CGG + chr1_1:79941810-79941829 None:intergenic 25.0%
! CTAAAATCCGAAAAAATGAA+GGG + chr1_1:79942222-79942241 None:intergenic 25.0%
!! TCTAAAATCCGAAAAAATGA+AGG + chr1_1:79942223-79942242 None:intergenic 25.0%
! AATTCACTTATATGTAGGTA+TGG - chr1_1:79942286-79942305 Msa0047230:five_prime_UTR 25.0%
GTTTCAATGGAAAGAGAATA+TGG + chr1_1:79939358-79939377 None:intergenic 30.0%
ATGTATCTTCAGGCATATTA+TGG - chr1_1:79939588-79939607 Msa0047230:three_prime_UTR 30.0%
TGTATCTTCAGGCATATTAT+GGG - chr1_1:79939589-79939608 Msa0047230:three_prime_UTR 30.0%
TCATAATTTACGGTATTCAG+GGG + chr1_1:79939918-79939937 None:intergenic 30.0%
CATCATAATTTACGGTATTC+AGG + chr1_1:79939920-79939939 None:intergenic 30.0%
CTGAATACCGTAAATTATGA+TGG - chr1_1:79939918-79939937 Msa0047230:intron 30.0%
!! AAATTATGATGGATTTGACC+TGG - chr1_1:79939929-79939948 Msa0047230:intron 30.0%
!! AATTATGATGGATTTGACCT+GGG - chr1_1:79939930-79939949 Msa0047230:intron 30.0%
GATATATCATATCAACAGTG+TGG - chr1_1:79940193-79940212 Msa0047230:intron 30.0%
! CATTGGTCTGTTTATAACAT+TGG + chr1_1:79940357-79940376 None:intergenic 30.0%
CAATGTTATAAACAGACCAA+TGG - chr1_1:79940355-79940374 Msa0047230:CDS 30.0%
AGTATTGTTTATCATACCAG+TGG + chr1_1:79940392-79940411 None:intergenic 30.0%
CTGGATTACAAATATACTTC+TGG - chr1_1:79940419-79940438 Msa0047230:intron 30.0%
CCTTATCATGCATTAACAAT+TGG + chr1_1:79940522-79940541 None:intergenic 30.0%
CCAATTGTTAATGCATGATA+AGG - chr1_1:79940519-79940538 Msa0047230:intron 30.0%
ATGTAATTAACTCTCAAACG+AGG + chr1_1:79940605-79940624 None:intergenic 30.0%
GTACTAATTACTTGAACAGA+TGG - chr1_1:79940698-79940717 Msa0047230:CDS 30.0%
TTTAGTGTCAGTAAAAGACA+AGG + chr1_1:79941029-79941048 None:intergenic 30.0%
ACTGACACTAAAGTAATTCT+TGG - chr1_1:79941037-79941056 Msa0047230:intron 30.0%
!! TTTTATGGGTTTGTTTGGAT+TGG - chr1_1:79941223-79941242 Msa0047230:five_prime_UTR 30.0%
TAAACACATATGAGACTGTT+CGG - chr1_1:79941270-79941289 Msa0047230:intron 30.0%
AATAAGCTGAAAAGAGCTTA+TGG + chr1_1:79941326-79941345 None:intergenic 30.0%
GAAATCGGAAATGAATGAAT+TGG - chr1_1:79941649-79941668 Msa0047230:five_prime_UTR 30.0%
ACAGAAGAGATAATTGTGAA+CGG - chr1_1:79941993-79942012 Msa0047230:five_prime_UTR 30.0%
ACTGAAACAATGTAGATTGT+AGG - chr1_1:79942156-79942175 Msa0047230:five_prime_UTR 30.0%
CTGAAACAATGTAGATTGTA+GGG - chr1_1:79942157-79942176 Msa0047230:five_prime_UTR 30.0%
TGAAACAATGTAGATTGTAG+GGG - chr1_1:79942158-79942177 Msa0047230:five_prime_UTR 30.0%
TATATGTAGGTATGGCAAAA+TGG - chr1_1:79942294-79942313 Msa0047230:five_prime_UTR 30.0%
! GTGGAGTATTCTTTATCGAT+TGG + chr1_1:79939333-79939352 None:intergenic 35.0%
ATGGAAAGAGAATATGGTTG+TGG + chr1_1:79939352-79939371 None:intergenic 35.0%
! ATAGATGAGATTGAAGGTGT+AGG + chr1_1:79939383-79939402 None:intergenic 35.0%
GAGCTTATAGATGAGATTGA+AGG + chr1_1:79939389-79939408 None:intergenic 35.0%
TGTCTGTTGTATGTATCTTC+AGG - chr1_1:79939578-79939597 Msa0047230:three_prime_UTR 35.0%
CTTAATGTACCAAACCTTTG+TGG - chr1_1:79939781-79939800 Msa0047230:CDS 35.0%
AACATTCAACCACAAAGGTT+TGG + chr1_1:79939793-79939812 None:intergenic 35.0%
!! ATTATGATGGATTTGACCTG+GGG - chr1_1:79939931-79939950 Msa0047230:intron 35.0%
GTGTTTCCAGATGATTTAGT+TGG + chr1_1:79939996-79940015 None:intergenic 35.0%
TTTATCATACCAGTGGTTGT+TGG + chr1_1:79940385-79940404 None:intergenic 35.0%
TCAATGAATTGTTGACACCA+CGG + chr1_1:79940473-79940492 None:intergenic 35.0%
GAATCATTTGATACCAAGAC+TGG - chr1_1:79940577-79940596 Msa0047230:CDS 35.0%
ATTACTTGAACAGATGGAGA+AGG - chr1_1:79940704-79940723 Msa0047230:CDS 35.0%
TTACTTGAACAGATGGAGAA+GGG - chr1_1:79940705-79940724 Msa0047230:CDS 35.0%
!! CGTGTTTTTATGGGTTTGTT+TGG - chr1_1:79941218-79941237 Msa0047230:five_prime_UTR 35.0%
CTTATTTCCATAAGCTCTTC+AGG - chr1_1:79941340-79941359 Msa0047230:intron 35.0%
AAACTATCCTGAAGAGCTTA+TGG + chr1_1:79941350-79941369 None:intergenic 35.0%
ATTTCATAGGCTACAAAGCA+TGG - chr1_1:79941749-79941768 Msa0047230:five_prime_UTR 35.0%
AAACCCAACGGCATTATTAT+AGG - chr1_1:79942062-79942081 Msa0047230:five_prime_UTR 35.0%
AACCCAACGGCATTATTATA+GGG - chr1_1:79942063-79942082 Msa0047230:five_prime_UTR 35.0%
AACCCTATAATAATGCCGTT+GGG + chr1_1:79942068-79942087 None:intergenic 35.0%
TAACCCTATAATAATGCCGT+TGG + chr1_1:79942069-79942088 None:intergenic 35.0%
GAAACAATGTAGATTGTAGG+GGG - chr1_1:79942159-79942178 Msa0047230:five_prime_UTR 35.0%
CTCATCCTTGTCTACATTCA+TGG - chr1_1:79939406-79939425 Msa0047230:three_prime_UTR 40.0%
TTGGTCCATGAATGTAGACA+AGG + chr1_1:79939414-79939433 None:intergenic 40.0%
!!! CCAAGCTTTTTTACGTACAG+AGG + chr1_1:79939486-79939505 None:intergenic 40.0%
CCTCTGTACGTAAAAAAGCT+TGG - chr1_1:79939483-79939502 Msa0047230:three_prime_UTR 40.0%
CGTAAAAAAGCTTGGCCAAT+CGG - chr1_1:79939491-79939510 Msa0047230:three_prime_UTR 40.0%
TATGAACATCACAGATGACC+AGG + chr1_1:79939660-79939679 None:intergenic 40.0%
AAACTTACAGCAGGTGAAGA+TGG + chr1_1:79939850-79939869 None:intergenic 40.0%
!! TTATGATGGATTTGACCTGG+GGG - chr1_1:79939932-79939951 Msa0047230:intron 40.0%
GAGACACCAACTAAATCATC+TGG - chr1_1:79939987-79940006 Msa0047230:intron 40.0%
ATCATCTGGAAACACTGATC+AGG - chr1_1:79940001-79940020 Msa0047230:intron 40.0%
TCATCTGGAAACACTGATCA+GGG - chr1_1:79940002-79940021 Msa0047230:intron 40.0%
! ATAGGAAGTGCAGTTGATTC+TGG + chr1_1:79940109-79940128 None:intergenic 40.0%
!! TACGAGTTTGTTGCTCTGTT+AGG - chr1_1:79940140-79940159 Msa0047230:intron 40.0%
TATCAACAGTGTGGATACTG+AGG - chr1_1:79940202-79940221 Msa0047230:intron 40.0%
ATCAACAGTGTGGATACTGA+GGG - chr1_1:79940203-79940222 Msa0047230:intron 40.0%
! GATAACTGACACCGTCTTTT+TGG + chr1_1:79940777-79940796 None:intergenic 40.0%
! GTCATACCTGAAGAAAGTAC+AGG + chr1_1:79940828-79940847 None:intergenic 40.0%
TTCAGCTCACTCTCATTCTA+AGG + chr1_1:79941071-79941090 None:intergenic 40.0%
CGTTCTTATCTCCTCTATAC+AGG - chr1_1:79941568-79941587 Msa0047230:intron 40.0%
CGATTTCAGCACCAAATTCT+CGG + chr1_1:79941636-79941655 None:intergenic 40.0%
!! CGAGAATTTGGTGCTGAAAT+CGG - chr1_1:79941634-79941653 Msa0047230:five_prime_UTR 40.0%
!!! AATTTTGACTCAGGAGAAGC+TGG - chr1_1:79941950-79941969 Msa0047230:intron 40.0%
GAAGCTGGAAAACACTCAAT+TGG - chr1_1:79941965-79941984 Msa0047230:intron 40.0%
TTCTGTGAGAACAAACCCAA+CGG - chr1_1:79942050-79942069 Msa0047230:five_prime_UTR 40.0%
! GAAGGTGTAGGTCGTTTCAA+TGG + chr1_1:79939371-79939390 None:intergenic 45.0%
GAAAGCAATCTGTGACCGAT+TGG + chr1_1:79939509-79939528 None:intergenic 45.0%
! GCTGAGTTGAAATATGGTGG+TGG + chr1_1:79939630-79939649 None:intergenic 45.0%
! GCAGCTGAGTTGAAATATGG+TGG + chr1_1:79939633-79939652 None:intergenic 45.0%
! GCAGCAGCTGAGTTGAAATA+TGG + chr1_1:79939636-79939655 None:intergenic 45.0%
CAGGGGATGATGTAAAGCTT+CGG + chr1_1:79939901-79939920 None:intergenic 45.0%
! GTTGGTGTCTCTATGCTTGT+AGG + chr1_1:79939978-79939997 None:intergenic 45.0%
GAACAAACCTCAGTGATAGC+CGG + chr1_1:79940073-79940092 None:intergenic 45.0%
ACTCGTAGAGCAAGGAAGAT+AGG + chr1_1:79940127-79940146 None:intergenic 45.0%
AGCAACAAACTCGTAGAGCA+AGG + chr1_1:79940135-79940154 None:intergenic 45.0%
! ACTTCCAGTAATGGAAGCGA+TGG - chr1_1:79940232-79940251 Msa0047230:intron 45.0%
CTACAGGGGTGAGAAATTTC+TGG - chr1_1:79940260-79940279 Msa0047230:intron 45.0%
! AGTGGTTGTTGGTGTTCCAT+TGG + chr1_1:79940374-79940393 None:intergenic 45.0%
AATGGAACACCAACAACCAC+TGG - chr1_1:79940373-79940392 Msa0047230:intron 45.0%
GTCATGAATGACTGTAACCG+TGG - chr1_1:79940453-79940472 Msa0047230:intron 45.0%
!! TGACACCGTCTTTTTGGAAG+CGG + chr1_1:79940771-79940790 None:intergenic 45.0%
GTTGGACCTGTACTTTCTTC+AGG - chr1_1:79940819-79940838 Msa0047230:intron 45.0%
TTCAGGTATGACCACATCAC+TGG - chr1_1:79940836-79940855 Msa0047230:intron 45.0%
TGTGGAACACTGGTGGAAAT+AGG + chr1_1:79940879-79940898 None:intergenic 45.0%
GTGAATCTGCTAGAAGATCC+AGG - chr1_1:79941117-79941136 Msa0047230:intron 45.0%
GAGCATATAGAACCAGCGTA+TGG - chr1_1:79941295-79941314 Msa0047230:intron 45.0%
TATAGAACCAGCGTATGGCA+TGG - chr1_1:79941300-79941319 Msa0047230:intron 45.0%
GGCTACATGTACATGCATCA+GGG + chr1_1:79941506-79941525 None:intergenic 45.0%
TATCTCCTCTATACAGGCTG+AGG - chr1_1:79941574-79941593 Msa0047230:intron 45.0%
!! TGCATTGACTGCCGAGAATT+TGG - chr1_1:79941622-79941641 Msa0047230:five_prime_UTR 45.0%
AAAGCATGGACACAGACACT+GGG - chr1_1:79941763-79941782 Msa0047230:five_prime_UTR 45.0%
CGACATTGACACATCATCAC+CGG - chr1_1:79941788-79941807 Msa0047230:five_prime_UTR 45.0%
TACAAATGTCAATGCCGTGC+TGG - chr1_1:79941846-79941865 Msa0047230:intron 45.0%
!! TTGTGAACGGCATTGACAAG+AGG - chr1_1:79942006-79942025 Msa0047230:five_prime_UTR 45.0%
!! TGTGAACGGCATTGACAAGA+GGG - chr1_1:79942007-79942026 Msa0047230:five_prime_UTR 45.0%
AGGGCTACAGAGGAAGAAAA+TGG - chr1_1:79942026-79942045 Msa0047230:five_prime_UTR 45.0%
AGATTGTAGGGGGTCTCTAA+TGG - chr1_1:79942169-79942188 Msa0047230:five_prime_UTR 45.0%
TCGGCGAGAAACTTGATAGA+TGG - chr1_1:79942256-79942275 Msa0047230:five_prime_UTR 45.0%
CGGCGAGAAACTTGATAGAT+GGG - chr1_1:79942257-79942276 Msa0047230:five_prime_UTR 45.0%
!! TTGAAAGTGCTGAGCTAGCG+TGG - chr1_1:79940038-79940057 Msa0047230:intron 50.0%
AGGAAAACCGGCTATCACTG+AGG - chr1_1:79940063-79940082 Msa0047230:intron 50.0%
GTTGCTCTGTTAGGTTCGTG+TGG - chr1_1:79940149-79940168 Msa0047230:intron 50.0%
CGCTTCCATTACTGGAAGTC+TGG + chr1_1:79940231-79940250 None:intergenic 50.0%
GTTGCCATCGCTTCCATTAC+TGG + chr1_1:79940239-79940258 None:intergenic 50.0%
GAAGCGATGGCAACACTACA+GGG - chr1_1:79940245-79940264 Msa0047230:intron 50.0%
AAGCGATGGCAACACTACAG+GGG - chr1_1:79940246-79940265 Msa0047230:intron 50.0%
TTTGGAAGCGGCAGTCTCTT+TGG + chr1_1:79940759-79940778 None:intergenic 50.0%
! GACTGCCGCTTCCAAAAAGA+CGG - chr1_1:79940763-79940782 Msa0047230:intron 50.0%
GCAACCAGTGCTGCAGAAAA+TGG - chr1_1:79940797-79940816 Msa0047230:intron 50.0%
! CCAACCATTTTCTGCAGCAC+TGG + chr1_1:79940804-79940823 None:intergenic 50.0%
CCAGTGCTGCAGAAAATGGT+TGG - chr1_1:79940801-79940820 Msa0047230:intron 50.0%
TGACCACATCACTGGAACTG+AGG - chr1_1:79940844-79940863 Msa0047230:intron 50.0%
GTTCCTCAGTTCCAGTGATG+TGG + chr1_1:79940850-79940869 None:intergenic 50.0%
CACTGGTGGAAATAGGCGAA+GGG + chr1_1:79940872-79940891 None:intergenic 50.0%
ACACTGGTGGAAATAGGCGA+AGG + chr1_1:79940873-79940892 None:intergenic 50.0%
TCAGGAGGCAAAACTCCACA+AGG + chr1_1:79940903-79940922 None:intergenic 50.0%
! GAGTTTTGCCTCCTGAAGCT+TGG - chr1_1:79940907-79940926 Msa0047230:intron 50.0%
AGTACCTGCATCCAAGCTTC+AGG + chr1_1:79940921-79940940 None:intergenic 50.0%
AGAGTGAGCTGAAACGTGAG+AGG - chr1_1:79941078-79941097 Msa0047230:intron 50.0%
CTGCTAGAAGATCCAGGCTT+AGG - chr1_1:79941123-79941142 Msa0047230:intron 50.0%
GAAGATCCAGGCTTAGGCTT+AGG - chr1_1:79941129-79941148 Msa0047230:intron 50.0%
TTGCTTCCTAAGCCTAAGCC+TGG + chr1_1:79941138-79941157 None:intergenic 50.0%
GGGCTACATGTACATGCATC+AGG + chr1_1:79941507-79941526 None:intergenic 50.0%
TTCAGCCTCAGCCTGTATAG+AGG + chr1_1:79941582-79941601 None:intergenic 50.0%
ACAGGCTGAGGCTGAAGAAT+TGG - chr1_1:79941586-79941605 Msa0047230:intron 50.0%
CAAAGCATGGACACAGACAC+TGG - chr1_1:79941762-79941781 Msa0047230:five_prime_UTR 50.0%
TCATGTGTCTGACACCAGCA+CGG + chr1_1:79941863-79941882 None:intergenic 50.0%
CATTGACAAGAGGGCTACAG+AGG - chr1_1:79942016-79942035 Msa0047230:five_prime_UTR 50.0%
TTCAACTCAGCTGCTGCTCC+TGG - chr1_1:79939639-79939658 Msa0047230:three_prime_UTR 55.0%
GCTAGCGTGGAGAGGAAAAC+CGG - chr1_1:79940051-79940070 Msa0047230:intron 55.0%
GGGCTCCAGACTTCCAGTAA+TGG - chr1_1:79940223-79940242 Msa0047230:intron 55.0%
GGAAGCGATGGCAACACTAC+AGG - chr1_1:79940244-79940263 Msa0047230:intron 55.0%
! CTCAAACGAGGTGCCAGTCT+TGG + chr1_1:79940593-79940612 None:intergenic 55.0%
ACAAGGCTGTGGAACACTGG+TGG + chr1_1:79940886-79940905 None:intergenic 55.0%
ACCAGTGTTCCACAGCCTTG+TGG - chr1_1:79940885-79940904 Msa0047230:intron 55.0%
TCCACAAGGCTGTGGAACAC+TGG + chr1_1:79940889-79940908 None:intergenic 55.0%
GGCAAAACTCCACAAGGCTG+TGG + chr1_1:79940897-79940916 None:intergenic 55.0%
ACCTGCATCCAAGCTTCAGG+AGG + chr1_1:79940918-79940937 None:intergenic 55.0%
GTGAGCTGAAACGTGAGAGG+AGG - chr1_1:79941081-79941100 Msa0047230:intron 55.0%
CTTATGGCCATGCCATACGC+TGG + chr1_1:79941310-79941329 None:intergenic 55.0%
ACATGCATCAGGGCCGTGTT+TGG + chr1_1:79941496-79941515 None:intergenic 55.0%
GCAGCGACGCGTCATATTGA+AGG + chr1_1:79941893-79941912 None:intergenic 55.0%
TGACCTGGGGGAAACTACGC+AGG - chr1_1:79939944-79939963 Msa0047230:intron 60.0%
! AGTGCTGAGCTAGCGTGGAG+AGG - chr1_1:79940043-79940062 Msa0047230:intron 60.0%
GCCTCCTGAAGCTTGGATGC+AGG - chr1_1:79940914-79940933 Msa0047230:intron 60.0%
CAGCCTGCGTAGTTTCCCCC+AGG + chr1_1:79939950-79939969 None:intergenic 65.0%
CTGGGGGAAACTACGCAGGC+TGG - chr1_1:79939948-79939967 Msa0047230:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 79939133 79942323 79939133 ID=Msa0047230;Name=Msa0047230
chr1_1 mRNA 79939133 79942323 79939133 ID=Msa0047230-mRNA-1;Parent=Msa0047230;Name=Msa0047230-mRNA-1;_AED=0.19;_eAED=0.19;_QI=793|1|1|1|0.33|0.42|7|593|147
chr1_1 exon 79939133 79939866 79939133 ID=Msa0047230-mRNA-1:exon:27623;Parent=Msa0047230-mRNA-1
chr1_1 exon 79940299 79940382 79940299 ID=Msa0047230-mRNA-1:exon:27622;Parent=Msa0047230-mRNA-1
chr1_1 exon 79940521 79940739 79940521 ID=Msa0047230-mRNA-1:exon:27621;Parent=Msa0047230-mRNA-1
chr1_1 exon 79941189 79941245 79941189 ID=Msa0047230-mRNA-1:exon:27620;Parent=Msa0047230-mRNA-1
chr1_1 exon 79941372 79941490 79941372 ID=Msa0047230-mRNA-1:exon:27619;Parent=Msa0047230-mRNA-1
chr1_1 exon 79941595 79941856 79941595 ID=Msa0047230-mRNA-1:exon:27618;Parent=Msa0047230-mRNA-1
chr1_1 exon 79941969 79942323 79941969 ID=Msa0047230-mRNA-1:exon:27617;Parent=Msa0047230-mRNA-1
chr1_1 five_prime_UTR 79941969 79942323 79941969 ID=Msa0047230-mRNA-1:five_prime_utr;Parent=Msa0047230-mRNA-1
chr1_1 five_prime_UTR 79941595 79941856 79941595 ID=Msa0047230-mRNA-1:five_prime_utr;Parent=Msa0047230-mRNA-1
chr1_1 five_prime_UTR 79941372 79941490 79941372 ID=Msa0047230-mRNA-1:five_prime_utr;Parent=Msa0047230-mRNA-1
chr1_1 five_prime_UTR 79941189 79941245 79941189 ID=Msa0047230-mRNA-1:five_prime_utr;Parent=Msa0047230-mRNA-1
chr1_1 CDS 79940521 79940739 79940521 ID=Msa0047230-mRNA-1:cds;Parent=Msa0047230-mRNA-1
chr1_1 CDS 79940299 79940382 79940299 ID=Msa0047230-mRNA-1:cds;Parent=Msa0047230-mRNA-1
chr1_1 CDS 79939726 79939866 79939726 ID=Msa0047230-mRNA-1:cds;Parent=Msa0047230-mRNA-1
chr1_1 three_prime_UTR 79939133 79939725 79939133 ID=Msa0047230-mRNA-1:three_prime_utr;Parent=Msa0047230-mRNA-1
Gene Sequence

>Msa0047230

ATGGAGAAGGGAAAACTGAGATGCAAGATAATCAAGTTTCCAAAGAGACTGCCGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAATGGTTGGACCTGTACTTTCTTCAGGTATGACCACATCACTGGAACTGAGGAACCCTTCGCCTATTTCCACCAGTGTTCCACAGCCTTGTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGAATGAGAGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGATCCAGGCTTAGGCTTAGGAAGCAAGCTGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCCGAGAATTTGGTGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCTGAGAAGCTGAAGATTGAAAATGCTACATTAAAGATAATGCACACATAA

Protein sequence

>Msa0047230

MEKGKLRCKIIKFPKRLPLPKRRCQLSQPVLQKMVGPVLSSGMTTSLELRNPSPISTSVPQPCGVLPPEAWMQNESELKRERRKQSNRESARRSRLRLRKQAEAEELARRVDALTAENLVLKSEMNELAENSEKLKIENATLKIMHT*