Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0047230 | sp|Q99142|TAF1_TOBAC | 66.102 | 118 | 33 | 2 | 30 | 142 | 142 | 257 | 1.12e-39 | 137 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0047230 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000180 | Msa0047230 | 0.801936 | 7.116392e-49 | -8.615850e-47 |
Msa0005690 | Msa0047230 | 0.805276 | 1.443255e-49 | -8.615850e-47 |
Msa0021980 | Msa0047230 | 0.861843 | 7.715376e-64 | -8.615850e-47 |
Msa0022230 | Msa0047230 | 0.804391 | 2.209520e-49 | -8.615850e-47 |
Msa0026120 | Msa0047230 | 0.826867 | 2.143677e-54 | -8.615850e-47 |
Msa0036990 | Msa0047230 | 0.807058 | 6.084080e-50 | -8.615850e-47 |
Msa0044320 | Msa0047230 | 0.810134 | 1.340507e-50 | -8.615850e-47 |
Msa0047230 | Msa0053480 | 0.831044 | 2.086793e-55 | -8.615850e-47 |
Msa0047230 | Msa0053960 | 0.843059 | 1.768662e-58 | -8.615850e-47 |
Msa0047230 | Msa0063850 | 0.819888 | 9.167021e-53 | -8.615850e-47 |
Msa0047230 | Msa0072710 | 0.805831 | 1.103773e-49 | -8.615850e-47 |
Msa0047230 | Msa0081840 | 0.804792 | 1.822187e-49 | -8.615850e-47 |
Msa0047230 | Msa0089010 | 0.803999 | 2.665903e-49 | -8.615850e-47 |
Msa0047230 | Msa0090350 | 0.853339 | 2.550278e-61 | -8.615850e-47 |
Msa0047230 | Msa0112800 | 0.824176 | 9.302515e-54 | -8.615850e-47 |
Msa0047230 | Msa0114960 | 0.807692 | 4.464967e-50 | -8.615850e-47 |
Msa0047230 | Msa0117300 | 0.832329 | 1.005884e-55 | -8.615850e-47 |
Msa0047230 | Msa0127210 | 0.805479 | 1.308908e-49 | -8.615850e-47 |
Msa0047230 | Msa0130100 | 0.816794 | 4.600893e-52 | -8.615850e-47 |
Msa0047230 | Msa0136580 | 0.813077 | 3.072483e-51 | -8.615850e-47 |
Msa0047230 | Msa0137810 | 0.808794 | 2.600075e-50 | -8.615850e-47 |
Msa0047230 | Msa0139280 | 0.804173 | 2.452917e-49 | -8.615850e-47 |
Msa0047230 | Msa0143280 | 0.823543 | 1.309276e-53 | -8.615850e-47 |
Msa0047230 | Msa0148430 | 0.834535 | 2.834397e-56 | -8.615850e-47 |
Msa0047230 | Msa0153440 | 0.801104 | 1.053690e-48 | -8.615850e-47 |
Msa0047230 | Msa0155500 | 0.828732 | 7.633659e-55 | -8.615850e-47 |
Msa0047230 | Msa0160650 | 0.827959 | 1.172849e-54 | -8.615850e-47 |
Msa0047230 | Msa0164630 | 0.833968 | 3.930681e-56 | -8.615850e-47 |
Msa0047230 | Msa0166580 | 0.829811 | 4.177112e-55 | -8.615850e-47 |
Msa0047230 | Msa0175920 | 0.800656 | 1.301236e-48 | -8.615850e-47 |
Msa0047230 | Msa0181410 | 0.807919 | 3.994187e-50 | -8.615850e-47 |
Msa0047230 | Msa0184030 | 0.859678 | 3.503361e-63 | -8.615850e-47 |
Msa0047230 | Msa0184850 | 0.827197 | 1.786527e-54 | -8.615850e-47 |
Msa0047230 | Msa0206600 | 0.809752 | 1.620032e-50 | -8.615850e-47 |
Msa0047230 | Msa0210870 | 0.815061 | 1.120992e-51 | -8.615850e-47 |
Msa0047230 | Msa0223760 | -0.803621 | 3.194944e-49 | -8.615850e-47 |
Msa0047230 | Msa0251140 | 0.835628 | 1.502082e-56 | -8.615850e-47 |
Msa0047230 | Msa0265620 | 0.940328 | 2.817524e-100 | -8.615850e-47 |
Msa0047230 | Msa0265630 | 0.895520 | 8.863082e-76 | -8.615850e-47 |
Msa0047230 | Msa0266380 | 0.812451 | 4.211999e-51 | -8.615850e-47 |
Msa0047230 | Msa0272420 | 0.835629 | 1.501588e-56 | -8.615850e-47 |
Msa0047230 | Msa0311330 | 0.813968 | 1.956669e-51 | -8.615850e-47 |
Msa0047230 | Msa0312570 | 0.836282 | 1.025044e-56 | -8.615850e-47 |
Msa0047230 | Msa0314980 | 0.803344 | 3.645631e-49 | -8.615850e-47 |
Msa0047230 | Msa0328840 | 0.804223 | 2.395097e-49 | -8.615850e-47 |
Msa0047230 | Msa0340530 | 0.985355 | 2.606779e-163 | -8.615850e-47 |
Msa0047230 | Msa0340870 | 0.812541 | 4.024525e-51 | -8.615850e-47 |
Msa0047230 | Msa0341860 | 0.802268 | 6.081556e-49 | -8.615850e-47 |
Msa0047230 | Msa0343200 | 0.821489 | 3.929065e-53 | -8.615850e-47 |
Msa0047230 | Msa0357090 | 0.819904 | 9.089821e-53 | -8.615850e-47 |
Msa0047230 | Msa0358720 | 0.800989 | 1.112390e-48 | -8.615850e-47 |
Msa0047230 | Msa0365360 | 0.803382 | 3.580020e-49 | -8.615850e-47 |
Msa0047230 | Msa0372990 | 0.840631 | 7.742401e-58 | -8.615850e-47 |
Msa0047230 | Msa0390840 | 0.823691 | 1.208797e-53 | -8.615850e-47 |
Msa0047230 | Msa0408160 | 0.805281 | 1.440279e-49 | -8.615850e-47 |
Msa0047230 | Msa0421390 | 0.817666 | 2.929058e-52 | -8.615850e-47 |
Msa0047230 | Msa0423590 | 0.800798 | 1.217149e-48 | -8.615850e-47 |
Msa0047230 | Msa0431940 | 0.835948 | 1.246151e-56 | -8.615850e-47 |
Msa0047230 | Msa0452010 | 0.820596 | 6.311028e-53 | -8.615850e-47 |
Msa0047230 | Msa0457370 | 0.802928 | 4.444642e-49 | -8.615850e-47 |
Msa0047230 | Msa0459920 | 0.816994 | 4.149390e-52 | -8.615850e-47 |
Msa0047230 | Msa0467710 | 0.821530 | 3.845797e-53 | -8.615850e-47 |
Msa0047230 | Msa0470650 | 0.805014 | 1.637586e-49 | -8.615850e-47 |
Msa0047230 | Msa0492050 | 0.805221 | 1.482433e-49 | -8.615850e-47 |
Msa0047230 | Msa0520810 | 0.820410 | 6.962680e-53 | -8.615850e-47 |
Msa0047230 | Msa0525940 | 0.803267 | 3.782902e-49 | -8.615850e-47 |
Msa0047230 | Msa0535020 | 0.816027 | 6.833091e-52 | -8.615850e-47 |
Msa0047230 | Msa0535050 | 0.812378 | 4.370445e-51 | -8.615850e-47 |
Msa0047230 | Msa0540160 | 0.812383 | 4.359254e-51 | -8.615850e-47 |
Msa0047230 | Msa0544930 | 0.801749 | 7.773677e-49 | -8.615850e-47 |
Msa0047230 | Msa0555510 | 0.867658 | 1.163371e-65 | -8.615850e-47 |
Msa0047230 | Msa0560370 | 0.811533 | 6.676319e-51 | -8.615850e-47 |
Msa0047230 | Msa0561420 | 0.854888 | 9.119019e-62 | -8.615850e-47 |
Msa0047230 | Msa0565150 | 0.800122 | 1.671479e-48 | -8.615850e-47 |
Msa0047230 | Msa0565530 | 0.821694 | 3.522929e-53 | -8.615850e-47 |
Msa0047230 | Msa0565760 | 0.817801 | 2.731293e-52 | -8.615850e-47 |
Msa0047230 | Msa0565860 | 0.819717 | 1.003132e-52 | -8.615850e-47 |
Msa0047230 | Msa0566010 | 0.833464 | 5.253751e-56 | -8.615850e-47 |
Msa0047230 | Msa0575540 | 0.815238 | 1.024256e-51 | -8.615850e-47 |
Msa0047230 | Msa0579170 | 0.825962 | 3.521279e-54 | -8.615850e-47 |
Msa0047230 | Msa0579230 | 0.823400 | 1.414048e-53 | -8.615850e-47 |
Msa0047230 | Msa0589540 | 0.802769 | 4.793268e-49 | -8.615850e-47 |
Msa0047230 | Msa0595240 | 0.801768 | 7.703527e-49 | -8.615850e-47 |
Msa0047230 | Msa0599250 | 0.845393 | 4.175887e-59 | -8.615850e-47 |
Msa0047230 | Msa0604130 | 0.806306 | 8.771500e-50 | -8.615850e-47 |
Msa0047230 | Msa0607410 | 0.803010 | 4.274800e-49 | -8.615850e-47 |
Msa0047230 | Msa0607620 | 0.849669 | 2.788339e-60 | -8.615850e-47 |
Msa0047230 | Msa0608940 | 0.860030 | 2.743958e-63 | -8.615850e-47 |
Msa0047230 | Msa0615430 | 0.841853 | 3.694003e-58 | -8.615850e-47 |
Msa0047230 | Msa0617470 | 0.804117 | 2.519693e-49 | -8.615850e-47 |
Msa0047230 | Msa0618260 | 0.833987 | 3.889516e-56 | -8.615850e-47 |
Msa0047230 | Msa0625440 | 0.833931 | 4.016373e-56 | -8.615850e-47 |
Msa0047230 | Msa0636750 | 0.814774 | 1.298230e-51 | -8.615850e-47 |
Msa0047230 | Msa0636760 | 0.812146 | 4.910083e-51 | -8.615850e-47 |
Msa0047230 | Msa0639880 | 0.856441 | 3.210270e-62 | -8.615850e-47 |
Msa0047230 | Msa0647860 | 0.831474 | 1.635151e-55 | -8.615850e-47 |
Msa0047230 | Msa0648200 | 0.814211 | 1.729537e-51 | -8.615850e-47 |
Msa0047230 | Msa0649530 | 0.866312 | 3.125803e-65 | -8.615850e-47 |
Msa0047230 | Msa0654880 | 0.834969 | 2.203845e-56 | -8.615850e-47 |
Msa0047230 | Msa0657820 | 0.802824 | 4.670293e-49 | -8.615850e-47 |
Msa0047230 | Msa0657860 | 0.822014 | 2.971059e-53 | -8.615850e-47 |
Msa0047230 | Msa0675250 | 0.806689 | 7.282878e-50 | -8.615850e-47 |
Msa0047230 | Msa0684910 | 0.814426 | 1.549774e-51 | -8.615850e-47 |
Msa0047230 | Msa0687320 | 0.814648 | 1.384115e-51 | -8.615850e-47 |
Msa0047230 | Msa0690580 | 0.834610 | 2.713555e-56 | -8.615850e-47 |
Msa0047230 | Msa0691740 | 0.864298 | 1.344839e-64 | -8.615850e-47 |
Msa0047230 | Msa0698480 | 0.845512 | 3.877503e-59 | -8.615850e-47 |
Msa0047230 | Msa0698650 | 0.844891 | 5.710030e-59 | -8.615850e-47 |
Msa0047230 | Msa0700250 | 0.812337 | 4.459808e-51 | -8.615850e-47 |
Msa0047230 | Msa0702200 | 0.805729 | 1.159633e-49 | -8.615850e-47 |
Msa0047230 | Msa0714060 | 0.800417 | 1.455395e-48 | -8.615850e-47 |
Msa0047230 | Msa0718920 | 0.818987 | 1.471393e-52 | -8.615850e-47 |
Msa0047230 | Msa0749150 | 0.822852 | 1.897203e-53 | -8.615850e-47 |
Msa0047230 | Msa0756440 | 0.805465 | 1.317695e-49 | -8.615850e-47 |
Msa0047230 | Msa0756940 | 0.814336 | 1.623053e-51 | -8.615850e-47 |
Msa0047230 | Msa0774560 | 0.831521 | 1.592127e-55 | -8.615850e-47 |
Msa0047230 | Msa0791120 | 0.830331 | 3.119752e-55 | -8.615850e-47 |
Msa0047230 | Msa0792880 | 0.821887 | 3.178718e-53 | -8.615850e-47 |
Msa0047230 | Msa0814780 | 0.811100 | 8.287850e-51 | -8.615850e-47 |
Msa0047230 | Msa0828900 | 0.828813 | 7.295883e-55 | -8.615850e-47 |
Msa0047230 | Msa0829430 | 0.819874 | 9.233858e-53 | -8.615850e-47 |
Msa0047230 | Msa0835550 | 0.821098 | 4.836342e-53 | -8.615850e-47 |
Msa0047230 | Msa0836510 | 0.815733 | 7.948310e-52 | -8.615850e-47 |
Msa0047230 | Msa0849290 | 0.811763 | 5.948508e-51 | -8.615850e-47 |
Msa0047230 | Msa0868040 | 0.812580 | 3.947535e-51 | -8.615850e-47 |
Msa0047230 | Msa0883410 | 0.813972 | 1.952155e-51 | -8.615850e-47 |
Msa0047230 | Msa0883660 | 0.805417 | 1.348631e-49 | -8.615850e-47 |
Msa0047230 | Msa0883700 | 0.812503 | 4.103645e-51 | -8.615850e-47 |
Msa0047230 | Msa0887000 | 0.819633 | 1.048183e-52 | -8.615850e-47 |
Msa0047230 | Msa0911910 | 0.812275 | 4.601956e-51 | -8.615850e-47 |
Msa0047230 | Msa0917630 | 0.809675 | 1.682502e-50 | -8.615850e-47 |
Msa0047230 | Msa0927890 | 0.803103 | 4.089569e-49 | -8.615850e-47 |
Msa0047230 | Msa0967260 | 0.811182 | 7.956334e-51 | -8.615850e-47 |
Msa0047230 | Msa0967900 | 0.806824 | 6.819488e-50 | -8.615850e-47 |
Msa0047230 | Msa0984820 | 0.821673 | 3.563422e-53 | -8.615850e-47 |
Msa0047230 | Msa0984840 | 0.822314 | 2.531350e-53 | -8.615850e-47 |
Msa0047230 | Msa0984850 | 0.805606 | 1.230784e-49 | -8.615850e-47 |
Msa0047230 | Msa0985040 | 0.827382 | 1.613271e-54 | -8.615850e-47 |
Msa0047230 | Msa1008960 | 0.823086 | 1.673491e-53 | -8.615850e-47 |
Msa0047230 | Msa1009170 | 0.817049 | 4.033878e-52 | -8.615850e-47 |
Msa0047230 | Msa1031430 | 0.824336 | 8.532018e-54 | -8.615850e-47 |
Msa0047230 | Msa1031530 | 0.824375 | 8.350340e-54 | -8.615850e-47 |
Msa0047230 | Msa1036360 | 0.825754 | 3.945465e-54 | -8.615850e-47 |
Msa0047230 | Msa1037690 | 0.801152 | 1.030564e-48 | -8.615850e-47 |
Msa0047230 | Msa1038890 | 0.813518 | 2.457642e-51 | -8.615850e-47 |
Msa0047230 | Msa1050320 | 0.803536 | 3.326133e-49 | -8.615850e-47 |
Msa0047230 | Msa1052080 | 0.815580 | 8.597786e-52 | -8.615850e-47 |
Msa0047230 | Msa1070510 | 0.807510 | 4.880067e-50 | -8.615850e-47 |
Msa0047230 | Msa1072640 | 0.800038 | 1.738059e-48 | -8.615850e-47 |
Msa0047230 | Msa1076640 | 0.826776 | 2.253066e-54 | -8.615850e-47 |
Msa0047230 | Msa1101300 | 0.836876 | 7.238282e-57 | -8.615850e-47 |
Msa0047230 | Msa1107950 | 0.813509 | 2.469585e-51 | -8.615850e-47 |
Msa0047230 | Msa1113210 | 0.858274 | 9.219975e-63 | -8.615850e-47 |
Msa0047230 | Msa1113280 | 0.857720 | 1.346511e-62 | -8.615850e-47 |
Msa0047230 | Msa1117830 | 0.832681 | 8.228575e-56 | -8.615850e-47 |
Msa0047230 | Msa1125450 | 0.819959 | 8.832459e-53 | -8.615850e-47 |
Msa0047230 | Msa1128780 | 0.818589 | 1.811277e-52 | -8.615850e-47 |
Msa0047230 | Msa1135130 | 0.801996 | 6.917257e-49 | -8.615850e-47 |
Msa0047230 | Msa1138450 | 0.815353 | 9.658164e-52 | -8.615850e-47 |
Msa0047230 | Msa1138480 | 0.817443 | 3.288564e-52 | -8.615850e-47 |
Msa0047230 | Msa1145930 | 0.801851 | 7.407868e-49 | -8.615850e-47 |
Msa0047230 | Msa1164570 | 0.820655 | 6.116873e-53 | -8.615850e-47 |
Msa0047230 | Msa1166170 | 0.808603 | 2.856066e-50 | -8.615850e-47 |
Msa0047230 | Msa1166270 | 0.809279 | 2.046473e-50 | -8.615850e-47 |
Msa0047230 | Msa1179410 | 0.801133 | 1.039776e-48 | -8.615850e-47 |
Msa0047230 | Msa1182400 | 0.867343 | 1.467476e-65 | -8.615850e-47 |
Msa0047230 | Msa1190980 | 0.808730 | 2.682361e-50 | -8.615850e-47 |
Msa0047230 | Msa1194680 | 0.825598 | 4.296130e-54 | -8.615850e-47 |
Msa0047230 | Msa1199750 | 0.845338 | 4.323509e-59 | -8.615850e-47 |
Msa0047230 | Msa1204390 | 0.829346 | 5.419023e-55 | -8.615850e-47 |
Msa0047230 | Msa1211280 | 0.827248 | 1.737801e-54 | -8.615850e-47 |
Msa0047230 | Msa1216700 | 0.820931 | 5.284308e-53 | -8.615850e-47 |
Msa0047230 | Msa1216900 | 0.804181 | 2.444033e-49 | -8.615850e-47 |
Msa0047230 | Msa1228280 | 0.825887 | 3.667682e-54 | -8.615850e-47 |
Msa0047230 | Msa1228330 | 0.818985 | 1.472477e-52 | -8.615850e-47 |
Msa0047230 | Msa1230190 | 0.857082 | 2.080126e-62 | -8.615850e-47 |
Msa0047230 | Msa1247720 | 0.807294 | 5.423333e-50 | -8.615850e-47 |
Msa0047230 | Msa1272770 | 0.845348 | 4.296082e-59 | -8.615850e-47 |
Msa0047230 | Msa1279310 | 0.815303 | 9.907667e-52 | -8.615850e-47 |
Msa0047230 | Msa1279320 | 0.847249 | 1.302880e-59 | -8.615850e-47 |
Msa0047230 | Msa1286950 | 0.835353 | 1.762957e-56 | -8.615850e-47 |
Msa0047230 | Msa1289990 | 0.834350 | 3.153885e-56 | -8.615850e-47 |
Msa0047230 | Msa1296610 | 0.846762 | 1.771827e-59 | -8.615850e-47 |
Msa0047230 | Msa1304850 | 0.808277 | 3.351558e-50 | -8.615850e-47 |
Msa0047230 | Msa1319230 | 0.842089 | 3.198355e-58 | -8.615850e-47 |
Msa0047230 | Msa1327690 | 0.800416 | 1.456255e-48 | -8.615850e-47 |
Msa0047230 | Msa1328600 | 0.847979 | 8.206091e-60 | -8.615850e-47 |
Msa0047230 | Msa1329020 | 0.827630 | 1.407183e-54 | -8.615850e-47 |
Msa0047230 | Msa1329660 | 0.807141 | 5.842743e-50 | -8.615850e-47 |
Msa0047230 | Msa1329820 | 0.813232 | 2.841325e-51 | -8.615850e-47 |
Msa0047230 | Msa1339310 | 0.856255 | 3.640158e-62 | -8.615850e-47 |
Msa0047230 | Msa1346920 | 0.828455 | 8.906252e-55 | -8.615850e-47 |
Msa0047230 | Msa1357380 | 0.802749 | 4.839063e-49 | -8.615850e-47 |
Msa0047230 | Msa1363560 | 0.845708 | 3.431113e-59 | -8.615850e-47 |
Msa0047230 | Msa1368660 | 0.835870 | 1.304295e-56 | -8.615850e-47 |
Msa0047230 | Msa1373920 | 0.811045 | 8.517606e-51 | -8.615850e-47 |
Msa0047230 | Msa1381720 | 0.802974 | 4.349225e-49 | -8.615850e-47 |
Msa0047230 | Msa1384980 | 0.811671 | 6.230750e-51 | -8.615850e-47 |
Msa0047230 | Msa1386020 | 0.834762 | 2.484851e-56 | -8.615850e-47 |
Msa0047230 | Msa1386250 | 0.814975 | 1.171436e-51 | -8.615850e-47 |
Msa0047230 | Msa1388270 | 0.805508 | 1.290330e-49 | -8.615850e-47 |
Msa0047230 | Msa1391600 | 0.830120 | 3.512265e-55 | -8.615850e-47 |
Msa0047230 | Msa1395700 | 0.822062 | 2.895283e-53 | -8.615850e-47 |
Msa0047230 | Msa1408190 | 0.804313 | 2.294207e-49 | -8.615850e-47 |
Msa0047230 | Msa1410180 | 0.804341 | 2.263584e-49 | -8.615850e-47 |
Msa0047230 | Msa1412830 | 0.834059 | 3.729637e-56 | -8.615850e-47 |
Msa0047230 | Msa1413880 | 0.815156 | 1.067990e-51 | -8.615850e-47 |
Msa0047230 | Msa1431240 | 0.804500 | 2.096600e-49 | -8.615850e-47 |
Msa0047230 | Msa1432250 | 0.857412 | 1.661161e-62 | -8.615850e-47 |
Msa0047230 | Msa1433380 | 0.843377 | 1.454782e-58 | -8.615850e-47 |
Msa0047230 | Msa1438780 | 0.817289 | 3.563038e-52 | -8.615850e-47 |
Msa0047230 | Msa1443440 | 0.836550 | 8.762574e-57 | -8.615850e-47 |
Msa0047230 | Msa1446220 | 0.817937 | 2.545039e-52 | -8.615850e-47 |
Msa0047230 | Msa1448990 | 0.801554 | 8.525497e-49 | -8.615850e-47 |
Msa0047230 | Msa1450850 | 0.852150 | 5.576414e-61 | -8.615850e-47 |
Msa0047230 | Msa1451780 | 0.821385 | 4.152178e-53 | -8.615850e-47 |
Msa0047230 | Msa1457070 | 0.806226 | 9.115579e-50 | -8.615850e-47 |
Msa0047230 | Msa1459170 | 0.807617 | 4.631998e-50 | -8.615850e-47 |
Msa0047230 | Msa1459630 | 0.860751 | 1.660463e-63 | -8.615850e-47 |
Msa0047230 | Msa1460530 | 0.827531 | 1.485720e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0047230 | MtrunA17_Chr8g0347741 | 88.136 | 118 | 12 | 1 | 26 | 143 | 229 | 344 | 6.72e-65 | 203 |
Msa0047230 | MtrunA17_Chr7g0275321 | 68.908 | 119 | 30 | 2 | 30 | 143 | 229 | 345 | 4.81e-45 | 152 |
Msa0047230 | MtrunA17_Chr8g0369161 | 58.904 | 73 | 28 | 1 | 71 | 143 | 301 | 371 | 2.09e-19 | 83.2 |
Msa0047230 | MtrunA17_Chr8g0373571 | 60.526 | 76 | 27 | 2 | 69 | 143 | 251 | 324 | 5.40e-19 | 81.6 |
Msa0047230 | MtrunA17_Chr5g0410531 | 60.274 | 73 | 27 | 1 | 71 | 143 | 302 | 372 | 1.81e-18 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0047230 | AT2G46270.1 | 59.813 | 107 | 33 | 3 | 36 | 142 | 226 | 322 | 2.49e-30 | 112 |
Msa0047230 | AT2G46270.3 | 59.813 | 107 | 33 | 3 | 36 | 142 | 226 | 322 | 2.49e-30 | 112 |
Msa0047230 | AT2G46270.2 | 75.362 | 69 | 15 | 1 | 74 | 142 | 233 | 299 | 3.51e-24 | 96.3 |
Msa0047230 | AT2G46270.4 | 75.362 | 69 | 15 | 1 | 74 | 142 | 233 | 299 | 3.51e-24 | 96.3 |
Msa0047230 | AT4G01120.1 | 51.000 | 100 | 36 | 4 | 43 | 142 | 226 | 312 | 2.37e-20 | 85.9 |
Msa0047230 | AT2G35530.1 | 51.546 | 97 | 34 | 3 | 55 | 143 | 278 | 369 | 8.08e-20 | 84.7 |
Msa0047230 | AT1G32150.1 | 57.333 | 75 | 28 | 2 | 71 | 143 | 287 | 359 | 1.41e-17 | 78.2 |
Msa0047230 | AT4G36730.1 | 54.167 | 72 | 31 | 1 | 72 | 143 | 217 | 286 | 3.49e-15 | 71.2 |
Msa0047230 | AT4G36730.2 | 54.167 | 72 | 31 | 1 | 72 | 143 | 215 | 284 | 4.00e-15 | 70.9 |
Find 111 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGTATCTTCAGGCATATTA+TGG | 0.170895 | 1_1:-79941846 | Msa0047230:intron |
TTTCAAAATCTAATCAATTA+TGG | 0.213890 | 1_1:+79939302 | None:intergenic |
GTTGCCATCGCTTCCATTAC+TGG | 0.238359 | 1_1:+79941198 | None:intergenic |
AAACCCAACGGCATTATTAT+AGG | 0.241535 | 1_1:-79939372 | Msa0047230:three_prime_UTR |
TGCATTGACTGCCGAGAATT+TGG | 0.257432 | 1_1:-79939812 | Msa0047230:CDS |
GTTGGTGTCTCTATGCTTGT+AGG | 0.275884 | 1_1:+79941459 | None:intergenic |
TATGTATGGAGTATCTAATT+TGG | 0.285343 | 1_1:+79942294 | None:intergenic |
GTTGGACCTGTACTTTCTTC+AGG | 0.296175 | 1_1:-79940615 | Msa0047230:CDS |
GAGTCAAAATTATCTATAAT+TGG | 0.311166 | 1_1:+79939496 | None:intergenic |
ACATAAAATTATTTATATCT+TGG | 0.318548 | 1_1:-79939709 | Msa0047230:exon |
TTTATATCTTGGCATTTCAT+AGG | 0.327504 | 1_1:-79939698 | Msa0047230:three_prime_UTR |
CTCATCCTTGTCTACATTCA+TGG | 0.328766 | 1_1:-79942028 | Msa0047230:five_prime_UTR |
AACCCAACGGCATTATTATA+GGG | 0.336990 | 1_1:-79939371 | Msa0047230:three_prime_UTR |
TTTGGAAGCGGCAGTCTCTT+TGG | 0.337449 | 1_1:+79940678 | None:intergenic |
GCAACCAGTGCTGCAGAAAA+TGG | 0.342628 | 1_1:-79940637 | Msa0047230:CDS |
GTTTCAATGGAAAGAGAATA+TGG | 0.347871 | 1_1:+79942079 | None:intergenic |
TATATGTAGGTATGGCAAAA+TGG | 0.356098 | 1_1:-79939140 | Msa0047230:three_prime_UTR |
CGCTTCCATTACTGGAAGTC+TGG | 0.357892 | 1_1:+79941206 | None:intergenic |
CGAGAATTTGGTGCTGAAAT+CGG | 0.374258 | 1_1:-79939800 | Msa0047230:CDS |
TTAGTAATATAGGATAATTC+AGG | 0.376807 | 1_1:-79942270 | Msa0047230:five_prime_UTR |
TGTGGAACACTGGTGGAAAT+AGG | 0.380405 | 1_1:+79940558 | None:intergenic |
CGATTTCAGCACCAAATTCT+CGG | 0.384484 | 1_1:+79939801 | None:intergenic |
ACAGGCTGAGGCTGAAGAAT+TGG | 0.391234 | 1_1:-79939848 | Msa0047230:intron |
GCAGCAGCTGAGTTGAAATA+TGG | 0.399898 | 1_1:+79941801 | None:intergenic |
TCGGCGAGAAACTTGATAGA+TGG | 0.401345 | 1_1:-79939178 | Msa0047230:three_prime_UTR |
ACTGAAACAATGTAGATTGT+AGG | 0.403382 | 1_1:-79939278 | Msa0047230:three_prime_UTR |
CCTATATTACTAATTATGTA+TGG | 0.408840 | 1_1:+79942280 | None:intergenic |
CTGAAACAATGTAGATTGTA+GGG | 0.415907 | 1_1:-79939277 | Msa0047230:three_prime_UTR |
ATCATCTGGAAACACTGATC+AGG | 0.417420 | 1_1:-79941433 | Msa0047230:five_prime_UTR |
AACATTCAACCACAAAGGTT+TGG | 0.421468 | 1_1:+79941644 | None:intergenic |
GCCTCCTGAAGCTTGGATGC+AGG | 0.426706 | 1_1:-79940520 | Msa0047230:intron |
AGGGCTACAGAGGAAGAAAA+TGG | 0.427836 | 1_1:-79939408 | Msa0047230:three_prime_UTR |
CCATACATAATTAGTAATAT+AGG | 0.429988 | 1_1:-79942280 | Msa0047230:five_prime_UTR |
GAAGCTGGAAAACACTCAAT+TGG | 0.435156 | 1_1:-79939469 | Msa0047230:three_prime_UTR |
TACATATGAATATGTTATAC+TGG | 0.444536 | 1_1:-79941723 | Msa0047230:five_prime_UTR |
GAGACACCAACTAAATCATC+TGG | 0.445527 | 1_1:-79941447 | Msa0047230:five_prime_UTR |
CTTAATGTACCAAACCTTTG+TGG | 0.446577 | 1_1:-79941653 | Msa0047230:five_prime_UTR |
TTCAACTCAGCTGCTGCTCC+TGG | 0.457412 | 1_1:-79941795 | Msa0047230:five_prime_UTR |
GCAGCGACGCGTCATATTGA+AGG | 0.458703 | 1_1:+79939544 | None:intergenic |
TGTATCTTCAGGCATATTAT+GGG | 0.464465 | 1_1:-79941845 | Msa0047230:intron |
GAAATCGGAAATGAATGAAT+TGG | 0.472002 | 1_1:-79939785 | Msa0047230:CDS |
TTCAGGTATGACCACATCAC+TGG | 0.473232 | 1_1:-79940598 | Msa0047230:CDS |
GAAGATCCAGGCTTAGGCTT+AGG | 0.474677 | 1_1:-79940305 | Msa0047230:CDS |
AAACTTACAGCAGGTGAAGA+TGG | 0.476285 | 1_1:+79941587 | None:intergenic |
GTACTTATGAATTATATTCA+AGG | 0.477420 | 1_1:-79941614 | Msa0047230:five_prime_UTR |
GTGGAGTATTCTTTATCGAT+TGG | 0.481011 | 1_1:+79942104 | None:intergenic |
AGTACCTGCATCCAAGCTTC+AGG | 0.494330 | 1_1:+79940516 | None:intergenic |
ACCAGTGTTCCACAGCCTTG+TGG | 0.495543 | 1_1:-79940549 | Msa0047230:CDS |
GGAAGCGATGGCAACACTAC+AGG | 0.500726 | 1_1:-79941190 | Msa0047230:five_prime_UTR |
GAAGGTGTAGGTCGTTTCAA+TGG | 0.503975 | 1_1:+79942066 | None:intergenic |
GTGTTTCCAGATGATTTAGT+TGG | 0.505094 | 1_1:+79941441 | None:intergenic |
AACCCTATAATAATGCCGTT+GGG | 0.507995 | 1_1:+79939369 | None:intergenic |
AAAGAAATTCACTTATATGT+AGG | 0.508083 | 1_1:-79939153 | Msa0047230:three_prime_UTR |
CAAAGCATGGACACAGACAC+TGG | 0.509651 | 1_1:-79939672 | Msa0047230:three_prime_UTR |
CTGCTAGAAGATCCAGGCTT+AGG | 0.520262 | 1_1:-79940311 | Msa0047230:CDS |
CGGCGAGAAACTTGATAGAT+GGG | 0.526999 | 1_1:-79939177 | Msa0047230:three_prime_UTR |
TAACCCTATAATAATGCCGT+TGG | 0.527045 | 1_1:+79939368 | None:intergenic |
AATTCACTTATATGTAGGTA+TGG | 0.527085 | 1_1:-79939148 | Msa0047230:three_prime_UTR |
ATGGAAAGAGAATATGGTTG+TGG | 0.527159 | 1_1:+79942085 | None:intergenic |
CTATTTAGTCAAATTATCAC+CGG | 0.529024 | 1_1:+79939627 | None:intergenic |
GCTAGCGTGGAGAGGAAAAC+CGG | 0.540495 | 1_1:-79941383 | Msa0047230:five_prime_UTR |
GGCAAAACTCCACAAGGCTG+TGG | 0.541143 | 1_1:+79940540 | None:intergenic |
TTGCTTCCTAAGCCTAAGCC+TGG | 0.544129 | 1_1:+79940299 | None:intergenic |
TGAAACAATGTAGATTGTAG+GGG | 0.546493 | 1_1:-79939276 | Msa0047230:three_prime_UTR |
TCATCTGGAAACACTGATCA+GGG | 0.547332 | 1_1:-79941432 | Msa0047230:five_prime_UTR |
AAAATCTAATCAATTATGGA+TGG | 0.550791 | 1_1:+79939306 | None:intergenic |
GTGAATCTGCTAGAAGATCC+AGG | 0.554001 | 1_1:-79940317 | Msa0047230:CDS |
TCCACAAGGCTGTGGAACAC+TGG | 0.554932 | 1_1:+79940548 | None:intergenic |
GAGCTTATAGATGAGATTGA+AGG | 0.560073 | 1_1:+79942048 | None:intergenic |
TTGAAAGTGCTGAGCTAGCG+TGG | 0.561226 | 1_1:-79941396 | Msa0047230:five_prime_UTR |
CCAGTGCTGCAGAAAATGGT+TGG | 0.563429 | 1_1:-79940633 | Msa0047230:CDS |
GAAGCGATGGCAACACTACA+GGG | 0.570248 | 1_1:-79941189 | Msa0047230:five_prime_UTR |
TATGTACACAGAAATATCAA+TGG | 0.574563 | 1_1:+79941740 | None:intergenic |
ATTTCATAGGCTACAAAGCA+TGG | 0.577216 | 1_1:-79939685 | Msa0047230:three_prime_UTR |
GTGAGCTGAAACGTGAGAGG+AGG | 0.579172 | 1_1:-79940353 | Msa0047230:CDS |
TTACTTGAACAGATGGAGAA+GGG | 0.588445 | 1_1:-79940729 | Msa0047230:intron |
ATTACTTGAACAGATGGAGA+AGG | 0.590419 | 1_1:-79940730 | Msa0047230:intron |
TGACCACATCACTGGAACTG+AGG | 0.592621 | 1_1:-79940590 | Msa0047230:CDS |
ACAAGGCTGTGGAACACTGG+TGG | 0.593279 | 1_1:+79940551 | None:intergenic |
TGTGAACGGCATTGACAAGA+GGG | 0.593449 | 1_1:-79939427 | Msa0047230:three_prime_UTR |
ACTTCCAGTAATGGAAGCGA+TGG | 0.593651 | 1_1:-79941202 | Msa0047230:five_prime_UTR |
TACAAATGTCAATGCCGTGC+TGG | 0.596419 | 1_1:-79939588 | Msa0047230:three_prime_UTR |
GTTCCTCAGTTCCAGTGATG+TGG | 0.596954 | 1_1:+79940587 | None:intergenic |
GAACAAACCTCAGTGATAGC+CGG | 0.601771 | 1_1:+79941364 | None:intergenic |
TAAAAGCTACTTCAAAACAA+AGG | 0.604078 | 1_1:+79941975 | None:intergenic |
GGGCTCCAGACTTCCAGTAA+TGG | 0.604188 | 1_1:-79941211 | Msa0047230:five_prime_UTR |
ACACTGGTGGAAATAGGCGA+AGG | 0.605436 | 1_1:+79940564 | None:intergenic |
CGACATTGACACATCATCAC+CGG | 0.607876 | 1_1:-79939646 | Msa0047230:three_prime_UTR |
TATCAACAGTGTGGATACTG+AGG | 0.615133 | 1_1:-79941232 | Msa0047230:intron |
ATAGATGAGATTGAAGGTGT+AGG | 0.618296 | 1_1:+79942054 | None:intergenic |
GTCATACCTGAAGAAAGTAC+AGG | 0.620947 | 1_1:+79940609 | None:intergenic |
TATGAACATCACAGATGACC+AGG | 0.623111 | 1_1:+79941777 | None:intergenic |
AGAGTGAGCTGAAACGTGAG+AGG | 0.623183 | 1_1:-79940356 | Msa0047230:CDS |
TTGTGAACGGCATTGACAAG+AGG | 0.625018 | 1_1:-79939428 | Msa0047230:three_prime_UTR |
AGTGCTGAGCTAGCGTGGAG+AGG | 0.630683 | 1_1:-79941391 | Msa0047230:five_prime_UTR |
CATTGACAAGAGGGCTACAG+AGG | 0.633228 | 1_1:-79939418 | Msa0047230:three_prime_UTR |
ACCTGCATCCAAGCTTCAGG+AGG | 0.636392 | 1_1:+79940519 | None:intergenic |
AAAGCATGGACACAGACACT+GGG | 0.645560 | 1_1:-79939671 | Msa0047230:three_prime_UTR |
ATATAAACATTCAACCACAA+AGG | 0.654190 | 1_1:+79941639 | None:intergenic |
GCTGAGTTGAAATATGGTGG+TGG | 0.656136 | 1_1:+79941807 | None:intergenic |
TTCTGTGAGAACAAACCCAA+CGG | 0.657855 | 1_1:-79939384 | Msa0047230:three_prime_UTR |
TCAGGAGGCAAAACTCCACA+AGG | 0.658647 | 1_1:+79940534 | None:intergenic |
ATCAACAGTGTGGATACTGA+GGG | 0.658895 | 1_1:-79941231 | Msa0047230:intron |
ACAGAAGAGATAATTGTGAA+CGG | 0.661430 | 1_1:-79939441 | Msa0047230:three_prime_UTR |
CACTGGTGGAAATAGGCGAA+GGG | 0.662789 | 1_1:+79940565 | None:intergenic |
GAAACAATGTAGATTGTAGG+GGG | 0.675591 | 1_1:-79939275 | Msa0047230:three_prime_UTR |
TCATGTGTCTGACACCAGCA+CGG | 0.677223 | 1_1:+79939574 | None:intergenic |
GCAGCTGAGTTGAAATATGG+TGG | 0.711269 | 1_1:+79941804 | None:intergenic |
TTGGTCCATGAATGTAGACA+AGG | 0.721265 | 1_1:+79942023 | None:intergenic |
AGGAAAACCGGCTATCACTG+AGG | 0.727206 | 1_1:-79941371 | Msa0047230:intron |
AAGCGATGGCAACACTACAG+GGG | 0.742066 | 1_1:-79941188 | Msa0047230:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAATTACATTCAATTTTTT+TGG | - | chr1_1:79940615-79940634 | Msa0047230:CDS | 10.0% |
!! | ACATAAAATTATTTATATCT+TGG | - | chr1_1:79941725-79941744 | Msa0047230:five_prime_UTR | 10.0% |
!! | TTATAAATAAAGTACATAAC+CGG | + | chr1_1:79940302-79940321 | None:intergenic | 15.0% |
!! | TTTCAAAATCTAATCAATTA+TGG | + | chr1_1:79942135-79942154 | None:intergenic | 15.0% |
!!! | TTTTAAAATTGTAATATCGT+AGG | + | chr1_1:79942198-79942217 | None:intergenic | 15.0% |
!!! | TTTAGAATCTAAAAATTGAT+CGG | - | chr1_1:79942237-79942256 | Msa0047230:five_prime_UTR | 15.0% |
!! | CCTATATTACTAATTATGTA+TGG | + | chr1_1:79939157-79939176 | None:intergenic | 20.0% |
!! | CCATACATAATTAGTAATAT+AGG | - | chr1_1:79939154-79939173 | Msa0047230:three_prime_UTR | 20.0% |
!! | TTAGTAATATAGGATAATTC+AGG | - | chr1_1:79939164-79939183 | Msa0047230:three_prime_UTR | 20.0% |
!!! | AATGTGTTTTCTTACAAAAA+AGG | - | chr1_1:79939304-79939323 | Msa0047230:three_prime_UTR | 20.0% |
!!! | AAGCAAAAGTAGTTTTTAAT+GGG | + | chr1_1:79939549-79939568 | None:intergenic | 20.0% |
!!! | AAAGCAAAAGTAGTTTTTAA+TGG | + | chr1_1:79939550-79939569 | None:intergenic | 20.0% |
!! | TACATATGAATATGTTATAC+TGG | - | chr1_1:79939711-79939730 | Msa0047230:exon | 20.0% |
!! | GTACTTATGAATTATATTCA+AGG | - | chr1_1:79939820-79939839 | Msa0047230:CDS | 20.0% |
!! | TATAAATAAAGTACATAACC+GGG | + | chr1_1:79940301-79940320 | None:intergenic | 20.0% |
!!! | ATTTTCATGCTTCAATTTTT+CGG | + | chr1_1:79940329-79940348 | None:intergenic | 20.0% |
!! | ATAAACAATACTAGTTATTC+TGG | - | chr1_1:79940400-79940419 | Msa0047230:intron | 20.0% |
!! | TAATCAGAAATTTAAAAGCA+TGG | + | chr1_1:79940553-79940572 | None:intergenic | 20.0% |
!!! | TCAATTTTTTTGGTTTCATA+AGG | - | chr1_1:79940625-79940644 | Msa0047230:CDS | 20.0% |
!! | TGAAAACAACTTATAGAATA+TGG | - | chr1_1:79941371-79941390 | Msa0047230:intron | 20.0% |
!! | AAAGAAAATGTTATCACAAA+AGG | - | chr1_1:79941530-79941549 | Msa0047230:intron | 20.0% |
!! | GAGTCAAAATTATCTATAAT+TGG | + | chr1_1:79941941-79941960 | None:intergenic | 20.0% |
!!! | ATTATAGATAATTTTGACTC+AGG | - | chr1_1:79941941-79941960 | Msa0047230:intron | 20.0% |
!! | AAAATCTAATCAATTATGGA+TGG | + | chr1_1:79942131-79942150 | None:intergenic | 20.0% |
!!! | TTAAAAACCCTTCATTTTTT+CGG | - | chr1_1:79942212-79942231 | Msa0047230:five_prime_UTR | 20.0% |
!! | AAAGAAATTCACTTATATGT+AGG | - | chr1_1:79942281-79942300 | Msa0047230:five_prime_UTR | 20.0% |
!! | TATGTATGGAGTATCTAATT+TGG | + | chr1_1:79939143-79939162 | None:intergenic | 25.0% |
!!! | CATTGTTTTTGATATTGTGT+TGG | + | chr1_1:79939433-79939452 | None:intergenic | 25.0% |
! | TAAAAGCTACTTCAAAACAA+AGG | + | chr1_1:79939462-79939481 | None:intergenic | 25.0% |
! | TATGTACACAGAAATATCAA+TGG | + | chr1_1:79939697-79939716 | None:intergenic | 25.0% |
! | ATATAAACATTCAACCACAA+AGG | + | chr1_1:79939798-79939817 | None:intergenic | 25.0% |
! | AAAAAATCAAAACTTACAGC+AGG | + | chr1_1:79939859-79939878 | None:intergenic | 25.0% |
! | ATCATAATTTACGGTATTCA+GGG | + | chr1_1:79939919-79939938 | None:intergenic | 25.0% |
! | GTCAAATCCATCATAATTTA+CGG | + | chr1_1:79939928-79939947 | None:intergenic | 25.0% |
!!! | TGGCTATTATAATTTTTTCC+CGG | - | chr1_1:79940280-79940299 | Msa0047230:intron | 25.0% |
!! | TTTTCATGCTTCAATTTTTC+GGG | + | chr1_1:79940328-79940347 | None:intergenic | 25.0% |
!!! | TTATTTGTCACGTGTTTTTA+TGG | - | chr1_1:79941208-79941227 | Msa0047230:five_prime_UTR | 25.0% |
!!! | TATTTGTCACGTGTTTTTAT+GGG | - | chr1_1:79941209-79941228 | Msa0047230:five_prime_UTR | 25.0% |
!! | TTAAGTTGTTTATCCAAACA+CGG | - | chr1_1:79941480-79941499 | Msa0047230:intron | 25.0% |
!! | GTGATAACATTTTCTTTCAA+GGG | + | chr1_1:79941527-79941546 | None:intergenic | 25.0% |
!! | TGTGATAACATTTTCTTTCA+AGG | + | chr1_1:79941528-79941547 | None:intergenic | 25.0% |
! | TTTATATCTTGGCATTTCAT+AGG | - | chr1_1:79941736-79941755 | Msa0047230:five_prime_UTR | 25.0% |
! | CTATTTAGTCAAATTATCAC+CGG | + | chr1_1:79941810-79941829 | None:intergenic | 25.0% |
! | CTAAAATCCGAAAAAATGAA+GGG | + | chr1_1:79942222-79942241 | None:intergenic | 25.0% |
!! | TCTAAAATCCGAAAAAATGA+AGG | + | chr1_1:79942223-79942242 | None:intergenic | 25.0% |
! | AATTCACTTATATGTAGGTA+TGG | - | chr1_1:79942286-79942305 | Msa0047230:five_prime_UTR | 25.0% |
GTTTCAATGGAAAGAGAATA+TGG | + | chr1_1:79939358-79939377 | None:intergenic | 30.0% | |
ATGTATCTTCAGGCATATTA+TGG | - | chr1_1:79939588-79939607 | Msa0047230:three_prime_UTR | 30.0% | |
TGTATCTTCAGGCATATTAT+GGG | - | chr1_1:79939589-79939608 | Msa0047230:three_prime_UTR | 30.0% | |
TCATAATTTACGGTATTCAG+GGG | + | chr1_1:79939918-79939937 | None:intergenic | 30.0% | |
CATCATAATTTACGGTATTC+AGG | + | chr1_1:79939920-79939939 | None:intergenic | 30.0% | |
CTGAATACCGTAAATTATGA+TGG | - | chr1_1:79939918-79939937 | Msa0047230:intron | 30.0% | |
!! | AAATTATGATGGATTTGACC+TGG | - | chr1_1:79939929-79939948 | Msa0047230:intron | 30.0% |
!! | AATTATGATGGATTTGACCT+GGG | - | chr1_1:79939930-79939949 | Msa0047230:intron | 30.0% |
GATATATCATATCAACAGTG+TGG | - | chr1_1:79940193-79940212 | Msa0047230:intron | 30.0% | |
! | CATTGGTCTGTTTATAACAT+TGG | + | chr1_1:79940357-79940376 | None:intergenic | 30.0% |
CAATGTTATAAACAGACCAA+TGG | - | chr1_1:79940355-79940374 | Msa0047230:CDS | 30.0% | |
AGTATTGTTTATCATACCAG+TGG | + | chr1_1:79940392-79940411 | None:intergenic | 30.0% | |
CTGGATTACAAATATACTTC+TGG | - | chr1_1:79940419-79940438 | Msa0047230:intron | 30.0% | |
CCTTATCATGCATTAACAAT+TGG | + | chr1_1:79940522-79940541 | None:intergenic | 30.0% | |
CCAATTGTTAATGCATGATA+AGG | - | chr1_1:79940519-79940538 | Msa0047230:intron | 30.0% | |
ATGTAATTAACTCTCAAACG+AGG | + | chr1_1:79940605-79940624 | None:intergenic | 30.0% | |
GTACTAATTACTTGAACAGA+TGG | - | chr1_1:79940698-79940717 | Msa0047230:CDS | 30.0% | |
TTTAGTGTCAGTAAAAGACA+AGG | + | chr1_1:79941029-79941048 | None:intergenic | 30.0% | |
ACTGACACTAAAGTAATTCT+TGG | - | chr1_1:79941037-79941056 | Msa0047230:intron | 30.0% | |
!! | TTTTATGGGTTTGTTTGGAT+TGG | - | chr1_1:79941223-79941242 | Msa0047230:five_prime_UTR | 30.0% |
TAAACACATATGAGACTGTT+CGG | - | chr1_1:79941270-79941289 | Msa0047230:intron | 30.0% | |
AATAAGCTGAAAAGAGCTTA+TGG | + | chr1_1:79941326-79941345 | None:intergenic | 30.0% | |
GAAATCGGAAATGAATGAAT+TGG | - | chr1_1:79941649-79941668 | Msa0047230:five_prime_UTR | 30.0% | |
ACAGAAGAGATAATTGTGAA+CGG | - | chr1_1:79941993-79942012 | Msa0047230:five_prime_UTR | 30.0% | |
ACTGAAACAATGTAGATTGT+AGG | - | chr1_1:79942156-79942175 | Msa0047230:five_prime_UTR | 30.0% | |
CTGAAACAATGTAGATTGTA+GGG | - | chr1_1:79942157-79942176 | Msa0047230:five_prime_UTR | 30.0% | |
TGAAACAATGTAGATTGTAG+GGG | - | chr1_1:79942158-79942177 | Msa0047230:five_prime_UTR | 30.0% | |
TATATGTAGGTATGGCAAAA+TGG | - | chr1_1:79942294-79942313 | Msa0047230:five_prime_UTR | 30.0% | |
! | GTGGAGTATTCTTTATCGAT+TGG | + | chr1_1:79939333-79939352 | None:intergenic | 35.0% |
ATGGAAAGAGAATATGGTTG+TGG | + | chr1_1:79939352-79939371 | None:intergenic | 35.0% | |
! | ATAGATGAGATTGAAGGTGT+AGG | + | chr1_1:79939383-79939402 | None:intergenic | 35.0% |
GAGCTTATAGATGAGATTGA+AGG | + | chr1_1:79939389-79939408 | None:intergenic | 35.0% | |
TGTCTGTTGTATGTATCTTC+AGG | - | chr1_1:79939578-79939597 | Msa0047230:three_prime_UTR | 35.0% | |
CTTAATGTACCAAACCTTTG+TGG | - | chr1_1:79939781-79939800 | Msa0047230:CDS | 35.0% | |
AACATTCAACCACAAAGGTT+TGG | + | chr1_1:79939793-79939812 | None:intergenic | 35.0% | |
!! | ATTATGATGGATTTGACCTG+GGG | - | chr1_1:79939931-79939950 | Msa0047230:intron | 35.0% |
GTGTTTCCAGATGATTTAGT+TGG | + | chr1_1:79939996-79940015 | None:intergenic | 35.0% | |
TTTATCATACCAGTGGTTGT+TGG | + | chr1_1:79940385-79940404 | None:intergenic | 35.0% | |
TCAATGAATTGTTGACACCA+CGG | + | chr1_1:79940473-79940492 | None:intergenic | 35.0% | |
GAATCATTTGATACCAAGAC+TGG | - | chr1_1:79940577-79940596 | Msa0047230:CDS | 35.0% | |
ATTACTTGAACAGATGGAGA+AGG | - | chr1_1:79940704-79940723 | Msa0047230:CDS | 35.0% | |
TTACTTGAACAGATGGAGAA+GGG | - | chr1_1:79940705-79940724 | Msa0047230:CDS | 35.0% | |
!! | CGTGTTTTTATGGGTTTGTT+TGG | - | chr1_1:79941218-79941237 | Msa0047230:five_prime_UTR | 35.0% |
CTTATTTCCATAAGCTCTTC+AGG | - | chr1_1:79941340-79941359 | Msa0047230:intron | 35.0% | |
AAACTATCCTGAAGAGCTTA+TGG | + | chr1_1:79941350-79941369 | None:intergenic | 35.0% | |
ATTTCATAGGCTACAAAGCA+TGG | - | chr1_1:79941749-79941768 | Msa0047230:five_prime_UTR | 35.0% | |
AAACCCAACGGCATTATTAT+AGG | - | chr1_1:79942062-79942081 | Msa0047230:five_prime_UTR | 35.0% | |
AACCCAACGGCATTATTATA+GGG | - | chr1_1:79942063-79942082 | Msa0047230:five_prime_UTR | 35.0% | |
AACCCTATAATAATGCCGTT+GGG | + | chr1_1:79942068-79942087 | None:intergenic | 35.0% | |
TAACCCTATAATAATGCCGT+TGG | + | chr1_1:79942069-79942088 | None:intergenic | 35.0% | |
GAAACAATGTAGATTGTAGG+GGG | - | chr1_1:79942159-79942178 | Msa0047230:five_prime_UTR | 35.0% | |
CTCATCCTTGTCTACATTCA+TGG | - | chr1_1:79939406-79939425 | Msa0047230:three_prime_UTR | 40.0% | |
TTGGTCCATGAATGTAGACA+AGG | + | chr1_1:79939414-79939433 | None:intergenic | 40.0% | |
!!! | CCAAGCTTTTTTACGTACAG+AGG | + | chr1_1:79939486-79939505 | None:intergenic | 40.0% |
CCTCTGTACGTAAAAAAGCT+TGG | - | chr1_1:79939483-79939502 | Msa0047230:three_prime_UTR | 40.0% | |
CGTAAAAAAGCTTGGCCAAT+CGG | - | chr1_1:79939491-79939510 | Msa0047230:three_prime_UTR | 40.0% | |
TATGAACATCACAGATGACC+AGG | + | chr1_1:79939660-79939679 | None:intergenic | 40.0% | |
AAACTTACAGCAGGTGAAGA+TGG | + | chr1_1:79939850-79939869 | None:intergenic | 40.0% | |
!! | TTATGATGGATTTGACCTGG+GGG | - | chr1_1:79939932-79939951 | Msa0047230:intron | 40.0% |
GAGACACCAACTAAATCATC+TGG | - | chr1_1:79939987-79940006 | Msa0047230:intron | 40.0% | |
ATCATCTGGAAACACTGATC+AGG | - | chr1_1:79940001-79940020 | Msa0047230:intron | 40.0% | |
TCATCTGGAAACACTGATCA+GGG | - | chr1_1:79940002-79940021 | Msa0047230:intron | 40.0% | |
! | ATAGGAAGTGCAGTTGATTC+TGG | + | chr1_1:79940109-79940128 | None:intergenic | 40.0% |
!! | TACGAGTTTGTTGCTCTGTT+AGG | - | chr1_1:79940140-79940159 | Msa0047230:intron | 40.0% |
TATCAACAGTGTGGATACTG+AGG | - | chr1_1:79940202-79940221 | Msa0047230:intron | 40.0% | |
ATCAACAGTGTGGATACTGA+GGG | - | chr1_1:79940203-79940222 | Msa0047230:intron | 40.0% | |
! | GATAACTGACACCGTCTTTT+TGG | + | chr1_1:79940777-79940796 | None:intergenic | 40.0% |
! | GTCATACCTGAAGAAAGTAC+AGG | + | chr1_1:79940828-79940847 | None:intergenic | 40.0% |
TTCAGCTCACTCTCATTCTA+AGG | + | chr1_1:79941071-79941090 | None:intergenic | 40.0% | |
CGTTCTTATCTCCTCTATAC+AGG | - | chr1_1:79941568-79941587 | Msa0047230:intron | 40.0% | |
CGATTTCAGCACCAAATTCT+CGG | + | chr1_1:79941636-79941655 | None:intergenic | 40.0% | |
!! | CGAGAATTTGGTGCTGAAAT+CGG | - | chr1_1:79941634-79941653 | Msa0047230:five_prime_UTR | 40.0% |
!!! | AATTTTGACTCAGGAGAAGC+TGG | - | chr1_1:79941950-79941969 | Msa0047230:intron | 40.0% |
GAAGCTGGAAAACACTCAAT+TGG | - | chr1_1:79941965-79941984 | Msa0047230:intron | 40.0% | |
TTCTGTGAGAACAAACCCAA+CGG | - | chr1_1:79942050-79942069 | Msa0047230:five_prime_UTR | 40.0% | |
! | GAAGGTGTAGGTCGTTTCAA+TGG | + | chr1_1:79939371-79939390 | None:intergenic | 45.0% |
GAAAGCAATCTGTGACCGAT+TGG | + | chr1_1:79939509-79939528 | None:intergenic | 45.0% | |
! | GCTGAGTTGAAATATGGTGG+TGG | + | chr1_1:79939630-79939649 | None:intergenic | 45.0% |
! | GCAGCTGAGTTGAAATATGG+TGG | + | chr1_1:79939633-79939652 | None:intergenic | 45.0% |
! | GCAGCAGCTGAGTTGAAATA+TGG | + | chr1_1:79939636-79939655 | None:intergenic | 45.0% |
CAGGGGATGATGTAAAGCTT+CGG | + | chr1_1:79939901-79939920 | None:intergenic | 45.0% | |
! | GTTGGTGTCTCTATGCTTGT+AGG | + | chr1_1:79939978-79939997 | None:intergenic | 45.0% |
GAACAAACCTCAGTGATAGC+CGG | + | chr1_1:79940073-79940092 | None:intergenic | 45.0% | |
ACTCGTAGAGCAAGGAAGAT+AGG | + | chr1_1:79940127-79940146 | None:intergenic | 45.0% | |
AGCAACAAACTCGTAGAGCA+AGG | + | chr1_1:79940135-79940154 | None:intergenic | 45.0% | |
! | ACTTCCAGTAATGGAAGCGA+TGG | - | chr1_1:79940232-79940251 | Msa0047230:intron | 45.0% |
CTACAGGGGTGAGAAATTTC+TGG | - | chr1_1:79940260-79940279 | Msa0047230:intron | 45.0% | |
! | AGTGGTTGTTGGTGTTCCAT+TGG | + | chr1_1:79940374-79940393 | None:intergenic | 45.0% |
AATGGAACACCAACAACCAC+TGG | - | chr1_1:79940373-79940392 | Msa0047230:intron | 45.0% | |
GTCATGAATGACTGTAACCG+TGG | - | chr1_1:79940453-79940472 | Msa0047230:intron | 45.0% | |
!! | TGACACCGTCTTTTTGGAAG+CGG | + | chr1_1:79940771-79940790 | None:intergenic | 45.0% |
GTTGGACCTGTACTTTCTTC+AGG | - | chr1_1:79940819-79940838 | Msa0047230:intron | 45.0% | |
TTCAGGTATGACCACATCAC+TGG | - | chr1_1:79940836-79940855 | Msa0047230:intron | 45.0% | |
TGTGGAACACTGGTGGAAAT+AGG | + | chr1_1:79940879-79940898 | None:intergenic | 45.0% | |
GTGAATCTGCTAGAAGATCC+AGG | - | chr1_1:79941117-79941136 | Msa0047230:intron | 45.0% | |
GAGCATATAGAACCAGCGTA+TGG | - | chr1_1:79941295-79941314 | Msa0047230:intron | 45.0% | |
TATAGAACCAGCGTATGGCA+TGG | - | chr1_1:79941300-79941319 | Msa0047230:intron | 45.0% | |
GGCTACATGTACATGCATCA+GGG | + | chr1_1:79941506-79941525 | None:intergenic | 45.0% | |
TATCTCCTCTATACAGGCTG+AGG | - | chr1_1:79941574-79941593 | Msa0047230:intron | 45.0% | |
!! | TGCATTGACTGCCGAGAATT+TGG | - | chr1_1:79941622-79941641 | Msa0047230:five_prime_UTR | 45.0% |
AAAGCATGGACACAGACACT+GGG | - | chr1_1:79941763-79941782 | Msa0047230:five_prime_UTR | 45.0% | |
CGACATTGACACATCATCAC+CGG | - | chr1_1:79941788-79941807 | Msa0047230:five_prime_UTR | 45.0% | |
TACAAATGTCAATGCCGTGC+TGG | - | chr1_1:79941846-79941865 | Msa0047230:intron | 45.0% | |
!! | TTGTGAACGGCATTGACAAG+AGG | - | chr1_1:79942006-79942025 | Msa0047230:five_prime_UTR | 45.0% |
!! | TGTGAACGGCATTGACAAGA+GGG | - | chr1_1:79942007-79942026 | Msa0047230:five_prime_UTR | 45.0% |
AGGGCTACAGAGGAAGAAAA+TGG | - | chr1_1:79942026-79942045 | Msa0047230:five_prime_UTR | 45.0% | |
AGATTGTAGGGGGTCTCTAA+TGG | - | chr1_1:79942169-79942188 | Msa0047230:five_prime_UTR | 45.0% | |
TCGGCGAGAAACTTGATAGA+TGG | - | chr1_1:79942256-79942275 | Msa0047230:five_prime_UTR | 45.0% | |
CGGCGAGAAACTTGATAGAT+GGG | - | chr1_1:79942257-79942276 | Msa0047230:five_prime_UTR | 45.0% | |
!! | TTGAAAGTGCTGAGCTAGCG+TGG | - | chr1_1:79940038-79940057 | Msa0047230:intron | 50.0% |
AGGAAAACCGGCTATCACTG+AGG | - | chr1_1:79940063-79940082 | Msa0047230:intron | 50.0% | |
GTTGCTCTGTTAGGTTCGTG+TGG | - | chr1_1:79940149-79940168 | Msa0047230:intron | 50.0% | |
CGCTTCCATTACTGGAAGTC+TGG | + | chr1_1:79940231-79940250 | None:intergenic | 50.0% | |
GTTGCCATCGCTTCCATTAC+TGG | + | chr1_1:79940239-79940258 | None:intergenic | 50.0% | |
GAAGCGATGGCAACACTACA+GGG | - | chr1_1:79940245-79940264 | Msa0047230:intron | 50.0% | |
AAGCGATGGCAACACTACAG+GGG | - | chr1_1:79940246-79940265 | Msa0047230:intron | 50.0% | |
TTTGGAAGCGGCAGTCTCTT+TGG | + | chr1_1:79940759-79940778 | None:intergenic | 50.0% | |
! | GACTGCCGCTTCCAAAAAGA+CGG | - | chr1_1:79940763-79940782 | Msa0047230:intron | 50.0% |
GCAACCAGTGCTGCAGAAAA+TGG | - | chr1_1:79940797-79940816 | Msa0047230:intron | 50.0% | |
! | CCAACCATTTTCTGCAGCAC+TGG | + | chr1_1:79940804-79940823 | None:intergenic | 50.0% |
CCAGTGCTGCAGAAAATGGT+TGG | - | chr1_1:79940801-79940820 | Msa0047230:intron | 50.0% | |
TGACCACATCACTGGAACTG+AGG | - | chr1_1:79940844-79940863 | Msa0047230:intron | 50.0% | |
GTTCCTCAGTTCCAGTGATG+TGG | + | chr1_1:79940850-79940869 | None:intergenic | 50.0% | |
CACTGGTGGAAATAGGCGAA+GGG | + | chr1_1:79940872-79940891 | None:intergenic | 50.0% | |
ACACTGGTGGAAATAGGCGA+AGG | + | chr1_1:79940873-79940892 | None:intergenic | 50.0% | |
TCAGGAGGCAAAACTCCACA+AGG | + | chr1_1:79940903-79940922 | None:intergenic | 50.0% | |
! | GAGTTTTGCCTCCTGAAGCT+TGG | - | chr1_1:79940907-79940926 | Msa0047230:intron | 50.0% |
AGTACCTGCATCCAAGCTTC+AGG | + | chr1_1:79940921-79940940 | None:intergenic | 50.0% | |
AGAGTGAGCTGAAACGTGAG+AGG | - | chr1_1:79941078-79941097 | Msa0047230:intron | 50.0% | |
CTGCTAGAAGATCCAGGCTT+AGG | - | chr1_1:79941123-79941142 | Msa0047230:intron | 50.0% | |
GAAGATCCAGGCTTAGGCTT+AGG | - | chr1_1:79941129-79941148 | Msa0047230:intron | 50.0% | |
TTGCTTCCTAAGCCTAAGCC+TGG | + | chr1_1:79941138-79941157 | None:intergenic | 50.0% | |
GGGCTACATGTACATGCATC+AGG | + | chr1_1:79941507-79941526 | None:intergenic | 50.0% | |
TTCAGCCTCAGCCTGTATAG+AGG | + | chr1_1:79941582-79941601 | None:intergenic | 50.0% | |
ACAGGCTGAGGCTGAAGAAT+TGG | - | chr1_1:79941586-79941605 | Msa0047230:intron | 50.0% | |
CAAAGCATGGACACAGACAC+TGG | - | chr1_1:79941762-79941781 | Msa0047230:five_prime_UTR | 50.0% | |
TCATGTGTCTGACACCAGCA+CGG | + | chr1_1:79941863-79941882 | None:intergenic | 50.0% | |
CATTGACAAGAGGGCTACAG+AGG | - | chr1_1:79942016-79942035 | Msa0047230:five_prime_UTR | 50.0% | |
TTCAACTCAGCTGCTGCTCC+TGG | - | chr1_1:79939639-79939658 | Msa0047230:three_prime_UTR | 55.0% | |
GCTAGCGTGGAGAGGAAAAC+CGG | - | chr1_1:79940051-79940070 | Msa0047230:intron | 55.0% | |
GGGCTCCAGACTTCCAGTAA+TGG | - | chr1_1:79940223-79940242 | Msa0047230:intron | 55.0% | |
GGAAGCGATGGCAACACTAC+AGG | - | chr1_1:79940244-79940263 | Msa0047230:intron | 55.0% | |
! | CTCAAACGAGGTGCCAGTCT+TGG | + | chr1_1:79940593-79940612 | None:intergenic | 55.0% |
ACAAGGCTGTGGAACACTGG+TGG | + | chr1_1:79940886-79940905 | None:intergenic | 55.0% | |
ACCAGTGTTCCACAGCCTTG+TGG | - | chr1_1:79940885-79940904 | Msa0047230:intron | 55.0% | |
TCCACAAGGCTGTGGAACAC+TGG | + | chr1_1:79940889-79940908 | None:intergenic | 55.0% | |
GGCAAAACTCCACAAGGCTG+TGG | + | chr1_1:79940897-79940916 | None:intergenic | 55.0% | |
ACCTGCATCCAAGCTTCAGG+AGG | + | chr1_1:79940918-79940937 | None:intergenic | 55.0% | |
GTGAGCTGAAACGTGAGAGG+AGG | - | chr1_1:79941081-79941100 | Msa0047230:intron | 55.0% | |
CTTATGGCCATGCCATACGC+TGG | + | chr1_1:79941310-79941329 | None:intergenic | 55.0% | |
ACATGCATCAGGGCCGTGTT+TGG | + | chr1_1:79941496-79941515 | None:intergenic | 55.0% | |
GCAGCGACGCGTCATATTGA+AGG | + | chr1_1:79941893-79941912 | None:intergenic | 55.0% | |
TGACCTGGGGGAAACTACGC+AGG | - | chr1_1:79939944-79939963 | Msa0047230:intron | 60.0% | |
! | AGTGCTGAGCTAGCGTGGAG+AGG | - | chr1_1:79940043-79940062 | Msa0047230:intron | 60.0% |
GCCTCCTGAAGCTTGGATGC+AGG | - | chr1_1:79940914-79940933 | Msa0047230:intron | 60.0% | |
CAGCCTGCGTAGTTTCCCCC+AGG | + | chr1_1:79939950-79939969 | None:intergenic | 65.0% | |
CTGGGGGAAACTACGCAGGC+TGG | - | chr1_1:79939948-79939967 | Msa0047230:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 79939133 | 79942323 | 79939133 | ID=Msa0047230;Name=Msa0047230 |
chr1_1 | mRNA | 79939133 | 79942323 | 79939133 | ID=Msa0047230-mRNA-1;Parent=Msa0047230;Name=Msa0047230-mRNA-1;_AED=0.19;_eAED=0.19;_QI=793|1|1|1|0.33|0.42|7|593|147 |
chr1_1 | exon | 79939133 | 79939866 | 79939133 | ID=Msa0047230-mRNA-1:exon:27623;Parent=Msa0047230-mRNA-1 |
chr1_1 | exon | 79940299 | 79940382 | 79940299 | ID=Msa0047230-mRNA-1:exon:27622;Parent=Msa0047230-mRNA-1 |
chr1_1 | exon | 79940521 | 79940739 | 79940521 | ID=Msa0047230-mRNA-1:exon:27621;Parent=Msa0047230-mRNA-1 |
chr1_1 | exon | 79941189 | 79941245 | 79941189 | ID=Msa0047230-mRNA-1:exon:27620;Parent=Msa0047230-mRNA-1 |
chr1_1 | exon | 79941372 | 79941490 | 79941372 | ID=Msa0047230-mRNA-1:exon:27619;Parent=Msa0047230-mRNA-1 |
chr1_1 | exon | 79941595 | 79941856 | 79941595 | ID=Msa0047230-mRNA-1:exon:27618;Parent=Msa0047230-mRNA-1 |
chr1_1 | exon | 79941969 | 79942323 | 79941969 | ID=Msa0047230-mRNA-1:exon:27617;Parent=Msa0047230-mRNA-1 |
chr1_1 | five_prime_UTR | 79941969 | 79942323 | 79941969 | ID=Msa0047230-mRNA-1:five_prime_utr;Parent=Msa0047230-mRNA-1 |
chr1_1 | five_prime_UTR | 79941595 | 79941856 | 79941595 | ID=Msa0047230-mRNA-1:five_prime_utr;Parent=Msa0047230-mRNA-1 |
chr1_1 | five_prime_UTR | 79941372 | 79941490 | 79941372 | ID=Msa0047230-mRNA-1:five_prime_utr;Parent=Msa0047230-mRNA-1 |
chr1_1 | five_prime_UTR | 79941189 | 79941245 | 79941189 | ID=Msa0047230-mRNA-1:five_prime_utr;Parent=Msa0047230-mRNA-1 |
chr1_1 | CDS | 79940521 | 79940739 | 79940521 | ID=Msa0047230-mRNA-1:cds;Parent=Msa0047230-mRNA-1 |
chr1_1 | CDS | 79940299 | 79940382 | 79940299 | ID=Msa0047230-mRNA-1:cds;Parent=Msa0047230-mRNA-1 |
chr1_1 | CDS | 79939726 | 79939866 | 79939726 | ID=Msa0047230-mRNA-1:cds;Parent=Msa0047230-mRNA-1 |
chr1_1 | three_prime_UTR | 79939133 | 79939725 | 79939133 | ID=Msa0047230-mRNA-1:three_prime_utr;Parent=Msa0047230-mRNA-1 |
Gene Sequence |
Protein sequence |