AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093190 MtrunA17_Chr7g0227131 90.855 339 22 2 3 333 2 339 0.0 623
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093190 AT3G27110.1 78.261 299 58 1 24 322 44 335 4.43e-176 491
Msa1093190 AT3G27110.2 78.261 299 58 1 24 322 44 335 4.43e-176 491
Msa1093190 AT3G27110.5 77.273 264 53 1 24 287 44 300 1.20e-152 431
Msa1093190 AT3G27110.3 75.113 221 48 1 25 245 45 258 2.73e-120 348
Msa1093190 AT3G27110.4 75.229 218 47 1 25 242 45 255 2.61e-119 345

Find 101 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGATCTTCACAACTTAA+TGG 0.245117 7_3:-12663683 Msa1093190:CDS
GCGTGATGATATTATTATTT+GGG 0.251632 7_3:+12666494 None:intergenic
AATAAAACTTAATGCTTTCC+TGG 0.283687 7_3:+12661003 None:intergenic
AGCGTGATGATATTATTATT+TGG 0.292086 7_3:+12666493 None:intergenic
CAACAGTTCAATGTTCTTCA+TGG 0.316034 7_3:-12662008 Msa1093190:intron
CCTGACAAGAGCTGAATTGC+AGG 0.321973 7_3:-12663527 Msa1093190:intron
AGCTGGTGGATGCCCGTCTT+TGG 0.353740 7_3:-12662380 Msa1093190:CDS
TTCAAAGATCCGGTCAATTC+GGG 0.360013 7_3:-12666326 Msa1093190:CDS
GAAGTGGGAAAAGCTCTTCT+AGG 0.370728 7_3:-12665817 Msa1093190:intron
GTTCAAAGATCCGGTCAATT+CGG 0.370768 7_3:-12666327 Msa1093190:CDS
CGCTTTCCTTGCTTCGCCTT+CGG 0.376023 7_3:-12666374 Msa1093190:CDS
TAGATGAGTTTCTAACTTGT+TGG 0.378720 7_3:+12660791 None:intergenic
ATAGCTAATGTATATGCATT+TGG 0.379911 7_3:+12663598 None:intergenic
TTGAACTGCCACCACCGAAC+CGG 0.381380 7_3:+12666344 None:intergenic
ATCATAAGAGTATGCTTGTA+TGG 0.384664 7_3:-12666734 Msa1093190:five_prime_UTR
TATTCATACAATATATATAC+AGG 0.393192 7_3:+12660732 None:intergenic
AACCTTATGTACCATCCAAC+AGG 0.398313 7_3:+12662292 None:intergenic
TTTCCCACTTCTTTCAATCC+TGG 0.411937 7_3:+12665829 None:intergenic
TATGCAAATATTCTAACTCT+TGG 0.420212 7_3:-12663187 Msa1093190:CDS
CTAGAAACAGTTAATTCAGC+TGG 0.426446 7_3:+12666286 None:intergenic
CATAAGAGCGAGCTTGCTCC+AGG 0.426915 7_3:+12662332 None:intergenic
ACTAAATGTCGATGCATTCC+TGG 0.427125 7_3:-12662350 Msa1093190:CDS
AACGGAGGAAGCCATGGAAA+TGG 0.429495 7_3:+12666417 None:intergenic
CCTGCAATTCAGCTCTTGTC+AGG 0.439183 7_3:+12663527 None:intergenic
TCGTCACCCTGTTGATAAAG+AGG 0.439251 7_3:-12666218 Msa1093190:intron
GCCCTGTTGGATGGTACATA+AGG 0.450739 7_3:-12662294 Msa1093190:intron
TTCTTGTTGCTCAAGACCCT+AGG 0.451122 7_3:-12662537 Msa1093190:CDS
CTTCGCCTTCGGCTAGAGCC+CGG 0.453136 7_3:-12666363 Msa1093190:CDS
CATGTAGTGCAATGCAGAAA+TGG 0.453306 7_3:-12661034 Msa1093190:intron
TTCTTACAATTCCATTTCCA+TGG 0.460892 7_3:-12666428 Msa1093190:exon
TGAACTGCCACCACCGAACC+GGG 0.470402 7_3:+12666345 None:intergenic
ATCTTTGCTGTTGGTGTGAT+CGG 0.470636 7_3:+12662061 None:intergenic
TATTGGAGGTTTGATAGCTC+AGG 0.473708 7_3:-12662623 Msa1093190:CDS
AACAATCAAAATGAATATAC+AGG 0.474063 7_3:+12660919 None:intergenic
CTAGTATGAATAACGACAAA+TGG 0.474623 7_3:+12663562 None:intergenic
TTGATGCTGAGAGCGATTCC+AGG 0.477350 7_3:-12665847 Msa1093190:CDS
TTTGTTACGGATTGACGTAA+AGG 0.486168 7_3:+12666532 None:intergenic
ATTTCACTAGCACGTAGAAC+AGG 0.489038 7_3:+12662141 None:intergenic
TATTCTGAACCCGAATTGAC+CGG 0.496068 7_3:+12666317 None:intergenic
CTTTGACGAACATATAGATC+AGG 0.496513 7_3:+12663628 None:intergenic
TTGAAGTTGAAAGTTTGTTA+CGG 0.497484 7_3:+12666519 None:intergenic
CAGGCAGAGGATGCGAAAGT+TGG 0.502736 7_3:+12662160 None:intergenic
AAAGCTGCTTCCAGCCCTGT+TGG 0.504883 7_3:-12662307 Msa1093190:CDS
GAAAGAAACGGAGGAAGCCA+TGG 0.505736 7_3:+12666411 None:intergenic
CCTTCGGCTAGAGCCCGGTT+CGG 0.507401 7_3:-12666358 Msa1093190:CDS
ATTTACTGATCCACGGTATG+AGG 0.511695 7_3:+12660947 None:intergenic
AGGTTTGATAGCTCAGGCTC+TGG 0.513918 7_3:-12662617 Msa1093190:CDS
GCAGAAATGGTGAAAGGTCC+AGG 0.515866 7_3:-12661021 Msa1093190:three_prime_UTR
ACTGCTAGAATCTTTGCTGT+TGG 0.520020 7_3:+12662052 None:intergenic
GCATATACATTAGCTATAAG+TGG 0.522878 7_3:-12663592 Msa1093190:CDS
TCTGTCCTCATGAAATTAGC+TGG 0.527257 7_3:-12662397 Msa1093190:CDS
TTAGTTGATCAGCCAAAGAC+GGG 0.529495 7_3:+12662368 None:intergenic
TCTTGTTGCTCAAGACCCTA+GGG 0.534728 7_3:-12662536 Msa1093190:intron
TCATGCTCCTTGAGAACATA+GGG 0.535093 7_3:-12664368 Msa1093190:CDS
CTTGGAGCCTATACTGTACC+TGG 0.537441 7_3:-12663169 Msa1093190:intron
TCACGTACCAGGTACAGTAT+AGG 0.538352 7_3:+12663162 None:intergenic
GTGGTGGCAGTTCAAAGATC+CGG 0.540446 7_3:-12666336 Msa1093190:CDS
TGCAGGAACTGTAACAGAGC+AGG 0.540675 7_3:-12664391 Msa1093190:intron
TATGTACCATCCAACAGGGC+TGG 0.551733 7_3:+12662297 None:intergenic
CGTGATGATATTATTATTTG+GGG 0.555314 7_3:+12666495 None:intergenic
CTCTAGCCGAAGGCGAAGCA+AGG 0.557684 7_3:+12666368 None:intergenic
AATGTATATGCATTTGGCAC+AGG 0.558363 7_3:+12663604 None:intergenic
CTGCTTCCAGCCCTGTTGGA+TGG 0.559469 7_3:-12662303 Msa1093190:CDS
TTTAGTTGATCAGCCAAAGA+CGG 0.561251 7_3:+12662367 None:intergenic
GAAGTGACAACCACAGCTGC+GGG 0.565611 7_3:+12666554 None:intergenic
CGTTATTCATACTAGCCTAG+TGG 0.579473 7_3:-12663554 Msa1093190:CDS
CGGATGTCCCTATGTTCTCA+AGG 0.581254 7_3:+12664361 None:intergenic
GACGAAAATCATCAGCATCA+AGG 0.584171 7_3:+12666236 None:intergenic
AGAGAGAGAGAAATGGAATG+CGG 0.587035 7_3:+12666463 None:intergenic
ATCAGCATCAAGGTCACGAA+AGG 0.587461 7_3:+12666246 None:intergenic
CTCTTGTCAGGAGCTCCACT+AGG 0.594754 7_3:+12663539 None:intergenic
TGGAAGAGCAGATATTCCGC+TGG 0.599292 7_3:-12662597 Msa1093190:CDS
GGTCACCTAAAATGTGATCA+TGG 0.600504 7_3:-12663223 Msa1093190:CDS
TGCAATGCAGAAATGGTGAA+AGG 0.604867 7_3:-12661027 Msa1093190:three_prime_UTR
GTCATGCTCCTTGAGAACAT+AGG 0.610257 7_3:-12664369 Msa1093190:CDS
GAAAGAATTACCCGCAGCTG+TGG 0.612140 7_3:-12666564 Msa1093190:five_prime_UTR
ATTCCAGGATTGAAAGAAGT+GGG 0.612551 7_3:-12665832 Msa1093190:CDS
CGAAAGGCTAAAGCAGCAGA+AGG 0.612586 7_3:+12666262 None:intergenic
TGCTGTTGGTGTGATCGGAT+AGG 0.619664 7_3:+12662066 None:intergenic
GGAAGTGACAACCACAGCTG+CGG 0.621891 7_3:+12666553 None:intergenic
GATTCCAGGATTGAAAGAAG+TGG 0.623258 7_3:-12665833 Msa1093190:CDS
GTAATGACAGAGTTAGCGAT+TGG 0.623331 7_3:-12666700 Msa1093190:five_prime_UTR
GGCGAAGCAAGGAAAGCGAA+TGG 0.627188 7_3:+12666379 None:intergenic
GTGCTAGTGAAATTGATGAA+TGG 0.627866 7_3:-12662131 Msa1093190:CDS
TTTGACGAACATATAGATCA+GGG 0.629522 7_3:+12663629 None:intergenic
TGGCTGAGAAAAGAAAGAAA+CGG 0.639381 7_3:+12666399 None:intergenic
GTCCTCATGAAATTAGCTGG+TGG 0.641650 7_3:-12662394 Msa1093190:CDS
TGATCTTCACAACTTAATGG+CGG 0.645851 7_3:-12663680 Msa1093190:CDS
GGTAGAGATTTACTGATCCA+CGG 0.647971 7_3:+12660940 None:intergenic
CTAGCACGTAGAACAGGCAG+AGG 0.658580 7_3:+12662147 None:intergenic
ATTCAGCTGCTCGAAGCCAG+CGG 0.664309 7_3:+12662581 None:intergenic
ATCCACCAGCTAATTTCATG+AGG 0.667291 7_3:+12662392 None:intergenic
AAAACTATTACCTCATACCG+TGG 0.668572 7_3:-12660957 Msa1093190:three_prime_UTR
TTGTGCATTTAGAACAATGT+GGG 0.674780 7_3:+12662028 None:intergenic
ACCTTATGTACCATCCAACA+GGG 0.698309 7_3:+12662293 None:intergenic
TTAGAGTCAAGACAACGAAG+TGG 0.699001 7_3:-12666590 Msa1093190:five_prime_UTR
CTGAGAAAAGAAAGAAACGG+AGG 0.703060 7_3:+12666402 None:intergenic
TTGACGAACATATAGATCAG+GGG 0.713505 7_3:+12663630 None:intergenic
ATTCATACAATATATATACA+GGG 0.713586 7_3:+12660733 None:intergenic
TAAAATGTGATCATGGTGTG+TGG 0.732769 7_3:-12663216 Msa1093190:CDS
GTTGTGCATTTAGAACAATG+TGG 0.747047 7_3:+12662027 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACTTATTTATGTAAT+AGG - chr7_3:12662170-12662189 Msa1093190:CDS 10.0%
!!! TTTATTTTAATTTAATAGCA+AGG - chr7_3:12662763-12662782 Msa1093190:intron 10.0%
!! TATAAATTCATAGAAATAAG+AGG - chr7_3:12661819-12661838 Msa1093190:intron 15.0%
!! TTATTATTAATAGAACAGTT+AGG + chr7_3:12662346-12662365 None:intergenic 15.0%
!! ATGAATATAAAATCAAAACA+GGG + chr7_3:12664140-12664159 None:intergenic 15.0%
!! AATGAATATAAAATCAAAAC+AGG + chr7_3:12664141-12664160 None:intergenic 15.0%
!! TAATAATGTGTATGTATATA+AGG - chr7_3:12664336-12664355 Msa1093190:intron 15.0%
!! TAAAAACCAATTATTTGATT+GGG + chr7_3:12664653-12664672 None:intergenic 15.0%
!! ATAAAAACCAATTATTTGAT+TGG + chr7_3:12664654-12664673 None:intergenic 15.0%
!!! GCATTAAGTTTTATTTATTA+TGG - chr7_3:12666459-12666478 Msa1093190:five_prime_UTR 15.0%
!!! TAGAATATACAAGTAATTTT+TGG + chr7_3:12666635-12666654 None:intergenic 15.0%
!! ATTCATACAATATATATACA+GGG + chr7_3:12666724-12666743 None:intergenic 15.0%
!! TATTCATACAATATATATAC+AGG + chr7_3:12666725-12666744 None:intergenic 15.0%
!! AGCATTAACTAAAAATTGAA+CGG + chr7_3:12661360-12661379 None:intergenic 20.0%
!! ATCAGCTATTAAATGATTAA+TGG + chr7_3:12661756-12661775 None:intergenic 20.0%
!! CTTATTTATGTAATAGGAAT+TGG - chr7_3:12662176-12662195 Msa1093190:CDS 20.0%
!!! TCTATCCTTCTAAAAAATTT+GGG + chr7_3:12662515-12662534 None:intergenic 20.0%
!!! TTCTATCCTTCTAAAAAATT+TGG + chr7_3:12662516-12662535 None:intergenic 20.0%
!! TACTACTTCATACTTATTTA+CGG - chr7_3:12662680-12662699 Msa1093190:intron 20.0%
!!! ATGAACAAAGCTTTTATAAA+TGG + chr7_3:12662844-12662863 None:intergenic 20.0%
!!! GAAGTTTTGTGTTTTTTTTT+TGG - chr7_3:12663259-12663278 Msa1093190:intron 20.0%
!! GGAAATAACATAAAAGAAAA+CGG + chr7_3:12663450-12663469 None:intergenic 20.0%
!! GTTATACTAGTTAAGAAATT+GGG + chr7_3:12663987-12664006 None:intergenic 20.0%
!! TGTTATACTAGTTAAGAAAT+TGG + chr7_3:12663988-12664007 None:intergenic 20.0%
!! GTTTGACTATTAAATTGATA+AGG + chr7_3:12664118-12664137 None:intergenic 20.0%
!!! TGATTTTATATTCATTGTTC+TGG - chr7_3:12664145-12664164 Msa1093190:intron 20.0%
!!! TCTGAAGATTTTAATTATGT+TGG - chr7_3:12664383-12664402 Msa1093190:CDS 20.0%
!! TTCATAATTTATCTGTAGAT+TGG - chr7_3:12664957-12664976 Msa1093190:intron 20.0%
!! TTGCAATTCAACTTTAATAT+CGG + chr7_3:12665222-12665241 None:intergenic 20.0%
!!! TATAAATCTATTTTGAAACG+TGG - chr7_3:12665361-12665380 Msa1093190:intron 20.0%
!! TTCTATCAAGTTAATATTAC+TGG + chr7_3:12665679-12665698 None:intergenic 20.0%
!!! ATGTTTTAGTAAATGAAACT+CGG + chr7_3:12665818-12665837 None:intergenic 20.0%
!! ATTAGTTAAAATTGCTTATG+TGG + chr7_3:12666159-12666178 None:intergenic 20.0%
!! CAAATTAACAGCATATTATA+TGG + chr7_3:12666323-12666342 None:intergenic 20.0%
!! ATATTAGTGAGAAATGAAAT+CGG + chr7_3:12666379-12666398 None:intergenic 20.0%
!! AACAATCAAAATGAATATAC+AGG + chr7_3:12666538-12666557 None:intergenic 20.0%
!!! AAGTAATTTTTGGTTTCAAA+GGG + chr7_3:12666625-12666644 None:intergenic 20.0%
!!! TTGAAGTTGAAAGTTTGTTA+CGG + chr7_3:12660938-12660957 None:intergenic 25.0%
! CGTGATGATATTATTATTTG+GGG + chr7_3:12660962-12660981 None:intergenic 25.0%
! GCGTGATGATATTATTATTT+GGG + chr7_3:12660963-12660982 None:intergenic 25.0%
! AGCGTGATGATATTATTATT+TGG + chr7_3:12660964-12660983 None:intergenic 25.0%
! AAAAAACCTCTTTATCAACA+GGG + chr7_3:12661245-12661264 None:intergenic 25.0%
! AAAAAAACCTCTTTATCAAC+AGG + chr7_3:12661246-12661265 None:intergenic 25.0%
!! TTTGGATTGATGATACAAAA+TGG + chr7_3:12661283-12661302 None:intergenic 25.0%
! AATCATTTAATAGCTGATAG+TGG - chr7_3:12661758-12661777 Msa1093190:intron 25.0%
! GGGTTAATTTCAGATAAATA+TGG - chr7_3:12661856-12661875 Msa1093190:intron 25.0%
! ATCGCTAAAATATTGTAAGT+TGG - chr7_3:12661958-12661977 Msa1093190:intron 25.0%
!!! AATTACTTTTTACCTAGAAG+AGG + chr7_3:12662424-12662443 None:intergenic 25.0%
! GAAGTAGTATATACCATATA+GGG + chr7_3:12662669-12662688 None:intergenic 25.0%
! TGAAGTAGTATATACCATAT+AGG + chr7_3:12662670-12662689 None:intergenic 25.0%
! AAGTTGTATGTGCTATATTT+AGG - chr7_3:12662710-12662729 Msa1093190:intron 25.0%
! TTAATTTAATAGCAAGGACT+TGG - chr7_3:12662769-12662788 Msa1093190:intron 25.0%
! TAAATGGAAAACAATAACCA+TGG + chr7_3:12662828-12662847 None:intergenic 25.0%
!! TGTTAAAGATACCTGATTTT+TGG + chr7_3:12663128-12663147 None:intergenic 25.0%
! AAAAACACAAAACTTCGAAT+AGG + chr7_3:12663255-12663274 None:intergenic 25.0%
! ACATCACATATTGTTATACA+TGG + chr7_3:12663376-12663395 None:intergenic 25.0%
! TATAGAAATACATTCGCAAT+GGG + chr7_3:12663496-12663515 None:intergenic 25.0%
! ATATAGAAATACATTCGCAA+TGG + chr7_3:12663497-12663516 None:intergenic 25.0%
!! TAACTAATGTTGTGTTATTG+TGG - chr7_3:12663740-12663759 Msa1093190:intron 25.0%
! ATAGCTAATGTATATGCATT+TGG + chr7_3:12663859-12663878 None:intergenic 25.0%
!! ATAAGGAAAGTTTGAAATGA+TGG + chr7_3:12664101-12664120 None:intergenic 25.0%
! TATGCAAATATTCTAACTCT+TGG - chr7_3:12664267-12664286 Msa1093190:intron 25.0%
! ACATTATAGAGAGATCTTTA+TGG + chr7_3:12664482-12664501 None:intergenic 25.0%
!! CATTTTCAAAGATGAAAACA+AGG + chr7_3:12664511-12664530 None:intergenic 25.0%
! TTAGTATCCCATTTATATGT+AGG + chr7_3:12664554-12664573 None:intergenic 25.0%
!! ATAAATGGGATACTAAGTTT+TGG - chr7_3:12664558-12664577 Msa1093190:intron 25.0%
! ATTATTTGATTGGGTAAAGA+AGG + chr7_3:12664644-12664663 None:intergenic 25.0%
! TCTTTACCCAATCAAATAAT+TGG - chr7_3:12664644-12664663 Msa1093190:intron 25.0%
! AGAATTTCTGTATCATTTGT+TGG - chr7_3:12664987-12665006 Msa1093190:intron 25.0%
!!! GCTGAATTTTTCTTTTGATT+AGG - chr7_3:12665257-12665276 Msa1093190:intron 25.0%
! TGCACATATATAATATACGA+TGG - chr7_3:12665608-12665627 Msa1093190:intron 25.0%
!!! TTAATATTACTGGTACTGAT+GGG + chr7_3:12665669-12665688 None:intergenic 25.0%
! GAGTTAAGATACAATAGATA+AGG - chr7_3:12665867-12665886 Msa1093190:intron 25.0%
! ATGAGATACTTATAATGAGA+TGG - chr7_3:12665969-12665988 Msa1093190:intron 25.0%
! GAAAACAGATGTATTATAGA+AGG - chr7_3:12666006-12666025 Msa1093190:intron 25.0%
! AGATGTATTATAGAAGGAAA+AGG - chr7_3:12666012-12666031 Msa1093190:intron 25.0%
! TTAACAGCATATTATATGGA+AGG + chr7_3:12666319-12666338 None:intergenic 25.0%
! AATAAAACTTAATGCTTTCC+TGG + chr7_3:12666454-12666473 None:intergenic 25.0%
!!! AGTAGAATTTTGATGATAAG+AGG - chr7_3:12666578-12666597 Msa1093190:five_prime_UTR 25.0%
!!! GTAGAATTTTGATGATAAGA+GGG - chr7_3:12666579-12666598 Msa1093190:five_prime_UTR 25.0%
!!! CAAGTAATTTTTGGTTTCAA+AGG + chr7_3:12666626-12666645 None:intergenic 25.0%
! ATCATAAGAGTATGCTTGTA+TGG - chr7_3:12660720-12660739 Msa1093190:three_prime_UTR 30.0%
TTCTTACAATTCCATTTCCA+TGG - chr7_3:12661026-12661045 Msa1093190:three_prime_UTR 30.0%
ACAAAATGGAATCAGTTAAG+AGG + chr7_3:12661269-12661288 None:intergenic 30.0%
TAAAAGTTGCATGAGAACTA+AGG + chr7_3:12661311-12661330 None:intergenic 30.0%
! AGTTCTCATGCAACTTTTAA+AGG - chr7_3:12661312-12661331 Msa1093190:intron 30.0%
AGATATTCGTTACAGTTCAA+AGG + chr7_3:12661683-12661702 None:intergenic 30.0%
TAAGAGGCTGTTTAAGAAAA+TGG - chr7_3:12661835-12661854 Msa1093190:intron 30.0%
AAGAGGCTGTTTAAGAAAAT+GGG - chr7_3:12661836-12661855 Msa1093190:intron 30.0%
CATCAAAAACCTTGATTCTA+CGG - chr7_3:12661911-12661930 Msa1093190:intron 30.0%
! ATTGTAAGTTGGAGATTAGA+AGG - chr7_3:12661969-12661988 Msa1093190:intron 30.0%
!! GAACTGATAAAGTATTGATG+CGG - chr7_3:12662125-12662144 Msa1093190:CDS 30.0%
! ATGTCAATCTTCTATTGACT+TGG - chr7_3:12662203-12662222 Msa1093190:intron 30.0%
CTTATACAAGAATTAGTCGA+GGG - chr7_3:12662250-12662269 Msa1093190:intron 30.0%
ATAGAACAGTTAGGTAATCT+GGG + chr7_3:12662337-12662356 None:intergenic 30.0%
AATAGAACAGTTAGGTAATC+TGG + chr7_3:12662338-12662357 None:intergenic 30.0%
ATAAATTTCCATCCTCTTCT+AGG - chr7_3:12662409-12662428 Msa1093190:CDS 30.0%
CATGAGACAAACTCATATTT+AGG - chr7_3:12662461-12662480 Msa1093190:intron 30.0%
! TCATATTTAGGCCTTTTTAC+TGG - chr7_3:12662473-12662492 Msa1093190:intron 30.0%
! CATATTTAGGCCTTTTTACT+GGG - chr7_3:12662474-12662493 Msa1093190:intron 30.0%
TGAATAGAAGTGATATTTCC+CGG + chr7_3:12662575-12662594 None:intergenic 30.0%
TTGTATGTGCTATATTTAGG+TGG - chr7_3:12662713-12662732 Msa1093190:intron 30.0%
! AACAAATCAATTTTCCCACT+AGG + chr7_3:12662960-12662979 None:intergenic 30.0%
TCCACTCTTACTATATGAAA+AGG - chr7_3:12663288-12663307 Msa1093190:intron 30.0%
CCACTCTTACTATATGAAAA+GGG - chr7_3:12663289-12663308 Msa1093190:intron 30.0%
CAACACTTATTCTTCATTTG+AGG + chr7_3:12663471-12663490 None:intergenic 30.0%
! ACTTGTTACCAACTTAGTAA+TGG - chr7_3:12663550-12663569 Msa1093190:CDS 30.0%
!! GGTTTTGTCACATAATTTAC+AGG + chr7_3:12663674-12663693 None:intergenic 30.0%
ATAAATACAGAGTAACTGGA+TGG + chr7_3:12663695-12663714 None:intergenic 30.0%
TGACATAAATACAGAGTAAC+TGG + chr7_3:12663699-12663718 None:intergenic 30.0%
CAACATTAGTTAGTTCAATG+AGG + chr7_3:12663732-12663751 None:intergenic 30.0%
TTCTGATCTTCACAACTTAA+TGG - chr7_3:12663771-12663790 Msa1093190:intron 30.0%
TTTGACGAACATATAGATCA+GGG + chr7_3:12663828-12663847 None:intergenic 30.0%
GCATATACATTAGCTATAAG+TGG - chr7_3:12663862-12663881 Msa1093190:intron 30.0%
CTAGTATGAATAACGACAAA+TGG + chr7_3:12663895-12663914 None:intergenic 30.0%
! TGCAGGTTCTAATTTATTTG+TGG - chr7_3:12663944-12663963 Msa1093190:intron 30.0%
GTGTATGTATATAAGGCATA+TGG - chr7_3:12664343-12664362 Msa1093190:CDS 30.0%
ATGTTACTCATACCACATAA+TGG - chr7_3:12664456-12664475 Msa1093190:intron 30.0%
ACCTAGTACCTACATATAAA+TGG - chr7_3:12664543-12664562 Msa1093190:intron 30.0%
CCTAGTACCTACATATAAAT+GGG - chr7_3:12664544-12664563 Msa1093190:intron 30.0%
ATTAAAAGTAGCACACAGAA+TGG + chr7_3:12664747-12664766 None:intergenic 30.0%
ATTAAACGAATTGGAATAGC+TGG + chr7_3:12664789-12664808 None:intergenic 30.0%
GAGGTGATTATTAAACGAAT+TGG + chr7_3:12664798-12664817 None:intergenic 30.0%
!! TAATCACCTCCATTTGTTTT+AGG - chr7_3:12664808-12664827 Msa1093190:intron 30.0%
CAATTCAACTTTAATATCGG+TGG + chr7_3:12665219-12665238 None:intergenic 30.0%
! TTGTGCATTTAGAACAATGT+GGG + chr7_3:12665429-12665448 None:intergenic 30.0%
! GTTAATATTACTGGTACTGA+TGG + chr7_3:12665670-12665689 None:intergenic 30.0%
!!! TTTTTTGTTGAGACCTTAAG+AGG + chr7_3:12666098-12666117 None:intergenic 30.0%
ATCTCTATTAGACACTTTGT+TGG - chr7_3:12666204-12666223 Msa1093190:intron 30.0%
TCTCTATTAGACACTTTGTT+GGG - chr7_3:12666205-12666224 Msa1093190:intron 30.0%
GCATATTATATGGAAGGAAA+AGG + chr7_3:12666313-12666332 None:intergenic 30.0%
TGATATCCATTACCATTATG+AGG - chr7_3:12666345-12666364 Msa1093190:CDS 30.0%
! TAGATGAGTTTCTAACTTGT+TGG + chr7_3:12666666-12666685 None:intergenic 30.0%
TTTGATGCCACAAGTTAGTT+TGG - chr7_3:12660784-12660803 Msa1093190:three_prime_UTR 35.0%
! TTGATGCCACAAGTTAGTTT+GGG - chr7_3:12660785-12660804 Msa1093190:three_prime_UTR 35.0%
! TTTGTTACGGATTGACGTAA+AGG + chr7_3:12660925-12660944 None:intergenic 35.0%
TGGCTGAGAAAAGAAAGAAA+CGG + chr7_3:12661058-12661077 None:intergenic 35.0%
CTAGAAACAGTTAATTCAGC+TGG + chr7_3:12661171-12661190 None:intergenic 35.0%
ATGAGAACTAAGGACATGTT+TGG + chr7_3:12661301-12661320 None:intergenic 35.0%
TAGCTGACACTTCAGATTAA+AGG - chr7_3:12661404-12661423 Msa1093190:intron 35.0%
! CTTCAGATTAAAGGTGTGTT+TGG - chr7_3:12661413-12661432 Msa1093190:intron 35.0%
ATTCCAGGATTGAAAGAAGT+GGG - chr7_3:12661622-12661641 Msa1093190:intron 35.0%
!! GAACTGTCCCTTTTTCATTT+CGG - chr7_3:12661780-12661799 Msa1093190:intron 35.0%
!! AACTGTCCCTTTTTCATTTC+GGG - chr7_3:12661781-12661800 Msa1093190:intron 35.0%
AGCAAACCCGAAATGAAAAA+GGG + chr7_3:12661790-12661809 None:intergenic 35.0%
TCAGATAAATATGGCTGATG+TGG - chr7_3:12661865-12661884 Msa1093190:intron 35.0%
!! ATTTTAGCGATACATTTCCG+TGG + chr7_3:12661949-12661968 None:intergenic 35.0%
!! AAAAGCATTATTGTACGCCA+CGG - chr7_3:12662075-12662094 Msa1093190:CDS 35.0%
AGCTCACTTAAATTGCCAAT+TGG + chr7_3:12662104-12662123 None:intergenic 35.0%
GACTAATTCTTGTATAAGCC+TGG + chr7_3:12662248-12662267 None:intergenic 35.0%
GCTTATACAAGAATTAGTCG+AGG - chr7_3:12662249-12662268 Msa1093190:intron 35.0%
TTTAATGCGAAGTTAACACG+TGG - chr7_3:12662306-12662325 Msa1093190:CDS 35.0%
! ACTTTTTACCTAGAAGAGGA+TGG + chr7_3:12662420-12662439 None:intergenic 35.0%
! CCTTCTAAAAAATTTGGGAC+AGG + chr7_3:12662510-12662529 None:intergenic 35.0%
!!! CCTGTCCCAAATTTTTTAGA+AGG - chr7_3:12662507-12662526 Msa1093190:intron 35.0%
GAAACTGTGTGAGTTATATC+CGG - chr7_3:12662553-12662572 Msa1093190:CDS 35.0%
AAACTGTGTGAGTTATATCC+GGG - chr7_3:12662554-12662573 Msa1093190:CDS 35.0%
TAGTATATACCATATAGGGC+TGG + chr7_3:12662665-12662684 None:intergenic 35.0%
TATGTGCTATATTTAGGTGG+AGG - chr7_3:12662716-12662735 Msa1093190:intron 35.0%
ATGTGCTATATTTAGGTGGA+GGG - chr7_3:12662717-12662736 Msa1093190:intron 35.0%
TTCCTGCAACTCATATAAAG+GGG + chr7_3:12663051-12663070 None:intergenic 35.0%
GTTCCTGCAACTCATATAAA+GGG + chr7_3:12663052-12663071 None:intergenic 35.0%
AGTTCCTGCAACTCATATAA+AGG + chr7_3:12663053-12663072 None:intergenic 35.0%
!! ATACCTGATTTTTGGAGACA+AGG + chr7_3:12663120-12663139 None:intergenic 35.0%
GGTTGAATACTATTCAACAC+AGG + chr7_3:12663227-12663246 None:intergenic 35.0%
ACAAAACTTCGAATAGGATG+CGG + chr7_3:12663249-12663268 None:intergenic 35.0%
! CCCTTTTCATATAGTAAGAG+TGG + chr7_3:12663292-12663311 None:intergenic 35.0%
! GAGTTCACACATACTCTTTT+AGG + chr7_3:12663428-12663447 None:intergenic 35.0%
!! ACTAAGTTGGTAACAAGTAG+AGG + chr7_3:12663548-12663567 None:intergenic 35.0%
CATTAGTTAGTTCAATGAGG+TGG + chr7_3:12663729-12663748 None:intergenic 35.0%
TGATCTTCACAACTTAATGG+CGG - chr7_3:12663774-12663793 Msa1093190:intron 35.0%
TTGACGAACATATAGATCAG+GGG + chr7_3:12663827-12663846 None:intergenic 35.0%
CTTTGACGAACATATAGATC+AGG + chr7_3:12663829-12663848 None:intergenic 35.0%
AATGTATATGCATTTGGCAC+AGG + chr7_3:12663853-12663872 None:intergenic 35.0%
CTTGTTTACCATGAAGAATG+GGG + chr7_3:12664026-12664045 None:intergenic 35.0%
GCTTGTTTACCATGAAGAAT+GGG + chr7_3:12664027-12664046 None:intergenic 35.0%
TGCTTGTTTACCATGAAGAA+TGG + chr7_3:12664028-12664047 None:intergenic 35.0%
ACGTGAATGATGTTGGATAT+GGG - chr7_3:12664073-12664092 Msa1093190:intron 35.0%
!! GCCATCAATTTACTTTTCAC+AGG - chr7_3:12664188-12664207 Msa1093190:intron 35.0%
GCCTGTGAAAAGTAAATTGA+TGG + chr7_3:12664192-12664211 None:intergenic 35.0%
!! TTACTTTTCACAGGCTGTTT+TGG - chr7_3:12664197-12664216 Msa1093190:intron 35.0%
! ACACACCATGATCACATTTT+AGG + chr7_3:12664239-12664258 None:intergenic 35.0%
TAAAATGTGATCATGGTGTG+TGG - chr7_3:12664238-12664257 Msa1093190:intron 35.0%
!!! CGTGATATGGAGCATTTTTT+AGG - chr7_3:12664310-12664329 Msa1093190:intron 35.0%
AGATCTTTATGGCCATTATG+TGG + chr7_3:12664471-12664490 None:intergenic 35.0%
CCCATTTATATGTAGGTACT+AGG + chr7_3:12664547-12664566 None:intergenic 35.0%
CCAATACCTAAAACAAATGG+AGG + chr7_3:12664817-12664836 None:intergenic 35.0%
!!! CCTCCATTTGTTTTAGGTAT+TGG - chr7_3:12664814-12664833 Msa1093190:intron 35.0%
CCTCCAATACCTAAAACAAA+TGG + chr7_3:12664820-12664839 None:intergenic 35.0%
!!! CCATTTGTTTTAGGTATTGG+AGG - chr7_3:12664817-12664836 Msa1093190:intron 35.0%
TTTAGTTGATCAGCCAAAGA+CGG + chr7_3:12665090-12665109 None:intergenic 35.0%
GTGCTAGTGAAATTGATGAA+TGG - chr7_3:12665323-12665342 Msa1093190:intron 35.0%
! GTTGTGCATTTAGAACAATG+TGG + chr7_3:12665430-12665449 None:intergenic 35.0%
CAACAGTTCAATGTTCTTCA+TGG - chr7_3:12665446-12665465 Msa1093190:intron 35.0%
TTGTTGCTAGTGTCTCATTT+GGG - chr7_3:12665742-12665761 Msa1093190:intron 35.0%
! TGCGACAAATAATTTGAGAC+AGG - chr7_3:12665934-12665953 Msa1093190:intron 35.0%
AGAGAAATGTCTCTTATCTG+AGG + chr7_3:12666065-12666084 None:intergenic 35.0%
AAAATTGCTTATGTGGCCTA+AGG + chr7_3:12666152-12666171 None:intergenic 35.0%
TCAAGTCCTCATAATGGTAA+TGG + chr7_3:12666354-12666373 None:intergenic 35.0%
AAAACTATTACCTCATACCG+TGG - chr7_3:12666497-12666516 Msa1093190:five_prime_UTR 35.0%
GTAATGACAGAGTTAGCGAT+TGG - chr7_3:12660754-12660773 Msa1093190:three_prime_UTR 40.0%
TTAGAGTCAAGACAACGAAG+TGG - chr7_3:12660864-12660883 Msa1093190:three_prime_UTR 40.0%
AGAGAGAGAGAAATGGAATG+CGG + chr7_3:12660994-12661013 None:intergenic 40.0%
CTGAGAAAAGAAAGAAACGG+AGG + chr7_3:12661055-12661074 None:intergenic 40.0%
GTTCAAAGATCCGGTCAATT+CGG - chr7_3:12661127-12661146 Msa1093190:intron 40.0%
TTCAAAGATCCGGTCAATTC+GGG - chr7_3:12661128-12661147 Msa1093190:intron 40.0%
TATTCTGAACCCGAATTGAC+CGG + chr7_3:12661140-12661159 None:intergenic 40.0%
GACGAAAATCATCAGCATCA+AGG + chr7_3:12661221-12661240 None:intergenic 40.0%
GTGCTCTGTGTTTATGTTAG+TGG - chr7_3:12661512-12661531 Msa1093190:intron 40.0%
GATTCCAGGATTGAAAGAAG+TGG - chr7_3:12661621-12661640 Msa1093190:intron 40.0%
TTTCCCACTTCTTTCAATCC+TGG + chr7_3:12661628-12661647 None:intergenic 40.0%
CAGCAAACCCGAAATGAAAA+AGG + chr7_3:12661791-12661810 None:intergenic 40.0%
TGGCTGCAATTGTAGTTGTA+TGG - chr7_3:12661885-12661904 Msa1093190:intron 40.0%
AAAAGATTACGAGTCGTGCA+TGG - chr7_3:12662019-12662038 Msa1093190:three_prime_UTR 40.0%
AAAGATTACGAGTCGTGCAT+GGG - chr7_3:12662020-12662039 Msa1093190:three_prime_UTR 40.0%
!! TTGACTTGGTACACCCAAAT+CGG - chr7_3:12662217-12662236 Msa1093190:intron 40.0%
! TTTAGGCCTTTTTACTGGGA+TGG - chr7_3:12662478-12662497 Msa1093190:intron 40.0%
! TTAGGCCTTTTTACTGGGAT+GGG - chr7_3:12662479-12662498 Msa1093190:intron 40.0%
AATCAAATGCCAGCCCTATA+TGG - chr7_3:12662653-12662672 Msa1093190:intron 40.0%
TGTGCTATATTTAGGTGGAG+GGG - chr7_3:12662718-12662737 Msa1093190:intron 40.0%
! GTTCATCTGAAATGTTCAGC+TGG - chr7_3:12662858-12662877 Msa1093190:intron 40.0%
GAAATGTTCAGCTGGATATC+AGG - chr7_3:12662866-12662885 Msa1093190:intron 40.0%
! AGCTTTTGATCCAGTTACTC+AGG - chr7_3:12663013-12663032 Msa1093190:intron 40.0%
CATGTCATAACCTGAGTAAC+TGG + chr7_3:12663026-12663045 None:intergenic 40.0%
CAGTTACTCAGGTTATGACA+TGG - chr7_3:12663024-12663043 Msa1093190:intron 40.0%
TCATGCTCCTTGAGAACATA+GGG - chr7_3:12663086-12663105 Msa1093190:intron 40.0%
!! CTGATTTTTGGAGACAAGGA+CGG + chr7_3:12663116-12663135 None:intergenic 40.0%
CAAAACTTCGAATAGGATGC+GGG + chr7_3:12663248-12663267 None:intergenic 40.0%
AGAGGAGCAAGTTAATTCAC+TGG + chr7_3:12663530-12663549 None:intergenic 40.0%
CAGAGCAACCATTACTAAGT+TGG + chr7_3:12663561-12663580 None:intergenic 40.0%
TAGTTCAATGAGGTGGCATA+AGG + chr7_3:12663722-12663741 None:intergenic 40.0%
! CGTTATTCATACTAGCCTAG+TGG - chr7_3:12663900-12663919 Msa1093190:intron 40.0%
AGAATGGGGAGAAAACTTCT+TGG + chr7_3:12664012-12664031 None:intergenic 40.0%
! AGTTTTCTCCCCATTCTTCA+TGG - chr7_3:12664015-12664034 Msa1093190:intron 40.0%
GACTTTGACGTGAATGATGT+TGG - chr7_3:12664066-12664085 Msa1093190:intron 40.0%
GACGTGAATGATGTTGGATA+TGG - chr7_3:12664072-12664091 Msa1093190:intron 40.0%
GGTCACCTAAAATGTGATCA+TGG - chr7_3:12664231-12664250 Msa1093190:intron 40.0%
! ACTGTTTTGTCTGACACCTA+TGG - chr7_3:12664412-12664431 Msa1093190:intron 40.0%
! TGACACCTATGGATTGAACT+GGG - chr7_3:12664423-12664442 Msa1093190:intron 40.0%
TCTTTCCCAGTTCAATCCAT+AGG + chr7_3:12664431-12664450 None:intergenic 40.0%
! TATTGGAGGTTTGATAGCTC+AGG - chr7_3:12664831-12664850 Msa1093190:intron 40.0%
TTTGACATCAGCATACCCTA+GGG + chr7_3:12664936-12664955 None:intergenic 40.0%
! TTTTGACATCAGCATACCCT+AGG + chr7_3:12664937-12664956 None:intergenic 40.0%
! TTGTTTTCCAACCCTACAAG+AGG - chr7_3:12665026-12665045 Msa1093190:intron 40.0%
AGAGATGACAACCTCTTGTA+GGG + chr7_3:12665040-12665059 None:intergenic 40.0%
TCTGTCCTCATGAAATTAGC+TGG - chr7_3:12665057-12665076 Msa1093190:intron 40.0%
ATCCACCAGCTAATTTCATG+AGG + chr7_3:12665065-12665084 None:intergenic 40.0%
TTAGTTGATCAGCCAAAGAC+GGG + chr7_3:12665089-12665108 None:intergenic 40.0%
ACTAAATGTCGATGCATTCC+TGG - chr7_3:12665104-12665123 Msa1093190:intron 40.0%
ACCTTATGTACCATCCAACA+GGG + chr7_3:12665164-12665183 None:intergenic 40.0%
AACCTTATGTACCATCCAAC+AGG + chr7_3:12665165-12665184 None:intergenic 40.0%
ATTTCACTAGCACGTAGAAC+AGG + chr7_3:12665316-12665335 None:intergenic 40.0%
!! ATCTTTGCTGTTGGTGTGAT+CGG + chr7_3:12665396-12665415 None:intergenic 40.0%
! ACTGCTAGAATCTTTGCTGT+TGG + chr7_3:12665405-12665424 None:intergenic 40.0%
CTTGTTGCTAGTGTCTCATT+TGG - chr7_3:12665741-12665760 Msa1093190:intron 40.0%
TGTTGAGACCTTAAGAGGTT+GGG + chr7_3:12666093-12666112 None:intergenic 40.0%
TTGTTGAGACCTTAAGAGGT+TGG + chr7_3:12666094-12666113 None:intergenic 40.0%
!! GTACAAAGGTGTTAGTTGCA+GGG + chr7_3:12666243-12666262 None:intergenic 40.0%
!! AGTACAAAGGTGTTAGTTGC+AGG + chr7_3:12666244-12666263 None:intergenic 40.0%
GCAACTAACACCTTTGTACT+TGG - chr7_3:12666244-12666263 Msa1093190:CDS 40.0%
AACACCTTTGTACTTGGTTC+AGG - chr7_3:12666250-12666269 Msa1093190:CDS 40.0%
ACACCTTTGTACTTGGTTCA+GGG - chr7_3:12666251-12666270 Msa1093190:CDS 40.0%
ATTCCCTGAACCAAGTACAA+AGG + chr7_3:12666257-12666276 None:intergenic 40.0%
TCGGTATCAAGTCCTCATAA+TGG + chr7_3:12666360-12666379 None:intergenic 40.0%
CATGTAGTGCAATGCAGAAA+TGG - chr7_3:12666420-12666439 Msa1093190:exon 40.0%
TGCAATGCAGAAATGGTGAA+AGG - chr7_3:12666427-12666446 Msa1093190:exon 40.0%
ATTTACTGATCCACGGTATG+AGG + chr7_3:12666510-12666529 None:intergenic 40.0%
GGTAGAGATTTACTGATCCA+CGG + chr7_3:12666517-12666536 None:intergenic 40.0%
GAGAGAGAGAGAGAGAGAAA+TGG + chr7_3:12661001-12661020 None:intergenic 45.0%
ATCAGCATCAAGGTCACGAA+AGG + chr7_3:12661211-12661230 None:intergenic 45.0%
! TCGTCACCCTGTTGATAAAG+AGG - chr7_3:12661236-12661255 Msa1093190:intron 45.0%
TCGTCGTACATGTATGTGTC+AGG - chr7_3:12661486-12661505 Msa1093190:intron 45.0%
GAAGTGGGAAAAGCTCTTCT+AGG - chr7_3:12661637-12661656 Msa1093190:intron 45.0%
TGATTGTGGCCGTAGAATCA+AGG + chr7_3:12661923-12661942 None:intergenic 45.0%
AAGATTACGAGTCGTGCATG+GGG - chr7_3:12662021-12662040 Msa1093190:three_prime_UTR 45.0%
AAATTGCCAATTGGCTACCG+TGG + chr7_3:12662095-12662114 None:intergenic 45.0%
AAGCCTGGTGTTTCCGATTT+GGG + chr7_3:12662233-12662252 None:intergenic 45.0%
TAAGCCTGGTGTTTCCGATT+TGG + chr7_3:12662234-12662253 None:intergenic 45.0%
TGCGAAGTTAACACGTGGTA+CGG - chr7_3:12662311-12662330 Msa1093190:CDS 45.0%
! TAGGCCTTTTTACTGGGATG+GGG - chr7_3:12662480-12662499 Msa1093190:intron 45.0%
AGTACCCCATCCCAGTAAAA+AGG + chr7_3:12662487-12662506 None:intergenic 45.0%
TGTGTGACATGATTGCACCA+TGG - chr7_3:12662808-12662827 Msa1093190:intron 45.0%
TGCTTGCTTTCAGATCCTAG+TGG - chr7_3:12662942-12662961 Msa1093190:intron 45.0%
GCTTGCTTTCAGATCCTAGT+GGG - chr7_3:12662943-12662962 Msa1093190:intron 45.0%
GTCCCCTTTATATGAGTTGC+AGG - chr7_3:12663046-12663065 Msa1093190:intron 45.0%
GTCATGCTCCTTGAGAACAT+AGG - chr7_3:12663085-12663104 Msa1093190:intron 45.0%
CGTCCTTGTCTCCAAAAATC+AGG - chr7_3:12663114-12663133 Msa1093190:intron 45.0%
!!! GCTGTTTTGGCTCATGAGTT+GGG - chr7_3:12664210-12664229 Msa1093190:intron 45.0%
TCACGTACCAGGTACAGTAT+AGG + chr7_3:12664295-12664314 None:intergenic 45.0%
ACTGTACCTGGTACGTGATA+TGG - chr7_3:12664297-12664316 Msa1093190:intron 45.0%
AATGCTCCATATCACGTACC+AGG + chr7_3:12664306-12664325 None:intergenic 45.0%
! CTGACACCTATGGATTGAAC+TGG - chr7_3:12664422-12664441 Msa1093190:intron 45.0%
TTCTTGTTGCTCAAGACCCT+AGG - chr7_3:12664917-12664936 Msa1093190:intron 45.0%
TCTTGTTGCTCAAGACCCTA+GGG - chr7_3:12664918-12664937 Msa1093190:intron 45.0%
ATGACAACCTCTTGTAGGGT+TGG + chr7_3:12665036-12665055 None:intergenic 45.0%
CAGAGATGACAACCTCTTGT+AGG + chr7_3:12665041-12665060 None:intergenic 45.0%
GTCCTCATGAAATTAGCTGG+TGG - chr7_3:12665060-12665079 Msa1093190:intron 45.0%
! ATCTGAGGAGCTTTTGCTCT+GGG + chr7_3:12666050-12666069 None:intergenic 45.0%
! TATCTGAGGAGCTTTTGCTC+TGG + chr7_3:12666051-12666070 None:intergenic 45.0%
TTGCTTATGTGGCCTAAGGA+AGG + chr7_3:12666148-12666167 None:intergenic 45.0%
AGGTGTTAGTTGCAGGGTTT+GGG + chr7_3:12666237-12666256 None:intergenic 45.0%
! AAGGTGTTAGTTGCAGGGTT+TGG + chr7_3:12666238-12666257 None:intergenic 45.0%
CGTTCGCCCAAACTAACTTG+TGG + chr7_3:12660794-12660813 None:intergenic 50.0%
GAAAGAATTACCCGCAGCTG+TGG - chr7_3:12660890-12660909 Msa1093190:three_prime_UTR 50.0%
AACGGAGGAAGCCATGGAAA+TGG + chr7_3:12661040-12661059 None:intergenic 50.0%
GAAAGAAACGGAGGAAGCCA+TGG + chr7_3:12661046-12661065 None:intergenic 50.0%
GTGGTGGCAGTTCAAAGATC+CGG - chr7_3:12661118-12661137 Msa1093190:intron 50.0%
CGAAAGGCTAAAGCAGCAGA+AGG + chr7_3:12661195-12661214 None:intergenic 50.0%
TTGATGCTGAGAGCGATTCC+AGG - chr7_3:12661607-12661626 Msa1093190:intron 50.0%
CATTTCCGTGGCTGTGATTG+TGG + chr7_3:12661937-12661956 None:intergenic 50.0%
AGATTACGAGTCGTGCATGG+GGG - chr7_3:12662022-12662041 Msa1093190:three_prime_UTR 50.0%
ACACCCAAATCGGAAACACC+AGG - chr7_3:12662227-12662246 Msa1093190:intron 50.0%
TGCAGGAACTGTAACAGAGC+AGG - chr7_3:12663063-12663082 Msa1093190:intron 50.0%
CGGATGTCCCTATGTTCTCA+AGG + chr7_3:12663096-12663115 None:intergenic 50.0%
CTGCGCGGAAATGACAGAAA+TGG + chr7_3:12663628-12663647 None:intergenic 50.0%
CCTGCAATTCAGCTCTTGTC+AGG + chr7_3:12663930-12663949 None:intergenic 50.0%
CCTGACAAGAGCTGAATTGC+AGG - chr7_3:12663927-12663946 Msa1093190:intron 50.0%
!!! GGCTGTTTTGGCTCATGAGT+TGG - chr7_3:12664209-12664228 Msa1093190:intron 50.0%
CTTGGAGCCTATACTGTACC+TGG - chr7_3:12664285-12664304 Msa1093190:intron 50.0%
! AGGTTTGATAGCTCAGGCTC+TGG - chr7_3:12664837-12664856 Msa1093190:intron 50.0%
TGGAAGAGCAGATATTCCGC+TGG - chr7_3:12664857-12664876 Msa1093190:intron 50.0%
TATGTACCATCCAACAGGGC+TGG + chr7_3:12665160-12665179 None:intergenic 50.0%
GCCCTGTTGGATGGTACATA+AGG - chr7_3:12665160-12665179 Msa1093190:intron 50.0%
TGCTGTTGGTGTGATCGGAT+AGG + chr7_3:12665391-12665410 None:intergenic 50.0%
!! GAGCTTTTGCTCTGGGTTAC+AGG + chr7_3:12666043-12666062 None:intergenic 50.0%
TCTCTCTGCCCAACCTCTTA+AGG - chr7_3:12666082-12666101 Msa1093190:intron 50.0%
CCTAAGGAAGGATAGCAAGG+GGG + chr7_3:12666136-12666155 None:intergenic 50.0%
GCCTAAGGAAGGATAGCAAG+GGG + chr7_3:12666137-12666156 None:intergenic 50.0%
GGCCTAAGGAAGGATAGCAA+GGG + chr7_3:12666138-12666157 None:intergenic 50.0%
TGGCCTAAGGAAGGATAGCA+AGG + chr7_3:12666139-12666158 None:intergenic 50.0%
GCAGAAATGGTGAAAGGTCC+AGG - chr7_3:12666433-12666452 Msa1093190:five_prime_UTR 50.0%
! GTTAGTTTGGGCGAACGCAG+TGG - chr7_3:12660797-12660816 Msa1093190:three_prime_UTR 55.0%
GAAGTGACAACCACAGCTGC+GGG + chr7_3:12660903-12660922 None:intergenic 55.0%
GGAAGTGACAACCACAGCTG+CGG + chr7_3:12660904-12660923 None:intergenic 55.0%
GGCGAAGCAAGGAAAGCGAA+TGG + chr7_3:12661078-12661097 None:intergenic 55.0%
CGCTTTCCTTGCTTCGCCTT+CGG - chr7_3:12661080-12661099 Msa1093190:intron 55.0%
TTGAACTGCCACCACCGAAC+CGG + chr7_3:12661113-12661132 None:intergenic 55.0%
TACGGCCACAATCACAGCCA+CGG - chr7_3:12661929-12661948 Msa1093190:intron 55.0%
GATTACGAGTCGTGCATGGG+GGG - chr7_3:12662023-12662042 Msa1093190:three_prime_UTR 55.0%
TGTACGCCACGGTAGCCAAT+TGG - chr7_3:12662086-12662105 Msa1093190:CDS 55.0%
CAGCAACATGTGCTGAGCAC+GGG + chr7_3:12662278-12662297 None:intergenic 55.0%
CCAGCAACATGTGCTGAGCA+CGG + chr7_3:12662279-12662298 None:intergenic 55.0%
TTCCGCGCAGTTCAGCTGTA+TGG - chr7_3:12663638-12663657 Msa1093190:CDS 55.0%
TGCCATACAGCTGAACTGCG+CGG + chr7_3:12663643-12663662 None:intergenic 55.0%
CTCTTGTCAGGAGCTCCACT+AGG + chr7_3:12663918-12663937 None:intergenic 55.0%
ATTCAGCTGCTCGAAGCCAG+CGG + chr7_3:12664876-12664895 None:intergenic 55.0%
! CATAAGAGCGAGCTTGCTCC+AGG + chr7_3:12665125-12665144 None:intergenic 55.0%
AAAGCTGCTTCCAGCCCTGT+TGG - chr7_3:12665147-12665166 Msa1093190:intron 55.0%
CAGGCAGAGGATGCGAAAGT+TGG + chr7_3:12665297-12665316 None:intergenic 55.0%
CTAGCACGTAGAACAGGCAG+AGG + chr7_3:12665310-12665329 None:intergenic 55.0%
! CCCCCTTGCTATCCTTCCTT+AGG - chr7_3:12666133-12666152 Msa1093190:intron 55.0%
CTCTAGCCGAAGGCGAAGCA+AGG + chr7_3:12661089-12661108 None:intergenic 60.0%
TGAACTGCCACCACCGAACC+GGG + chr7_3:12661112-12661131 None:intergenic 60.0%
CCGTGCTCAGCACATGTTGC+TGG - chr7_3:12662276-12662295 Msa1093190:intron 60.0%
! AGCTGGTGGATGCCCGTCTT+TGG - chr7_3:12665074-12665093 Msa1093190:intron 60.0%
CTGCTTCCAGCCCTGTTGGA+TGG - chr7_3:12665151-12665170 Msa1093190:intron 60.0%
CTTCGCCTTCGGCTAGAGCC+CGG - chr7_3:12661091-12661110 Msa1093190:intron 65.0%
CCTTCGGCTAGAGCCCGGTT+CGG - chr7_3:12661096-12661115 Msa1093190:intron 65.0%
! CCGAACCGGGCTCTAGCCGA+AGG + chr7_3:12661099-12661118 None:intergenic 70.0%
!! TCGGCTAGAGCCCGGTTCGG+TGG - chr7_3:12661099-12661118 Msa1093190:intron 70.0%
!! GCTAGAGCCCGGTTCGGTGG+TGG - chr7_3:12661102-12661121 Msa1093190:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 12660713 12666763 12660713 ID=Msa1093190;Name=Msa1093190
chr7_3 mRNA 12660713 12666763 12660713 ID=Msa1093190-mRNA-1;Parent=Msa1093190;Name=Msa1093190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=312|1|1|1|0.77|0.6|10|384|333
chr7_3 exon 12660713 12661049 12660713 ID=Msa1093190-mRNA-1:exon:2978;Parent=Msa1093190-mRNA-1
chr7_3 exon 12662009 12662197 12662009 ID=Msa1093190-mRNA-1:exon:2977;Parent=Msa1093190-mRNA-1
chr7_3 exon 12662295 12662428 12662295 ID=Msa1093190-mRNA-1:exon:2976;Parent=Msa1093190-mRNA-1
chr7_3 exon 12662537 12662646 12662537 ID=Msa1093190-mRNA-1:exon:2975;Parent=Msa1093190-mRNA-1
chr7_3 exon 12663170 12663266 12663170 ID=Msa1093190-mRNA-1:exon:2974;Parent=Msa1093190-mRNA-1
chr7_3 exon 12663528 12663707 12663528 ID=Msa1093190-mRNA-1:exon:2973;Parent=Msa1093190-mRNA-1
chr7_3 exon 12664341 12664408 12664341 ID=Msa1093190-mRNA-1:exon:2972;Parent=Msa1093190-mRNA-1
chr7_3 exon 12665818 12665875 12665818 ID=Msa1093190-mRNA-1:exon:2971;Parent=Msa1093190-mRNA-1
chr7_3 exon 12666219 12666659 12666219 ID=Msa1093190-mRNA-1:exon:2970;Parent=Msa1093190-mRNA-1
chr7_3 exon 12666680 12666763 12666680 ID=Msa1093190-mRNA-1:exon:2969;Parent=Msa1093190-mRNA-1
chr7_3 five_prime_UTR 12666680 12666763 12666680 ID=Msa1093190-mRNA-1:five_prime_utr;Parent=Msa1093190-mRNA-1
chr7_3 five_prime_UTR 12666432 12666659 12666432 ID=Msa1093190-mRNA-1:five_prime_utr;Parent=Msa1093190-mRNA-1
chr7_3 CDS 12666219 12666431 12666219 ID=Msa1093190-mRNA-1:cds;Parent=Msa1093190-mRNA-1
chr7_3 CDS 12665818 12665875 12665818 ID=Msa1093190-mRNA-1:cds;Parent=Msa1093190-mRNA-1
chr7_3 CDS 12664341 12664408 12664341 ID=Msa1093190-mRNA-1:cds;Parent=Msa1093190-mRNA-1
chr7_3 CDS 12663528 12663707 12663528 ID=Msa1093190-mRNA-1:cds;Parent=Msa1093190-mRNA-1
chr7_3 CDS 12663170 12663266 12663170 ID=Msa1093190-mRNA-1:cds;Parent=Msa1093190-mRNA-1
chr7_3 CDS 12662537 12662646 12662537 ID=Msa1093190-mRNA-1:cds;Parent=Msa1093190-mRNA-1
chr7_3 CDS 12662295 12662428 12662295 ID=Msa1093190-mRNA-1:cds;Parent=Msa1093190-mRNA-1
chr7_3 CDS 12662056 12662197 12662056 ID=Msa1093190-mRNA-1:cds;Parent=Msa1093190-mRNA-1
chr7_3 three_prime_UTR 12662009 12662055 12662009 ID=Msa1093190-mRNA-1:three_prime_utr;Parent=Msa1093190-mRNA-1
chr7_3 three_prime_UTR 12660713 12661049 12660713 ID=Msa1093190-mRNA-1:three_prime_utr;Parent=Msa1093190-mRNA-1
Gene Sequence

>Msa1093190

ATGGCTTCCTCCGTTTCTTTCTTTTCTCAGCCATTCGCTTTCCTTGCTTCGCCTTCGGCTAGAGCCCGGTTCGGTGGTGGCAGTTCAAAGATCCGGTCAATTCGGGTTCAGAATAATCACAAACCAGCTGAATTAACTGTTTCTAGACCTTCTGCTGCTTTAGCCTTTCGTGACCTTGATGCTGATGATTTTCGTCACCCTGTTGATAAAGAGAATACGTTGATGCTGAGAGCGATTCCAGGATTGAAAGAAGTGGGAAAAGCTCTTCTAGGAACTGTAACAGAGCAGGTCATGCTCCTTGAGAACATAGGGACATCCGTCCTTGTCTCCAAAAATCAGCTTTCTGATCTTCACAACTTAATGGCGGAAGCTGCAGAAATATTAAATGTCAATGCCCCTGATCTATATGTTCGTCAAAGTCCTGTGCCAAATGCATATACATTAGCTATAAGTGGTAAACAGCCATTTGTCGTTATTCATACTAGCCTAGTGGAGCTCCTGACAAGAGCTGAATTGCAGGCTGTTTTGGCTCATGAGTTGGGTCACCTAAAATGTGATCATGGTGTGTGGCTTACATATGCAAATATTCTAACTCTTGGAGCCTATACTGTACCTGGTATTGGAGGTTTGATAGCTCAGGCTCTGGAAGAGCAGATATTCCGCTGGCTTCGAGCAGCTGAATTAACTTGTGATCGTGCAGCTCTTCTTGTTGCTCAAGACCCTAGGGTTGTCATCTCTGTCCTCATGAAATTAGCTGGTGGATGCCCGTCTTTGGCTGATCAACTAAATGTCGATGCATTCCTGGAGCAAGCTCGCTCTTATGAAAAAGCTGCTTCCAGCCCTGTTGGATGGTACATAAGGAATGCTCAAACAAGCCAACTTTCGCATCCTCTGCCTGTTCTACGTGCTAGTGAAATTGATGAATGGTCAAGAAGTTCAGCTTATAAATCTATTTTGAAACGTGGAATACCTATCCGATCACACCAACAGCAAAGATTCTAG

Protein sequence

>Msa1093190

MASSVSFFSQPFAFLASPSARARFGGGSSKIRSIRVQNNHKPAELTVSRPSAALAFRDLDADDFRHPVDKENTLMLRAIPGLKEVGKALLGTVTEQVMLLENIGTSVLVSKNQLSDLHNLMAEAAEILNVNAPDLYVRQSPVPNAYTLAISGKQPFVVIHTSLVELLTRAELQAVLAHELGHLKCDHGVWLTYANILTLGAYTVPGIGGLIAQALEEQIFRWLRAAELTCDRAALLVAQDPRVVISVLMKLAGGCPSLADQLNVDAFLEQARSYEKAASSPVGWYIRNAQTSQLSHPLPVLRASEIDEWSRSSAYKSILKRGIPIRSHQQQRF*