AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0024500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024500 MtrunA17_Chr1g0178631 95.224 335 16 0 1 335 1 335 0.0 590
Msa0024500 MtrunA17_Chr3g0077631 35.238 315 161 8 31 334 37 319 2.37e-49 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0024500 AT5G03880.1 72.069 290 81 0 45 334 49 338 1.18e-160 452
Msa0024500 AT4G10000.1 42.254 213 115 3 127 334 119 328 3.56e-52 176
Msa0024500 AT4G10000.2 42.254 213 115 3 127 334 119 328 3.56e-52 176

Find 102 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATGCAAATTCTGTTTC+TGG 0.144741 1_1:+46911139 None:intergenic
AGACGAAATAATTAAGTATT+TGG 0.152096 1_1:-46908191 Msa0024500:CDS
TACATCGCAACGCCAGTATT+TGG 0.158890 1_1:+46908220 None:intergenic
CTCTTTCTCATTTGTTTCTA+AGG 0.160569 1_1:-46909861 Msa0024500:CDS
CAATCGAAACAAGATATTTA+TGG 0.161850 1_1:-46911479 Msa0024500:five_prime_UTR
CACCGAAGCCACTTAAATTA+TGG 0.168936 1_1:-46907365 Msa0024500:CDS
CGAAAATTCGGGCCGTTTCT+TGG 0.227164 1_1:+46908582 None:intergenic
ATTTAAATTGAGTATTAATT+AGG 0.227247 1_1:-46906419 Msa0024500:three_prime_UTR
TAGAGAAATAGTTGCTGTTT+TGG 0.248195 1_1:-46908631 Msa0024500:CDS
GACCATACCTTTCGACAAAA+TGG 0.252507 1_1:+46908777 None:intergenic
GACAAGACTCTTGAGATTCT+TGG 0.268285 1_1:-46910999 Msa0024500:CDS
TGATATAGAATATTTCGTTT+TGG 0.299080 1_1:+46906809 None:intergenic
AAGTATTTGGTTGGAACATA+TGG 0.302490 1_1:-46908178 Msa0024500:intron
TTTGTTTGGGGAAATGGTTT+TGG 0.305124 1_1:+46911333 None:intergenic
TTGCTCTTTCGCTTTGCTAC+TGG 0.307870 1_1:-46910963 Msa0024500:CDS
TGGTTCACAGGTACCTTTCT+TGG 0.308769 1_1:-46906668 Msa0024500:intron
ACAACCTTCGCACGAAAATT+CGG 0.315861 1_1:+46908570 None:intergenic
TTTCTCAATTCTCAGTTCAT+AGG 0.325348 1_1:-46911193 Msa0024500:CDS
GATCTTATAGCAAAGCGTTT+AGG 0.329835 1_1:+46911023 None:intergenic
ATAGCAAAGCGTTTAGGTTC+AGG 0.338103 1_1:+46911029 None:intergenic
AACATTTCTACACCAGTGTT+TGG 0.342818 1_1:+46906640 None:intergenic
ACCGAAGCCACTTAAATTAT+GGG 0.347189 1_1:-46907364 Msa0024500:CDS
GTTTCCCCACGTTTATTTGT+TGG 0.371016 1_1:+46911561 None:intergenic
GAAAATTCGGGCCGTTTCTT+GGG 0.373516 1_1:+46908583 None:intergenic
AATATTCTATATCAGAAAAC+TGG 0.378479 1_1:-46906800 Msa0024500:CDS
CATAAATATCTTGTTTCGAT+TGG 0.380132 1_1:+46911480 None:intergenic
TCAGAAAACTGGACATTTCC+AGG 0.380253 1_1:-46906789 Msa0024500:intron
TTCAAAGGCAGTATAGTTGA+TGG 0.386470 1_1:+46906236 None:intergenic
TTTGTTCTGGAAAATGAAAC+AGG 0.388136 1_1:+46911170 None:intergenic
ACATCGCAACGCCAGTATTT+GGG 0.405529 1_1:+46908221 None:intergenic
AGTTTAAAAGCATATTCATT+TGG 0.406017 1_1:+46909827 None:intergenic
TTCAAATTCATAGATCTCAA+TGG 0.411901 1_1:+46908959 None:intergenic
ACGTGAAGTACTTGTGGAAT+TGG 0.413589 1_1:-46906991 Msa0024500:CDS
GAAATAATTAAGTATTTGGT+TGG 0.416181 1_1:-46908187 Msa0024500:CDS
CAACCTTCGCACGAAAATTC+GGG 0.424868 1_1:+46908571 None:intergenic
GCCCATAATTTAAGTGGCTT+CGG 0.425263 1_1:+46907363 None:intergenic
GGAGACAATCTTACCATGTA+AGG 0.426269 1_1:+46908522 None:intergenic
TAGATCTCAATGGGCTTCTC+TGG 0.426617 1_1:+46908969 None:intergenic
CGGTTAGTCAGCAACGGTAT+TGG 0.428419 1_1:+46911372 None:intergenic
AGGCAAAGTGGTTGATCTAT+TGG 0.431916 1_1:+46911404 None:intergenic
TCAAATTCATAGATCTCAAT+GGG 0.434170 1_1:+46908960 None:intergenic
ACTTAAATTATGGGCTTATG+AGG 0.436645 1_1:-46907355 Msa0024500:intron
AATCCTAGTGATAAAGTAAG+AGG 0.441414 1_1:+46907692 None:intergenic
CTAATGCAAATTCTGTTTCT+GGG 0.441537 1_1:+46911140 None:intergenic
GTAAAAGAAACATCAAAGAT+AGG 0.441714 1_1:-46908999 Msa0024500:CDS
TTCTATCCTTGCCCAAGAAA+CGG 0.451827 1_1:-46908594 Msa0024500:CDS
TCCAAGGTAATGACCATGGC+TGG 0.452936 1_1:-46911233 Msa0024500:exon
GTGGTTGATCTATTGGCTCT+TGG 0.456545 1_1:+46911411 None:intergenic
TTAAAAGCATATTCATTTGG+TGG 0.458779 1_1:+46909830 None:intergenic
TCATAAGCCCATAATTTAAG+TGG 0.458921 1_1:+46907357 None:intergenic
TCATTGTTTGTTGTCCTACA+AGG 0.460814 1_1:-46906259 Msa0024500:three_prime_UTR
AAATATCTTGTTTCGATTGG+AGG 0.461959 1_1:+46911483 None:intergenic
CGTGCGAAGGTTGTTGAGAT+GGG 0.462625 1_1:-46908561 Msa0024500:CDS
ACTTGCGGTCTTGCTATGCT+TGG 0.464063 1_1:-46907562 Msa0024500:CDS
AGTATAGTTGATGGCCTTGT+AGG 0.472077 1_1:+46906245 None:intergenic
TAGCAAAGCGTTTAGGTTCA+GGG 0.474563 1_1:+46911030 None:intergenic
TGTTATGTCTGTCTCTGTCT+TGG 0.477532 1_1:-46906464 Msa0024500:three_prime_UTR
GTAATGACCATGGCTGGAAC+AGG 0.477850 1_1:-46911227 Msa0024500:CDS
TCGTGCGAAGGTTGTTGAGA+TGG 0.480686 1_1:-46908562 Msa0024500:CDS
TAAAGTTACACAATGGTTTG+AGG 0.484867 1_1:-46906336 Msa0024500:three_prime_UTR
AGCTTAAAAGTTAAATCTGT+GGG 0.489052 1_1:-46906313 Msa0024500:three_prime_UTR
AATATCTTGTTTCGATTGGA+GGG 0.489701 1_1:+46911484 None:intergenic
GTGTTTGGATCTTCCAAGAA+AGG 0.490977 1_1:+46906655 None:intergenic
TTCGGGCCGTTTCTTGGGCA+AGG 0.492960 1_1:+46908588 None:intergenic
AGCAAAGCGTTTAGGTTCAG+GGG 0.498149 1_1:+46911031 None:intergenic
TTGGTGTTGCTTAACTGACT+TGG 0.498343 1_1:+46911430 None:intergenic
TCCAGCCATGGTCATTACCT+TGG 0.498674 1_1:+46911232 None:intergenic
CATGGTCATTACCTTGGAAA+AGG 0.508029 1_1:+46911238 None:intergenic
GGCTTCGGTGGTAACTTCGC+TGG 0.508413 1_1:+46907378 None:intergenic
TAAAACACAGTTCCCTTACA+TGG 0.513518 1_1:-46908535 Msa0024500:intron
AGTAGCAAAGCGAAAGAGCA+AGG 0.520076 1_1:+46910965 None:intergenic
ATTCCTCTTACTTTATCACT+AGG 0.527663 1_1:-46907695 Msa0024500:CDS
TTGGTGGTAATTTGTTTGGA+CGG 0.533505 1_1:+46911352 None:intergenic
AGATGTTTCTGTTTCTGACA+TGG 0.537859 1_1:+46911115 None:intergenic
TTGAGATCTATGAATTTGAA+AGG 0.546792 1_1:-46908956 Msa0024500:intron
CAGAGTTCCTGTTCCAGCCA+TGG 0.549073 1_1:+46911220 None:intergenic
AATCGTACGTGAAGTACTTG+TGG 0.549531 1_1:-46906997 Msa0024500:CDS
AAAATGATATTGACATGCAA+AGG 0.556582 1_1:+46906563 None:intergenic
AAGGATAGAAAAGAATATCA+AGG 0.558191 1_1:+46908607 None:intergenic
TCAGCAACGGTATTGGAAAG+AGG 0.561051 1_1:+46911379 None:intergenic
CATAATTTAAGTGGCTTCGG+TGG 0.561588 1_1:+46907366 None:intergenic
CAAAGCGAAAGAGCAAGGGA+AGG 0.562207 1_1:+46910970 None:intergenic
TTTCATTGTAGTTGTGCTAG+GGG 0.574387 1_1:-46906836 Msa0024500:intron
TGGAAAGAGGGAAGGCAAAG+TGG 0.575219 1_1:+46911392 None:intergenic
GAGCTTAAAAGTTAAATCTG+TGG 0.576311 1_1:-46906314 Msa0024500:three_prime_UTR
CAGCAACGGTATTGGAAAGA+GGG 0.580571 1_1:+46911380 None:intergenic
TGTTGATGATGAAGTTGAAG+TGG 0.581369 1_1:+46911088 None:intergenic
AAAGCGAAAGAGCAAGGGAA+GGG 0.581925 1_1:+46910971 None:intergenic
ATATCTTGTTTCGATTGGAG+GGG 0.588733 1_1:+46911485 None:intergenic
TTTGGACGGTTAGTCAGCAA+CGG 0.602059 1_1:+46911366 None:intergenic
GTAGCAAAGCGAAAGAGCAA+GGG 0.611002 1_1:+46910966 None:intergenic
TTCTTGGAAGATCCAAACAC+TGG 0.612315 1_1:-46906652 Msa0024500:CDS
ACTTACTTGACAAGCAAATG+TGG 0.620078 1_1:+46906963 None:intergenic
AACGGTATTGGAAAGAGGGA+AGG 0.621072 1_1:+46911384 None:intergenic
GAGACAATCTTACCATGTAA+GGG 0.623184 1_1:+46908523 None:intergenic
GCAAAGCGTTTAGGTTCAGG+GGG 0.639513 1_1:+46911032 None:intergenic
TATGCTTGGTCGTATTACAA+AGG 0.643130 1_1:-46907548 Msa0024500:intron
GCTAACCAACAAATAAACGT+GGG 0.652353 1_1:-46911566 Msa0024500:five_prime_UTR
AGCTAACCAACAAATAAACG+TGG 0.654549 1_1:-46911567 Msa0024500:five_prime_UTR
TCAACAATAAAGTTACACAA+TGG 0.664926 1_1:-46906343 Msa0024500:three_prime_UTR
GCGAAGGTTGTTGAGATGGG+TGG 0.681372 1_1:-46908558 Msa0024500:CDS
CTAACCAACAAATAAACGTG+GGG 0.710173 1_1:-46911565 Msa0024500:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATTGAGTATTAATT+AGG - chr1_1:46911375-46911394 Msa0024500:five_prime_UTR 10.0%
!!! TTTTTAAGGTTTTTTTGTTT+GGG + chr1_1:46906477-46906496 None:intergenic 15.0%
!! ATAACAATTGAACAAAATTA+TGG + chr1_1:46907151-46907170 None:intergenic 15.0%
!!! TTTTATTTTTGTTAAGAAAG+TGG - chr1_1:46907665-46907684 Msa0024500:intron 15.0%
!!! ATTATTGATTCATATGAAAA+TGG - chr1_1:46907759-46907778 Msa0024500:intron 15.0%
!!! AATTTTAGTACTTATGTTAA+TGG - chr1_1:46908064-46908083 Msa0024500:intron 15.0%
!! AAAATCCAAATTGTATATAA+CGG + chr1_1:46908639-46908658 None:intergenic 15.0%
!!! AATAACAATTTTCTTGTTTT+AGG - chr1_1:46909546-46909565 Msa0024500:intron 15.0%
!!! TTCAGATATATCTTTTTTAT+TGG - chr1_1:46909647-46909666 Msa0024500:intron 15.0%
!! TATACATTAATTTCAATTTG+TGG - chr1_1:46910314-46910333 Msa0024500:intron 15.0%
!! TATAACTTATAATCTAGTAA+TGG + chr1_1:46910522-46910541 None:intergenic 15.0%
!!! TTTTAAGGTTTTTTTGTTTG+GGG + chr1_1:46906476-46906495 None:intergenic 20.0%
!!! GTTTTTAAGGTTTTTTTGTT+TGG + chr1_1:46906478-46906497 None:intergenic 20.0%
!! TATTTACAATAAGAAGAGAA+TGG + chr1_1:46906890-46906909 None:intergenic 20.0%
!!! TTTTTTTGTTAATGTGTCTA+CGG - chr1_1:46906966-46906985 Msa0024500:intron 20.0%
!!! ACTTATAATTGTTTTGAATG+AGG - chr1_1:46907055-46907074 Msa0024500:intron 20.0%
!!! AAGTTTTTTTTTTGGAAACT+TGG + chr1_1:46907424-46907443 None:intergenic 20.0%
!!! TTTGCATATATTTTCTTTCA+TGG + chr1_1:46907550-46907569 None:intergenic 20.0%
!!! AGTTTAAAAGCATATTCATT+TGG + chr1_1:46907970-46907989 None:intergenic 20.0%
!! ACTTCTATTGTATGTTAATT+AGG - chr1_1:46908161-46908180 Msa0024500:intron 20.0%
!! TTGAAAATACTGAAAATTGA+TGG - chr1_1:46908524-46908543 Msa0024500:intron 20.0%
!! AAATGAAAAATGAAATACAG+AGG + chr1_1:46908720-46908739 None:intergenic 20.0%
!! TACAAAAGATAAATATTGAG+CGG + chr1_1:46908877-46908896 None:intergenic 20.0%
!! GTAATGTTACATTAACAATA+TGG - chr1_1:46908894-46908913 Msa0024500:intron 20.0%
!! CTATTCTTTAATCTTCATAA+TGG + chr1_1:46908937-46908956 None:intergenic 20.0%
!!! TTGTTTTGTTGATTTTTTTG+AGG + chr1_1:46909296-46909315 None:intergenic 20.0%
!! AAAAATCAACAAAACAAAGT+TGG - chr1_1:46909299-46909318 Msa0024500:intron 20.0%
!!! AGTTTCTTGTTATGATTTTT+TGG - chr1_1:46909323-46909342 Msa0024500:intron 20.0%
!!! GTTTCTTGTTATGATTTTTT+GGG - chr1_1:46909324-46909343 Msa0024500:intron 20.0%
!! AATATTAAATAACCATCACA+AGG + chr1_1:46909508-46909527 None:intergenic 20.0%
!! TGTGATGGTTATTTAATATT+TGG - chr1_1:46909508-46909527 Msa0024500:intron 20.0%
!! AGACGAAATAATTAAGTATT+TGG - chr1_1:46909603-46909622 Msa0024500:intron 20.0%
!! GAAATAATTAAGTATTTGGT+TGG - chr1_1:46909607-46909626 Msa0024500:intron 20.0%
!!! ATACTCAATTCTGAAAAATA+TGG + chr1_1:46909875-46909894 None:intergenic 20.0%
!!! TTCATTGTTTCTAAAATTTC+AGG - chr1_1:46910379-46910398 Msa0024500:intron 20.0%
!!! TCATTGTTTCTAAAATTTCA+GGG - chr1_1:46910380-46910399 Msa0024500:intron 20.0%
!! CTAGATTATAAGTTATAGAT+TGG - chr1_1:46910525-46910544 Msa0024500:intron 20.0%
!!! ATTTTACATACTTGAAAACA+TGG - chr1_1:46910590-46910609 Msa0024500:intron 20.0%
!! ACTAAACTAAGAAATACATA+TGG + chr1_1:46910875-46910894 None:intergenic 20.0%
!!! ATTTCTTAGTTTAGTCTTAT+TGG - chr1_1:46910880-46910899 Msa0024500:intron 20.0%
!!! GATATAGAATATTTCGTTTT+GGG + chr1_1:46910987-46911006 None:intergenic 20.0%
!!! TGATATAGAATATTTCGTTT+TGG + chr1_1:46910988-46911007 None:intergenic 20.0%
!! AATATTCTATATCAGAAAAC+TGG - chr1_1:46910994-46911013 Msa0024500:CDS 20.0%
!! ATGTGTATATTTGCATAAAA+TGG + chr1_1:46911044-46911063 None:intergenic 20.0%
!!! CTCAATTTAAATTTTACAAG+AGG + chr1_1:46911367-46911386 None:intergenic 20.0%
!! CATAAATATCTTGTTTCGAT+TGG + chr1_1:46906317-46906336 None:intergenic 25.0%
! CAATCGAAACAAGATATTTA+TGG - chr1_1:46906315-46906334 Msa0024500:three_prime_UTR 25.0%
!!! AGTTTTTGTGTGTGTTTTTA+AGG + chr1_1:46906491-46906510 None:intergenic 25.0%
! ATAAGAAGAGAATGGAAATT+AGG + chr1_1:46906882-46906901 None:intergenic 25.0%
!!! TTTTTTGTTAATGTGTCTAC+GGG - chr1_1:46906967-46906986 Msa0024500:intron 25.0%
!!! ATTGTTTTGAATGAGGTATT+TGG - chr1_1:46907062-46907081 Msa0024500:intron 25.0%
! ATGAGTAGTATCATTATCAA+TGG + chr1_1:46907181-46907200 None:intergenic 25.0%
!! TGAAATTGTTAGTCTAACAA+AGG + chr1_1:46907613-46907632 None:intergenic 25.0%
! TAGATAGCTCAAAAATAAGT+TGG + chr1_1:46907637-46907656 None:intergenic 25.0%
! AAAAGAATTAAATTTCTGCC+AGG + chr1_1:46907884-46907903 None:intergenic 25.0%
!! TTAAAAGCATATTCATTTGG+TGG + chr1_1:46907967-46907986 None:intergenic 25.0%
!! GAATATGCTTTTAAACTTTC+TGG - chr1_1:46907973-46907992 Msa0024500:intron 25.0%
! AACATACAATAGAAGTGATA+AGG + chr1_1:46908157-46908176 None:intergenic 25.0%
!! TTAACAACTGTTGCTTATTA+TGG - chr1_1:46908267-46908286 Msa0024500:intron 25.0%
! TAATGCAAAAAGATAACCAA+AGG + chr1_1:46908307-46908326 None:intergenic 25.0%
! AGTTTCCAAATGATATTACT+AGG - chr1_1:46908469-46908488 Msa0024500:intron 25.0%
! AAAGCAGAAAGTGATTAAAA+TGG + chr1_1:46908506-46908525 None:intergenic 25.0%
!! AATACTGAAAATTGATGGTT+TGG - chr1_1:46908529-46908548 Msa0024500:intron 25.0%
! ATTCTCCGTTATATACAATT+TGG - chr1_1:46908631-46908650 Msa0024500:CDS 25.0%
! GTAAAAGAAACATCAAAGAT+AGG - chr1_1:46908795-46908814 Msa0024500:intron 25.0%
! TCAAATTCATAGATCTCAAT+GGG + chr1_1:46908837-46908856 None:intergenic 25.0%
! TTCAAATTCATAGATCTCAA+TGG + chr1_1:46908838-46908857 None:intergenic 25.0%
! TTGAGATCTATGAATTTGAA+AGG - chr1_1:46908838-46908857 Msa0024500:intron 25.0%
! ACAAAAGATAAATATTGAGC+GGG + chr1_1:46908876-46908895 None:intergenic 25.0%
! TTCTTTAATAATGTTCTTCG+TGG - chr1_1:46908979-46908998 Msa0024500:CDS 25.0%
!!! GTTTAATATTTTGACTGTAC+AGG - chr1_1:46909139-46909158 Msa0024500:intron 25.0%
! AAGGATAGAAAAGAATATCA+AGG + chr1_1:46909190-46909209 None:intergenic 25.0%
! ATGAATTCATAAACAACAAC+CGG + chr1_1:46909418-46909437 None:intergenic 25.0%
!!! ATAAGCTCTATTTAGCTTTT+AGG - chr1_1:46909774-46909793 Msa0024500:intron 25.0%
! TGGATGTTAATATCTTATCT+CGG + chr1_1:46909855-46909874 None:intergenic 25.0%
!!! GTATTTTTGTCACAATGTTA+TGG + chr1_1:46909958-46909977 None:intergenic 25.0%
! ATAGCATTAGTAATCCTTAT+AGG - chr1_1:46909988-46910007 Msa0024500:intron 25.0%
!!! AGTAATTTCTAGAACCTATA+AGG + chr1_1:46910005-46910024 None:intergenic 25.0%
!!! TTATAGGTTCTAGAAATTAC+TGG - chr1_1:46910004-46910023 Msa0024500:intron 25.0%
!! TTTATCACTAGGATTTTTGA+CGG - chr1_1:46910110-46910129 Msa0024500:intron 25.0%
!!! ATTAGTTTTTATCACCAGAA+AGG - chr1_1:46910154-46910173 Msa0024500:intron 25.0%
!! GAATTTGTTCATTAAGCATT+AGG + chr1_1:46910492-46910511 None:intergenic 25.0%
! ACTTATAATCTAGTAATGGT+TGG + chr1_1:46910518-46910537 None:intergenic 25.0%
! ATTACAAAGTGGTTATATCA+AGG - chr1_1:46910680-46910699 Msa0024500:intron 25.0%
!! GTTATATCAAGGCTTTTTAT+AGG - chr1_1:46910691-46910710 Msa0024500:intron 25.0%
! ATCAATGATACGATTTATTC+AGG - chr1_1:46910758-46910777 Msa0024500:intron 25.0%
! TCAATGATACGATTTATTCA+GGG - chr1_1:46910759-46910778 Msa0024500:intron 25.0%
! AATGGAATCAATAAAATACC+TGG + chr1_1:46911026-46911045 None:intergenic 25.0%
! TTAATTCCGATGGTTAATTA+TGG - chr1_1:46911106-46911125 Msa0024500:CDS 25.0%
! AAAATGATATTGACATGCAA+AGG + chr1_1:46911234-46911253 None:intergenic 25.0%
!!! TTCAGTAATTGATTTTTGTG+AGG - chr1_1:46911280-46911299 Msa0024500:five_prime_UTR 25.0%
!! TTTTACAAGAGGAAAAATGA+AGG + chr1_1:46911356-46911375 None:intergenic 25.0%
! AGAAAAAAATGATCAACTAG+AGG - chr1_1:46911417-46911436 Msa0024500:five_prime_UTR 25.0%
! TCAACAATAAAGTTACACAA+TGG - chr1_1:46911451-46911470 Msa0024500:five_prime_UTR 25.0%
! AGCTTAAAAGTTAAATCTGT+GGG - chr1_1:46911481-46911500 Msa0024500:five_prime_UTR 25.0%
! AATATCTTGTTTCGATTGGA+GGG + chr1_1:46906313-46906332 None:intergenic 30.0%
! AAATATCTTGTTTCGATTGG+AGG + chr1_1:46906314-46906333 None:intergenic 30.0%
!!! GAACAGTTTCTTTTGTTGTT+GGG + chr1_1:46906537-46906556 None:intergenic 30.0%
TTTCTCAATTCTCAGTTCAT+AGG - chr1_1:46906601-46906620 Msa0024500:CDS 30.0%
!! TTTGTTCTGGAAAATGAAAC+AGG + chr1_1:46906627-46906646 None:intergenic 30.0%
! CTAATGCAAATTCTGTTTCT+GGG + chr1_1:46906657-46906676 None:intergenic 30.0%
TCTAATGCAAATTCTGTTTC+TGG + chr1_1:46906658-46906677 None:intergenic 30.0%
GAGCATATAATGTGAAGATA+AGG - chr1_1:46907486-46907505 Msa0024500:intron 30.0%
TATAATGTGAAGATAAGGCA+TGG - chr1_1:46907491-46907510 Msa0024500:intron 30.0%
ATAATGTGAAGATAAGGCAT+GGG - chr1_1:46907492-46907511 Msa0024500:intron 30.0%
!! CTCTTTCTCATTTGTTTCTA+AGG - chr1_1:46907933-46907952 Msa0024500:intron 30.0%
TGAGCGTCAAAATAAAAGAA+CGG + chr1_1:46908007-46908026 None:intergenic 30.0%
!!! TTCTTTTATTTTGACGCTCA+TGG - chr1_1:46908007-46908026 Msa0024500:intron 30.0%
! ACATCCAAAGAGATTTTCTT+TGG + chr1_1:46908403-46908422 None:intergenic 30.0%
! ATCTCTTTGGATGTCTTATT+TGG - chr1_1:46908409-46908428 Msa0024500:intron 30.0%
CTCTTCCTAGTAATATCATT+TGG + chr1_1:46908477-46908496 None:intergenic 30.0%
CAAATGATATTACTAGGAAG+AGG - chr1_1:46908475-46908494 Msa0024500:intron 30.0%
! TCTGTGTAATAGTATTTCTG+TGG - chr1_1:46908584-46908603 Msa0024500:CDS 30.0%
AAAATGAAATACAGAGGAAG+CGG + chr1_1:46908714-46908733 None:intergenic 30.0%
CCTTGTTAACATTAGTAATG+CGG - chr1_1:46908758-46908777 Msa0024500:intron 30.0%
TTTAATCTTCATAATGGCTG+TGG + chr1_1:46908931-46908950 None:intergenic 30.0%
TAATAATGTTCTTCGTGGAT+CGG - chr1_1:46908984-46909003 Msa0024500:CDS 30.0%
!! CAAACATTCTTTTTGTTGTG+TGG - chr1_1:46909117-46909136 Msa0024500:intron 30.0%
!!! TAGAGAAATAGTTGCTGTTT+TGG - chr1_1:46909163-46909182 Msa0024500:intron 30.0%
ACTAAGATAAACTGCTTCAA+TGG - chr1_1:46909375-46909394 Msa0024500:intron 30.0%
GGAATTAATGCAAAACTATC+CGG - chr1_1:46909396-46909415 Msa0024500:intron 30.0%
AAGTATTTGGTTGGAACATA+TGG - chr1_1:46909616-46909635 Msa0024500:intron 30.0%
!! TCTTACAAACCGATTTTGTA+GGG + chr1_1:46909735-46909754 None:intergenic 30.0%
!! ATCTTACAAACCGATTTTGT+AGG + chr1_1:46909736-46909755 None:intergenic 30.0%
! GAGTATTTTACCACATACAA+CGG - chr1_1:46909889-46909908 Msa0024500:intron 30.0%
! AGTATTTTACCACATACAAC+GGG - chr1_1:46909890-46909909 Msa0024500:intron 30.0%
! ACATTCATTATCTGTTTTGC+AGG - chr1_1:46910066-46910085 Msa0024500:intron 30.0%
ATTCCTCTTACTTTATCACT+AGG - chr1_1:46910099-46910118 Msa0024500:intron 30.0%
AATCCTAGTGATAAAGTAAG+AGG + chr1_1:46910105-46910124 None:intergenic 30.0%
! AAACTAATGATAGTGATGTC+AGG + chr1_1:46910142-46910161 None:intergenic 30.0%
! TATTTCCCTTTGCTATGTAA+TGG - chr1_1:46910281-46910300 Msa0024500:intron 30.0%
TCATAAGCCCATAATTTAAG+TGG + chr1_1:46910440-46910459 None:intergenic 30.0%
ACTTAAATTATGGGCTTATG+AGG - chr1_1:46910439-46910458 Msa0024500:intron 30.0%
!! TTAGTTTTCTCTCAATTCTC+TGG + chr1_1:46910631-46910650 None:intergenic 30.0%
TGAGTAAAGTGATTACAAAG+TGG - chr1_1:46910669-46910688 Msa0024500:intron 30.0%
! ATTTTCATTGTAGTTGTGCT+AGG - chr1_1:46910956-46910975 Msa0024500:CDS 30.0%
! TTTTCATTGTAGTTGTGCTA+GGG - chr1_1:46910957-46910976 Msa0024500:CDS 30.0%
TGTGAACCATAATTAACCAT+CGG + chr1_1:46911115-46911134 None:intergenic 30.0%
TAAAGTTACACAATGGTTTG+AGG - chr1_1:46911458-46911477 Msa0024500:five_prime_UTR 30.0%
GAGCTTAAAAGTTAAATCTG+TGG - chr1_1:46911480-46911499 Msa0024500:five_prime_UTR 30.0%
AGCTAACCAACAAATAAACG+TGG - chr1_1:46906227-46906246 Msa0024500:three_prime_UTR 35.0%
GCTAACCAACAAATAAACGT+GGG - chr1_1:46906228-46906247 Msa0024500:three_prime_UTR 35.0%
CTAACCAACAAATAAACGTG+GGG - chr1_1:46906229-46906248 Msa0024500:three_prime_UTR 35.0%
! ATATCTTGTTTCGATTGGAG+GGG + chr1_1:46906312-46906331 None:intergenic 35.0%
!! TTGGTGGTAATTTGTTTGGA+CGG + chr1_1:46906445-46906464 None:intergenic 35.0%
!!! GGTTTTGGTGGTAATTTGTT+TGG + chr1_1:46906449-46906468 None:intergenic 35.0%
! TTTGTTTGGGGAAATGGTTT+TGG + chr1_1:46906464-46906483 None:intergenic 35.0%
!!! GGTTTTTTTGTTTGGGGAAA+TGG + chr1_1:46906470-46906489 None:intergenic 35.0%
!! GGAACAGTTTCTTTTGTTGT+TGG + chr1_1:46906538-46906557 None:intergenic 35.0%
! AAGAAACTGTTCCTTTTCCA+AGG - chr1_1:46906545-46906564 Msa0024500:three_prime_UTR 35.0%
!! AGATGTTTCTGTTTCTGACA+TGG + chr1_1:46906682-46906701 None:intergenic 35.0%
!! TGTTGATGATGAAGTTGAAG+TGG + chr1_1:46906709-46906728 None:intergenic 35.0%
! GATCTTATAGCAAAGCGTTT+AGG + chr1_1:46906774-46906793 None:intergenic 35.0%
! ACGCTTTTGTGTTGTGAAAA+TGG - chr1_1:46906928-46906947 Msa0024500:intron 35.0%
GTTGTGAAAATGGAAACTCA+AGG - chr1_1:46906938-46906957 Msa0024500:intron 35.0%
! GGCACAAACTAATATTGACT+AGG + chr1_1:46907001-46907020 None:intergenic 35.0%
TAAAGTGAGTTAACCACCAA+GGG - chr1_1:46907210-46907229 Msa0024500:intron 35.0%
!! GTTTTTCTCTGGCTTCAATT+GGG - chr1_1:46907340-46907359 Msa0024500:intron 35.0%
TCACATTATATGCTCAACGT+AGG + chr1_1:46907481-46907500 None:intergenic 35.0%
AAGATAAGGCATGGGATAAA+TGG - chr1_1:46907500-46907519 Msa0024500:intron 35.0%
AATTATGTCGCATTGTCTTG+TGG + chr1_1:46907824-46907843 None:intergenic 35.0%
ATTTACTGAGATTGTTCTCC+TGG - chr1_1:46907863-46907882 Msa0024500:intron 35.0%
! TAGAAGTGATAAGGTGCTTT+GGG + chr1_1:46908148-46908167 None:intergenic 35.0%
! ATAGAAGTGATAAGGTGCTT+TGG + chr1_1:46908149-46908168 None:intergenic 35.0%
! GGAATCACTATTTTCTCCTT+TGG - chr1_1:46908288-46908307 Msa0024500:intron 35.0%
CATGTTGTCTATGCATGAAA+AGG - chr1_1:46908375-46908394 Msa0024500:intron 35.0%
GGTTCCAAAGAAAATCTCTT+TGG - chr1_1:46908396-46908415 Msa0024500:intron 35.0%
!!! GTATTTCTGTGGTTTTAGTG+TGG - chr1_1:46908595-46908614 Msa0024500:CDS 35.0%
CCGCATTACTAATGTTAACA+AGG + chr1_1:46908761-46908780 None:intergenic 35.0%
AACATTAGTAATGCGGTTTC+AGG - chr1_1:46908765-46908784 Msa0024500:intron 35.0%
AATAATGTTCTTCGTGGATC+GGG - chr1_1:46908985-46909004 Msa0024500:CDS 35.0%
!! GGTATGGTCTATTGTTTTGT+AGG - chr1_1:46909031-46909050 Msa0024500:intron 35.0%
TAAAACACAGTTCCCTTACA+TGG - chr1_1:46909259-46909278 Msa0024500:intron 35.0%
GAGACAATCTTACCATGTAA+GGG + chr1_1:46909274-46909293 None:intergenic 35.0%
TTTGGGCATCTTGTAATAGA+TGG - chr1_1:46909341-46909360 Msa0024500:intron 35.0%
TTGGGCATCTTGTAATAGAT+GGG - chr1_1:46909342-46909361 Msa0024500:intron 35.0%
AAGCAGTTTATCTTAGTGAC+TGG + chr1_1:46909372-46909391 None:intergenic 35.0%
!!! TTTTAGGTTGACCCAAATAC+TGG - chr1_1:46909562-46909581 Msa0024500:intron 35.0%
CTAACTCAACCCTACAAAAT+CGG - chr1_1:46909723-46909742 Msa0024500:intron 35.0%
!! CAAAATCGGTTTGTAAGATC+AGG - chr1_1:46909737-46909756 Msa0024500:intron 35.0%
!! GCTTTTAGGTCATATCTTCT+AGG - chr1_1:46909788-46909807 Msa0024500:intron 35.0%
! GTATTTTACCACATACAACG+GGG - chr1_1:46909891-46909910 Msa0024500:intron 35.0%
! TATTTTACCACATACAACGG+GGG - chr1_1:46909892-46909911 Msa0024500:intron 35.0%
! ATTATCTGTTTTGCAGGTGA+TGG - chr1_1:46910072-46910091 Msa0024500:intron 35.0%
TGATACAAAGTTCACCTTTC+TGG + chr1_1:46910171-46910190 None:intergenic 35.0%
TATGCTTGGTCGTATTACAA+AGG - chr1_1:46910246-46910265 Msa0024500:intron 35.0%
ACCGAAGCCACTTAAATTAT+GGG - chr1_1:46910430-46910449 Msa0024500:intron 35.0%
AAATTATGGGCTTATGAGGT+TGG - chr1_1:46910443-46910462 Msa0024500:intron 35.0%
TCATTAAGCATTAGGATGCA+TGG + chr1_1:46910484-46910503 None:intergenic 35.0%
TGATACAGTCAGTTACTTAC+TGG + chr1_1:46910742-46910761 None:intergenic 35.0%
ACTTACTTGACAAGCAAATG+TGG + chr1_1:46910834-46910853 None:intergenic 35.0%
TTTCATTGTAGTTGTGCTAG+GGG - chr1_1:46910958-46910977 Msa0024500:CDS 35.0%
ATGGATGATGTTAATTCCGA+TGG - chr1_1:46911096-46911115 Msa0024500:CDS 35.0%
GATGGTTAATTATGGTTCAC+AGG - chr1_1:46911114-46911133 Msa0024500:CDS 35.0%
AACATTTCTACACCAGTGTT+TGG + chr1_1:46911157-46911176 None:intergenic 35.0%
! TGATTTTTGTGAGGCTTATG+AGG - chr1_1:46911289-46911308 Msa0024500:five_prime_UTR 35.0%
! GATTTTTGTGAGGCTTATGA+GGG - chr1_1:46911290-46911309 Msa0024500:five_prime_UTR 35.0%
!! TCATTGTTTGTTGTCCTACA+AGG - chr1_1:46911535-46911554 Msa0024500:five_prime_UTR 35.0%
TTCAAAGGCAGTATAGTTGA+TGG + chr1_1:46911561-46911580 None:intergenic 35.0%
GTTTCCCCACGTTTATTTGT+TGG + chr1_1:46906236-46906255 None:intergenic 40.0%
!! TTGGTGTTGCTTAACTGACT+TGG + chr1_1:46906367-46906386 None:intergenic 40.0%
AGGCAAAGTGGTTGATCTAT+TGG + chr1_1:46906393-46906412 None:intergenic 40.0%
!!! CAGTTTCTTTTGTTGTTGGG+AGG + chr1_1:46906534-46906553 None:intergenic 40.0%
CATGGTCATTACCTTGGAAA+AGG + chr1_1:46906559-46906578 None:intergenic 40.0%
! CTTTTCCAAGGTAATGACCA+TGG - chr1_1:46906557-46906576 Msa0024500:three_prime_UTR 40.0%
!!! TCTGGGTAGTAGTTTTGTTC+TGG + chr1_1:46906640-46906659 None:intergenic 40.0%
! TAGCAAAGCGTTTAGGTTCA+GGG + chr1_1:46906767-46906786 None:intergenic 40.0%
! ATAGCAAAGCGTTTAGGTTC+AGG + chr1_1:46906768-46906787 None:intergenic 40.0%
GACAAGACTCTTGAGATTCT+TGG - chr1_1:46906795-46906814 Msa0024500:CDS 40.0%
! CTACTGGAGTTTTCGTTTCT+GGG - chr1_1:46906847-46906866 Msa0024500:intron 40.0%
GTAAAGTGAGTTAACCACCA+AGG - chr1_1:46907209-46907228 Msa0024500:intron 40.0%
TGACACATGAATGATCACCT+GGG + chr1_1:46907304-46907323 None:intergenic 40.0%
!! GAGAAAAACCTGGTATTGAC+TGG + chr1_1:46907329-46907348 None:intergenic 40.0%
! GTCAATACCAGGTTTTTCTC+TGG - chr1_1:46907329-46907348 Msa0024500:intron 40.0%
ATTGAAGCCAGAGAAAAACC+TGG + chr1_1:46907339-46907358 None:intergenic 40.0%
!! GGTTTTTCTCTGGCTTCAAT+TGG - chr1_1:46907339-46907358 Msa0024500:intron 40.0%
!! ATGAGAAAGAGTACCTGCAA+AGG + chr1_1:46907924-46907943 None:intergenic 40.0%
GCGTCAAAATAAAAGAACGG+AGG + chr1_1:46908004-46908023 None:intergenic 40.0%
! AGAAGTGATAAGGTGCTTTG+GGG + chr1_1:46908147-46908166 None:intergenic 40.0%
! GTCCATTTTGTCGAAAGGTA+TGG - chr1_1:46909015-46909034 Msa0024500:intron 40.0%
GACCATACCTTTCGACAAAA+TGG + chr1_1:46909020-46909039 None:intergenic 40.0%
TTCTATCCTTGCCCAAGAAA+CGG - chr1_1:46909200-46909219 Msa0024500:intron 40.0%
ACAACCTTCGCACGAAAATT+CGG + chr1_1:46909227-46909246 None:intergenic 40.0%
GGAGACAATCTTACCATGTA+AGG + chr1_1:46909275-46909294 None:intergenic 40.0%
! CTCGGACGCATGTTATTTAT+TGG + chr1_1:46909837-46909856 None:intergenic 40.0%
GAATGTCAAACACTCGCAAT+AGG + chr1_1:46910052-46910071 None:intergenic 40.0%
! TCCCTTTGCTATGTAATGGA+AGG - chr1_1:46910285-46910304 Msa0024500:intron 40.0%
CCCTTCCATTACATAGCAAA+GGG + chr1_1:46910289-46910308 None:intergenic 40.0%
! CCCTTTGCTATGTAATGGAA+GGG - chr1_1:46910286-46910305 Msa0024500:intron 40.0%
TCCCTTCCATTACATAGCAA+AGG + chr1_1:46910290-46910309 None:intergenic 40.0%
CATAATTTAAGTGGCTTCGG+TGG + chr1_1:46910431-46910450 None:intergenic 40.0%
CACCGAAGCCACTTAAATTA+TGG - chr1_1:46910429-46910448 Msa0024500:intron 40.0%
GCCCATAATTTAAGTGGCTT+CGG + chr1_1:46910434-46910453 None:intergenic 40.0%
! TCACGTACGATTTTGCAGAA+AGG + chr1_1:46910789-46910808 None:intergenic 40.0%
! AATCGTACGTGAAGTACTTG+TGG - chr1_1:46910797-46910816 Msa0024500:intron 40.0%
! ACGTGAAGTACTTGTGGAAT+TGG - chr1_1:46910803-46910822 Msa0024500:intron 40.0%
TCAGAAAACTGGACATTTCC+AGG - chr1_1:46911005-46911024 Msa0024500:CDS 40.0%
TCTTTACAAGCTTCACGACA+TGG - chr1_1:46911064-46911083 Msa0024500:CDS 40.0%
CACGACATGGTATTTGTCAA+TGG - chr1_1:46911077-46911096 Msa0024500:CDS 40.0%
GTGTTTGGATCTTCCAAGAA+AGG + chr1_1:46911142-46911161 None:intergenic 40.0%
TTCTTGGAAGATCCAAACAC+TGG - chr1_1:46911142-46911161 Msa0024500:CDS 40.0%
TGTTATGTCTGTCTCTGTCT+TGG - chr1_1:46911330-46911349 Msa0024500:five_prime_UTR 40.0%
!! AGTATAGTTGATGGCCTTGT+AGG + chr1_1:46911552-46911571 None:intergenic 40.0%
!! GTGGTTGATCTATTGGCTCT+TGG + chr1_1:46906386-46906405 None:intergenic 45.0%
! AACGGTATTGGAAAGAGGGA+AGG + chr1_1:46906413-46906432 None:intergenic 45.0%
! CAGCAACGGTATTGGAAAGA+GGG + chr1_1:46906417-46906436 None:intergenic 45.0%
! TCAGCAACGGTATTGGAAAG+AGG + chr1_1:46906418-46906437 None:intergenic 45.0%
! TTTGGACGGTTAGTCAGCAA+CGG + chr1_1:46906431-46906450 None:intergenic 45.0%
!!! GTTTGGGGAAATGGTTTTGG+TGG + chr1_1:46906461-46906480 None:intergenic 45.0%
! TCAGGGGGTTTGAAATTTGG+AGG + chr1_1:46906750-46906769 None:intergenic 45.0%
! GGTTCAGGGGGTTTGAAATT+TGG + chr1_1:46906753-46906772 None:intergenic 45.0%
! AGCAAAGCGTTTAGGTTCAG+GGG + chr1_1:46906766-46906785 None:intergenic 45.0%
AAAGCGAAAGAGCAAGGGAA+GGG + chr1_1:46906826-46906845 None:intergenic 45.0%
GTAGCAAAGCGAAAGAGCAA+GGG + chr1_1:46906831-46906850 None:intergenic 45.0%
AGTAGCAAAGCGAAAGAGCA+AGG + chr1_1:46906832-46906851 None:intergenic 45.0%
TTGCTCTTTCGCTTTGCTAC+TGG - chr1_1:46906831-46906850 Msa0024500:intron 45.0%
! GCTACTGGAGTTTTCGTTTC+TGG - chr1_1:46906846-46906865 Msa0024500:intron 45.0%
TGTGCCTTTGTGCATAGACT+TGG - chr1_1:46907015-46907034 Msa0024500:CDS 45.0%
! GCATATGGTAGTGTAGGCTT+GGG - chr1_1:46907236-46907255 Msa0024500:intron 45.0%
TTAGCAGTGTGATCCTCTCT+AGG - chr1_1:46907261-46907280 Msa0024500:intron 45.0%
TAGAACCTAACCACCTAGAG+AGG + chr1_1:46907277-46907296 None:intergenic 45.0%
ACACATGAATGATCACCTGG+GGG + chr1_1:46907302-46907321 None:intergenic 45.0%
GACACATGAATGATCACCTG+GGG + chr1_1:46907303-46907322 None:intergenic 45.0%
CTGACACATGAATGATCACC+TGG + chr1_1:46907305-46907324 None:intergenic 45.0%
CAGGTGATCATTCATGTGTC+AGG - chr1_1:46907303-46907322 Msa0024500:intron 45.0%
GTCGCATTGTCTTGTGGATA+TGG + chr1_1:46907818-46907837 None:intergenic 45.0%
!! GCTTTTTGTTGTGCCTTTGC+AGG - chr1_1:46907908-46907927 Msa0024500:intron 45.0%
GCAGGGATTGGAGAGAATAA+TGG + chr1_1:46908119-46908138 None:intergenic 45.0%
CACAACAGTGACTTAGACAG+TGG - chr1_1:46908220-46908239 Msa0024500:CDS 45.0%
! TAGATCTCAATGGGCTTCTC+TGG + chr1_1:46908828-46908847 None:intergenic 45.0%
! CAGCTGTCCATTTTGTCGAA+AGG - chr1_1:46909010-46909029 Msa0024500:CDS 45.0%
GAAAATTCGGGCCGTTTCTT+GGG + chr1_1:46909214-46909233 None:intergenic 45.0%
CAACCTTCGCACGAAAATTC+GGG + chr1_1:46909226-46909245 None:intergenic 45.0%
TTGCTGATCACACCTTGTGA+TGG - chr1_1:46909493-46909512 Msa0024500:intron 45.0%
ACATCGCAACGCCAGTATTT+GGG + chr1_1:46909576-46909595 None:intergenic 45.0%
TACATCGCAACGCCAGTATT+TGG + chr1_1:46909577-46909596 None:intergenic 45.0%
AATGATTCCCCCGTTGTATG+TGG + chr1_1:46909902-46909921 None:intergenic 45.0%
GATGCATGGTTAGCATGTTG+TGG + chr1_1:46910470-46910489 None:intergenic 45.0%
TGGTTCACAGGTACCTTTCT+TGG - chr1_1:46911126-46911145 Msa0024500:CDS 45.0%
!!! ATTTTATAAAGTTTTTTTTT+TGG + chr1_1:46907432-46907451 None:intergenic 5.0%
TGGAAAGAGGGAAGGCAAAG+TGG + chr1_1:46906405-46906424 None:intergenic 50.0%
! CGGTTAGTCAGCAACGGTAT+TGG + chr1_1:46906425-46906444 None:intergenic 50.0%
TCCAAGGTAATGACCATGGC+TGG - chr1_1:46906561-46906580 Msa0024500:three_prime_UTR 50.0%
TCCAGCCATGGTCATTACCT+TGG + chr1_1:46906565-46906584 None:intergenic 50.0%
GTAATGACCATGGCTGGAAC+AGG - chr1_1:46906567-46906586 Msa0024500:three_prime_UTR 50.0%
! GGGGGTTTGAAATTTGGAGG+AGG + chr1_1:46906747-46906766 None:intergenic 50.0%
! GCAAAGCGTTTAGGTTCAGG+GGG + chr1_1:46906765-46906784 None:intergenic 50.0%
CAAAGCGAAAGAGCAAGGGA+AGG + chr1_1:46906827-46906846 None:intergenic 50.0%
CCAGCCAAGTCTATGCACAA+AGG + chr1_1:46907022-46907041 None:intergenic 50.0%
CCTTTGTGCATAGACTTGGC+TGG - chr1_1:46907019-46907038 Msa0024500:intron 50.0%
GTGAGTTAACCACCAAGGGT+TGG - chr1_1:46907214-46907233 Msa0024500:intron 50.0%
! AACCACCAAGGGTTGGCATA+TGG - chr1_1:46907221-46907240 Msa0024500:intron 50.0%
TACCATATGCCAACCCTTGG+TGG + chr1_1:46907226-46907245 None:intergenic 50.0%
CACTACCATATGCCAACCCT+TGG + chr1_1:46907229-46907248 None:intergenic 50.0%
! GGGTTGGCATATGGTAGTGT+AGG - chr1_1:46907230-46907249 Msa0024500:intron 50.0%
! GGCATATGGTAGTGTAGGCT+TGG - chr1_1:46907235-46907254 Msa0024500:intron 50.0%
GTGATCCTCTCTAGGTGGTT+AGG - chr1_1:46907269-46907288 Msa0024500:intron 50.0%
! TGGTTAGGTTCTAATCCCCC+AGG - chr1_1:46907284-46907303 Msa0024500:intron 50.0%
TTCAATTGGGCCTCCACTAG+TGG - chr1_1:46907353-46907372 Msa0024500:intron 50.0%
!! GATTGGTTCCCCGGATTAGT+CGG - chr1_1:46907383-46907402 Msa0024500:CDS 50.0%
GAAACTTGGTATCCGACCCA+AGG + chr1_1:46907410-46907429 None:intergenic 50.0%
TTTGGGGAAGTAGCAGGGAT+TGG + chr1_1:46908131-46908150 None:intergenic 50.0%
CGAAAATTCGGGCCGTTTCT+TGG + chr1_1:46909215-46909234 None:intergenic 50.0%
TCGTGCGAAGGTTGTTGAGA+TGG - chr1_1:46909232-46909251 Msa0024500:intron 50.0%
CGTGCGAAGGTTGTTGAGAT+GGG - chr1_1:46909233-46909252 Msa0024500:intron 50.0%
! ACTTGCGGTCTTGCTATGCT+TGG - chr1_1:46910232-46910251 Msa0024500:intron 50.0%
CAGAGTTCCTGTTCCAGCCA+TGG + chr1_1:46906577-46906596 None:intergenic 55.0%
GCAGTGTGATCCTCTCTAGG+TGG - chr1_1:46907264-46907283 Msa0024500:intron 55.0%
GTGTCAGGCCAGTCAATACC+AGG - chr1_1:46907318-46907337 Msa0024500:intron 55.0%
ATCCCACTGTCCACTAGTGG+AGG + chr1_1:46907366-46907385 None:intergenic 55.0%
CCAATCCCACTGTCCACTAG+TGG + chr1_1:46907369-46907388 None:intergenic 55.0%
! CCACTAGTGGACAGTGGGAT+TGG - chr1_1:46907366-46907385 Msa0024500:CDS 55.0%
ACCCAAGGACCGACTAATCC+GGG + chr1_1:46907395-46907414 None:intergenic 55.0%
GACCCAAGGACCGACTAATC+CGG + chr1_1:46907396-46907415 None:intergenic 55.0%
!! GGATTAGTCGGTCCTTGGGT+CGG - chr1_1:46907395-46907414 Msa0024500:CDS 55.0%
!! GGTGCTTTGGGGAAGTAGCA+GGG + chr1_1:46908136-46908155 None:intergenic 55.0%
!! AGGTGCTTTGGGGAAGTAGC+AGG + chr1_1:46908137-46908156 None:intergenic 55.0%
GCGAAGGTTGTTGAGATGGG+TGG - chr1_1:46909236-46909255 Msa0024500:intron 55.0%
! GGCCTCCACTAGTGGACAGT+GGG - chr1_1:46907361-46907380 Msa0024500:CDS 60.0%
!! GGACAGTGGGATTGGTTCCC+CGG - chr1_1:46907374-46907393 Msa0024500:CDS 60.0%
!! TCCCCGGATTAGTCGGTCCT+TGG - chr1_1:46907390-46907409 Msa0024500:CDS 60.0%
CCCAAGGACCGACTAATCCG+GGG + chr1_1:46907394-46907413 None:intergenic 60.0%
!! CCCCGGATTAGTCGGTCCTT+GGG - chr1_1:46907391-46907410 Msa0024500:CDS 60.0%
TTCGGGCCGTTTCTTGGGCA+AGG + chr1_1:46909209-46909228 None:intergenic 60.0%
! CGGCCCGAATTTTCGTGCGA+AGG - chr1_1:46909220-46909239 Msa0024500:intron 60.0%
GGCTTCGGTGGTAACTTCGC+TGG + chr1_1:46910419-46910438 None:intergenic 60.0%
! GGGCCTCCACTAGTGGACAG+TGG - chr1_1:46907360-46907379 Msa0024500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 46906222 46911594 46906222 ID=Msa0024500;Name=Msa0024500
chr1_1 mRNA 46906222 46911594 46906222 ID=Msa0024500-mRNA-1;Parent=Msa0024500;Name=Msa0024500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=348|1|1|1|1|1|12|369|335
chr1_1 exon 46906222 46906680 46906222 ID=Msa0024500-mRNA-1:exon:13405;Parent=Msa0024500-mRNA-1
chr1_1 exon 46906790 46906847 46906790 ID=Msa0024500-mRNA-1:exon:13404;Parent=Msa0024500-mRNA-1
chr1_1 exon 46906969 46907036 46906969 ID=Msa0024500-mRNA-1:exon:13403;Parent=Msa0024500-mRNA-1
chr1_1 exon 46907356 46907415 46907356 ID=Msa0024500-mRNA-1:exon:13402;Parent=Msa0024500-mRNA-1
chr1_1 exon 46907549 46907590 46907549 ID=Msa0024500-mRNA-1:exon:13401;Parent=Msa0024500-mRNA-1
chr1_1 exon 46907685 46907728 46907685 ID=Msa0024500-mRNA-1:exon:13400;Parent=Msa0024500-mRNA-1
chr1_1 exon 46908179 46908248 46908179 ID=Msa0024500-mRNA-1:exon:13399;Parent=Msa0024500-mRNA-1
chr1_1 exon 46908536 46908655 46908536 ID=Msa0024500-mRNA-1:exon:13398;Parent=Msa0024500-mRNA-1
chr1_1 exon 46908785 46908803 46908785 ID=Msa0024500-mRNA-1:exon:13397;Parent=Msa0024500-mRNA-1
chr1_1 exon 46908957 46909029 46908957 ID=Msa0024500-mRNA-1:exon:13396;Parent=Msa0024500-mRNA-1
chr1_1 exon 46909822 46909886 46909822 ID=Msa0024500-mRNA-1:exon:13395;Parent=Msa0024500-mRNA-1
chr1_1 exon 46910948 46911594 46910948 ID=Msa0024500-mRNA-1:exon:13394;Parent=Msa0024500-mRNA-1
chr1_1 five_prime_UTR 46911247 46911594 46911247 ID=Msa0024500-mRNA-1:five_prime_utr;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46910948 46911246 46910948 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46909822 46909886 46909822 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46908957 46909029 46908957 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46908785 46908803 46908785 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46908536 46908655 46908536 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46908179 46908248 46908179 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46907685 46907728 46907685 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46907549 46907590 46907549 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46907356 46907415 46907356 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46906969 46907036 46906969 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46906790 46906847 46906790 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 CDS 46906591 46906680 46906591 ID=Msa0024500-mRNA-1:cds;Parent=Msa0024500-mRNA-1
chr1_1 three_prime_UTR 46906222 46906590 46906222 ID=Msa0024500-mRNA-1:three_prime_utr;Parent=Msa0024500-mRNA-1
Gene Sequence

>Msa0024500

ATGACCATGGCTGGAACAGGAACTCTGAGTTTTTCTCAATTCTCAGTTCATAGGCCTGTTTCATTTTCCAGAACAAAACTACTACCCAGAAACAGAATTTGCATTAGAGCCATGTCAGAAACAGAAACATCTTCTTCCACTTCAACTTCATCATCAACATCAGTTTCAATTACTCCTCCTCCAAATTTCAAACCCCCTGAACCTAAACGCTTTGCTATAAGATCTGACAAGACTCTTGAGATTCTTGGAGCTTCCCTTCCCTTGCTCTTTCGCTTTGCTACTGGAGTTTTCGTTTCTGGGTACTCTTTCTCATTTGTTTCTAAGGATGAAATTCCACCAAATGAATATGCTTTTAAACTTTCTGGTATTACAGTAAAAGAAACATCAAAGATAGGCGCTCGACCAGAGAAGCCCATTGAGATCTATGAATTTGAAAGCTGTCCATTTTGTCGAAAGGTTAGAGAAATAGTTGCTGTTTTGGACCTTGATATTCTTTTCTATCCTTGCCCAAGAAACGGCCCGAATTTTCGTGCGAAGGTTGTTGAGATGGGTGGTAAAACACAGTTCCCTTACATGGTTGACCCAAATACTGGCGTTGCGATGTATGAATCAGACGAAATAATTAAGTATTTGGTTGGAACATATGGTGATGGAAACATTCCTCTTACTTTATCACTAGGATTTTTGACGTCATTGACTTGCGGTCTTGCTATGCTTGGTCGTATTACAAAGGGAACATCATATACTCCAGCGAAGTTACCACCGAAGCCACTTAAATTATGGGCTTATGAGGGATCTCCTTTCTGCAAAATCGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACATTTGCTTGTCAATTGTGCTAGGGGTAGCCCAAAACGAAATATTCTATATCAGAAAACTGGACATTTCCAGGTACCTTTCTTGGAAGATCCAAACACTGGTGTAGAAATGTTTGAGAGTGCAGAAATTATAGAGTACATTAGAGCAACTTACACTCTTTAG

Protein sequence

>Msa0024500

MTMAGTGTLSFSQFSVHRPVSFSRTKLLPRNRICIRAMSETETSSSTSTSSSTSVSITPPPNFKPPEPKRFAIRSDKTLEILGASLPLLFRFATGVFVSGYSFSFVSKDEIPPNEYAFKLSGITVKETSKIGARPEKPIEIYEFESCPFCRKVREIVAVLDLDILFYPCPRNGPNFRAKVVEMGGKTQFPYMVDPNTGVAMYESDEIIKYLVGTYGDGNIPLTLSLGFLTSLTCGLAMLGRITKGTSYTPAKLPPKPLKLWAYEGSPFCKIVREVLVELELPHLLVNCARGSPKRNILYQKTGHFQVPFLEDPNTGVEMFESAEIIEYIRATYTL*