AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0907170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0907170 MtrunA17_Chr6g0455561 85.185 81 12 0 1 81 1 81 3.26e-42 132
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 138 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTTATAACATAAAATT+TGG 0.156199 6_2:+5798035 Msa0907170:three_prime_UTR
AAGAGTCAGCTATGAATATT+TGG 0.188559 6_2:-5798213 None:intergenic
AACATGAACTAAACATTAAA+TGG 0.193871 6_2:-5797798 None:intergenic
GGAAGTTGAGTTTGGTTATT+TGG 0.197481 6_2:-5793650 None:intergenic
ATGAGATTTCTTCACCTTAA+TGG 0.201192 6_2:-5797447 None:intergenic
GAGGAATTGGAGAAGGAAAT+TGG 0.239216 6_2:-5793560 None:intergenic
GTCGAGCATCGGTCTTATTT+AGG 0.246601 6_2:-5796067 None:intergenic
CCATTTGTGAAGAGTGGTTT+TGG 0.248317 6_2:-5796749 None:intergenic
CTATTACTACTGTGATTCTT+TGG 0.257217 6_2:+5794588 Msa0907170:three_prime_UTR
ATTGCTGCTGGAGAAATATT+TGG 0.270817 6_2:+5796544 Msa0907170:three_prime_UTR
GTGAAGCTCAAGCAAGTAAT+TGG 0.273688 6_2:+5794380 Msa0907170:three_prime_UTR
TAAGAATAATGGTTATCTTA+TGG 0.276020 6_2:+5795398 Msa0907170:three_prime_UTR
AGCTTGATAAATCGTCATTC+TGG 0.276618 6_2:+5795623 Msa0907170:three_prime_UTR
ATGTTGAAAATGAGGAATTT+TGG 0.277119 6_2:-5793671 None:intergenic
TTGAATTAGTCCATGTAAAA+AGG 0.281968 6_2:-5797882 None:intergenic
TGATTGCAATCGGAGAGTTT+TGG 0.282115 6_2:+5794627 Msa0907170:three_prime_UTR
AGATGAAGTTAGAATATTAA+AGG 0.285974 6_2:+5795825 Msa0907170:three_prime_UTR
ATTACTCTCCACATATTAAA+AGG 0.296956 6_2:-5797829 None:intergenic
GCCTTCTCTGGCTGCACTCA+TGG 0.306503 6_2:+5796260 Msa0907170:three_prime_UTR
TCAGGGATTTATAAGAATAA+TGG 0.316108 6_2:+5795387 Msa0907170:intron
GAAAATGAATGCTCTAATTA+AGG 0.337234 6_2:-5793519 None:intergenic
CTCAAGAGAAGAGTTGAATT+AGG 0.338975 6_2:+5795862 Msa0907170:three_prime_UTR
TTTCAAAAGAACTATACTAT+TGG 0.342797 6_2:+5797358 Msa0907170:three_prime_UTR
AAGTGATCATTGTGAGGAAA+TGG 0.357790 6_2:+5794475 Msa0907170:three_prime_UTR
GAGGGAAAGAGGACCTTTCC+TGG 0.367903 6_2:+5796205 Msa0907170:three_prime_UTR
ATGGATATGTTGGCCTTCTC+TGG 0.368715 6_2:+5796248 Msa0907170:three_prime_UTR
CTCTTCACAAATGGCTGCAT+TGG 0.374268 6_2:+5796758 Msa0907170:three_prime_UTR
GAGGACTATGTATAAATTAG+AGG 0.375492 6_2:-5797613 None:intergenic
GAAATATCCGACCAACTAAT+CGG 0.379890 6_2:-5795904 None:intergenic
ATTCAAATTTATATTGCTGC+TGG 0.386692 6_2:+5796532 Msa0907170:three_prime_UTR
TTCTTTCTACCGACCAAGTT+AGG 0.387922 6_2:-5796604 None:intergenic
AATCACATTATCTTAGATAA+AGG 0.388311 6_2:+5797586 Msa0907170:three_prime_UTR
ACCGTCTTTCCTCTTAAGTT+CGG 0.391839 6_2:-5796446 None:intergenic
TCTTGGTGACTGAAACAATA+AGG 0.397969 6_2:-5794674 None:intergenic
TATCTTATGGTTTCTTGCAA+TGG 0.398386 6_2:+5795411 Msa0907170:three_prime_UTR
TTCTTAGATATGCTTATCCT+TGG 0.399940 6_2:+5796401 Msa0907170:intron
GGCATACCCTTCAACAACTT+TGG 0.401643 6_2:-5794653 None:intergenic
GAAATTGGGAAGAAGTGAAA+AGG 0.410900 6_2:-5793545 None:intergenic
CCAAAACCACTCTTCACAAA+TGG 0.425076 6_2:+5796749 Msa0907170:three_prime_UTR
ATATTTGTTCCAACATATGA+TGG 0.428867 6_2:+5796807 Msa0907170:three_prime_UTR
AGGAATTGGAGAAGGAAATT+GGG 0.429241 6_2:-5793559 None:intergenic
TGTAGCGAAGGCTAGCGTTT+CGG 0.441302 6_2:+5794715 Msa0907170:three_prime_UTR
TGCTCTAATATTGAAAGCAC+TGG 0.443798 6_2:+5796495 Msa0907170:three_prime_UTR
TATGAATAAGTCATTAAGTT+GGG 0.450748 6_2:+5797415 Msa0907170:three_prime_UTR
TTAGATATGCTTATCCTTGG+TGG 0.452084 6_2:+5796404 Msa0907170:intron
TTCACTTTCTGCAGATTCCT+AGG 0.452684 6_2:+5797335 Msa0907170:intron
GAAGGCTAGCGTTTCGGCTA+AGG 0.452704 6_2:+5794721 Msa0907170:three_prime_UTR
AAATATCCGACCAACTAATC+GGG 0.453315 6_2:-5795903 None:intergenic
GTTGTTCAGTTGATTGCAAT+CGG 0.456722 6_2:+5794617 Msa0907170:three_prime_UTR
CGCAGATTCTTCCTCTCATA+CGG 0.465185 6_2:+5796027 Msa0907170:intron
TCATAAATTCCGAACTTAAG+AGG 0.466422 6_2:+5796437 Msa0907170:three_prime_UTR
TCTAATTAAGGCGGCAGAGA+AGG 0.467751 6_2:-5793507 None:intergenic
GCGAGCTACTTATCCTAACT+TGG 0.472434 6_2:+5796591 Msa0907170:three_prime_UTR
ACTATTGGATAGAAAGCATC+TGG 0.472946 6_2:+5797373 Msa0907170:three_prime_UTR
GAGATTCCGGCGAAGATCGC+CGG 0.476159 6_2:-5793597 None:intergenic
TTGGGGTCCAAAGTTGTTGA+AGG 0.477681 6_2:+5794646 Msa0907170:three_prime_UTR
TATCTACATCAAATATGTCT+TGG 0.480238 6_2:-5795783 None:intergenic
TGCTTTCTTGTTAGTATATG+CGG 0.480965 6_2:+5797703 Msa0907170:three_prime_UTR
TAGATATGAGATGGATATGT+TGG 0.483181 6_2:+5796238 Msa0907170:three_prime_UTR
GCTTGATAAATCGTCATTCT+GGG 0.485095 6_2:+5795624 Msa0907170:three_prime_UTR
AATATTAGAGCAGTTTCCTC+AGG 0.485547 6_2:-5796484 None:intergenic
GTGAAGAATAGCTTGAAAAG+AGG 0.487666 6_2:-5797632 None:intergenic
ATATGAATAAGTCATTAAGT+TGG 0.488874 6_2:+5797414 Msa0907170:three_prime_UTR
CTTATGGTTTCTTGCAATGG+AGG 0.488912 6_2:+5795414 Msa0907170:three_prime_UTR
ATGTGATAGCAGCGAGGTTG+AGG 0.489083 6_2:+5796283 Msa0907170:three_prime_UTR
TGGAAATACATCAAATCTGA+AGG 0.489779 6_2:-5796729 None:intergenic
GCAGTTTCCTCAGGTGTTAA+CGG 0.492035 6_2:-5796475 None:intergenic
CATATCTAAGATGAAGTACC+AGG 0.495742 6_2:-5796223 None:intergenic
AAATTGGGAAGAAGTGAAAA+GGG 0.497719 6_2:-5793544 None:intergenic
GCCATGTTTCCATCATATGT+TGG 0.500626 6_2:-5796816 None:intergenic
GAAATCTCATGCCAAGAGGA+TGG 0.502076 6_2:+5797460 Msa0907170:three_prime_UTR
ATGAAGTTGTGAAATCTAAG+AGG 0.503101 6_2:+5794525 Msa0907170:three_prime_UTR
ACAATATCTTAATCAGAAGT+AGG 0.506935 6_2:-5798283 None:intergenic
CCACAGCTGAAGATGCATCT+TGG 0.508649 6_2:-5794691 None:intergenic
AGCTGACTCTTTAAATCATG+TGG 0.510746 6_2:+5798225 Msa0907170:three_prime_UTR
GGTAAGGAAGGAAACTCTGC+TGG 0.511062 6_2:+5796704 Msa0907170:intron
GCCATCCACACTTTGATCCT+CGG 0.511148 6_2:-5794560 None:intergenic
TTATCCTTGGTGGAAGGAAA+AGG 0.516235 6_2:+5796414 Msa0907170:three_prime_UTR
CTCTATAGTTCATCTTGAAG+TGG 0.523600 6_2:-5797563 None:intergenic
CTAATTAAGGCGGCAGAGAA+GGG 0.526175 6_2:-5793506 None:intergenic
AAGTAGCAATGTTGAAAATG+AGG 0.529002 6_2:-5793679 None:intergenic
TATTCATATATAGATCTATG+AGG 0.530192 6_2:-5797400 None:intergenic
TCAACTCTTCTCTTGAGCCT+AGG 0.531532 6_2:-5795856 None:intergenic
TCCGAACTTAAGAGGAAAGA+CGG 0.533451 6_2:+5796445 Msa0907170:three_prime_UTR
AGAAAGCATAATTGAATCTG+AGG 0.534913 6_2:-5797688 None:intergenic
ATTCATATATAGATCTATGA+GGG 0.537959 6_2:-5797399 None:intergenic
CGTCATTCTGGGCCGATCCA+AGG 0.538229 6_2:+5795635 Msa0907170:three_prime_UTR
TTCAGCTGTGGTTGTAGCGA+AGG 0.547529 6_2:+5794703 Msa0907170:three_prime_UTR
AACATGGCTAAAGTTGTTGA+AGG 0.548148 6_2:+5796831 Msa0907170:three_prime_UTR
AATCTCATCGGAAAACTCAC+CGG 0.548234 6_2:+5793614 Msa0907170:CDS
AATGACGATTTATCAAGCTC+TGG 0.553192 6_2:-5795619 None:intergenic
ATGCAGCCATTTGTGAAGAG+TGG 0.560529 6_2:-5796755 None:intergenic
CATTGTGAGGAAATGGAGAT+GGG 0.560789 6_2:+5794482 Msa0907170:three_prime_UTR
TGGCAAGCATTCATGAGGGT+TGG 0.561491 6_2:-5797543 None:intergenic
CAATAAAACAATACCTTCTG+TGG 0.571447 6_2:-5796854 None:intergenic
AAATCTCATGCCAAGAGGAT+GGG 0.571821 6_2:+5797461 Msa0907170:three_prime_UTR
AGGTTATCAAAAGTATCTGA+TGG 0.572072 6_2:+5794449 Msa0907170:three_prime_UTR
TGGGGTCCAAAGTTGTTGAA+GGG 0.572393 6_2:+5794647 Msa0907170:three_prime_UTR
ACTTCATCTTAGATATGAGA+TGG 0.574403 6_2:+5796229 Msa0907170:three_prime_UTR
CTAAGATGAAGTACCAGGAA+AGG 0.576609 6_2:-5796218 None:intergenic
GCCGAGGATCAAAGTGTGGA+TGG 0.578147 6_2:+5794559 Msa0907170:three_prime_UTR
ACTCTTCTCTTGAGCCTAGG+TGG 0.580749 6_2:-5795853 None:intergenic
ATATGCTTATCCTTGGTGGA+AGG 0.581937 6_2:+5796408 Msa0907170:three_prime_UTR
TCATTGTGAGGAAATGGAGA+TGG 0.586151 6_2:+5794481 Msa0907170:three_prime_UTR
ATTTGGTGGAAAGAGAAGAA+TGG 0.586855 6_2:+5796561 Msa0907170:three_prime_UTR
GAAAGCATAATTGAATCTGA+GGG 0.593127 6_2:-5797687 None:intergenic
TGAAGTGGCAAGCATTCATG+AGG 0.593182 6_2:-5797548 None:intergenic
ACCTTGTGTTTCCGTATGAG+AGG 0.596897 6_2:-5796038 None:intergenic
AGAGGTTTGTTGTAAAGCCG+AGG 0.599346 6_2:+5794543 Msa0907170:three_prime_UTR
TCAACGCATTAAAATTTACT+CGG 0.602768 6_2:-5796133 None:intergenic
GATCTTCGCCGGAATCTCAT+CGG 0.605646 6_2:+5793602 Msa0907170:CDS
ATTGTTAGCAAGTCGAGCAT+CGG 0.606467 6_2:-5796078 None:intergenic
TTGGGAAGAAGTGAAAAGGG+AGG 0.613735 6_2:-5793541 None:intergenic
TATTTAAAGCAATAGCAAAG+TGG 0.615096 6_2:+5798091 Msa0907170:three_prime_UTR
TTGAGGAACTCACACGAATG+AGG 0.617787 6_2:+5796300 Msa0907170:three_prime_UTR
CCAAGATGCATCTTCAGCTG+TGG 0.622819 6_2:+5794691 Msa0907170:three_prime_UTR
ACTTCTCAGATAGAACAACT+AGG 0.625398 6_2:+5796161 Msa0907170:three_prime_UTR
GCTGCTGGAGAAATATTTGG+TGG 0.627092 6_2:+5796547 Msa0907170:three_prime_UTR
ACAATGTGCAAACCTTGGAT+CGG 0.628923 6_2:-5795647 None:intergenic
ATTCTTCACTAAAATCACGA+TGG 0.634042 6_2:+5797646 Msa0907170:three_prime_UTR
AAGTTGTTGAAGGCCACAGA+AGG 0.635026 6_2:+5796841 Msa0907170:three_prime_UTR
TCCAACATATGATGGAAACA+TGG 0.636574 6_2:+5796815 Msa0907170:three_prime_UTR
TCCATGAGTGCAGCCAGAGA+AGG 0.637197 6_2:-5796261 None:intergenic
TCTACTACCACAGGTAAGGA+AGG 0.638240 6_2:+5796692 Msa0907170:intron
AATATCCGACCAACTAATCG+GGG 0.639424 6_2:-5795902 None:intergenic
GATGCTCGACTTGCTAACAA+TGG 0.647559 6_2:+5796080 Msa0907170:three_prime_UTR
AACTAGGTAGAAAGATAGTG+AGG 0.649462 6_2:+5796177 Msa0907170:three_prime_UTR
TATTCTGCAGATATGCGACA+TGG 0.654426 6_2:+5795558 Msa0907170:intron
TAAAGCCGAGGATCAAAGTG+TGG 0.669923 6_2:+5794555 Msa0907170:three_prime_UTR
TCCTCTCATACGGAAACACA+AGG 0.673092 6_2:+5796037 Msa0907170:three_prime_UTR
TTCATATATAGATCTATGAG+GGG 0.674827 6_2:-5797398 None:intergenic
TTTATGTCCGTTAACACCTG+AGG 0.675937 6_2:+5796468 Msa0907170:three_prime_UTR
TATTAAAGGAACTACCACCT+AGG 0.678913 6_2:+5795839 Msa0907170:three_prime_UTR
TGAAGAAATCTCATGCCAAG+AGG 0.682299 6_2:+5797456 Msa0907170:three_prime_UTR
AATGAATGCTCTAATTAAGG+CGG 0.683136 6_2:-5793516 None:intergenic
GAAGTGGCAAGCATTCATGA+GGG 0.699548 6_2:-5797547 None:intergenic
ATATCCGACCAACTAATCGG+GGG 0.718638 6_2:-5795901 None:intergenic
TCATGGATGTGATAGCAGCG+AGG 0.773321 6_2:+5796277 Msa0907170:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTATAAAAAAAAAA+AGG - chr6_2:5795280-5795299 None:intergenic 0.0%
!! AATATAGATATAAAAAACAA+AGG - chr6_2:5794288-5794307 None:intergenic 10.0%
!! CATATTTATAACATAAAATT+TGG + chr6_2:5798035-5798054 Msa0907170:three_prime_UTR 10.0%
!! TCATATAAATTTAATGATTG+CGG - chr6_2:5795496-5795515 None:intergenic 15.0%
!!! AATGAAAGAAATATTTTAAG+AGG + chr6_2:5797973-5797992 Msa0907170:three_prime_UTR 15.0%
!!! ATGAAAGAAATATTTTAAGA+GGG + chr6_2:5797974-5797993 Msa0907170:three_prime_UTR 15.0%
!! ATTCAGAAAATTCTACAAAA+GGG - chr6_2:5793736-5793755 None:intergenic 20.0%
!! AATTCAGAAAATTCTACAAA+AGG - chr6_2:5793737-5793756 None:intergenic 20.0%
!!! AAAGATTAATCACTTTTCAA+TGG - chr6_2:5793779-5793798 None:intergenic 20.0%
!! AATTTGATATTCTCTCAAAA+GGG - chr6_2:5793804-5793823 None:intergenic 20.0%
!! AAATTTGATATTCTCTCAAA+AGG - chr6_2:5793805-5793824 None:intergenic 20.0%
!!! TTGTTTTTGAATTCTGTTTT+TGG + chr6_2:5793916-5793935 Msa0907170:intron 20.0%
!!! TTGATATTTTGATGTTTTCA+AGG + chr6_2:5794026-5794045 Msa0907170:intron 20.0%
!! AAATTTCAAGCCAAAAAATA+AGG - chr6_2:5794133-5794152 None:intergenic 20.0%
!! AGAACTTTAAATCATAAACA+CGG + chr6_2:5794820-5794839 Msa0907170:intron 20.0%
!! TGATAAGAATAAGAATCTTA+TGG + chr6_2:5795335-5795354 Msa0907170:intron 20.0%
!!! ATTTGATAATTCTTTTCATC+AGG + chr6_2:5795369-5795388 Msa0907170:intron 20.0%
!!! TTTGATAATTCTTTTCATCA+GGG + chr6_2:5795370-5795389 Msa0907170:intron 20.0%
!! TAAGAATAATGGTTATCTTA+TGG + chr6_2:5795398-5795417 Msa0907170:three_prime_UTR 20.0%
!!! ATTCTGTTTTTCTCAAAATT+TGG + chr6_2:5795530-5795549 Msa0907170:intron 20.0%
!! AGATGAAGTTAGAATATTAA+AGG + chr6_2:5795825-5795844 Msa0907170:three_prime_UTR 20.0%
!!! CACTTTTGTTAGTAATTTTA+TGG + chr6_2:5797063-5797082 Msa0907170:intron 20.0%
!!! TTGTAATTTTGATACATTCA+AGG + chr6_2:5797188-5797207 Msa0907170:intron 20.0%
!! TTTCAAAAGAACTATACTAT+TGG + chr6_2:5797358-5797377 Msa0907170:three_prime_UTR 20.0%
!! ATTCATATATAGATCTATGA+GGG - chr6_2:5797402-5797421 None:intergenic 20.0%
!! TATTCATATATAGATCTATG+AGG - chr6_2:5797403-5797422 None:intergenic 20.0%
!! ATATGAATAAGTCATTAAGT+TGG + chr6_2:5797414-5797433 Msa0907170:three_prime_UTR 20.0%
!! TATGAATAAGTCATTAAGTT+GGG + chr6_2:5797415-5797434 Msa0907170:three_prime_UTR 20.0%
!!! TAAAAATAGTCTTCTTCTTT+TGG - chr6_2:5797521-5797540 None:intergenic 20.0%
!! AATCACATTATCTTAGATAA+AGG + chr6_2:5797586-5797605 Msa0907170:three_prime_UTR 20.0%
!! AACATGAACTAAACATTAAA+TGG - chr6_2:5797801-5797820 None:intergenic 20.0%
!!! AAATTAGTCCTTTTAATATG+TGG + chr6_2:5797821-5797840 Msa0907170:three_prime_UTR 20.0%
!!! TTGGTAAATTTTATGTTTTG+AGG + chr6_2:5798054-5798073 Msa0907170:three_prime_UTR 20.0%
! GAAAATGAATGCTCTAATTA+AGG - chr6_2:5793522-5793541 None:intergenic 25.0%
! GAAAAGAAAAATAGAGGAAT+TGG - chr6_2:5793576-5793595 None:intergenic 25.0%
!! ATTTGGAAGATATGATTTTC+CGG - chr6_2:5793636-5793655 None:intergenic 25.0%
!! ATGTTGAAAATGAGGAATTT+TGG - chr6_2:5793674-5793693 None:intergenic 25.0%
!!! ATTCTACAAAAGGGTTTTTT+TGG - chr6_2:5793727-5793746 None:intergenic 25.0%
! AAAATCATAACTTTCCTTCT+GGG + chr6_2:5793833-5793852 Msa0907170:intron 25.0%
!!! AATTTGACCACCTTATTTTT+TGG + chr6_2:5794120-5794139 Msa0907170:intron 25.0%
! TATTATCTTTGTGAAGTCAA+TGG + chr6_2:5794152-5794171 Msa0907170:intron 25.0%
! AAAAATCAATGATGTTGTTG+AGG + chr6_2:5794429-5794448 Msa0907170:three_prime_UTR 25.0%
!!! ACAACCAAAAACTTACTTTT+TGG - chr6_2:5794758-5794777 None:intergenic 25.0%
!! TATAAAGGCACAATCTAATT+AGG - chr6_2:5795061-5795080 None:intergenic 25.0%
! TAGATTGTGCCTTTATATTA+TGG + chr6_2:5795064-5795083 Msa0907170:intron 25.0%
! TCAGGGATTTATAAGAATAA+TGG + chr6_2:5795387-5795406 Msa0907170:intron 25.0%
! GAGATTTCAATTAAGAAATC+AGG - chr6_2:5795731-5795750 None:intergenic 25.0%
! AACATCAAAGTAACAAAAAG+AGG - chr6_2:5795753-5795772 None:intergenic 25.0%
! TATCTACATCAAATATGTCT+TGG - chr6_2:5795786-5795805 None:intergenic 25.0%
! TCAACGCATTAAAATTTACT+CGG - chr6_2:5796136-5796155 None:intergenic 25.0%
! ATTCAAATTTATATTGCTGC+TGG + chr6_2:5796532-5796551 Msa0907170:three_prime_UTR 25.0%
!!! TGTTTGTAACCTTTTTTTTC+CGG + chr6_2:5796668-5796687 Msa0907170:intron 25.0%
! ATATTTGTTCCAACATATGA+TGG + chr6_2:5796807-5796826 Msa0907170:three_prime_UTR 25.0%
! ATTACTCTGGTATTAAAATG+AGG + chr6_2:5796954-5796973 Msa0907170:intron 25.0%
!! TGTCATTTCAATACATTTGA+CGG - chr6_2:5797026-5797045 None:intergenic 25.0%
!! TCTAAGATCAAACTAACTAA+CGG + chr6_2:5797112-5797131 Msa0907170:intron 25.0%
! GTACTCTATTAAAATCTTCA+AGG + chr6_2:5797256-5797275 Msa0907170:intron 25.0%
! TTCATATATAGATCTATGAG+GGG - chr6_2:5797401-5797420 None:intergenic 25.0%
! GACTAAAAAACTAAATATCG+AGG - chr6_2:5797779-5797798 None:intergenic 25.0%
! ATTACTCTCCACATATTAAA+AGG - chr6_2:5797832-5797851 None:intergenic 25.0%
!! GGAACTAGTGTTATATTTTA+GGG - chr6_2:5797864-5797883 None:intergenic 25.0%
!! AGGAACTAGTGTTATATTTT+AGG - chr6_2:5797865-5797884 None:intergenic 25.0%
! TTGAATTAGTCCATGTAAAA+AGG - chr6_2:5797885-5797904 None:intergenic 25.0%
!! TATTTAAAGCAATAGCAAAG+TGG + chr6_2:5798091-5798110 Msa0907170:three_prime_UTR 25.0%
!! TCTTTTCCTAACTTCAAAAT+TGG + chr6_2:5798183-5798202 Msa0907170:three_prime_UTR 25.0%
!!! AAAGTACCAATTTTGAAGTT+AGG - chr6_2:5798192-5798211 None:intergenic 25.0%
! ACAATATCTTAATCAGAAGT+AGG - chr6_2:5798286-5798305 None:intergenic 25.0%
AATGAATGCTCTAATTAAGG+CGG - chr6_2:5793519-5793538 None:intergenic 30.0%
AAATTGGGAAGAAGTGAAAA+GGG - chr6_2:5793547-5793566 None:intergenic 30.0%
AAAAATAGAGGAATTGGAGA+AGG - chr6_2:5793570-5793589 None:intergenic 30.0%
!! TCCTCTATTTTTCTTTTCTC+CGG + chr6_2:5793578-5793597 Msa0907170:CDS 30.0%
AAGTAGCAATGTTGAAAATG+AGG - chr6_2:5793682-5793701 None:intergenic 30.0%
CAAAATCATAACTTTCCTTC+TGG + chr6_2:5793832-5793851 Msa0907170:intron 30.0%
AAATCATAACTTTCCTTCTG+GGG + chr6_2:5793834-5793853 Msa0907170:intron 30.0%
!! ATTTAAGTTGCATCCACATA+AGG - chr6_2:5793876-5793895 None:intergenic 30.0%
TCAGAATTCTTAGCTAAAAG+AGG - chr6_2:5793991-5794010 None:intergenic 30.0%
TTTCAAGCCAAAAAATAAGG+TGG - chr6_2:5794130-5794149 None:intergenic 30.0%
!! AGGTTATCAAAAGTATCTGA+TGG + chr6_2:5794449-5794468 Msa0907170:three_prime_UTR 30.0%
ATGAAGTTGTGAAATCTAAG+AGG + chr6_2:5794525-5794544 Msa0907170:three_prime_UTR 30.0%
CTATTACTACTGTGATTCTT+TGG + chr6_2:5794588-5794607 Msa0907170:three_prime_UTR 30.0%
!!! ACCAAAAACTTACTTTTTGG+CGG - chr6_2:5794755-5794774 None:intergenic 30.0%
! AAGACTTTTCTGCAATATCA+TGG - chr6_2:5795023-5795042 None:intergenic 30.0%
TTGTGCCTTTATATTATGGT+TGG + chr6_2:5795068-5795087 Msa0907170:intron 30.0%
! CTTTATATTATGGTTGGTGT+CGG + chr6_2:5795074-5795093 Msa0907170:intron 30.0%
CAGTAGATTGTTGTCAAATA+GGG + chr6_2:5795115-5795134 Msa0907170:intron 30.0%
TATCTTATGGTTTCTTGCAA+TGG + chr6_2:5795411-5795430 Msa0907170:three_prime_UTR 30.0%
AAATTTAATGATTGCGGCAA+AGG - chr6_2:5795490-5795509 None:intergenic 30.0%
ATCAGGAAGATAATCGTAAA+TGG - chr6_2:5795714-5795733 None:intergenic 30.0%
TATTTCGTACTACGAAAAAC+AGG + chr6_2:5795921-5795940 Msa0907170:three_prime_UTR 30.0%
!! GAGTAAATTTTAATGCGTTG+AGG + chr6_2:5796135-5796154 Msa0907170:three_prime_UTR 30.0%
! AAAGATAGTGAGGATTTTGA+GGG + chr6_2:5796187-5796206 Msa0907170:three_prime_UTR 30.0%
ACTTCATCTTAGATATGAGA+TGG + chr6_2:5796229-5796248 Msa0907170:three_prime_UTR 30.0%
TAGATATGAGATGGATATGT+TGG + chr6_2:5796238-5796257 Msa0907170:three_prime_UTR 30.0%
TTCTTAGATATGCTTATCCT+TGG + chr6_2:5796401-5796420 Msa0907170:intron 30.0%
TCATAAATTCCGAACTTAAG+AGG + chr6_2:5796437-5796456 Msa0907170:three_prime_UTR 30.0%
TGGAAATACATCAAATCTGA+AGG - chr6_2:5796732-5796751 None:intergenic 30.0%
CAATAAAACAATACCTTCTG+TGG - chr6_2:5796857-5796876 None:intergenic 30.0%
TCTGAATAGTACATCATCAA+AGG - chr6_2:5796920-5796939 None:intergenic 30.0%
! AAATGAGGAAATCGTCATTT+TGG + chr6_2:5796969-5796988 Msa0907170:intron 30.0%
AATAGAGTACATAGTCACTT+CGG - chr6_2:5797246-5797265 None:intergenic 30.0%
AATAGAGTACATAGTCACTT+CGG - chr6_2:5797246-5797265 None:intergenic 30.0%
!!! GTATAGTTCTTTTGAAACCT+AGG - chr6_2:5797355-5797374 None:intergenic 30.0%
! TTGGGATGAATTTTCCATTA+AGG + chr6_2:5797433-5797452 Msa0907170:three_prime_UTR 30.0%
ATGAGATTTCTTCACCTTAA+TGG - chr6_2:5797450-5797469 None:intergenic 30.0%
! GGATGATAACTCTTCTTTTT+GGG - chr6_2:5797490-5797509 None:intergenic 30.0%
! CTTCTTCTTTTGGTCTATTT+GGG - chr6_2:5797511-5797530 None:intergenic 30.0%
! TCTTCTTCTTTTGGTCTATT+TGG - chr6_2:5797512-5797531 None:intergenic 30.0%
GAGGACTATGTATAAATTAG+AGG - chr6_2:5797616-5797635 None:intergenic 30.0%
ATTCTTCACTAAAATCACGA+TGG + chr6_2:5797646-5797665 Msa0907170:three_prime_UTR 30.0%
! GAAAGCATAATTGAATCTGA+GGG - chr6_2:5797690-5797709 None:intergenic 30.0%
! AGAAAGCATAATTGAATCTG+AGG - chr6_2:5797691-5797710 None:intergenic 30.0%
TGCTTTCTTGTTAGTATATG+CGG + chr6_2:5797703-5797722 Msa0907170:three_prime_UTR 30.0%
! AACACTAGTTCCTTTTTACA+TGG + chr6_2:5797872-5797891 Msa0907170:three_prime_UTR 30.0%
ACCAGAGAAAAACATATTAG+TGG + chr6_2:5798003-5798022 Msa0907170:three_prime_UTR 30.0%
CCAGAGAAAAACATATTAGT+GGG + chr6_2:5798004-5798023 Msa0907170:three_prime_UTR 30.0%
AAGAGTCAGCTATGAATATT+TGG - chr6_2:5798216-5798235 None:intergenic 30.0%
GAAATTGGGAAGAAGTGAAA+AGG - chr6_2:5793548-5793567 None:intergenic 35.0%
AGGAATTGGAGAAGGAAATT+GGG - chr6_2:5793562-5793581 None:intergenic 35.0%
GGAAGTTGAGTTTGGTTATT+TGG - chr6_2:5793653-5793672 None:intergenic 35.0%
!! GGAATTTTGGAAGTTGAGTT+TGG - chr6_2:5793661-5793680 None:intergenic 35.0%
!! TGTTGATGATGCTTGAAGTT+AGG - chr6_2:5794217-5794236 None:intergenic 35.0%
TGGAAAAAGTGATCATTGTG+AGG + chr6_2:5794469-5794488 Msa0907170:three_prime_UTR 35.0%
AAGTGATCATTGTGAGGAAA+TGG + chr6_2:5794475-5794494 Msa0907170:three_prime_UTR 35.0%
!! ATGGGATTCAATGTTTTGAG+TGG + chr6_2:5794500-5794519 Msa0907170:three_prime_UTR 35.0%
GTTGTTCAGTTGATTGCAAT+CGG + chr6_2:5794617-5794636 Msa0907170:three_prime_UTR 35.0%
! TCTTGGTGACTGAAACAATA+AGG - chr6_2:5794677-5794696 None:intergenic 35.0%
! TCCGCCAAAAAGTAAGTTTT+TGG + chr6_2:5794751-5794770 Msa0907170:intron 35.0%
! TGCAATATCATGGATTGCAA+CGG - chr6_2:5795013-5795032 None:intergenic 35.0%
CGACACCAACCATAATATAA+AGG - chr6_2:5795076-5795095 None:intergenic 35.0%
AACAATCTACTGCACTATCA+TGG - chr6_2:5795107-5795126 None:intergenic 35.0%
GCAGTAGATTGTTGTCAAAT+AGG + chr6_2:5795114-5795133 Msa0907170:intron 35.0%
CTTACATAGCAATCACATTG+TGG + chr6_2:5795138-5795157 Msa0907170:intron 35.0%
GATAATGTCGCTGTCAAATA+GGG + chr6_2:5795180-5795199 Msa0907170:intron 35.0%
CTTACATAGCAATCACATTG+TGG + chr6_2:5795138-5795157 Msa0907170:intron 35.0%
GGTAACTAATGCTAAGTACT+TGG - chr6_2:5795469-5795488 None:intergenic 35.0%
AATGACGATTTATCAAGCTC+TGG - chr6_2:5795622-5795641 None:intergenic 35.0%
AGCTTGATAAATCGTCATTC+TGG + chr6_2:5795623-5795642 Msa0907170:three_prime_UTR 35.0%
GCTTGATAAATCGTCATTCT+GGG + chr6_2:5795624-5795643 Msa0907170:three_prime_UTR 35.0%
CAATAACAATGTGCAAACCT+TGG - chr6_2:5795655-5795674 None:intergenic 35.0%
TATTAAAGGAACTACCACCT+AGG + chr6_2:5795839-5795858 Msa0907170:three_prime_UTR 35.0%
CTCAAGAGAAGAGTTGAATT+AGG + chr6_2:5795862-5795881 Msa0907170:three_prime_UTR 35.0%
AAATATCCGACCAACTAATC+GGG - chr6_2:5795906-5795925 None:intergenic 35.0%
GAAATATCCGACCAACTAAT+CGG - chr6_2:5795907-5795926 None:intergenic 35.0%
ACTTCTCAGATAGAACAACT+AGG + chr6_2:5796161-5796180 Msa0907170:three_prime_UTR 35.0%
AACTAGGTAGAAAGATAGTG+AGG + chr6_2:5796177-5796196 Msa0907170:three_prime_UTR 35.0%
! GAAAGATAGTGAGGATTTTG+AGG + chr6_2:5796186-5796205 Msa0907170:three_prime_UTR 35.0%
! CATATCTAAGATGAAGTACC+AGG - chr6_2:5796226-5796245 None:intergenic 35.0%
TTAGATATGCTTATCCTTGG+TGG + chr6_2:5796404-5796423 Msa0907170:intron 35.0%
AATATTAGAGCAGTTTCCTC+AGG - chr6_2:5796487-5796506 None:intergenic 35.0%
! TGCTCTAATATTGAAAGCAC+TGG + chr6_2:5796495-5796514 Msa0907170:three_prime_UTR 35.0%
ATTGCTGCTGGAGAAATATT+TGG + chr6_2:5796544-5796563 Msa0907170:three_prime_UTR 35.0%
! ATTTGGTGGAAAGAGAAGAA+TGG + chr6_2:5796561-5796580 Msa0907170:three_prime_UTR 35.0%
GTAGTAGAACCGGAAAAAAA+AGG - chr6_2:5796680-5796699 None:intergenic 35.0%
! TCCAACATATGATGGAAACA+TGG + chr6_2:5796815-5796834 Msa0907170:three_prime_UTR 35.0%
AACATGGCTAAAGTTGTTGA+AGG + chr6_2:5796831-5796850 Msa0907170:three_prime_UTR 35.0%
TTCTATGTCATCTTCTCTGT+AGG + chr6_2:5796889-5796908 Msa0907170:intron 35.0%
TGCATGATACATCATTACTC+TGG + chr6_2:5796941-5796960 Msa0907170:intron 35.0%
! GTGTATTTCCTTTGAGAGTT+TGG - chr6_2:5797155-5797174 None:intergenic 35.0%
CAAAGGAAATACACATTCGT+AGG + chr6_2:5797161-5797180 Msa0907170:intron 35.0%
!! ACTATTGGATAGAAAGCATC+TGG + chr6_2:5797373-5797392 Msa0907170:three_prime_UTR 35.0%
! GGGATGATAACTCTTCTTTT+TGG - chr6_2:5797491-5797510 None:intergenic 35.0%
CTCTATAGTTCATCTTGAAG+TGG - chr6_2:5797566-5797585 None:intergenic 35.0%
GTGAAGAATAGCTTGAAAAG+AGG - chr6_2:5797635-5797654 None:intergenic 35.0%
! CCCACTAATATGTTTTTCTC+TGG - chr6_2:5798007-5798026 None:intergenic 35.0%
! AGCTGACTCTTTAAATCATG+TGG + chr6_2:5798225-5798244 Msa0907170:three_prime_UTR 35.0%
! AGAAAAATGCTGAAGTGTCT+TGG + chr6_2:5798258-5798277 Msa0907170:three_prime_UTR 35.0%
GAGGAATTGGAGAAGGAAAT+TGG - chr6_2:5793563-5793582 None:intergenic 40.0%
GCCGGAGAAAAGAAAAATAG+AGG - chr6_2:5793582-5793601 None:intergenic 40.0%
! TGAGTTTTCCGATGAGATTC+CGG - chr6_2:5793613-5793632 None:intergenic 40.0%
AATCTCATCGGAAAACTCAC+CGG + chr6_2:5793614-5793633 Msa0907170:CDS 40.0%
CTTCATTCTCCAACCTTATG+TGG + chr6_2:5793860-5793879 Msa0907170:intron 40.0%
AAGTTGCATCCACATAAGGT+TGG - chr6_2:5793872-5793891 None:intergenic 40.0%
ACTCAAAACATTGCCTTGTC+TGG + chr6_2:5794089-5794108 Msa0907170:intron 40.0%
AAAACATTGCCTTGTCTGGT+GGG + chr6_2:5794093-5794112 Msa0907170:intron 40.0%
GTGAAGCTCAAGCAAGTAAT+TGG + chr6_2:5794380-5794399 Msa0907170:three_prime_UTR 40.0%
TCATTGTGAGGAAATGGAGA+TGG + chr6_2:5794481-5794500 Msa0907170:three_prime_UTR 40.0%
CATTGTGAGGAAATGGAGAT+GGG + chr6_2:5794482-5794501 Msa0907170:three_prime_UTR 40.0%
! TGATTGCAATCGGAGAGTTT+TGG + chr6_2:5794627-5794646 Msa0907170:three_prime_UTR 40.0%
! GATTGCAATCGGAGAGTTTT+GGG + chr6_2:5794628-5794647 Msa0907170:three_prime_UTR 40.0%
! ATTGCAATCGGAGAGTTTTG+GGG + chr6_2:5794629-5794648 Msa0907170:three_prime_UTR 40.0%
ATGCATGAGCCCTTATATTG+TGG + chr6_2:5794980-5794999 Msa0907170:intron 40.0%
GGACTGTGACCACAATATAA+GGG - chr6_2:5794992-5795011 None:intergenic 40.0%
CGATAATGTCGCTGTCAAAT+AGG + chr6_2:5795179-5795198 Msa0907170:intron 40.0%
CTTATGGTTTCTTGCAATGG+AGG + chr6_2:5795414-5795433 Msa0907170:three_prime_UTR 40.0%
TATTCTGCAGATATGCGACA+TGG + chr6_2:5795558-5795577 Msa0907170:intron 40.0%
ACAATGTGCAAACCTTGGAT+CGG - chr6_2:5795650-5795669 None:intergenic 40.0%
AATATCCGACCAACTAATCG+GGG - chr6_2:5795905-5795924 None:intergenic 40.0%
ATTGTTAGCAAGTCGAGCAT+CGG - chr6_2:5796081-5796100 None:intergenic 40.0%
! CTCAGCTTTTGAATCTCGAT+AGG - chr6_2:5796110-5796129 None:intergenic 40.0%
! CTAAGATGAAGTACCAGGAA+AGG - chr6_2:5796221-5796240 None:intergenic 40.0%
ATATGCTTATCCTTGGTGGA+AGG + chr6_2:5796408-5796427 Msa0907170:three_prime_UTR 40.0%
TTATCCTTGGTGGAAGGAAA+AGG + chr6_2:5796414-5796433 Msa0907170:three_prime_UTR 40.0%
TCCGAACTTAAGAGGAAAGA+CGG + chr6_2:5796445-5796464 Msa0907170:three_prime_UTR 40.0%
ACCGTCTTTCCTCTTAAGTT+CGG - chr6_2:5796449-5796468 None:intergenic 40.0%
TTTATGTCCGTTAACACCTG+AGG + chr6_2:5796468-5796487 Msa0907170:three_prime_UTR 40.0%
GCTACTTATCCTAACTTGGT+CGG + chr6_2:5796595-5796614 Msa0907170:intron 40.0%
TTCTTTCTACCGACCAAGTT+AGG - chr6_2:5796607-5796626 None:intergenic 40.0%
! CCATTTGTGAAGAGTGGTTT+TGG - chr6_2:5796752-5796771 None:intergenic 40.0%
CCAAAACCACTCTTCACAAA+TGG + chr6_2:5796749-5796768 Msa0907170:three_prime_UTR 40.0%
GCCATGTTTCCATCATATGT+TGG - chr6_2:5796819-5796838 None:intergenic 40.0%
! TTTTGGTCCTTTAATGTGCG+AGG + chr6_2:5796986-5797005 Msa0907170:intron 40.0%
ACTAACAAAAGTGACACGCA+TGG - chr6_2:5797056-5797075 None:intergenic 40.0%
TCGAAGAACCAAACTCTCAA+AGG + chr6_2:5797144-5797163 Msa0907170:intron 40.0%
TTCACTTTCTGCAGATTCCT+AGG + chr6_2:5797335-5797354 Msa0907170:intron 40.0%
TGAAGAAATCTCATGCCAAG+AGG + chr6_2:5797456-5797475 Msa0907170:three_prime_UTR 40.0%
AAATCTCATGCCAAGAGGAT+GGG + chr6_2:5797461-5797480 Msa0907170:three_prime_UTR 40.0%
CTAATTAAGGCGGCAGAGAA+GGG - chr6_2:5793509-5793528 None:intergenic 45.0%
TCTAATTAAGGCGGCAGAGA+AGG - chr6_2:5793510-5793529 None:intergenic 45.0%
TTGGGAAGAAGTGAAAAGGG+AGG - chr6_2:5793544-5793563 None:intergenic 45.0%
CAAAACATTGCCTTGTCTGG+TGG + chr6_2:5794092-5794111 Msa0907170:intron 45.0%
AAACATTGCCTTGTCTGGTG+GGG + chr6_2:5794094-5794113 Msa0907170:intron 45.0%
!! AGAGGTTTGTTGTAAAGCCG+AGG + chr6_2:5794543-5794562 Msa0907170:three_prime_UTR 45.0%
TAAAGCCGAGGATCAAAGTG+TGG + chr6_2:5794555-5794574 Msa0907170:three_prime_UTR 45.0%
TTGGGGTCCAAAGTTGTTGA+AGG + chr6_2:5794646-5794665 Msa0907170:three_prime_UTR 45.0%
TGGGGTCCAAAGTTGTTGAA+GGG + chr6_2:5794647-5794666 Msa0907170:three_prime_UTR 45.0%
GGCATACCCTTCAACAACTT+TGG - chr6_2:5794656-5794675 None:intergenic 45.0%
AAACACGGACACGTTGACAT+CGG + chr6_2:5794835-5794854 Msa0907170:intron 45.0%
CGGACTGTGACCACAATATA+AGG - chr6_2:5794993-5795012 None:intergenic 45.0%
TCAACTCTTCTCTTGAGCCT+AGG - chr6_2:5795859-5795878 None:intergenic 45.0%
ATATCCGACCAACTAATCGG+GGG - chr6_2:5795904-5795923 None:intergenic 45.0%
CGCAGATTCTTCCTCTCATA+CGG + chr6_2:5796027-5796046 Msa0907170:intron 45.0%
TCCTCTCATACGGAAACACA+AGG + chr6_2:5796037-5796056 Msa0907170:three_prime_UTR 45.0%
ACCTTGTGTTTCCGTATGAG+AGG - chr6_2:5796041-5796060 None:intergenic 45.0%
!! GTCGAGCATCGGTCTTATTT+AGG - chr6_2:5796070-5796089 None:intergenic 45.0%
!! GATGCTCGACTTGCTAACAA+TGG + chr6_2:5796080-5796099 Msa0907170:three_prime_UTR 45.0%
!! GTGAGGATTTTGAGGGAAAG+AGG + chr6_2:5796194-5796213 Msa0907170:three_prime_UTR 45.0%
!! ATGGATATGTTGGCCTTCTC+TGG + chr6_2:5796248-5796267 Msa0907170:three_prime_UTR 45.0%
TTGAGGAACTCACACGAATG+AGG + chr6_2:5796300-5796319 Msa0907170:three_prime_UTR 45.0%
! ATGACCTTTTCCTTCCACCA+AGG - chr6_2:5796421-5796440 None:intergenic 45.0%
GCAGTTTCCTCAGGTGTTAA+CGG - chr6_2:5796478-5796497 None:intergenic 45.0%
GCTGCTGGAGAAATATTTGG+TGG + chr6_2:5796547-5796566 Msa0907170:three_prime_UTR 45.0%
GCGAGCTACTTATCCTAACT+TGG + chr6_2:5796591-5796610 Msa0907170:three_prime_UTR 45.0%
! TTTTCCGGTTCTACTACCAC+AGG + chr6_2:5796683-5796702 Msa0907170:intron 45.0%
CTTACCTGTGGTAGTAGAAC+CGG - chr6_2:5796690-5796709 None:intergenic 45.0%
TCTACTACCACAGGTAAGGA+AGG + chr6_2:5796692-5796711 Msa0907170:intron 45.0%
AGAGTTTCCTTCCTTACCTG+TGG - chr6_2:5796702-5796721 None:intergenic 45.0%
ATGCAGCCATTTGTGAAGAG+TGG - chr6_2:5796758-5796777 None:intergenic 45.0%
CTCTTCACAAATGGCTGCAT+TGG + chr6_2:5796758-5796777 Msa0907170:three_prime_UTR 45.0%
AAGTTGTTGAAGGCCACAGA+AGG + chr6_2:5796841-5796860 Msa0907170:three_prime_UTR 45.0%
GACAGCGTTTGACACATTCA+AGG + chr6_2:5797219-5797238 Msa0907170:intron 45.0%
GAAATCTCATGCCAAGAGGA+TGG + chr6_2:5797460-5797479 Msa0907170:three_prime_UTR 45.0%
!!! TTTTGGGTTTCCCATCCTCT+TGG - chr6_2:5797474-5797493 None:intergenic 45.0%
GAAGTGGCAAGCATTCATGA+GGG - chr6_2:5797550-5797569 None:intergenic 45.0%
TGAAGTGGCAAGCATTCATG+AGG - chr6_2:5797551-5797570 None:intergenic 45.0%
!!! TTATTTTTTGTATTTTTTTA+AGG + chr6_2:5794331-5794350 Msa0907170:intron 5.0%
GATCTTCGCCGGAATCTCAT+CGG + chr6_2:5793602-5793621 Msa0907170:CDS 50.0%
GAGAATGAAGACACCCCAGA+AGG - chr6_2:5793850-5793869 None:intergenic 50.0%
AAATTCCACCCCACCAGACA+AGG - chr6_2:5794105-5794124 None:intergenic 50.0%
GCCATCCACACTTTGATCCT+CGG - chr6_2:5794563-5794582 None:intergenic 50.0%
CCACAGCTGAAGATGCATCT+TGG - chr6_2:5794694-5794713 None:intergenic 50.0%
CCAAGATGCATCTTCAGCTG+TGG + chr6_2:5794691-5794710 Msa0907170:three_prime_UTR 50.0%
TTCAGCTGTGGTTGTAGCGA+AGG + chr6_2:5794703-5794722 Msa0907170:three_prime_UTR 50.0%
TGTAGCGAAGGCTAGCGTTT+CGG + chr6_2:5794715-5794734 Msa0907170:three_prime_UTR 50.0%
ACTCTTCTCTTGAGCCTAGG+TGG - chr6_2:5795856-5795875 None:intergenic 50.0%
ACTCATTGCCCCCGATTAGT+TGG + chr6_2:5795893-5795912 Msa0907170:three_prime_UTR 50.0%
! ATTGCCCCCGATTAGTTGGT+CGG + chr6_2:5795897-5795916 Msa0907170:three_prime_UTR 50.0%
TCATGGATGTGATAGCAGCG+AGG + chr6_2:5796277-5796296 Msa0907170:three_prime_UTR 50.0%
ATGTGATAGCAGCGAGGTTG+AGG + chr6_2:5796283-5796302 Msa0907170:three_prime_UTR 50.0%
CGGTTCTACTACCACAGGTA+AGG + chr6_2:5796688-5796707 Msa0907170:intron 50.0%
GGTAAGGAAGGAAACTCTGC+TGG + chr6_2:5796704-5796723 Msa0907170:intron 50.0%
TGGTCCTTTAATGTGCGAGG+CGG + chr6_2:5796989-5797008 Msa0907170:intron 50.0%
TGGCAAGCATTCATGAGGGT+TGG - chr6_2:5797546-5797565 None:intergenic 50.0%
! TTTTCTCCGGCGATCTTCGC+CGG + chr6_2:5793591-5793610 Msa0907170:CDS 55.0%
GCCGAGGATCAAAGTGTGGA+TGG + chr6_2:5794559-5794578 Msa0907170:three_prime_UTR 55.0%
GAAGGCTAGCGTTTCGGCTA+AGG + chr6_2:5794721-5794740 Msa0907170:three_prime_UTR 55.0%
GAGGGAAAGAGGACCTTTCC+TGG + chr6_2:5796205-5796224 Msa0907170:three_prime_UTR 55.0%
TCCATGAGTGCAGCCAGAGA+AGG - chr6_2:5796264-5796283 None:intergenic 55.0%
GACACCGCCTCGCACATTAA+AGG - chr6_2:5796996-5797015 None:intergenic 55.0%
GAGATTCCGGCGAAGATCGC+CGG - chr6_2:5793600-5793619 None:intergenic 60.0%
CATTGCCTTGTCTGGTGGGG+TGG + chr6_2:5794097-5794116 Msa0907170:intron 60.0%
CGTCATTCTGGGCCGATCCA+AGG + chr6_2:5795635-5795654 Msa0907170:three_prime_UTR 60.0%
GCCTTCTCTGGCTGCACTCA+TGG + chr6_2:5796260-5796279 Msa0907170:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 5793500 5798320 5793500 ID=Msa0907170;Name=Msa0907170
chr6_2 mRNA 5793500 5798320 5793500 ID=Msa0907170-mRNA-1;Parent=Msa0907170;Name=Msa0907170-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.87|0.88|1|0.87|0.77|9|2336|86
chr6_2 exon 5793500 5793739 5793500 ID=Msa0907170-mRNA-1:exon:1777;Parent=Msa0907170-mRNA-1
chr6_2 exon 5794353 5794761 5794353 ID=Msa0907170-mRNA-1:exon:1778;Parent=Msa0907170-mRNA-1
chr6_2 exon 5795391 5795458 5795391 ID=Msa0907170-mRNA-1:exon:1779;Parent=Msa0907170-mRNA-1
chr6_2 exon 5795568 5795656 5795568 ID=Msa0907170-mRNA-1:exon:1780;Parent=Msa0907170-mRNA-1
chr6_2 exon 5795777 5795942 5795777 ID=Msa0907170-mRNA-1:exon:1781;Parent=Msa0907170-mRNA-1
chr6_2 exon 5796032 5796321 5796032 ID=Msa0907170-mRNA-1:exon:1782;Parent=Msa0907170-mRNA-1
chr6_2 exon 5796408 5796612 5796408 ID=Msa0907170-mRNA-1:exon:1783;Parent=Msa0907170-mRNA-1
chr6_2 exon 5796705 5796862 5796705 ID=Msa0907170-mRNA-1:exon:1784;Parent=Msa0907170-mRNA-1
chr6_2 exon 5797349 5798320 5797349 ID=Msa0907170-mRNA-1:exon:1785;Parent=Msa0907170-mRNA-1
chr6_2 CDS 5793500 5793739 5793500 ID=Msa0907170-mRNA-1:cds;Parent=Msa0907170-mRNA-1
chr6_2 CDS 5794353 5794373 5794353 ID=Msa0907170-mRNA-1:cds;Parent=Msa0907170-mRNA-1
chr6_2 three_prime_UTR 5794374 5794761 5794374 ID=Msa0907170-mRNA-1:three_prime_utr;Parent=Msa0907170-mRNA-1
chr6_2 three_prime_UTR 5795391 5795458 5795391 ID=Msa0907170-mRNA-1:three_prime_utr;Parent=Msa0907170-mRNA-1
chr6_2 three_prime_UTR 5795568 5795656 5795568 ID=Msa0907170-mRNA-1:three_prime_utr;Parent=Msa0907170-mRNA-1
chr6_2 three_prime_UTR 5795777 5795942 5795777 ID=Msa0907170-mRNA-1:three_prime_utr;Parent=Msa0907170-mRNA-1
chr6_2 three_prime_UTR 5796032 5796321 5796032 ID=Msa0907170-mRNA-1:three_prime_utr;Parent=Msa0907170-mRNA-1
chr6_2 three_prime_UTR 5796408 5796612 5796408 ID=Msa0907170-mRNA-1:three_prime_utr;Parent=Msa0907170-mRNA-1
chr6_2 three_prime_UTR 5796705 5796862 5796705 ID=Msa0907170-mRNA-1:three_prime_utr;Parent=Msa0907170-mRNA-1
chr6_2 three_prime_UTR 5797349 5798320 5797349 ID=Msa0907170-mRNA-1:three_prime_utr;Parent=Msa0907170-mRNA-1
Gene Sequence

>Msa0907170

ATGACACCCTTCTCTGCCGCCTTAATTAGAGCATTCATTTTCCTCCCTTTTCACTTCTTCCCAATTTCCTTCTCCAATTCCTCTATTTTTCTTTTCTCCGGCGATCTTCGCCGGAATCTCATCGGAAAACTCACCGGAAAATCATATCTTCCAAATAACCAAACTCAACTTCCAAAATTCCTCATTTTCAACATTGCTACTTCAACTTCTTCAAGAAACACAGTCCAAAAAAACCCTTTTGCTTTGATTGTTGAAGATTGA

Protein sequence

>Msa0907170

MTPFSAALIRAFIFLPFHFFPISFSNSSIFLFSGDLRRNLIGKLTGKSYLPNNQTQLPKFLIFNIATSTSSRNTVQKNPFALIVED*