AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0226590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226590 MtrunA17_Chr2g0332611 96.703 364 6 2 71 428 1 364 0.0 714
Msa0226590 MtrunA17_Chr2g0332601 98.592 71 1 0 1 71 1 71 5.99e-45 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226590 AT1G80210.1 64.020 403 118 8 1 384 1 395 1.35e-177 502
Msa0226590 AT1G80210.2 65.333 375 105 7 1 356 1 369 2.85e-171 484
Msa0226590 AT3G06820.3 65.140 393 111 7 1 372 1 388 5.90e-168 477
Msa0226590 AT3G06820.2 65.140 393 111 7 1 372 1 388 5.90e-168 477
Msa0226590 AT3G06820.1 63.141 312 100 5 71 372 1 307 3.00e-124 363

Find 116 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGATTCTGGGTTTAT+TGG 0.115541 2_1:-77111248 Msa0226590:CDS
CGATGCTCAGTGAAATATTT+TGG 0.127476 2_1:-77108443 Msa0226590:three_prime_UTR
ATGTATCAACTTCTTGATTC+TGG 0.141321 2_1:-77111257 Msa0226590:CDS
CTATTAATCTTTAACCTAAT+TGG 0.182784 2_1:+77113781 None:intergenic
TACTGAAACCGAAGAGATTA+TGG 0.204040 2_1:-77113522 Msa0226590:CDS
TTCTTGATTCTGGGTTTATT+GGG 0.251629 2_1:-77111247 Msa0226590:CDS
ACACCACACTTCGACTTATC+AGG 0.275809 2_1:-77109347 Msa0226590:CDS
ATTTGTTTAATTAGCCAATT+AGG 0.275927 2_1:-77113795 Msa0226590:five_prime_UTR
TTGTTCCTCCAAGAATAAAA+TGG 0.292010 2_1:+77108375 None:intergenic
AGCTATGCACCGCTCAAATA+TGG 0.296293 2_1:-77110376 Msa0226590:CDS
AAAATTAAATCAGGACTATA+CGG 0.302565 2_1:-77108306 Msa0226590:three_prime_UTR
GAGATTATGGGTCTTCTTCT+TGG 0.309605 2_1:-77113509 Msa0226590:CDS
GAATCACCAGTGTCCTGCTC+TGG 0.330705 2_1:+77110928 None:intergenic
TCTTGAAGTGCGTTGATTGC+AGG 0.331174 2_1:+77109197 None:intergenic
AGTTATCTCAATGACATTCA+TGG 0.337538 2_1:-77108347 Msa0226590:three_prime_UTR
GGAGTGTGACTGCATTGATA+TGG 0.369051 2_1:-77113351 Msa0226590:CDS
TGTATCAACTTCTTGATTCT+GGG 0.370430 2_1:-77111256 Msa0226590:CDS
GACTAAGAGAGAATGAAATT+CGG 0.373072 2_1:-77109172 Msa0226590:CDS
GAAGCAGCAGCCAACTGTTC+AGG 0.373869 2_1:+77113274 None:intergenic
TGAAAATGTCCGAAGAAGTT+TGG 0.381529 2_1:-77113571 Msa0226590:CDS
AATGCCGATGCCAACTATCT+AGG 0.397041 2_1:-77110489 Msa0226590:CDS
AGTTATGTCAAAATTAAATC+AGG 0.397209 2_1:-77108315 Msa0226590:three_prime_UTR
AGAGGGAGTGAAGCAAGTTT+AGG 0.400423 2_1:-77108750 Msa0226590:CDS
CGTCGATCAGACCTTGTTTG+AGG 0.408498 2_1:+77113319 None:intergenic
GAGTGAAGAAGCCAAGAGTC+TGG 0.408537 2_1:-77108793 Msa0226590:CDS
ACTGAAACCGAAGAGATTAT+GGG 0.414431 2_1:-77113521 Msa0226590:CDS
AGATGAACTTCCTCGATGTA+TGG 0.414680 2_1:+77108686 None:intergenic
ACTAAGAGAGAATGAAATTC+GGG 0.428257 2_1:-77109171 Msa0226590:intron
TGATGAATCTATATGAATAA+TGG 0.429530 2_1:+77111005 None:intergenic
GAGAATTTAACAACAAGATC+TGG 0.435278 2_1:-77110970 Msa0226590:CDS
CACAGAATGACTGTTACAAC+TGG 0.444669 2_1:-77112623 Msa0226590:intron
GCATGTTAACCAAACTTCTT+CGG 0.444704 2_1:+77113562 None:intergenic
CCTGGTAGCCGGAGCAGAAA+AGG 0.449380 2_1:-77108603 Msa0226590:CDS
TCTTCTTCTTGGCGATATCC+AGG 0.452533 2_1:-77113498 Msa0226590:intron
AACAAGATCTGGTTACTTCA+AGG 0.457060 2_1:-77110959 Msa0226590:CDS
TGCCTCCGCCTCCAGACTCT+TGG 0.459710 2_1:+77108782 None:intergenic
AGCCAAGAGTCTGGAGGCGG+AGG 0.461420 2_1:-77108784 Msa0226590:CDS
GGAAGAACAACGAGGGTGAT+AGG 0.461704 2_1:-77112602 Msa0226590:CDS
AAGAAGACCCATAATCTCTT+CGG 0.464604 2_1:+77113514 None:intergenic
GAGAAGTGCTGGTGCTAGTA+AGG 0.473131 2_1:-77110905 Msa0226590:intron
TAAACTTGCTTCACTCCCTC+TGG 0.474010 2_1:+77108752 None:intergenic
TATGGGAGATGCAACTTGAC+GGG 0.478253 2_1:+77108704 None:intergenic
ATGCCGATGCCAACTATCTA+GGG 0.486981 2_1:-77110488 Msa0226590:CDS
TCTGCTTTCCATCAGATGAC+TGG 0.487274 2_1:+77111073 None:intergenic
GACGGGGAGAAGCAACTTGA+CGG 0.490854 2_1:+77108721 None:intergenic
GAGTGTGACTGCATTGATAT+GGG 0.495477 2_1:-77113350 Msa0226590:CDS
ACGGGGAGAAGCAACTTGAC+GGG 0.497948 2_1:+77108722 None:intergenic
GGTTGAAGAAGGAGGCGAGA+GGG 0.499327 2_1:-77113708 Msa0226590:five_prime_UTR
CATACTTTCTGACATATCCA+TGG 0.509731 2_1:+77110404 None:intergenic
CAGAGTTCAAGTGAATCTCT+TGG 0.511986 2_1:-77108645 Msa0226590:CDS
GTTAAATTCTCTGAGGAACT+TGG 0.513339 2_1:+77110982 None:intergenic
ATTGCTTTCCAGTCATCTGA+TGG 0.523557 2_1:-77111081 Msa0226590:CDS
CTCTGCGAGTTTCTTTGACG+AGG 0.523918 2_1:+77108663 None:intergenic
AATCACCAGTGTCCTGCTCT+GGG 0.524238 2_1:+77110929 None:intergenic
TTTACAGGAGACAGAGGTAT+GGG 0.525737 2_1:+77111036 None:intergenic
GATGAACTTCCTCGATGTAT+GGG 0.533300 2_1:+77108687 None:intergenic
TAGACAGTTGAGGTTGAAGA+AGG 0.533784 2_1:-77113719 Msa0226590:five_prime_UTR
ATGATGATAGCGGCGAATCA+AGG 0.533813 2_1:+77109612 None:intergenic
TAACAATGTTGAATTCTCGT+TGG 0.537203 2_1:-77108579 Msa0226590:three_prime_UTR
TACAATTGTGAGTGGTGACT+TGG 0.540547 2_1:-77108398 Msa0226590:three_prime_UTR
ATCTCAATGACATTCATGGT+TGG 0.540600 2_1:-77108343 Msa0226590:three_prime_UTR
GTATGGGAGATGCAACTTGA+CGG 0.541009 2_1:+77108703 None:intergenic
TCAAAGAGTGTAGCTAGTCC+TGG 0.543158 2_1:-77108621 Msa0226590:CDS
CAAGGATGGCAGCACATGAA+GGG 0.544109 2_1:+77109646 None:intergenic
CAAGGGAGATAGCCCAGAGC+AGG 0.545536 2_1:-77110941 Msa0226590:CDS
ATTTACAGGAGACAGAGGTA+TGG 0.546956 2_1:+77111035 None:intergenic
GAACAACGAGGGTGATAGGC+TGG 0.559162 2_1:-77112598 Msa0226590:CDS
GTGTAGCTAGTCCTGGTAGC+CGG 0.559875 2_1:-77108614 Msa0226590:CDS
TGGTGCAGAGTATATTAGAA+AGG 0.560870 2_1:-77109675 Msa0226590:CDS
ACAAGGATGGCAGCACATGA+AGG 0.562454 2_1:+77109645 None:intergenic
ACAAGATCTGGTTACTTCAA+GGG 0.568314 2_1:-77110958 Msa0226590:CDS
TATCTAGGGAGTGTAAAAGA+TGG 0.569569 2_1:-77110474 Msa0226590:CDS
AAATTAAATCAGGACTATAC+GGG 0.570034 2_1:-77108305 Msa0226590:three_prime_UTR
ACTGGTGATTCGAGAAGTGC+TGG 0.570423 2_1:-77110916 Msa0226590:CDS
ACATACCGACATGTGAAGGC+AGG 0.575866 2_1:+77112549 None:intergenic
AGAAGCCAAGAGTCTGGAGG+CGG 0.576842 2_1:-77108787 Msa0226590:CDS
GCAACATGTACTATTTGAAG+AGG 0.579067 2_1:-77109579 Msa0226590:CDS
CAGTAATATGAGGATGTGAA+TGG 0.584536 2_1:+77112573 None:intergenic
GGATATGTCAGAAAGTATGC+AGG 0.584919 2_1:-77110400 Msa0226590:CDS
GAAGGCAGGACAGTAATATG+AGG 0.590307 2_1:+77112563 None:intergenic
AAGCCATCTTGCAAAATACA+AGG 0.601236 2_1:-77109538 Msa0226590:intron
ACAGTTGAGGTTGAAGAAGG+AGG 0.602951 2_1:-77113716 Msa0226590:five_prime_UTR
GATAGCCCAGAGCAGGACAC+TGG 0.603898 2_1:-77110934 Msa0226590:CDS
AGGTTGAAGAAGGAGGCGAG+AGG 0.607767 2_1:-77113709 Msa0226590:five_prime_UTR
AAGTACATACCGACATGTGA+AGG 0.609102 2_1:+77112545 None:intergenic
CATCGCAGTTGATGATCCCA+TGG 0.612966 2_1:-77110421 Msa0226590:CDS
ATGTACTATTTGAAGAGGAA+CGG 0.613140 2_1:-77109574 Msa0226590:CDS
TGTTTCTGACTAGACAGTTG+AGG 0.614389 2_1:-77113729 Msa0226590:five_prime_UTR
ATACTTTCTGACATATCCAT+GGG 0.614506 2_1:+77110405 None:intergenic
ACTGTCCTGCCTTCACATGT+CGG 0.615521 2_1:-77112554 Msa0226590:intron
TTCGCCGCTATCATCATACA+AGG 0.623157 2_1:-77109606 Msa0226590:CDS
TTACAACGAAGATGCAAACA+AGG 0.623673 2_1:-77111210 Msa0226590:intron
AAGGATGGCAGCACATGAAG+GGG 0.623863 2_1:+77109647 None:intergenic
GCGGAGGCATCTACGTCCAG+AGG 0.627316 2_1:-77108768 Msa0226590:CDS
CGGGGAGAAGCAACTTGACG+GGG 0.643627 2_1:+77108723 None:intergenic
TCTTGTTGTTAAATTCTCTG+AGG 0.649767 2_1:+77110975 None:intergenic
ACTCCCTAGATAGTTGGCAT+CGG 0.650742 2_1:+77110485 None:intergenic
GGGGTGCATCTCCTCAAACA+AGG 0.651860 2_1:-77113330 Msa0226590:CDS
ATCAAGGTTGATAAAAGACA+AGG 0.656437 2_1:+77109628 None:intergenic
CGGAGGCATCTACGTCCAGA+GGG 0.659336 2_1:-77108767 Msa0226590:CDS
AGTGTGACTGCATTGATATG+GGG 0.661338 2_1:-77113349 Msa0226590:CDS
ACCTCATGTCCATATTTGAG+CGG 0.663052 2_1:+77110367 None:intergenic
ATGGGAGATGCAACTTGACG+GGG 0.663091 2_1:+77108705 None:intergenic
CACCACTCACAATTGTACAC+AGG 0.666140 2_1:+77108404 None:intergenic
ACCGCTCAAATATGGACATG+AGG 0.667262 2_1:-77110368 Msa0226590:intron
TGAAGAAGCCAAGAGTCTGG+AGG 0.667597 2_1:-77108790 Msa0226590:CDS
AAGCCTGATAAGTCGAAGTG+TGG 0.672156 2_1:+77109344 None:intergenic
GTGTGGTGTATGAAAGCGAG+TGG 0.677265 2_1:+77109361 None:intergenic
ATACTCAATCAACTTGCACA+AGG 0.679543 2_1:+77109321 None:intergenic
AGATCCTTGTATGATGATAG+CGG 0.689342 2_1:+77109602 None:intergenic
ACATAGAATGTACATGATAG+CGG 0.690172 2_1:-77108500 Msa0226590:three_prime_UTR
TACAACTGGAAGAACAACGA+GGG 0.713101 2_1:-77112609 Msa0226590:CDS
AGGTTGATAAAAGACAAGGA+TGG 0.722279 2_1:+77109632 None:intergenic
TACCTGTGTACAATTGTGAG+TGG 0.729721 2_1:-77108406 Msa0226590:three_prime_UTR
GTTGCATCTCCCATACATCG+AGG 0.759729 2_1:-77108696 Msa0226590:CDS
TTACAACTGGAAGAACAACG+AGG 0.766921 2_1:-77112610 Msa0226590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGAGATTATTATTATTTT+AGG - chr2_1:77108484-77108503 Msa0226590:three_prime_UTR 10.0%
!!! ATGAGATTATTATTATTTTA+GGG - chr2_1:77108485-77108504 Msa0226590:three_prime_UTR 10.0%
!! AAAAAAATCAAGAATAATTT+GGG + chr2_1:77108680-77108699 None:intergenic 10.0%
!! AAAAAAAATCAAGAATAATT+TGG + chr2_1:77108681-77108700 None:intergenic 10.0%
!!! AATAAAGAATTATTACTTTT+TGG - chr2_1:77112905-77112924 Msa0226590:intron 10.0%
!!! TATTAAAATTTTCAACTTGA+TGG + chr2_1:77108317-77108336 None:intergenic 15.0%
!!! ATTATTATTTTAGGGTTTTT+AGG - chr2_1:77108493-77108512 Msa0226590:three_prime_UTR 15.0%
!!! TTATTATTTTAGGGTTTTTA+GGG - chr2_1:77108494-77108513 Msa0226590:three_prime_UTR 15.0%
!! AAAAAATCAAGAATAATTTG+GGG + chr2_1:77108679-77108698 None:intergenic 15.0%
!!! AAAACTCATTTTTAATTCAA+TGG - chr2_1:77108946-77108965 Msa0226590:intron 15.0%
!!! TTTAAATTGTAATTTTTCCT+AGG - chr2_1:77111587-77111606 Msa0226590:intron 15.0%
!!! TTAAATTGTAATTTTTCCTA+GGG - chr2_1:77111588-77111607 Msa0226590:intron 15.0%
!!! GTTTTAAAATAACACATATT+TGG - chr2_1:77112433-77112452 Msa0226590:intron 15.0%
!! AAATAGGACTAATAAATAAA+CGG + chr2_1:77112865-77112884 None:intergenic 15.0%
!!! TTTATTAGTCCTATTTTTAT+TGG - chr2_1:77112869-77112888 Msa0226590:intron 15.0%
!! GTAAATAACAGTAAAAAAAT+TGG + chr2_1:77113112-77113131 None:intergenic 15.0%
!!! AAGTTGAAAATTTTAATAGC+TGG - chr2_1:77108319-77108338 Msa0226590:three_prime_UTR 20.0%
!! ATTTGTTTAATTAGCCAATT+AGG - chr2_1:77108342-77108361 Msa0226590:three_prime_UTR 20.0%
!! CTATTAATCTTTAACCTAAT+TGG + chr2_1:77108359-77108378 None:intergenic 20.0%
!! ATAGACTATAAATAATAGGT+AGG + chr2_1:77110120-77110139 None:intergenic 20.0%
!! GATGATAGACTATAAATAAT+AGG + chr2_1:77110124-77110143 None:intergenic 20.0%
!! TGATGAATCTATATGAATAA+TGG + chr2_1:77111135-77111154 None:intergenic 20.0%
!! AAATGCAATTATGATTATAC+TGG + chr2_1:77111509-77111528 None:intergenic 20.0%
!! GTCAAACTTTGAATTATAAA+TGG - chr2_1:77112278-77112297 Msa0226590:intron 20.0%
!!! TGTTATTTTAAAACCTAAGA+TGG + chr2_1:77112427-77112446 None:intergenic 20.0%
!! TTAAAATAACACATATTTGG+TGG - chr2_1:77112436-77112455 Msa0226590:intron 20.0%
!!! CGTACATATATGAAATTTTA+TGG - chr2_1:77112654-77112673 Msa0226590:intron 20.0%
!!! ATTTTATGGAAACACTATTT+TGG - chr2_1:77112668-77112687 Msa0226590:intron 20.0%
!!! TTTTATGGAAACACTATTTT+GGG - chr2_1:77112669-77112688 Msa0226590:intron 20.0%
!! AATAGGACTAATAAATAAAC+GGG + chr2_1:77112864-77112883 None:intergenic 20.0%
!! AAGAACAAACCAATAAAAAT+AGG + chr2_1:77112881-77112900 None:intergenic 20.0%
!! TTGGAAATAAAATTTCATAG+AGG + chr2_1:77113093-77113112 None:intergenic 20.0%
!!! TTTTTACTGTTATTTACAGA+AGG - chr2_1:77113115-77113134 Msa0226590:intron 20.0%
!!! TTAGTTCTGAATCTTAATTA+GGG + chr2_1:77113141-77113160 None:intergenic 20.0%
!! AGTTATGTCAAAATTAAATC+AGG - chr2_1:77113822-77113841 Msa0226590:five_prime_UTR 20.0%
!! AAAATTAAATCAGGACTATA+CGG - chr2_1:77113831-77113850 Msa0226590:five_prime_UTR 20.0%
! AACATTGTGAAACACAAATT+GGG + chr2_1:77108735-77108754 None:intergenic 25.0%
! AATAACACAGAACAAGAAAA+AGG + chr2_1:77108906-77108925 None:intergenic 25.0%
! ATTTCTAATTGAAACATGTG+TGG + chr2_1:77109111-77109130 None:intergenic 25.0%
!! TTAAGTTGTTTAACCAAACA+GGG + chr2_1:77109161-77109180 None:intergenic 25.0%
!! ATTAAGTTGTTTAACCAAAC+AGG + chr2_1:77109162-77109181 None:intergenic 25.0%
! TGTATAACATAAAGGATGTT+AGG + chr2_1:77109811-77109830 None:intergenic 25.0%
! ATATGAATCAAATATGTTGC+TGG - chr2_1:77109945-77109964 Msa0226590:intron 25.0%
! ATAGATACTAGATCAAAATG+TGG - chr2_1:77109980-77109999 Msa0226590:intron 25.0%
! CTTGAATACATTGAATGTAA+TGG + chr2_1:77110035-77110054 None:intergenic 25.0%
!!! ATTTACTTTGGTTTTGGATA+GGG + chr2_1:77110084-77110103 None:intergenic 25.0%
! GAAGTATAAATAGCAGATAT+AGG + chr2_1:77110460-77110479 None:intergenic 25.0%
!!! TGCTATTTATACTTCACTTT+TGG - chr2_1:77110465-77110484 Msa0226590:CDS 25.0%
!!! TACTTCACTTTTGGTATTTA+AGG - chr2_1:77110474-77110493 Msa0226590:CDS 25.0%
! TGTAAGACATAGAAAATGTA+TGG - chr2_1:77110517-77110536 Msa0226590:CDS 25.0%
!!! GTTCTATAAATTAGGTTGAA+AGG - chr2_1:77110594-77110613 Msa0226590:intron 25.0%
!! TAATGATTATACTGTTGCTT+TGG + chr2_1:77110819-77110838 None:intergenic 25.0%
!! TTTACTATTTTGTAGATGTG+CGG - chr2_1:77110848-77110867 Msa0226590:intron 25.0%
!!! ATAATGGAGCTTTTATTTAC+AGG + chr2_1:77111119-77111138 None:intergenic 25.0%
! TCACTCACAAAAATATAGAT+TGG + chr2_1:77111371-77111390 None:intergenic 25.0%
! GAAATTCTTTCCTTTATACT+GGG - chr2_1:77111408-77111427 Msa0226590:intron 25.0%
! AACATCACTTTATCAACAAA+AGG + chr2_1:77111446-77111465 None:intergenic 25.0%
! ATAAAGTGATGTTGATCTTA+TGG - chr2_1:77111453-77111472 Msa0226590:intron 25.0%
!! ATAATTGCATTTTTCTGTCT+AGG - chr2_1:77111517-77111536 Msa0226590:intron 25.0%
! ACTGAAATTAGGAAGATTAA+GGG - chr2_1:77111990-77112009 Msa0226590:intron 25.0%
! TTACAGTAAAATGGATATCA+GGG + chr2_1:77112021-77112040 None:intergenic 25.0%
! TTTACAGTAAAATGGATATC+AGG + chr2_1:77112022-77112041 None:intergenic 25.0%
! CATTACTGTTTACAGTAAAA+TGG + chr2_1:77112030-77112049 None:intergenic 25.0%
! ATAGGCATTTCATATATACT+TGG + chr2_1:77112172-77112191 None:intergenic 25.0%
! TTAGTGTACTATGTTATCAT+AGG + chr2_1:77112190-77112209 None:intergenic 25.0%
! GCATTAGAAATATAATCATG+CGG - chr2_1:77112215-77112234 Msa0226590:intron 25.0%
! CATTAGAAATATAATCATGC+GGG - chr2_1:77112216-77112235 Msa0226590:intron 25.0%
! ATTAGAAATATAATCATGCG+GGG - chr2_1:77112217-77112236 Msa0226590:intron 25.0%
! ATTGTATAATGATTGTTCAC+AGG - chr2_1:77112358-77112377 Msa0226590:intron 25.0%
! ATAAAATTTCATAGAGGATC+AGG + chr2_1:77113087-77113106 None:intergenic 25.0%
!!! GTTAGTTCTGAATCTTAATT+AGG + chr2_1:77113142-77113161 None:intergenic 25.0%
! ATTAAGATTCAGAACTAACT+TGG - chr2_1:77113143-77113162 Msa0226590:intron 25.0%
!! ACAGAAATCTCAAATTTGTT+GGG + chr2_1:77113245-77113264 None:intergenic 25.0%
!! TTTCAAACTAGCAAATTTTG+CGG + chr2_1:77113673-77113692 None:intergenic 25.0%
! GACATTTTCGCGAAAAAAAT+TGG + chr2_1:77108535-77108554 None:intergenic 30.0%
ACATTGTGAAACACAAATTG+GGG + chr2_1:77108734-77108753 None:intergenic 30.0%
CAACATTGTGAAACACAAAT+TGG + chr2_1:77108736-77108755 None:intergenic 30.0%
!! ATTTTTCAGCATTCGAAGAA+TGG - chr2_1:77108764-77108783 Msa0226590:CDS 30.0%
!! TTTTTCAGCATTCGAAGAAT+GGG - chr2_1:77108765-77108784 Msa0226590:CDS 30.0%
ATTGAATGTAATTACACCTG+CGG - chr2_1:77109065-77109084 Msa0226590:intron 30.0%
AACCATTGCATTAAACACAT+GGG + chr2_1:77109402-77109421 None:intergenic 30.0%
AAACCATTGCATTAAACACA+TGG + chr2_1:77109403-77109422 None:intergenic 30.0%
AGAACAGCAACTATCAAAAT+TGG + chr2_1:77109442-77109461 None:intergenic 30.0%
! TTGCTGTTCTTAGTGATTTA+AGG - chr2_1:77109452-77109471 Msa0226590:intron 30.0%
GAAGACAATATCGAAACAAT+GGG + chr2_1:77109633-77109652 None:intergenic 30.0%
AGAAGACAATATCGAAACAA+TGG + chr2_1:77109634-77109653 None:intergenic 30.0%
!!! TTGTTTTAGTTGTTTGTGCT+TGG - chr2_1:77109674-77109693 Msa0226590:CDS 30.0%
TCATAAATGCCATACACATT+AGG + chr2_1:77109715-77109734 None:intergenic 30.0%
TGTTAGCATAGATTTGAGAA+AGG - chr2_1:77109777-77109796 Msa0226590:intron 30.0%
CTACGAACTGTATAACATAA+AGG + chr2_1:77109819-77109838 None:intergenic 30.0%
!! GTCAACAGTATTTTTGTGTA+TGG - chr2_1:77109847-77109866 Msa0226590:intron 30.0%
!!! GATTTACTTTGGTTTTGGAT+AGG + chr2_1:77110085-77110104 None:intergenic 30.0%
AGTCTTCGTATAATTTCTCA+TGG + chr2_1:77110215-77110234 None:intergenic 30.0%
CTGTTTCAATGAAACAATAC+AGG + chr2_1:77110256-77110275 None:intergenic 30.0%
ATAATTGTACATGCCATGTA+GGG + chr2_1:77110431-77110450 None:intergenic 30.0%
!! TCACTTTTGGTATTTAAGGT+AGG - chr2_1:77110478-77110497 Msa0226590:CDS 30.0%
GCTAGAGAGTTCTATAAATT+AGG - chr2_1:77110586-77110605 Msa0226590:intron 30.0%
CAGTACTCACTATTCATATA+CGG - chr2_1:77110646-77110665 Msa0226590:intron 30.0%
TACGGATTCTAAACTTCTAA+TGG - chr2_1:77110664-77110683 Msa0226590:intron 30.0%
! TGCTTTGGATAAAATCAAAC+AGG + chr2_1:77110804-77110823 None:intergenic 30.0%
ATGTATCAACTTCTTGATTC+TGG - chr2_1:77110880-77110899 Msa0226590:intron 30.0%
TGTATCAACTTCTTGATTCT+GGG - chr2_1:77110881-77110900 Msa0226590:intron 30.0%
TTCTTGATTCTGGGTTTATT+GGG - chr2_1:77110890-77110909 Msa0226590:intron 30.0%
! GCTTTAAACTGTATTCAGAT+AGG - chr2_1:77111020-77111039 Msa0226590:CDS 30.0%
!! TCTTGTTGTTAAATTCTCTG+AGG + chr2_1:77111165-77111184 None:intergenic 30.0%
GAGAATTTAACAACAAGATC+TGG - chr2_1:77111167-77111186 Msa0226590:intron 30.0%
AACTGTTGTCTATTCTTCAT+GGG + chr2_1:77111292-77111311 None:intergenic 30.0%
AAACTGTTGTCTATTCTTCA+TGG + chr2_1:77111293-77111312 None:intergenic 30.0%
TTACATTTGAATGCAGAACA+TGG - chr2_1:77111325-77111344 Msa0226590:intron 30.0%
AGTGAAGTTCTTAAAGATCA+GGG - chr2_1:77111386-77111405 Msa0226590:intron 30.0%
GGAAATTCTTTCCTTTATAC+TGG - chr2_1:77111407-77111426 Msa0226590:intron 30.0%
GCAATTATGATTATACTGGT+GGG + chr2_1:77111505-77111524 None:intergenic 30.0%
TGCAATTATGATTATACTGG+TGG + chr2_1:77111506-77111525 None:intergenic 30.0%
! AATTGTAATTTTTCCTAGGG+TGG - chr2_1:77111591-77111610 Msa0226590:intron 30.0%
! ATTGTAATTTTTCCTAGGGT+GGG - chr2_1:77111592-77111611 Msa0226590:intron 30.0%
ATACTTTCTGACATATCCAT+GGG + chr2_1:77111735-77111754 None:intergenic 30.0%
TGTTTATCAACCGACAATTT+AGG - chr2_1:77111829-77111848 Msa0226590:intron 30.0%
AAAAAACACGCCTAAATTGT+CGG + chr2_1:77111842-77111861 None:intergenic 30.0%
TTCCTAATTTCAGTCTCTAA+TGG + chr2_1:77111984-77112003 None:intergenic 30.0%
GACTGAAATTAGGAAGATTA+AGG - chr2_1:77111989-77112008 Msa0226590:intron 30.0%
CTGAAATTAGGAAGATTAAG+GGG - chr2_1:77111991-77112010 Msa0226590:intron 30.0%
TTAGAAATATAATCATGCGG+GGG - chr2_1:77112218-77112237 Msa0226590:intron 30.0%
! ACCATGTCTAATCTTTTATG+AGG - chr2_1:77112384-77112403 Msa0226590:intron 30.0%
ACCTCATAAAAGATTAGACA+TGG + chr2_1:77112388-77112407 None:intergenic 30.0%
!! ATCAAGGTTGATAAAAGACA+AGG + chr2_1:77112512-77112531 None:intergenic 30.0%
ATGTACTATTTGAAGAGGAA+CGG - chr2_1:77112563-77112582 Msa0226590:CDS 30.0%
AAAGTACAAACAAATGGCAT+AGG + chr2_1:77112736-77112755 None:intergenic 30.0%
CCATTTGTTTGTACTTTGTA+GGG - chr2_1:77112739-77112758 Msa0226590:intron 30.0%
GACTAAGAGAGAATGAAATT+CGG - chr2_1:77112965-77112984 Msa0226590:intron 30.0%
ACTAAGAGAGAATGAAATTC+GGG - chr2_1:77112966-77112985 Msa0226590:intron 30.0%
! AATAACTTGTGAGCATGTTT+AGG + chr2_1:77113216-77113235 None:intergenic 30.0%
GACAGAAATCTCAAATTTGT+TGG + chr2_1:77113246-77113265 None:intergenic 30.0%
TAACAATGTTGAATTCTCGT+TGG - chr2_1:77113558-77113577 Msa0226590:CDS 30.0%
ACATAGAATGTACATGATAG+CGG - chr2_1:77113637-77113656 Msa0226590:five_prime_UTR 30.0%
!!! CAGTGAAATATTTTGGTTGT+TGG - chr2_1:77113701-77113720 Msa0226590:five_prime_UTR 30.0%
TTGTTCCTCCAAGAATAAAA+TGG + chr2_1:77113765-77113784 None:intergenic 30.0%
AGTTATCTCAATGACATTCA+TGG - chr2_1:77113790-77113809 Msa0226590:five_prime_UTR 30.0%
TGAAAATGTCCGAAGAAGTT+TGG - chr2_1:77108566-77108585 Msa0226590:three_prime_UTR 35.0%
GCATGTTAACCAAACTTCTT+CGG + chr2_1:77108578-77108597 None:intergenic 35.0%
TACTGAAACCGAAGAGATTA+TGG - chr2_1:77108615-77108634 Msa0226590:CDS 35.0%
ACTGAAACCGAAGAGATTAT+GGG - chr2_1:77108616-77108635 Msa0226590:CDS 35.0%
AAGAAGACCCATAATCTCTT+CGG + chr2_1:77108626-77108645 None:intergenic 35.0%
GGGGATTATTATACTATACC+TGG + chr2_1:77108660-77108679 None:intergenic 35.0%
TGAAACTAATCCTGAACAGT+TGG - chr2_1:77108853-77108872 Msa0226590:intron 35.0%
TGCTTCATAAGTGATATGTG+AGG + chr2_1:77108984-77109003 None:intergenic 35.0%
GAGAGCTTATGAAAATAAGC+TGG - chr2_1:77109295-77109314 Msa0226590:intron 35.0%
! GCTTATTTGAGTTTACCTAC+CGG + chr2_1:77109366-77109385 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr2_1:77109376-77109395 Msa0226590:CDS 35.0%
CATTCTGTGCTATGAAGTTA+AGG + chr2_1:77109503-77109522 None:intergenic 35.0%
CAGTAATATGAGGATGTGAA+TGG + chr2_1:77109567-77109586 None:intergenic 35.0%
AATATCGAAACAATGGGAGA+CGG + chr2_1:77109627-77109646 None:intergenic 35.0%
TTAGTTGTTTGTGCTTGGAT+TGG - chr2_1:77109679-77109698 Msa0226590:intron 35.0%
GAACTGAATCCTAATGTGTA+TGG - chr2_1:77109703-77109722 Msa0226590:intron 35.0%
CCTTCAATTGATGTTGAAGT+TGG + chr2_1:77109906-77109925 None:intergenic 35.0%
CCAACTTCAACATCAATTGA+AGG - chr2_1:77109903-77109922 Msa0226590:intron 35.0%
AATCAAATATGTTGCTGGAG+AGG - chr2_1:77109950-77109969 Msa0226590:intron 35.0%
TTCAATGTATTCAAGCATCC+AGG - chr2_1:77110040-77110059 Msa0226590:intron 35.0%
!!! TTTGGATAGGGTTTTAGAGT+GGG + chr2_1:77110072-77110091 None:intergenic 35.0%
!!! TTTTGGATAGGGTTTTAGAG+TGG + chr2_1:77110073-77110092 None:intergenic 35.0%
!! CGACAGATTTACTTTGGTTT+TGG + chr2_1:77110090-77110109 None:intergenic 35.0%
TCTAACTAACTCACAGACAA+AGG - chr2_1:77110152-77110171 Msa0226590:intron 35.0%
CTAACTAACTCACAGACAAA+GGG - chr2_1:77110153-77110172 Msa0226590:intron 35.0%
TAACTAACTCACAGACAAAG+GGG - chr2_1:77110154-77110173 Msa0226590:intron 35.0%
ATTTGCATCAGCCAAATGAT+AGG + chr2_1:77110184-77110203 None:intergenic 35.0%
GGGTATTATTCAGTGATTTG+TGG + chr2_1:77110363-77110382 None:intergenic 35.0%
AAAGGTTACAGTAGAATGCA+GGG + chr2_1:77110383-77110402 None:intergenic 35.0%
TCTACTGTAACCTTTCTGAA+TGG - chr2_1:77110388-77110407 Msa0226590:CDS 35.0%
!! TCAAGTTGAACCATTCAGAA+AGG + chr2_1:77110401-77110420 None:intergenic 35.0%
GATAATTGTACATGCCATGT+AGG + chr2_1:77110432-77110451 None:intergenic 35.0%
!! ATCACAAACTTTTGAGGAAG+AGG + chr2_1:77110695-77110714 None:intergenic 35.0%
TTCCTCAAAAGTTTGTGATC+TGG - chr2_1:77110696-77110715 Msa0226590:intron 35.0%
! AACCAGATCACAAACTTTTG+AGG + chr2_1:77110701-77110720 None:intergenic 35.0%
CTTCTTGATTCTGGGTTTAT+TGG - chr2_1:77110889-77110908 Msa0226590:intron 35.0%
TTACAACGAAGATGCAAACA+AGG - chr2_1:77110927-77110946 Msa0226590:CDS 35.0%
!! CTTTTATTTACAGGAGACAG+AGG + chr2_1:77111110-77111129 None:intergenic 35.0%
! GTTAAATTCTCTGAGGAACT+TGG + chr2_1:77111158-77111177 None:intergenic 35.0%
AACAAGATCTGGTTACTTCA+AGG - chr2_1:77111178-77111197 Msa0226590:intron 35.0%
ACAAGATCTGGTTACTTCAA+GGG - chr2_1:77111179-77111198 Msa0226590:intron 35.0%
ACTGTTGTCTATTCTTCATG+GGG + chr2_1:77111291-77111310 None:intergenic 35.0%
ATTTGAATGCAGAACATGGT+GGG - chr2_1:77111329-77111348 Msa0226590:intron 35.0%
GAGTGAAGTTCTTAAAGATC+AGG - chr2_1:77111385-77111404 Msa0226590:intron 35.0%
!! TCCTTTATACTGGGTTTTGT+AGG - chr2_1:77111417-77111436 Msa0226590:intron 35.0%
GATCTTATGGAAATGTGTTC+AGG - chr2_1:77111466-77111485 Msa0226590:intron 35.0%
! TTGTAATTTTTCCTAGGGTG+GGG - chr2_1:77111593-77111612 Msa0226590:intron 35.0%
! TTTTACACTCCCTAGATAGT+TGG + chr2_1:77111661-77111680 None:intergenic 35.0%
! TATCTAGGGAGTGTAAAAGA+TGG - chr2_1:77111663-77111682 Msa0226590:intron 35.0%
CATACTTTCTGACATATCCA+TGG + chr2_1:77111736-77111755 None:intergenic 35.0%
!!! GACAATTTAGGCGTGTTTTT+TGG - chr2_1:77111841-77111860 Msa0226590:intron 35.0%
!!! TTAGGCGTGTTTTTTGGATT+TGG - chr2_1:77111847-77111866 Msa0226590:intron 35.0%
TAGTATATAAAGCTCAACCC+AGG - chr2_1:77111918-77111937 Msa0226590:intron 35.0%
TGCCATTAGAGACTGAAATT+AGG - chr2_1:77111979-77111998 Msa0226590:intron 35.0%
AAATTAGGAAGATTAAGGGG+AGG - chr2_1:77111994-77112013 Msa0226590:intron 35.0%
AATTAGGAAGATTAAGGGGA+GGG - chr2_1:77111995-77112014 Msa0226590:intron 35.0%
AAGGAAAGCTTCATAAGCAA+AGG + chr2_1:77112127-77112146 None:intergenic 35.0%
TTTGCTTATGAAGCTTTCCT+TGG - chr2_1:77112126-77112145 Msa0226590:intron 35.0%
GGCATTTCATATATACTTGG+TGG + chr2_1:77112169-77112188 None:intergenic 35.0%
TAGAAATATAATCATGCGGG+GGG - chr2_1:77112219-77112238 Msa0226590:intron 35.0%
CAAGATAGTTTCTCCATCTT+AGG - chr2_1:77112411-77112430 Msa0226590:intron 35.0%
TGGTGCAGAGTATATTAGAA+AGG - chr2_1:77112462-77112481 Msa0226590:intron 35.0%
!! AGGTTGATAAAAGACAAGGA+TGG + chr2_1:77112508-77112527 None:intergenic 35.0%
AGATCCTTGTATGATGATAG+CGG + chr2_1:77112538-77112557 None:intergenic 35.0%
GCAACATGTACTATTTGAAG+AGG - chr2_1:77112558-77112577 Msa0226590:CDS 35.0%
AAGCCATCTTGCAAAATACA+AGG - chr2_1:77112599-77112618 Msa0226590:CDS 35.0%
GCCATTTGTTTGTACTTTGT+AGG - chr2_1:77112738-77112757 Msa0226590:intron 35.0%
CCCTACAAAGTACAAACAAA+TGG + chr2_1:77112742-77112761 None:intergenic 35.0%
TTGTTTGTACTTTGTAGGGA+TGG - chr2_1:77112743-77112762 Msa0226590:intron 35.0%
TGTTTGTACTTTGTAGGGAT+GGG - chr2_1:77112744-77112763 Msa0226590:intron 35.0%
ATACTCAATCAACTTGCACA+AGG + chr2_1:77112819-77112838 None:intergenic 35.0%
!! TGTGCAAGTTGATTGAGTAT+TGG - chr2_1:77112819-77112838 Msa0226590:intron 35.0%
CTCTTAAGATACTGACAACA+TGG + chr2_1:77113037-77113056 None:intergenic 35.0%
CATGTTGTCAGTATCTTAAG+AGG - chr2_1:77113035-77113054 Msa0226590:intron 35.0%
TTGTCAGTATCTTAAGAGGT+TGG - chr2_1:77113039-77113058 Msa0226590:intron 35.0%
ACATAGGACATGATAGAAGA+GGG + chr2_1:77113171-77113190 None:intergenic 35.0%
TACATAGGACATGATAGAAG+AGG + chr2_1:77113172-77113191 None:intergenic 35.0%
! ATTGTTATCCTTTTCTGCTC+CGG + chr2_1:77113545-77113564 None:intergenic 35.0%
! CGATGCTCAGTGAAATATTT+TGG - chr2_1:77113694-77113713 Msa0226590:five_prime_UTR 35.0%
!! TGACTTGGCCATTTTATTCT+TGG - chr2_1:77113754-77113773 Msa0226590:five_prime_UTR 35.0%
ATCTCAATGACATTCATGGT+TGG - chr2_1:77113794-77113813 Msa0226590:five_prime_UTR 35.0%
! TGTTTCTGACTAGACAGTTG+AGG - chr2_1:77108408-77108427 Msa0226590:three_prime_UTR 40.0%
TAGACAGTTGAGGTTGAAGA+AGG - chr2_1:77108418-77108437 Msa0226590:three_prime_UTR 40.0%
GAGATTATGGGTCTTCTTCT+TGG - chr2_1:77108628-77108647 Msa0226590:CDS 40.0%
! GAGTGTGACTGCATTGATAT+GGG - chr2_1:77108787-77108806 Msa0226590:CDS 40.0%
! AGTGTGACTGCATTGATATG+GGG - chr2_1:77108788-77108807 Msa0226590:CDS 40.0%
TCACTTATGAAGCAGAGACA+CGG - chr2_1:77108990-77109009 Msa0226590:intron 40.0%
TTCTGCAGAGCATATCACTT+AGG - chr2_1:77109135-77109154 Msa0226590:intron 40.0%
ATTAAACACATGGGCCTGTT+TGG + chr2_1:77109393-77109412 None:intergenic 40.0%
CACAGAATGACTGTTACAAC+TGG - chr2_1:77109514-77109533 Msa0226590:intron 40.0%
TTACAACTGGAAGAACAACG+AGG - chr2_1:77109527-77109546 Msa0226590:intron 40.0%
TACAACTGGAAGAACAACGA+GGG - chr2_1:77109528-77109547 Msa0226590:intron 40.0%
AAGTACATACCGACATGTGA+AGG + chr2_1:77109595-77109614 None:intergenic 40.0%
CACATGTCGGTATGTACTTT+CGG - chr2_1:77109596-77109615 Msa0226590:CDS 40.0%
ACATGTCGGTATGTACTTTC+GGG - chr2_1:77109597-77109616 Msa0226590:CDS 40.0%
ATATCGAAACAATGGGAGAC+GGG + chr2_1:77109626-77109645 None:intergenic 40.0%
!!! TTTTAGAGTGGGAGATAACC+TGG + chr2_1:77110061-77110080 None:intergenic 40.0%
AACTAACTCACAGACAAAGG+GGG - chr2_1:77110155-77110174 Msa0226590:intron 40.0%
AAAGGGGGTTTCCTATCATT+TGG - chr2_1:77110170-77110189 Msa0226590:intron 40.0%
GAAAGGTTACAGTAGAATGC+AGG + chr2_1:77110384-77110403 None:intergenic 40.0%
!! AGGTTGAAAGGCTTTTTAGC+AGG - chr2_1:77110606-77110625 Msa0226590:intron 40.0%
!! TGCTTGTTATCACGTTGGAT+AGG - chr2_1:77110738-77110757 Msa0226590:intron 40.0%
AACGAAGATGCAAACAAGGT+TGG - chr2_1:77110931-77110950 Msa0226590:CDS 40.0%
ATTGCTTTCCAGTCATCTGA+TGG - chr2_1:77111056-77111075 Msa0226590:CDS 40.0%
! TTTACAGGAGACAGAGGTAT+GGG + chr2_1:77111104-77111123 None:intergenic 40.0%
ATTTACAGGAGACAGAGGTA+TGG + chr2_1:77111105-77111124 None:intergenic 40.0%
CATTTGAATGCAGAACATGG+TGG - chr2_1:77111328-77111347 Msa0226590:intron 40.0%
GCCTACAAAACCCAGTATAA+AGG + chr2_1:77111421-77111440 None:intergenic 40.0%
! TGTAATTTTTCCTAGGGTGG+GGG - chr2_1:77111594-77111613 Msa0226590:intron 40.0%
! GGATATGTCAGAAAGTATGC+AGG - chr2_1:77111737-77111756 Msa0226590:intron 40.0%
ACCTCATGTCCATATTTGAG+CGG + chr2_1:77111773-77111792 None:intergenic 40.0%
TGACCTGGTGATAAATGTCT+GGG - chr2_1:77111941-77111960 Msa0226590:intron 40.0%
!! TCATACTGAGGAGCATTCTA+GGG + chr2_1:77112096-77112115 None:intergenic 40.0%
!! ATCATACTGAGGAGCATTCT+AGG + chr2_1:77112097-77112116 None:intergenic 40.0%
! ATATACTTGGTGGAACAGTG+TGG + chr2_1:77112159-77112178 None:intergenic 40.0%
! TAACACATATTTGGTGGCAG+TGG - chr2_1:77112442-77112461 Msa0226590:intron 40.0%
! CCACCTTGTATTTTGCAAGA+TGG + chr2_1:77112605-77112624 None:intergenic 40.0%
CCATCTTGCAAAATACAAGG+TGG - chr2_1:77112602-77112621 Msa0226590:CDS 40.0%
! CTACATCTAAAGCGCTACAT+AGG + chr2_1:77113187-77113206 None:intergenic 40.0%
GATGAACTTCCTCGATGTAT+GGG + chr2_1:77113453-77113472 None:intergenic 40.0%
AGATGAACTTCCTCGATGTA+TGG + chr2_1:77113454-77113473 None:intergenic 40.0%
CAGAGTTCAAGTGAATCTCT+TGG - chr2_1:77113492-77113511 Msa0226590:intron 40.0%
! CAAACTAGCAAATTTTGCGG+AGG + chr2_1:77113670-77113689 None:intergenic 40.0%
TACCTGTGTACAATTGTGAG+TGG - chr2_1:77113731-77113750 Msa0226590:five_prime_UTR 40.0%
TACAATTGTGAGTGGTGACT+TGG - chr2_1:77113739-77113758 Msa0226590:five_prime_UTR 40.0%
!! CTTGGCCATTTTATTCTTGG+AGG - chr2_1:77113757-77113776 Msa0226590:five_prime_UTR 40.0%
ACAGTTGAGGTTGAAGAAGG+AGG - chr2_1:77108421-77108440 Msa0226590:three_prime_UTR 45.0%
TCTTCTTCTTGGCGATATCC+AGG - chr2_1:77108639-77108658 Msa0226590:CDS 45.0%
! GGAGTGTGACTGCATTGATA+TGG - chr2_1:77108786-77108805 Msa0226590:CDS 45.0%
CACTTATGAAGCAGAGACAC+GGG - chr2_1:77108991-77109010 Msa0226590:intron 45.0%
ACTTATGAAGCAGAGACACG+GGG - chr2_1:77108992-77109011 Msa0226590:intron 45.0%
TGGCATGTTGACACAAGTAG+TGG - chr2_1:77109023-77109042 Msa0226590:intron 45.0%
CATATCACTTAGGCCCTGTT+TGG - chr2_1:77109145-77109164 Msa0226590:intron 45.0%
GTTCTCACAACTGCTTAAGC+CGG - chr2_1:77109344-77109363 Msa0226590:CDS 45.0%
GGCCCATGTGTTTAATGCAA+TGG - chr2_1:77109397-77109416 Msa0226590:intron 45.0%
GAAGGCAGGACAGTAATATG+AGG + chr2_1:77109577-77109596 None:intergenic 45.0%
CGTGCTCGACAGATTTACTT+TGG + chr2_1:77110096-77110115 None:intergenic 45.0%
!! GATTTGTGGAGAAGTGTCTG+AGG + chr2_1:77110349-77110368 None:intergenic 45.0%
!! CAGCATGCTTGTTATCACGT+TGG - chr2_1:77110733-77110752 Msa0226590:intron 45.0%
! TTTTGTAGATGTGCGGACTC+AGG - chr2_1:77110855-77110874 Msa0226590:intron 45.0%
TCTGCTTTCCATCAGATGAC+TGG + chr2_1:77111067-77111086 None:intergenic 45.0%
GAAATGTGTTCAGGCCCTAA+AGG - chr2_1:77111475-77111494 Msa0226590:intron 45.0%
TACTGGTGGGACATCCTTTA+GGG + chr2_1:77111492-77111511 None:intergenic 45.0%
ATACTGGTGGGACATCCTTT+AGG + chr2_1:77111493-77111512 None:intergenic 45.0%
! GTAATTTTTCCTAGGGTGGG+GGG - chr2_1:77111595-77111614 Msa0226590:intron 45.0%
AATGCCGATGCCAACTATCT+AGG - chr2_1:77111648-77111667 Msa0226590:intron 45.0%
ATGCCGATGCCAACTATCTA+GGG - chr2_1:77111649-77111668 Msa0226590:intron 45.0%
ACTCCCTAGATAGTTGGCAT+CGG + chr2_1:77111655-77111674 None:intergenic 45.0%
AGCTATGCACCGCTCAAATA+TGG - chr2_1:77111761-77111780 Msa0226590:intron 45.0%
ACCGCTCAAATATGGACATG+AGG - chr2_1:77111769-77111788 Msa0226590:intron 45.0%
ATCTTGTCCCCTTGCACAAA+AGG - chr2_1:77111874-77111893 Msa0226590:intron 45.0%
TCTTGTCCCCTTGCACAAAA+GGG - chr2_1:77111875-77111894 Msa0226590:intron 45.0%
CATTTATCACCAGGTCACCT+GGG + chr2_1:77111938-77111957 None:intergenic 45.0%
ACATTTATCACCAGGTCACC+TGG + chr2_1:77111939-77111958 None:intergenic 45.0%
GTGACCTGGTGATAAATGTC+TGG - chr2_1:77111940-77111959 Msa0226590:intron 45.0%
CTACCCAGACATTTATCACC+AGG + chr2_1:77111947-77111966 None:intergenic 45.0%
AAGGCAGCAGAATCATACTG+AGG + chr2_1:77112108-77112127 None:intergenic 45.0%
AATATAATCATGCGGGGGGA+AGG - chr2_1:77112223-77112242 Msa0226590:intron 45.0%
!! ATGATGATAGCGGCGAATCA+AGG + chr2_1:77112528-77112547 None:intergenic 45.0%
TTCGCCGCTATCATCATACA+AGG - chr2_1:77112531-77112550 Msa0226590:intron 45.0%
ACACCACACTTCGACTTATC+AGG - chr2_1:77112790-77112809 Msa0226590:intron 45.0%
AAGCCTGATAAGTCGAAGTG+TGG + chr2_1:77112796-77112815 None:intergenic 45.0%
!! TCTTGAAGTGCGTTGATTGC+AGG + chr2_1:77112943-77112962 None:intergenic 45.0%
! TAAACTTGCTTCACTCCCTC+TGG + chr2_1:77113388-77113407 None:intergenic 45.0%
AGAGGGAGTGAAGCAAGTTT+AGG - chr2_1:77113387-77113406 Msa0226590:intron 45.0%
TATGGGAGATGCAACTTGAC+GGG + chr2_1:77113436-77113455 None:intergenic 45.0%
GTATGGGAGATGCAACTTGA+CGG + chr2_1:77113437-77113456 None:intergenic 45.0%
! TCAAAGAGTGTAGCTAGTCC+TGG - chr2_1:77113516-77113535 Msa0226590:CDS 45.0%
CACCACTCACAATTGTACAC+AGG + chr2_1:77113736-77113755 None:intergenic 45.0%
! CGTCGATCAGACCTTGTTTG+AGG + chr2_1:77108821-77108840 None:intergenic 50.0%
TCACAACTGCTTAAGCCGGT+AGG - chr2_1:77109348-77109367 Msa0226590:CDS 50.0%
ACACATGGGCCTGTTTGGAT+TGG + chr2_1:77109388-77109407 None:intergenic 50.0%
GGAAGAACAACGAGGGTGAT+AGG - chr2_1:77109535-77109554 Msa0226590:intron 50.0%
ACTGTCCTGCCTTCACATGT+CGG - chr2_1:77109583-77109602 Msa0226590:CDS 50.0%
ACATACCGACATGTGAAGGC+AGG + chr2_1:77109591-77109610 None:intergenic 50.0%
ACTTGAGCACATGCCCTACA+TGG - chr2_1:77110415-77110434 Msa0226590:CDS 50.0%
AATCACCAGTGTCCTGCTCT+GGG + chr2_1:77111211-77111230 None:intergenic 50.0%
! ACTGGTGATTCGAGAAGTGC+TGG - chr2_1:77111221-77111240 Msa0226590:CDS 50.0%
!! GAGAAGTGCTGGTGCTAGTA+AGG - chr2_1:77111232-77111251 Msa0226590:CDS 50.0%
TGGGGGGAGATCTTCAGAAT+TGG - chr2_1:77111611-77111630 Msa0226590:intron 50.0%
GGGGGGAGATCTTCAGAATT+GGG - chr2_1:77111612-77111631 Msa0226590:intron 50.0%
GGGGGAGATCTTCAGAATTG+GGG - chr2_1:77111613-77111632 Msa0226590:intron 50.0%
!! CATCGCAGTTGATGATCCCA+TGG - chr2_1:77111716-77111735 Msa0226590:intron 50.0%
! TGTGCTCCCTTTTGTGCAAG+GGG + chr2_1:77111884-77111903 None:intergenic 50.0%
! CTGTGCTCCCTTTTGTGCAA+GGG + chr2_1:77111885-77111904 None:intergenic 50.0%
! ACTGTGCTCCCTTTTGTGCA+AGG + chr2_1:77111886-77111905 None:intergenic 50.0%
! TTGCACAAAAGGGAGCACAG+TGG - chr2_1:77111885-77111904 Msa0226590:intron 50.0%
!! TACTGAGGAGCATTCTAGGG+AGG + chr2_1:77112093-77112112 None:intergenic 50.0%
AACAGTGTGGAACTGTGCCA+AGG + chr2_1:77112146-77112165 None:intergenic 50.0%
AAGGATGGCAGCACATGAAG+GGG + chr2_1:77112493-77112512 None:intergenic 50.0%
CAAGGATGGCAGCACATGAA+GGG + chr2_1:77112494-77112513 None:intergenic 50.0%
ACAAGGATGGCAGCACATGA+AGG + chr2_1:77112495-77112514 None:intergenic 50.0%
GTGTGGTGTATGAAAGCGAG+TGG + chr2_1:77112779-77112798 None:intergenic 50.0%
GAGTGAAGAAGCCAAGAGTC+TGG - chr2_1:77113344-77113363 Msa0226590:CDS 50.0%
TGAAGAAGCCAAGAGTCTGG+AGG - chr2_1:77113347-77113366 Msa0226590:CDS 50.0%
ATGGGAGATGCAACTTGACG+GGG + chr2_1:77113435-77113454 None:intergenic 50.0%
GTTGCATCTCCCATACATCG+AGG - chr2_1:77113441-77113460 Msa0226590:intron 50.0%
CTCTGCGAGTTTCTTTGACG+AGG + chr2_1:77113477-77113496 None:intergenic 50.0%
AGGTTGAAGAAGGAGGCGAG+AGG - chr2_1:77108428-77108447 Msa0226590:three_prime_UTR 55.0%
GGTTGAAGAAGGAGGCGAGA+GGG - chr2_1:77108429-77108448 Msa0226590:three_prime_UTR 55.0%
GGGGTGCATCTCCTCAAACA+AGG - chr2_1:77108807-77108826 Msa0226590:CDS 55.0%
GAAGCAGCAGCCAACTGTTC+AGG + chr2_1:77108866-77108885 None:intergenic 55.0%
CAACACGTGTCTAACACCGC+AGG + chr2_1:77109084-77109103 None:intergenic 55.0%
! CTGCGGTGTTAGACACGTGT+TGG - chr2_1:77109082-77109101 Msa0226590:intron 55.0%
GAACAACGAGGGTGATAGGC+TGG - chr2_1:77109539-77109558 Msa0226590:CDS 55.0%
GAATCACCAGTGTCCTGCTC+TGG + chr2_1:77111212-77111231 None:intergenic 55.0%
AAAGCTCAACCCAGGTGACC+TGG - chr2_1:77111926-77111945 Msa0226590:intron 55.0%
AGAAGCCAAGAGTCTGGAGG+CGG - chr2_1:77113350-77113369 Msa0226590:CDS 55.0%
ACGGGGAGAAGCAACTTGAC+GGG + chr2_1:77113418-77113437 None:intergenic 55.0%
GACGGGGAGAAGCAACTTGA+CGG + chr2_1:77113419-77113438 None:intergenic 55.0%
GTGTAGCTAGTCCTGGTAGC+CGG - chr2_1:77113523-77113542 Msa0226590:CDS 55.0%
CAAGGGAGATAGCCCAGAGC+AGG - chr2_1:77111196-77111215 Msa0226590:intron 60.0%
GATAGCCCAGAGCAGGACAC+TGG - chr2_1:77111203-77111222 Msa0226590:intron 60.0%
TGAAGATCTCCCCCCACCCT+AGG + chr2_1:77111607-77111626 None:intergenic 60.0%
!! TGCGGGGGGAAGGTATTGTG+TGG - chr2_1:77112233-77112252 Msa0226590:intron 60.0%
!! CGGAGGCATCTACGTCCAGA+GGG - chr2_1:77113370-77113389 Msa0226590:intron 60.0%
CGGGGAGAAGCAACTTGACG+GGG + chr2_1:77113417-77113436 None:intergenic 60.0%
! CCTTTTCTGCTCCGGCTACC+AGG + chr2_1:77113537-77113556 None:intergenic 60.0%
CCTGGTAGCCGGAGCAGAAA+AGG - chr2_1:77113534-77113553 Msa0226590:CDS 60.0%
AGAGACACGGGGCACGACAC+TGG - chr2_1:77109003-77109022 Msa0226590:intron 65.0%
AGCCAAGAGTCTGGAGGCGG+AGG - chr2_1:77113353-77113372 Msa0226590:CDS 65.0%
TGCCTCCGCCTCCAGACTCT+TGG + chr2_1:77113358-77113377 None:intergenic 65.0%
!! GCGGAGGCATCTACGTCCAG+AGG - chr2_1:77113369-77113388 Msa0226590:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 77108305 77113854 77108305 ID=Msa0226590;Name=Msa0226590
chr2_1 mRNA 77108305 77113854 77108305 ID=Msa0226590-mRNA-1;Parent=Msa0226590;Name=Msa0226590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=245|0.77|0.7|1|0.77|0.7|10|294|428
chr2_1 exon 77108305 77108826 77108305 ID=Msa0226590-mRNA-1:exon:23412;Parent=Msa0226590-mRNA-1
chr2_1 exon 77109172 77109226 77109172 ID=Msa0226590-mRNA-1:exon:23411;Parent=Msa0226590-mRNA-1
chr2_1 exon 77109334 77109399 77109334 ID=Msa0226590-mRNA-1:exon:23410;Parent=Msa0226590-mRNA-1
chr2_1 exon 77109539 77109697 77109539 ID=Msa0226590-mRNA-1:exon:23409;Parent=Msa0226590-mRNA-1
chr2_1 exon 77110369 77110550 77110369 ID=Msa0226590-mRNA-1:exon:23408;Parent=Msa0226590-mRNA-1
chr2_1 exon 77110906 77111121 77110906 ID=Msa0226590-mRNA-1:exon:23407;Parent=Msa0226590-mRNA-1
chr2_1 exon 77111211 77111296 77111211 ID=Msa0226590-mRNA-1:exon:23406;Parent=Msa0226590-mRNA-1
chr2_1 exon 77112555 77112640 77112555 ID=Msa0226590-mRNA-1:exon:23405;Parent=Msa0226590-mRNA-1
chr2_1 exon 77113289 77113386 77113289 ID=Msa0226590-mRNA-1:exon:23404;Parent=Msa0226590-mRNA-1
chr2_1 exon 77113499 77113854 77113499 ID=Msa0226590-mRNA-1:exon:23403;Parent=Msa0226590-mRNA-1
chr2_1 five_prime_UTR 77113610 77113854 77113610 ID=Msa0226590-mRNA-1:five_prime_utr;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77113499 77113609 77113499 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77113289 77113386 77113289 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77112555 77112640 77112555 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77111211 77111296 77111211 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77110906 77111121 77110906 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77110369 77110550 77110369 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77109539 77109697 77109539 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77109334 77109399 77109334 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77109172 77109226 77109172 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 CDS 77108599 77108826 77108599 ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1
chr2_1 three_prime_UTR 77108305 77108598 77108305 ID=Msa0226590-mRNA-1:three_prime_utr;Parent=Msa0226590-mRNA-1
Gene Sequence

>Msa0226590

ATGTCTCTAACAAGCGTGAAAATGTCCGAAGAAGTTTGGTTAACATGCGCAACTCATGCATTCTCTACTGAAACCGAAGAGATTATGGGTCTTCTTCTTGGCGATATCCAGCATTCGAAGAATGGGAGTGTGACTGCATTGATATGGGGTGCATCTCCTCAAACAAGGTCTGATCGACGAAAAGATCGTGTTGAAACTAATCCTGAACAAATGACTGTTACAACTGGAAGAACAACGAGGGTGATAGGCTGGTACCATTCACATCCTCATATTACTGTCCTGCCTTCACATGTCGATGTGCGGACTCAGGCAATGTATCAACTTCTTGATTCTGGGTTTATTGGGTTGATTTTTTCTTGTTACAACGAAGATGCAAACAAGATAGGAAAAATTCAAGTAATTGCTTTCCAGTCATCTGATGGAAAGCAGAATAGCTTGTCAAGACCCATACCTCTGTCTCCTGTAAATAAAAGCTCCATTATTCATATAGATTCATCACCAAGTTCCTCAGAGAATTTAACAACAAGATCTGGTTACTTCAAGGGAGATAGCCCAGAGCAGGACACTGGTGATTCGAGAAGTGCTGGTGCTAGTAAGGGTGGGGGGAGATCTTCAGAATTGGGGAATTTCTTCGCTAATGCCGATGCCAACTATCTAGGGAGTGTAAAAGATGGAGAAAACTATCATCTCAACAATTCAGACATCATCGCAGTTGATGATCCCATGGATATGTCAGAAAGTATGCAGGAAGCTATGCACCGCTCAAATATGGACATGAGTGGTGCAGAGTATATTAGAAAGGAAATTCCCCTTCATGTGCTGCCATCCTTGTCTTTTATCAACCTTGATTCGCCGCTATCATCATACAAGGATCTGCAACATGTACTATTTGAAGAGGAACGGACAGCATATAATCAAGCCATCTTGCAAAATACAAGGGATGGGAAAGTGCATCCACTCGCTTTCATACACCACACTTCGACTTATCAGGCTTCCTTGTGCAATTTAAGTCCTGCAATCAACGCACTTCAAGATCGACTAAGAGAGAATGAAATTCGGTTAGCAGTTCTGAGTGAAGAAGCCAAGAGTCTGGAGGCGGAGGCATCTACGTCCAGAGGGAGTGAAGCAAGTTTAGGATCTCCCCGTCAAGTTGCTTCTCCCCGTCAAGTTGCATCTCCCATACATCGAGGAAGTTCATCTCCTCGTCAAAGAAACTCGCAGAGTTCAAGTGAATCTCTTGGTTCAAAGAGTGTAGCTAGTCCTGGTAGCCGGAGCAGAAAAGGATAA

Protein sequence

>Msa0226590

MSLTSVKMSEEVWLTCATHAFSTETEEIMGLLLGDIQHSKNGSVTALIWGASPQTRSDRRKDRVETNPEQMTVTTGRTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCYNEDANKIGKIQVIAFQSSDGKQNSLSRPIPLSPVNKSSIIHIDSSPSSSENLTTRSGYFKGDSPEQDTGDSRSAGASKGGGRSSELGNFFANADANYLGSVKDGENYHLNNSDIIAVDDPMDMSESMQEAMHRSNMDMSGAEYIRKEIPLHVLPSLSFINLDSPLSSYKDLQHVLFEEERTAYNQAILQNTRDGKVHPLAFIHHTSTYQASLCNLSPAINALQDRLRENEIRLAVLSEEAKSLEAEASTSRGSEASLGSPRQVASPRQVASPIHRGSSSPRQRNSQSSSESLGSKSVASPGSRSRKG*