Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0226590 | XP_003597836.2 | 95.260 | 443 | 6 | 2 | 1 | 428 | 1 | 443 | 0.0 | 860 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0226590 | sp|Q4VA72|BRCC3_XENTR | 44.751 | 181 | 81 | 4 | 1 | 166 | 1 | 177 | 2.45e-45 | 160 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0226590 | G7IMH2 | 95.260 | 443 | 6 | 2 | 1 | 428 | 1 | 443 | 0.0 | 860 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0226590 | Msa0260680 | 0.806613 | 7.555601e-50 | -8.615850e-47 |
Msa0226590 | Msa0309770 | 0.811505 | 6.771417e-51 | -8.615850e-47 |
Msa0226590 | Msa0481530 | 0.813915 | 2.009630e-51 | -8.615850e-47 |
Msa0226590 | Msa0493410 | 0.801070 | 1.070848e-48 | -8.615850e-47 |
Msa0226590 | Msa0529890 | 0.813390 | 2.622450e-51 | -8.615850e-47 |
Msa0226590 | Msa0532990 | 0.800527 | 1.382130e-48 | -8.615850e-47 |
Msa0226590 | Msa0572840 | 0.821926 | 3.113054e-53 | -8.615850e-47 |
Msa0226590 | Msa0585560 | 0.816521 | 5.298205e-52 | -8.615850e-47 |
Msa0226590 | Msa0625720 | 0.807435 | 5.061198e-50 | -8.615850e-47 |
Msa0226590 | Msa0643560 | 0.802435 | 5.618886e-49 | -8.615850e-47 |
Msa0226590 | Msa0661650 | 0.800542 | 1.372392e-48 | -8.615850e-47 |
Msa0226590 | Msa0663390 | 0.821543 | 3.819288e-53 | -8.615850e-47 |
Msa0226590 | Msa0707250 | 0.817873 | 2.631250e-52 | -8.615850e-47 |
Msa0226590 | Msa1035480 | 0.800610 | 1.329238e-48 | -8.615850e-47 |
Msa0226590 | Msa1048220 | 0.807536 | 4.818098e-50 | -8.615850e-47 |
Msa0226590 | Msa1113170 | 0.801504 | 8.728928e-49 | -8.615850e-47 |
Msa0226590 | Msa1225700 | 0.808292 | 3.327664e-50 | -8.615850e-47 |
Msa0226590 | Msa1375560 | 0.806247 | 9.026240e-50 | -8.615850e-47 |
Msa0226590 | Msa1392240 | 0.803691 | 3.088777e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0226590 | MtrunA17_Chr2g0332611 | 96.703 | 364 | 6 | 2 | 71 | 428 | 1 | 364 | 0.0 | 714 |
Msa0226590 | MtrunA17_Chr2g0332601 | 98.592 | 71 | 1 | 0 | 1 | 71 | 1 | 71 | 5.99e-45 | 152 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0226590 | AT1G80210.1 | 64.020 | 403 | 118 | 8 | 1 | 384 | 1 | 395 | 1.35e-177 | 502 |
Msa0226590 | AT1G80210.2 | 65.333 | 375 | 105 | 7 | 1 | 356 | 1 | 369 | 2.85e-171 | 484 |
Msa0226590 | AT3G06820.3 | 65.140 | 393 | 111 | 7 | 1 | 372 | 1 | 388 | 5.90e-168 | 477 |
Msa0226590 | AT3G06820.2 | 65.140 | 393 | 111 | 7 | 1 | 372 | 1 | 388 | 5.90e-168 | 477 |
Msa0226590 | AT3G06820.1 | 63.141 | 312 | 100 | 5 | 71 | 372 | 1 | 307 | 3.00e-124 | 363 |
Find 116 sgRNAs with CRISPR-Local
Find 360 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTGATTCTGGGTTTAT+TGG | 0.115541 | 2_1:-77111248 | Msa0226590:CDS |
CGATGCTCAGTGAAATATTT+TGG | 0.127476 | 2_1:-77108443 | Msa0226590:three_prime_UTR |
ATGTATCAACTTCTTGATTC+TGG | 0.141321 | 2_1:-77111257 | Msa0226590:CDS |
CTATTAATCTTTAACCTAAT+TGG | 0.182784 | 2_1:+77113781 | None:intergenic |
TACTGAAACCGAAGAGATTA+TGG | 0.204040 | 2_1:-77113522 | Msa0226590:CDS |
TTCTTGATTCTGGGTTTATT+GGG | 0.251629 | 2_1:-77111247 | Msa0226590:CDS |
ACACCACACTTCGACTTATC+AGG | 0.275809 | 2_1:-77109347 | Msa0226590:CDS |
ATTTGTTTAATTAGCCAATT+AGG | 0.275927 | 2_1:-77113795 | Msa0226590:five_prime_UTR |
TTGTTCCTCCAAGAATAAAA+TGG | 0.292010 | 2_1:+77108375 | None:intergenic |
AGCTATGCACCGCTCAAATA+TGG | 0.296293 | 2_1:-77110376 | Msa0226590:CDS |
AAAATTAAATCAGGACTATA+CGG | 0.302565 | 2_1:-77108306 | Msa0226590:three_prime_UTR |
GAGATTATGGGTCTTCTTCT+TGG | 0.309605 | 2_1:-77113509 | Msa0226590:CDS |
GAATCACCAGTGTCCTGCTC+TGG | 0.330705 | 2_1:+77110928 | None:intergenic |
TCTTGAAGTGCGTTGATTGC+AGG | 0.331174 | 2_1:+77109197 | None:intergenic |
AGTTATCTCAATGACATTCA+TGG | 0.337538 | 2_1:-77108347 | Msa0226590:three_prime_UTR |
GGAGTGTGACTGCATTGATA+TGG | 0.369051 | 2_1:-77113351 | Msa0226590:CDS |
TGTATCAACTTCTTGATTCT+GGG | 0.370430 | 2_1:-77111256 | Msa0226590:CDS |
GACTAAGAGAGAATGAAATT+CGG | 0.373072 | 2_1:-77109172 | Msa0226590:CDS |
GAAGCAGCAGCCAACTGTTC+AGG | 0.373869 | 2_1:+77113274 | None:intergenic |
TGAAAATGTCCGAAGAAGTT+TGG | 0.381529 | 2_1:-77113571 | Msa0226590:CDS |
AATGCCGATGCCAACTATCT+AGG | 0.397041 | 2_1:-77110489 | Msa0226590:CDS |
AGTTATGTCAAAATTAAATC+AGG | 0.397209 | 2_1:-77108315 | Msa0226590:three_prime_UTR |
AGAGGGAGTGAAGCAAGTTT+AGG | 0.400423 | 2_1:-77108750 | Msa0226590:CDS |
CGTCGATCAGACCTTGTTTG+AGG | 0.408498 | 2_1:+77113319 | None:intergenic |
GAGTGAAGAAGCCAAGAGTC+TGG | 0.408537 | 2_1:-77108793 | Msa0226590:CDS |
ACTGAAACCGAAGAGATTAT+GGG | 0.414431 | 2_1:-77113521 | Msa0226590:CDS |
AGATGAACTTCCTCGATGTA+TGG | 0.414680 | 2_1:+77108686 | None:intergenic |
ACTAAGAGAGAATGAAATTC+GGG | 0.428257 | 2_1:-77109171 | Msa0226590:intron |
TGATGAATCTATATGAATAA+TGG | 0.429530 | 2_1:+77111005 | None:intergenic |
GAGAATTTAACAACAAGATC+TGG | 0.435278 | 2_1:-77110970 | Msa0226590:CDS |
CACAGAATGACTGTTACAAC+TGG | 0.444669 | 2_1:-77112623 | Msa0226590:intron |
GCATGTTAACCAAACTTCTT+CGG | 0.444704 | 2_1:+77113562 | None:intergenic |
CCTGGTAGCCGGAGCAGAAA+AGG | 0.449380 | 2_1:-77108603 | Msa0226590:CDS |
TCTTCTTCTTGGCGATATCC+AGG | 0.452533 | 2_1:-77113498 | Msa0226590:intron |
AACAAGATCTGGTTACTTCA+AGG | 0.457060 | 2_1:-77110959 | Msa0226590:CDS |
TGCCTCCGCCTCCAGACTCT+TGG | 0.459710 | 2_1:+77108782 | None:intergenic |
AGCCAAGAGTCTGGAGGCGG+AGG | 0.461420 | 2_1:-77108784 | Msa0226590:CDS |
GGAAGAACAACGAGGGTGAT+AGG | 0.461704 | 2_1:-77112602 | Msa0226590:CDS |
AAGAAGACCCATAATCTCTT+CGG | 0.464604 | 2_1:+77113514 | None:intergenic |
GAGAAGTGCTGGTGCTAGTA+AGG | 0.473131 | 2_1:-77110905 | Msa0226590:intron |
TAAACTTGCTTCACTCCCTC+TGG | 0.474010 | 2_1:+77108752 | None:intergenic |
TATGGGAGATGCAACTTGAC+GGG | 0.478253 | 2_1:+77108704 | None:intergenic |
ATGCCGATGCCAACTATCTA+GGG | 0.486981 | 2_1:-77110488 | Msa0226590:CDS |
TCTGCTTTCCATCAGATGAC+TGG | 0.487274 | 2_1:+77111073 | None:intergenic |
GACGGGGAGAAGCAACTTGA+CGG | 0.490854 | 2_1:+77108721 | None:intergenic |
GAGTGTGACTGCATTGATAT+GGG | 0.495477 | 2_1:-77113350 | Msa0226590:CDS |
ACGGGGAGAAGCAACTTGAC+GGG | 0.497948 | 2_1:+77108722 | None:intergenic |
GGTTGAAGAAGGAGGCGAGA+GGG | 0.499327 | 2_1:-77113708 | Msa0226590:five_prime_UTR |
CATACTTTCTGACATATCCA+TGG | 0.509731 | 2_1:+77110404 | None:intergenic |
CAGAGTTCAAGTGAATCTCT+TGG | 0.511986 | 2_1:-77108645 | Msa0226590:CDS |
GTTAAATTCTCTGAGGAACT+TGG | 0.513339 | 2_1:+77110982 | None:intergenic |
ATTGCTTTCCAGTCATCTGA+TGG | 0.523557 | 2_1:-77111081 | Msa0226590:CDS |
CTCTGCGAGTTTCTTTGACG+AGG | 0.523918 | 2_1:+77108663 | None:intergenic |
AATCACCAGTGTCCTGCTCT+GGG | 0.524238 | 2_1:+77110929 | None:intergenic |
TTTACAGGAGACAGAGGTAT+GGG | 0.525737 | 2_1:+77111036 | None:intergenic |
GATGAACTTCCTCGATGTAT+GGG | 0.533300 | 2_1:+77108687 | None:intergenic |
TAGACAGTTGAGGTTGAAGA+AGG | 0.533784 | 2_1:-77113719 | Msa0226590:five_prime_UTR |
ATGATGATAGCGGCGAATCA+AGG | 0.533813 | 2_1:+77109612 | None:intergenic |
TAACAATGTTGAATTCTCGT+TGG | 0.537203 | 2_1:-77108579 | Msa0226590:three_prime_UTR |
TACAATTGTGAGTGGTGACT+TGG | 0.540547 | 2_1:-77108398 | Msa0226590:three_prime_UTR |
ATCTCAATGACATTCATGGT+TGG | 0.540600 | 2_1:-77108343 | Msa0226590:three_prime_UTR |
GTATGGGAGATGCAACTTGA+CGG | 0.541009 | 2_1:+77108703 | None:intergenic |
TCAAAGAGTGTAGCTAGTCC+TGG | 0.543158 | 2_1:-77108621 | Msa0226590:CDS |
CAAGGATGGCAGCACATGAA+GGG | 0.544109 | 2_1:+77109646 | None:intergenic |
CAAGGGAGATAGCCCAGAGC+AGG | 0.545536 | 2_1:-77110941 | Msa0226590:CDS |
ATTTACAGGAGACAGAGGTA+TGG | 0.546956 | 2_1:+77111035 | None:intergenic |
GAACAACGAGGGTGATAGGC+TGG | 0.559162 | 2_1:-77112598 | Msa0226590:CDS |
GTGTAGCTAGTCCTGGTAGC+CGG | 0.559875 | 2_1:-77108614 | Msa0226590:CDS |
TGGTGCAGAGTATATTAGAA+AGG | 0.560870 | 2_1:-77109675 | Msa0226590:CDS |
ACAAGGATGGCAGCACATGA+AGG | 0.562454 | 2_1:+77109645 | None:intergenic |
ACAAGATCTGGTTACTTCAA+GGG | 0.568314 | 2_1:-77110958 | Msa0226590:CDS |
TATCTAGGGAGTGTAAAAGA+TGG | 0.569569 | 2_1:-77110474 | Msa0226590:CDS |
AAATTAAATCAGGACTATAC+GGG | 0.570034 | 2_1:-77108305 | Msa0226590:three_prime_UTR |
ACTGGTGATTCGAGAAGTGC+TGG | 0.570423 | 2_1:-77110916 | Msa0226590:CDS |
ACATACCGACATGTGAAGGC+AGG | 0.575866 | 2_1:+77112549 | None:intergenic |
AGAAGCCAAGAGTCTGGAGG+CGG | 0.576842 | 2_1:-77108787 | Msa0226590:CDS |
GCAACATGTACTATTTGAAG+AGG | 0.579067 | 2_1:-77109579 | Msa0226590:CDS |
CAGTAATATGAGGATGTGAA+TGG | 0.584536 | 2_1:+77112573 | None:intergenic |
GGATATGTCAGAAAGTATGC+AGG | 0.584919 | 2_1:-77110400 | Msa0226590:CDS |
GAAGGCAGGACAGTAATATG+AGG | 0.590307 | 2_1:+77112563 | None:intergenic |
AAGCCATCTTGCAAAATACA+AGG | 0.601236 | 2_1:-77109538 | Msa0226590:intron |
ACAGTTGAGGTTGAAGAAGG+AGG | 0.602951 | 2_1:-77113716 | Msa0226590:five_prime_UTR |
GATAGCCCAGAGCAGGACAC+TGG | 0.603898 | 2_1:-77110934 | Msa0226590:CDS |
AGGTTGAAGAAGGAGGCGAG+AGG | 0.607767 | 2_1:-77113709 | Msa0226590:five_prime_UTR |
AAGTACATACCGACATGTGA+AGG | 0.609102 | 2_1:+77112545 | None:intergenic |
CATCGCAGTTGATGATCCCA+TGG | 0.612966 | 2_1:-77110421 | Msa0226590:CDS |
ATGTACTATTTGAAGAGGAA+CGG | 0.613140 | 2_1:-77109574 | Msa0226590:CDS |
TGTTTCTGACTAGACAGTTG+AGG | 0.614389 | 2_1:-77113729 | Msa0226590:five_prime_UTR |
ATACTTTCTGACATATCCAT+GGG | 0.614506 | 2_1:+77110405 | None:intergenic |
ACTGTCCTGCCTTCACATGT+CGG | 0.615521 | 2_1:-77112554 | Msa0226590:intron |
TTCGCCGCTATCATCATACA+AGG | 0.623157 | 2_1:-77109606 | Msa0226590:CDS |
TTACAACGAAGATGCAAACA+AGG | 0.623673 | 2_1:-77111210 | Msa0226590:intron |
AAGGATGGCAGCACATGAAG+GGG | 0.623863 | 2_1:+77109647 | None:intergenic |
GCGGAGGCATCTACGTCCAG+AGG | 0.627316 | 2_1:-77108768 | Msa0226590:CDS |
CGGGGAGAAGCAACTTGACG+GGG | 0.643627 | 2_1:+77108723 | None:intergenic |
TCTTGTTGTTAAATTCTCTG+AGG | 0.649767 | 2_1:+77110975 | None:intergenic |
ACTCCCTAGATAGTTGGCAT+CGG | 0.650742 | 2_1:+77110485 | None:intergenic |
GGGGTGCATCTCCTCAAACA+AGG | 0.651860 | 2_1:-77113330 | Msa0226590:CDS |
ATCAAGGTTGATAAAAGACA+AGG | 0.656437 | 2_1:+77109628 | None:intergenic |
CGGAGGCATCTACGTCCAGA+GGG | 0.659336 | 2_1:-77108767 | Msa0226590:CDS |
AGTGTGACTGCATTGATATG+GGG | 0.661338 | 2_1:-77113349 | Msa0226590:CDS |
ACCTCATGTCCATATTTGAG+CGG | 0.663052 | 2_1:+77110367 | None:intergenic |
ATGGGAGATGCAACTTGACG+GGG | 0.663091 | 2_1:+77108705 | None:intergenic |
CACCACTCACAATTGTACAC+AGG | 0.666140 | 2_1:+77108404 | None:intergenic |
ACCGCTCAAATATGGACATG+AGG | 0.667262 | 2_1:-77110368 | Msa0226590:intron |
TGAAGAAGCCAAGAGTCTGG+AGG | 0.667597 | 2_1:-77108790 | Msa0226590:CDS |
AAGCCTGATAAGTCGAAGTG+TGG | 0.672156 | 2_1:+77109344 | None:intergenic |
GTGTGGTGTATGAAAGCGAG+TGG | 0.677265 | 2_1:+77109361 | None:intergenic |
ATACTCAATCAACTTGCACA+AGG | 0.679543 | 2_1:+77109321 | None:intergenic |
AGATCCTTGTATGATGATAG+CGG | 0.689342 | 2_1:+77109602 | None:intergenic |
ACATAGAATGTACATGATAG+CGG | 0.690172 | 2_1:-77108500 | Msa0226590:three_prime_UTR |
TACAACTGGAAGAACAACGA+GGG | 0.713101 | 2_1:-77112609 | Msa0226590:CDS |
AGGTTGATAAAAGACAAGGA+TGG | 0.722279 | 2_1:+77109632 | None:intergenic |
TACCTGTGTACAATTGTGAG+TGG | 0.729721 | 2_1:-77108406 | Msa0226590:three_prime_UTR |
GTTGCATCTCCCATACATCG+AGG | 0.759729 | 2_1:-77108696 | Msa0226590:CDS |
TTACAACTGGAAGAACAACG+AGG | 0.766921 | 2_1:-77112610 | Msa0226590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATGAGATTATTATTATTTT+AGG | - | chr2_1:77108484-77108503 | Msa0226590:three_prime_UTR | 10.0% |
!!! | ATGAGATTATTATTATTTTA+GGG | - | chr2_1:77108485-77108504 | Msa0226590:three_prime_UTR | 10.0% |
!! | AAAAAAATCAAGAATAATTT+GGG | + | chr2_1:77108680-77108699 | None:intergenic | 10.0% |
!! | AAAAAAAATCAAGAATAATT+TGG | + | chr2_1:77108681-77108700 | None:intergenic | 10.0% |
!!! | AATAAAGAATTATTACTTTT+TGG | - | chr2_1:77112905-77112924 | Msa0226590:intron | 10.0% |
!!! | TATTAAAATTTTCAACTTGA+TGG | + | chr2_1:77108317-77108336 | None:intergenic | 15.0% |
!!! | ATTATTATTTTAGGGTTTTT+AGG | - | chr2_1:77108493-77108512 | Msa0226590:three_prime_UTR | 15.0% |
!!! | TTATTATTTTAGGGTTTTTA+GGG | - | chr2_1:77108494-77108513 | Msa0226590:three_prime_UTR | 15.0% |
!! | AAAAAATCAAGAATAATTTG+GGG | + | chr2_1:77108679-77108698 | None:intergenic | 15.0% |
!!! | AAAACTCATTTTTAATTCAA+TGG | - | chr2_1:77108946-77108965 | Msa0226590:intron | 15.0% |
!!! | TTTAAATTGTAATTTTTCCT+AGG | - | chr2_1:77111587-77111606 | Msa0226590:intron | 15.0% |
!!! | TTAAATTGTAATTTTTCCTA+GGG | - | chr2_1:77111588-77111607 | Msa0226590:intron | 15.0% |
!!! | GTTTTAAAATAACACATATT+TGG | - | chr2_1:77112433-77112452 | Msa0226590:intron | 15.0% |
!! | AAATAGGACTAATAAATAAA+CGG | + | chr2_1:77112865-77112884 | None:intergenic | 15.0% |
!!! | TTTATTAGTCCTATTTTTAT+TGG | - | chr2_1:77112869-77112888 | Msa0226590:intron | 15.0% |
!! | GTAAATAACAGTAAAAAAAT+TGG | + | chr2_1:77113112-77113131 | None:intergenic | 15.0% |
!!! | AAGTTGAAAATTTTAATAGC+TGG | - | chr2_1:77108319-77108338 | Msa0226590:three_prime_UTR | 20.0% |
!! | ATTTGTTTAATTAGCCAATT+AGG | - | chr2_1:77108342-77108361 | Msa0226590:three_prime_UTR | 20.0% |
!! | CTATTAATCTTTAACCTAAT+TGG | + | chr2_1:77108359-77108378 | None:intergenic | 20.0% |
!! | ATAGACTATAAATAATAGGT+AGG | + | chr2_1:77110120-77110139 | None:intergenic | 20.0% |
!! | GATGATAGACTATAAATAAT+AGG | + | chr2_1:77110124-77110143 | None:intergenic | 20.0% |
!! | TGATGAATCTATATGAATAA+TGG | + | chr2_1:77111135-77111154 | None:intergenic | 20.0% |
!! | AAATGCAATTATGATTATAC+TGG | + | chr2_1:77111509-77111528 | None:intergenic | 20.0% |
!! | GTCAAACTTTGAATTATAAA+TGG | - | chr2_1:77112278-77112297 | Msa0226590:intron | 20.0% |
!!! | TGTTATTTTAAAACCTAAGA+TGG | + | chr2_1:77112427-77112446 | None:intergenic | 20.0% |
!! | TTAAAATAACACATATTTGG+TGG | - | chr2_1:77112436-77112455 | Msa0226590:intron | 20.0% |
!!! | CGTACATATATGAAATTTTA+TGG | - | chr2_1:77112654-77112673 | Msa0226590:intron | 20.0% |
!!! | ATTTTATGGAAACACTATTT+TGG | - | chr2_1:77112668-77112687 | Msa0226590:intron | 20.0% |
!!! | TTTTATGGAAACACTATTTT+GGG | - | chr2_1:77112669-77112688 | Msa0226590:intron | 20.0% |
!! | AATAGGACTAATAAATAAAC+GGG | + | chr2_1:77112864-77112883 | None:intergenic | 20.0% |
!! | AAGAACAAACCAATAAAAAT+AGG | + | chr2_1:77112881-77112900 | None:intergenic | 20.0% |
!! | TTGGAAATAAAATTTCATAG+AGG | + | chr2_1:77113093-77113112 | None:intergenic | 20.0% |
!!! | TTTTTACTGTTATTTACAGA+AGG | - | chr2_1:77113115-77113134 | Msa0226590:intron | 20.0% |
!!! | TTAGTTCTGAATCTTAATTA+GGG | + | chr2_1:77113141-77113160 | None:intergenic | 20.0% |
!! | AGTTATGTCAAAATTAAATC+AGG | - | chr2_1:77113822-77113841 | Msa0226590:five_prime_UTR | 20.0% |
!! | AAAATTAAATCAGGACTATA+CGG | - | chr2_1:77113831-77113850 | Msa0226590:five_prime_UTR | 20.0% |
! | AACATTGTGAAACACAAATT+GGG | + | chr2_1:77108735-77108754 | None:intergenic | 25.0% |
! | AATAACACAGAACAAGAAAA+AGG | + | chr2_1:77108906-77108925 | None:intergenic | 25.0% |
! | ATTTCTAATTGAAACATGTG+TGG | + | chr2_1:77109111-77109130 | None:intergenic | 25.0% |
!! | TTAAGTTGTTTAACCAAACA+GGG | + | chr2_1:77109161-77109180 | None:intergenic | 25.0% |
!! | ATTAAGTTGTTTAACCAAAC+AGG | + | chr2_1:77109162-77109181 | None:intergenic | 25.0% |
! | TGTATAACATAAAGGATGTT+AGG | + | chr2_1:77109811-77109830 | None:intergenic | 25.0% |
! | ATATGAATCAAATATGTTGC+TGG | - | chr2_1:77109945-77109964 | Msa0226590:intron | 25.0% |
! | ATAGATACTAGATCAAAATG+TGG | - | chr2_1:77109980-77109999 | Msa0226590:intron | 25.0% |
! | CTTGAATACATTGAATGTAA+TGG | + | chr2_1:77110035-77110054 | None:intergenic | 25.0% |
!!! | ATTTACTTTGGTTTTGGATA+GGG | + | chr2_1:77110084-77110103 | None:intergenic | 25.0% |
! | GAAGTATAAATAGCAGATAT+AGG | + | chr2_1:77110460-77110479 | None:intergenic | 25.0% |
!!! | TGCTATTTATACTTCACTTT+TGG | - | chr2_1:77110465-77110484 | Msa0226590:CDS | 25.0% |
!!! | TACTTCACTTTTGGTATTTA+AGG | - | chr2_1:77110474-77110493 | Msa0226590:CDS | 25.0% |
! | TGTAAGACATAGAAAATGTA+TGG | - | chr2_1:77110517-77110536 | Msa0226590:CDS | 25.0% |
!!! | GTTCTATAAATTAGGTTGAA+AGG | - | chr2_1:77110594-77110613 | Msa0226590:intron | 25.0% |
!! | TAATGATTATACTGTTGCTT+TGG | + | chr2_1:77110819-77110838 | None:intergenic | 25.0% |
!! | TTTACTATTTTGTAGATGTG+CGG | - | chr2_1:77110848-77110867 | Msa0226590:intron | 25.0% |
!!! | ATAATGGAGCTTTTATTTAC+AGG | + | chr2_1:77111119-77111138 | None:intergenic | 25.0% |
! | TCACTCACAAAAATATAGAT+TGG | + | chr2_1:77111371-77111390 | None:intergenic | 25.0% |
! | GAAATTCTTTCCTTTATACT+GGG | - | chr2_1:77111408-77111427 | Msa0226590:intron | 25.0% |
! | AACATCACTTTATCAACAAA+AGG | + | chr2_1:77111446-77111465 | None:intergenic | 25.0% |
! | ATAAAGTGATGTTGATCTTA+TGG | - | chr2_1:77111453-77111472 | Msa0226590:intron | 25.0% |
!! | ATAATTGCATTTTTCTGTCT+AGG | - | chr2_1:77111517-77111536 | Msa0226590:intron | 25.0% |
! | ACTGAAATTAGGAAGATTAA+GGG | - | chr2_1:77111990-77112009 | Msa0226590:intron | 25.0% |
! | TTACAGTAAAATGGATATCA+GGG | + | chr2_1:77112021-77112040 | None:intergenic | 25.0% |
! | TTTACAGTAAAATGGATATC+AGG | + | chr2_1:77112022-77112041 | None:intergenic | 25.0% |
! | CATTACTGTTTACAGTAAAA+TGG | + | chr2_1:77112030-77112049 | None:intergenic | 25.0% |
! | ATAGGCATTTCATATATACT+TGG | + | chr2_1:77112172-77112191 | None:intergenic | 25.0% |
! | TTAGTGTACTATGTTATCAT+AGG | + | chr2_1:77112190-77112209 | None:intergenic | 25.0% |
! | GCATTAGAAATATAATCATG+CGG | - | chr2_1:77112215-77112234 | Msa0226590:intron | 25.0% |
! | CATTAGAAATATAATCATGC+GGG | - | chr2_1:77112216-77112235 | Msa0226590:intron | 25.0% |
! | ATTAGAAATATAATCATGCG+GGG | - | chr2_1:77112217-77112236 | Msa0226590:intron | 25.0% |
! | ATTGTATAATGATTGTTCAC+AGG | - | chr2_1:77112358-77112377 | Msa0226590:intron | 25.0% |
! | ATAAAATTTCATAGAGGATC+AGG | + | chr2_1:77113087-77113106 | None:intergenic | 25.0% |
!!! | GTTAGTTCTGAATCTTAATT+AGG | + | chr2_1:77113142-77113161 | None:intergenic | 25.0% |
! | ATTAAGATTCAGAACTAACT+TGG | - | chr2_1:77113143-77113162 | Msa0226590:intron | 25.0% |
!! | ACAGAAATCTCAAATTTGTT+GGG | + | chr2_1:77113245-77113264 | None:intergenic | 25.0% |
!! | TTTCAAACTAGCAAATTTTG+CGG | + | chr2_1:77113673-77113692 | None:intergenic | 25.0% |
! | GACATTTTCGCGAAAAAAAT+TGG | + | chr2_1:77108535-77108554 | None:intergenic | 30.0% |
ACATTGTGAAACACAAATTG+GGG | + | chr2_1:77108734-77108753 | None:intergenic | 30.0% | |
CAACATTGTGAAACACAAAT+TGG | + | chr2_1:77108736-77108755 | None:intergenic | 30.0% | |
!! | ATTTTTCAGCATTCGAAGAA+TGG | - | chr2_1:77108764-77108783 | Msa0226590:CDS | 30.0% |
!! | TTTTTCAGCATTCGAAGAAT+GGG | - | chr2_1:77108765-77108784 | Msa0226590:CDS | 30.0% |
ATTGAATGTAATTACACCTG+CGG | - | chr2_1:77109065-77109084 | Msa0226590:intron | 30.0% | |
AACCATTGCATTAAACACAT+GGG | + | chr2_1:77109402-77109421 | None:intergenic | 30.0% | |
AAACCATTGCATTAAACACA+TGG | + | chr2_1:77109403-77109422 | None:intergenic | 30.0% | |
AGAACAGCAACTATCAAAAT+TGG | + | chr2_1:77109442-77109461 | None:intergenic | 30.0% | |
! | TTGCTGTTCTTAGTGATTTA+AGG | - | chr2_1:77109452-77109471 | Msa0226590:intron | 30.0% |
GAAGACAATATCGAAACAAT+GGG | + | chr2_1:77109633-77109652 | None:intergenic | 30.0% | |
AGAAGACAATATCGAAACAA+TGG | + | chr2_1:77109634-77109653 | None:intergenic | 30.0% | |
!!! | TTGTTTTAGTTGTTTGTGCT+TGG | - | chr2_1:77109674-77109693 | Msa0226590:CDS | 30.0% |
TCATAAATGCCATACACATT+AGG | + | chr2_1:77109715-77109734 | None:intergenic | 30.0% | |
TGTTAGCATAGATTTGAGAA+AGG | - | chr2_1:77109777-77109796 | Msa0226590:intron | 30.0% | |
CTACGAACTGTATAACATAA+AGG | + | chr2_1:77109819-77109838 | None:intergenic | 30.0% | |
!! | GTCAACAGTATTTTTGTGTA+TGG | - | chr2_1:77109847-77109866 | Msa0226590:intron | 30.0% |
!!! | GATTTACTTTGGTTTTGGAT+AGG | + | chr2_1:77110085-77110104 | None:intergenic | 30.0% |
AGTCTTCGTATAATTTCTCA+TGG | + | chr2_1:77110215-77110234 | None:intergenic | 30.0% | |
CTGTTTCAATGAAACAATAC+AGG | + | chr2_1:77110256-77110275 | None:intergenic | 30.0% | |
ATAATTGTACATGCCATGTA+GGG | + | chr2_1:77110431-77110450 | None:intergenic | 30.0% | |
!! | TCACTTTTGGTATTTAAGGT+AGG | - | chr2_1:77110478-77110497 | Msa0226590:CDS | 30.0% |
GCTAGAGAGTTCTATAAATT+AGG | - | chr2_1:77110586-77110605 | Msa0226590:intron | 30.0% | |
CAGTACTCACTATTCATATA+CGG | - | chr2_1:77110646-77110665 | Msa0226590:intron | 30.0% | |
TACGGATTCTAAACTTCTAA+TGG | - | chr2_1:77110664-77110683 | Msa0226590:intron | 30.0% | |
! | TGCTTTGGATAAAATCAAAC+AGG | + | chr2_1:77110804-77110823 | None:intergenic | 30.0% |
ATGTATCAACTTCTTGATTC+TGG | - | chr2_1:77110880-77110899 | Msa0226590:intron | 30.0% | |
TGTATCAACTTCTTGATTCT+GGG | - | chr2_1:77110881-77110900 | Msa0226590:intron | 30.0% | |
TTCTTGATTCTGGGTTTATT+GGG | - | chr2_1:77110890-77110909 | Msa0226590:intron | 30.0% | |
! | GCTTTAAACTGTATTCAGAT+AGG | - | chr2_1:77111020-77111039 | Msa0226590:CDS | 30.0% |
!! | TCTTGTTGTTAAATTCTCTG+AGG | + | chr2_1:77111165-77111184 | None:intergenic | 30.0% |
GAGAATTTAACAACAAGATC+TGG | - | chr2_1:77111167-77111186 | Msa0226590:intron | 30.0% | |
AACTGTTGTCTATTCTTCAT+GGG | + | chr2_1:77111292-77111311 | None:intergenic | 30.0% | |
AAACTGTTGTCTATTCTTCA+TGG | + | chr2_1:77111293-77111312 | None:intergenic | 30.0% | |
TTACATTTGAATGCAGAACA+TGG | - | chr2_1:77111325-77111344 | Msa0226590:intron | 30.0% | |
AGTGAAGTTCTTAAAGATCA+GGG | - | chr2_1:77111386-77111405 | Msa0226590:intron | 30.0% | |
GGAAATTCTTTCCTTTATAC+TGG | - | chr2_1:77111407-77111426 | Msa0226590:intron | 30.0% | |
GCAATTATGATTATACTGGT+GGG | + | chr2_1:77111505-77111524 | None:intergenic | 30.0% | |
TGCAATTATGATTATACTGG+TGG | + | chr2_1:77111506-77111525 | None:intergenic | 30.0% | |
! | AATTGTAATTTTTCCTAGGG+TGG | - | chr2_1:77111591-77111610 | Msa0226590:intron | 30.0% |
! | ATTGTAATTTTTCCTAGGGT+GGG | - | chr2_1:77111592-77111611 | Msa0226590:intron | 30.0% |
ATACTTTCTGACATATCCAT+GGG | + | chr2_1:77111735-77111754 | None:intergenic | 30.0% | |
TGTTTATCAACCGACAATTT+AGG | - | chr2_1:77111829-77111848 | Msa0226590:intron | 30.0% | |
AAAAAACACGCCTAAATTGT+CGG | + | chr2_1:77111842-77111861 | None:intergenic | 30.0% | |
TTCCTAATTTCAGTCTCTAA+TGG | + | chr2_1:77111984-77112003 | None:intergenic | 30.0% | |
GACTGAAATTAGGAAGATTA+AGG | - | chr2_1:77111989-77112008 | Msa0226590:intron | 30.0% | |
CTGAAATTAGGAAGATTAAG+GGG | - | chr2_1:77111991-77112010 | Msa0226590:intron | 30.0% | |
TTAGAAATATAATCATGCGG+GGG | - | chr2_1:77112218-77112237 | Msa0226590:intron | 30.0% | |
! | ACCATGTCTAATCTTTTATG+AGG | - | chr2_1:77112384-77112403 | Msa0226590:intron | 30.0% |
ACCTCATAAAAGATTAGACA+TGG | + | chr2_1:77112388-77112407 | None:intergenic | 30.0% | |
!! | ATCAAGGTTGATAAAAGACA+AGG | + | chr2_1:77112512-77112531 | None:intergenic | 30.0% |
ATGTACTATTTGAAGAGGAA+CGG | - | chr2_1:77112563-77112582 | Msa0226590:CDS | 30.0% | |
AAAGTACAAACAAATGGCAT+AGG | + | chr2_1:77112736-77112755 | None:intergenic | 30.0% | |
CCATTTGTTTGTACTTTGTA+GGG | - | chr2_1:77112739-77112758 | Msa0226590:intron | 30.0% | |
GACTAAGAGAGAATGAAATT+CGG | - | chr2_1:77112965-77112984 | Msa0226590:intron | 30.0% | |
ACTAAGAGAGAATGAAATTC+GGG | - | chr2_1:77112966-77112985 | Msa0226590:intron | 30.0% | |
! | AATAACTTGTGAGCATGTTT+AGG | + | chr2_1:77113216-77113235 | None:intergenic | 30.0% |
GACAGAAATCTCAAATTTGT+TGG | + | chr2_1:77113246-77113265 | None:intergenic | 30.0% | |
TAACAATGTTGAATTCTCGT+TGG | - | chr2_1:77113558-77113577 | Msa0226590:CDS | 30.0% | |
ACATAGAATGTACATGATAG+CGG | - | chr2_1:77113637-77113656 | Msa0226590:five_prime_UTR | 30.0% | |
!!! | CAGTGAAATATTTTGGTTGT+TGG | - | chr2_1:77113701-77113720 | Msa0226590:five_prime_UTR | 30.0% |
TTGTTCCTCCAAGAATAAAA+TGG | + | chr2_1:77113765-77113784 | None:intergenic | 30.0% | |
AGTTATCTCAATGACATTCA+TGG | - | chr2_1:77113790-77113809 | Msa0226590:five_prime_UTR | 30.0% | |
TGAAAATGTCCGAAGAAGTT+TGG | - | chr2_1:77108566-77108585 | Msa0226590:three_prime_UTR | 35.0% | |
GCATGTTAACCAAACTTCTT+CGG | + | chr2_1:77108578-77108597 | None:intergenic | 35.0% | |
TACTGAAACCGAAGAGATTA+TGG | - | chr2_1:77108615-77108634 | Msa0226590:CDS | 35.0% | |
ACTGAAACCGAAGAGATTAT+GGG | - | chr2_1:77108616-77108635 | Msa0226590:CDS | 35.0% | |
AAGAAGACCCATAATCTCTT+CGG | + | chr2_1:77108626-77108645 | None:intergenic | 35.0% | |
GGGGATTATTATACTATACC+TGG | + | chr2_1:77108660-77108679 | None:intergenic | 35.0% | |
TGAAACTAATCCTGAACAGT+TGG | - | chr2_1:77108853-77108872 | Msa0226590:intron | 35.0% | |
TGCTTCATAAGTGATATGTG+AGG | + | chr2_1:77108984-77109003 | None:intergenic | 35.0% | |
GAGAGCTTATGAAAATAAGC+TGG | - | chr2_1:77109295-77109314 | Msa0226590:intron | 35.0% | |
! | GCTTATTTGAGTTTACCTAC+CGG | + | chr2_1:77109366-77109385 | None:intergenic | 35.0% |
TCAAATAAGCCAATCCAAAC+AGG | - | chr2_1:77109376-77109395 | Msa0226590:CDS | 35.0% | |
CATTCTGTGCTATGAAGTTA+AGG | + | chr2_1:77109503-77109522 | None:intergenic | 35.0% | |
CAGTAATATGAGGATGTGAA+TGG | + | chr2_1:77109567-77109586 | None:intergenic | 35.0% | |
AATATCGAAACAATGGGAGA+CGG | + | chr2_1:77109627-77109646 | None:intergenic | 35.0% | |
TTAGTTGTTTGTGCTTGGAT+TGG | - | chr2_1:77109679-77109698 | Msa0226590:intron | 35.0% | |
GAACTGAATCCTAATGTGTA+TGG | - | chr2_1:77109703-77109722 | Msa0226590:intron | 35.0% | |
CCTTCAATTGATGTTGAAGT+TGG | + | chr2_1:77109906-77109925 | None:intergenic | 35.0% | |
CCAACTTCAACATCAATTGA+AGG | - | chr2_1:77109903-77109922 | Msa0226590:intron | 35.0% | |
AATCAAATATGTTGCTGGAG+AGG | - | chr2_1:77109950-77109969 | Msa0226590:intron | 35.0% | |
TTCAATGTATTCAAGCATCC+AGG | - | chr2_1:77110040-77110059 | Msa0226590:intron | 35.0% | |
!!! | TTTGGATAGGGTTTTAGAGT+GGG | + | chr2_1:77110072-77110091 | None:intergenic | 35.0% |
!!! | TTTTGGATAGGGTTTTAGAG+TGG | + | chr2_1:77110073-77110092 | None:intergenic | 35.0% |
!! | CGACAGATTTACTTTGGTTT+TGG | + | chr2_1:77110090-77110109 | None:intergenic | 35.0% |
TCTAACTAACTCACAGACAA+AGG | - | chr2_1:77110152-77110171 | Msa0226590:intron | 35.0% | |
CTAACTAACTCACAGACAAA+GGG | - | chr2_1:77110153-77110172 | Msa0226590:intron | 35.0% | |
TAACTAACTCACAGACAAAG+GGG | - | chr2_1:77110154-77110173 | Msa0226590:intron | 35.0% | |
ATTTGCATCAGCCAAATGAT+AGG | + | chr2_1:77110184-77110203 | None:intergenic | 35.0% | |
GGGTATTATTCAGTGATTTG+TGG | + | chr2_1:77110363-77110382 | None:intergenic | 35.0% | |
AAAGGTTACAGTAGAATGCA+GGG | + | chr2_1:77110383-77110402 | None:intergenic | 35.0% | |
TCTACTGTAACCTTTCTGAA+TGG | - | chr2_1:77110388-77110407 | Msa0226590:CDS | 35.0% | |
!! | TCAAGTTGAACCATTCAGAA+AGG | + | chr2_1:77110401-77110420 | None:intergenic | 35.0% |
GATAATTGTACATGCCATGT+AGG | + | chr2_1:77110432-77110451 | None:intergenic | 35.0% | |
!! | ATCACAAACTTTTGAGGAAG+AGG | + | chr2_1:77110695-77110714 | None:intergenic | 35.0% |
TTCCTCAAAAGTTTGTGATC+TGG | - | chr2_1:77110696-77110715 | Msa0226590:intron | 35.0% | |
! | AACCAGATCACAAACTTTTG+AGG | + | chr2_1:77110701-77110720 | None:intergenic | 35.0% |
CTTCTTGATTCTGGGTTTAT+TGG | - | chr2_1:77110889-77110908 | Msa0226590:intron | 35.0% | |
TTACAACGAAGATGCAAACA+AGG | - | chr2_1:77110927-77110946 | Msa0226590:CDS | 35.0% | |
!! | CTTTTATTTACAGGAGACAG+AGG | + | chr2_1:77111110-77111129 | None:intergenic | 35.0% |
! | GTTAAATTCTCTGAGGAACT+TGG | + | chr2_1:77111158-77111177 | None:intergenic | 35.0% |
AACAAGATCTGGTTACTTCA+AGG | - | chr2_1:77111178-77111197 | Msa0226590:intron | 35.0% | |
ACAAGATCTGGTTACTTCAA+GGG | - | chr2_1:77111179-77111198 | Msa0226590:intron | 35.0% | |
ACTGTTGTCTATTCTTCATG+GGG | + | chr2_1:77111291-77111310 | None:intergenic | 35.0% | |
ATTTGAATGCAGAACATGGT+GGG | - | chr2_1:77111329-77111348 | Msa0226590:intron | 35.0% | |
GAGTGAAGTTCTTAAAGATC+AGG | - | chr2_1:77111385-77111404 | Msa0226590:intron | 35.0% | |
!! | TCCTTTATACTGGGTTTTGT+AGG | - | chr2_1:77111417-77111436 | Msa0226590:intron | 35.0% |
GATCTTATGGAAATGTGTTC+AGG | - | chr2_1:77111466-77111485 | Msa0226590:intron | 35.0% | |
! | TTGTAATTTTTCCTAGGGTG+GGG | - | chr2_1:77111593-77111612 | Msa0226590:intron | 35.0% |
! | TTTTACACTCCCTAGATAGT+TGG | + | chr2_1:77111661-77111680 | None:intergenic | 35.0% |
! | TATCTAGGGAGTGTAAAAGA+TGG | - | chr2_1:77111663-77111682 | Msa0226590:intron | 35.0% |
CATACTTTCTGACATATCCA+TGG | + | chr2_1:77111736-77111755 | None:intergenic | 35.0% | |
!!! | GACAATTTAGGCGTGTTTTT+TGG | - | chr2_1:77111841-77111860 | Msa0226590:intron | 35.0% |
!!! | TTAGGCGTGTTTTTTGGATT+TGG | - | chr2_1:77111847-77111866 | Msa0226590:intron | 35.0% |
TAGTATATAAAGCTCAACCC+AGG | - | chr2_1:77111918-77111937 | Msa0226590:intron | 35.0% | |
TGCCATTAGAGACTGAAATT+AGG | - | chr2_1:77111979-77111998 | Msa0226590:intron | 35.0% | |
AAATTAGGAAGATTAAGGGG+AGG | - | chr2_1:77111994-77112013 | Msa0226590:intron | 35.0% | |
AATTAGGAAGATTAAGGGGA+GGG | - | chr2_1:77111995-77112014 | Msa0226590:intron | 35.0% | |
AAGGAAAGCTTCATAAGCAA+AGG | + | chr2_1:77112127-77112146 | None:intergenic | 35.0% | |
TTTGCTTATGAAGCTTTCCT+TGG | - | chr2_1:77112126-77112145 | Msa0226590:intron | 35.0% | |
GGCATTTCATATATACTTGG+TGG | + | chr2_1:77112169-77112188 | None:intergenic | 35.0% | |
TAGAAATATAATCATGCGGG+GGG | - | chr2_1:77112219-77112238 | Msa0226590:intron | 35.0% | |
CAAGATAGTTTCTCCATCTT+AGG | - | chr2_1:77112411-77112430 | Msa0226590:intron | 35.0% | |
TGGTGCAGAGTATATTAGAA+AGG | - | chr2_1:77112462-77112481 | Msa0226590:intron | 35.0% | |
!! | AGGTTGATAAAAGACAAGGA+TGG | + | chr2_1:77112508-77112527 | None:intergenic | 35.0% |
AGATCCTTGTATGATGATAG+CGG | + | chr2_1:77112538-77112557 | None:intergenic | 35.0% | |
GCAACATGTACTATTTGAAG+AGG | - | chr2_1:77112558-77112577 | Msa0226590:CDS | 35.0% | |
AAGCCATCTTGCAAAATACA+AGG | - | chr2_1:77112599-77112618 | Msa0226590:CDS | 35.0% | |
GCCATTTGTTTGTACTTTGT+AGG | - | chr2_1:77112738-77112757 | Msa0226590:intron | 35.0% | |
CCCTACAAAGTACAAACAAA+TGG | + | chr2_1:77112742-77112761 | None:intergenic | 35.0% | |
TTGTTTGTACTTTGTAGGGA+TGG | - | chr2_1:77112743-77112762 | Msa0226590:intron | 35.0% | |
TGTTTGTACTTTGTAGGGAT+GGG | - | chr2_1:77112744-77112763 | Msa0226590:intron | 35.0% | |
ATACTCAATCAACTTGCACA+AGG | + | chr2_1:77112819-77112838 | None:intergenic | 35.0% | |
!! | TGTGCAAGTTGATTGAGTAT+TGG | - | chr2_1:77112819-77112838 | Msa0226590:intron | 35.0% |
CTCTTAAGATACTGACAACA+TGG | + | chr2_1:77113037-77113056 | None:intergenic | 35.0% | |
CATGTTGTCAGTATCTTAAG+AGG | - | chr2_1:77113035-77113054 | Msa0226590:intron | 35.0% | |
TTGTCAGTATCTTAAGAGGT+TGG | - | chr2_1:77113039-77113058 | Msa0226590:intron | 35.0% | |
ACATAGGACATGATAGAAGA+GGG | + | chr2_1:77113171-77113190 | None:intergenic | 35.0% | |
TACATAGGACATGATAGAAG+AGG | + | chr2_1:77113172-77113191 | None:intergenic | 35.0% | |
! | ATTGTTATCCTTTTCTGCTC+CGG | + | chr2_1:77113545-77113564 | None:intergenic | 35.0% |
! | CGATGCTCAGTGAAATATTT+TGG | - | chr2_1:77113694-77113713 | Msa0226590:five_prime_UTR | 35.0% |
!! | TGACTTGGCCATTTTATTCT+TGG | - | chr2_1:77113754-77113773 | Msa0226590:five_prime_UTR | 35.0% |
ATCTCAATGACATTCATGGT+TGG | - | chr2_1:77113794-77113813 | Msa0226590:five_prime_UTR | 35.0% | |
! | TGTTTCTGACTAGACAGTTG+AGG | - | chr2_1:77108408-77108427 | Msa0226590:three_prime_UTR | 40.0% |
TAGACAGTTGAGGTTGAAGA+AGG | - | chr2_1:77108418-77108437 | Msa0226590:three_prime_UTR | 40.0% | |
GAGATTATGGGTCTTCTTCT+TGG | - | chr2_1:77108628-77108647 | Msa0226590:CDS | 40.0% | |
! | GAGTGTGACTGCATTGATAT+GGG | - | chr2_1:77108787-77108806 | Msa0226590:CDS | 40.0% |
! | AGTGTGACTGCATTGATATG+GGG | - | chr2_1:77108788-77108807 | Msa0226590:CDS | 40.0% |
TCACTTATGAAGCAGAGACA+CGG | - | chr2_1:77108990-77109009 | Msa0226590:intron | 40.0% | |
TTCTGCAGAGCATATCACTT+AGG | - | chr2_1:77109135-77109154 | Msa0226590:intron | 40.0% | |
ATTAAACACATGGGCCTGTT+TGG | + | chr2_1:77109393-77109412 | None:intergenic | 40.0% | |
CACAGAATGACTGTTACAAC+TGG | - | chr2_1:77109514-77109533 | Msa0226590:intron | 40.0% | |
TTACAACTGGAAGAACAACG+AGG | - | chr2_1:77109527-77109546 | Msa0226590:intron | 40.0% | |
TACAACTGGAAGAACAACGA+GGG | - | chr2_1:77109528-77109547 | Msa0226590:intron | 40.0% | |
AAGTACATACCGACATGTGA+AGG | + | chr2_1:77109595-77109614 | None:intergenic | 40.0% | |
CACATGTCGGTATGTACTTT+CGG | - | chr2_1:77109596-77109615 | Msa0226590:CDS | 40.0% | |
ACATGTCGGTATGTACTTTC+GGG | - | chr2_1:77109597-77109616 | Msa0226590:CDS | 40.0% | |
ATATCGAAACAATGGGAGAC+GGG | + | chr2_1:77109626-77109645 | None:intergenic | 40.0% | |
!!! | TTTTAGAGTGGGAGATAACC+TGG | + | chr2_1:77110061-77110080 | None:intergenic | 40.0% |
AACTAACTCACAGACAAAGG+GGG | - | chr2_1:77110155-77110174 | Msa0226590:intron | 40.0% | |
AAAGGGGGTTTCCTATCATT+TGG | - | chr2_1:77110170-77110189 | Msa0226590:intron | 40.0% | |
GAAAGGTTACAGTAGAATGC+AGG | + | chr2_1:77110384-77110403 | None:intergenic | 40.0% | |
!! | AGGTTGAAAGGCTTTTTAGC+AGG | - | chr2_1:77110606-77110625 | Msa0226590:intron | 40.0% |
!! | TGCTTGTTATCACGTTGGAT+AGG | - | chr2_1:77110738-77110757 | Msa0226590:intron | 40.0% |
AACGAAGATGCAAACAAGGT+TGG | - | chr2_1:77110931-77110950 | Msa0226590:CDS | 40.0% | |
ATTGCTTTCCAGTCATCTGA+TGG | - | chr2_1:77111056-77111075 | Msa0226590:CDS | 40.0% | |
! | TTTACAGGAGACAGAGGTAT+GGG | + | chr2_1:77111104-77111123 | None:intergenic | 40.0% |
ATTTACAGGAGACAGAGGTA+TGG | + | chr2_1:77111105-77111124 | None:intergenic | 40.0% | |
CATTTGAATGCAGAACATGG+TGG | - | chr2_1:77111328-77111347 | Msa0226590:intron | 40.0% | |
GCCTACAAAACCCAGTATAA+AGG | + | chr2_1:77111421-77111440 | None:intergenic | 40.0% | |
! | TGTAATTTTTCCTAGGGTGG+GGG | - | chr2_1:77111594-77111613 | Msa0226590:intron | 40.0% |
! | GGATATGTCAGAAAGTATGC+AGG | - | chr2_1:77111737-77111756 | Msa0226590:intron | 40.0% |
ACCTCATGTCCATATTTGAG+CGG | + | chr2_1:77111773-77111792 | None:intergenic | 40.0% | |
TGACCTGGTGATAAATGTCT+GGG | - | chr2_1:77111941-77111960 | Msa0226590:intron | 40.0% | |
!! | TCATACTGAGGAGCATTCTA+GGG | + | chr2_1:77112096-77112115 | None:intergenic | 40.0% |
!! | ATCATACTGAGGAGCATTCT+AGG | + | chr2_1:77112097-77112116 | None:intergenic | 40.0% |
! | ATATACTTGGTGGAACAGTG+TGG | + | chr2_1:77112159-77112178 | None:intergenic | 40.0% |
! | TAACACATATTTGGTGGCAG+TGG | - | chr2_1:77112442-77112461 | Msa0226590:intron | 40.0% |
! | CCACCTTGTATTTTGCAAGA+TGG | + | chr2_1:77112605-77112624 | None:intergenic | 40.0% |
CCATCTTGCAAAATACAAGG+TGG | - | chr2_1:77112602-77112621 | Msa0226590:CDS | 40.0% | |
! | CTACATCTAAAGCGCTACAT+AGG | + | chr2_1:77113187-77113206 | None:intergenic | 40.0% |
GATGAACTTCCTCGATGTAT+GGG | + | chr2_1:77113453-77113472 | None:intergenic | 40.0% | |
AGATGAACTTCCTCGATGTA+TGG | + | chr2_1:77113454-77113473 | None:intergenic | 40.0% | |
CAGAGTTCAAGTGAATCTCT+TGG | - | chr2_1:77113492-77113511 | Msa0226590:intron | 40.0% | |
! | CAAACTAGCAAATTTTGCGG+AGG | + | chr2_1:77113670-77113689 | None:intergenic | 40.0% |
TACCTGTGTACAATTGTGAG+TGG | - | chr2_1:77113731-77113750 | Msa0226590:five_prime_UTR | 40.0% | |
TACAATTGTGAGTGGTGACT+TGG | - | chr2_1:77113739-77113758 | Msa0226590:five_prime_UTR | 40.0% | |
!! | CTTGGCCATTTTATTCTTGG+AGG | - | chr2_1:77113757-77113776 | Msa0226590:five_prime_UTR | 40.0% |
ACAGTTGAGGTTGAAGAAGG+AGG | - | chr2_1:77108421-77108440 | Msa0226590:three_prime_UTR | 45.0% | |
TCTTCTTCTTGGCGATATCC+AGG | - | chr2_1:77108639-77108658 | Msa0226590:CDS | 45.0% | |
! | GGAGTGTGACTGCATTGATA+TGG | - | chr2_1:77108786-77108805 | Msa0226590:CDS | 45.0% |
CACTTATGAAGCAGAGACAC+GGG | - | chr2_1:77108991-77109010 | Msa0226590:intron | 45.0% | |
ACTTATGAAGCAGAGACACG+GGG | - | chr2_1:77108992-77109011 | Msa0226590:intron | 45.0% | |
TGGCATGTTGACACAAGTAG+TGG | - | chr2_1:77109023-77109042 | Msa0226590:intron | 45.0% | |
CATATCACTTAGGCCCTGTT+TGG | - | chr2_1:77109145-77109164 | Msa0226590:intron | 45.0% | |
GTTCTCACAACTGCTTAAGC+CGG | - | chr2_1:77109344-77109363 | Msa0226590:CDS | 45.0% | |
GGCCCATGTGTTTAATGCAA+TGG | - | chr2_1:77109397-77109416 | Msa0226590:intron | 45.0% | |
GAAGGCAGGACAGTAATATG+AGG | + | chr2_1:77109577-77109596 | None:intergenic | 45.0% | |
CGTGCTCGACAGATTTACTT+TGG | + | chr2_1:77110096-77110115 | None:intergenic | 45.0% | |
!! | GATTTGTGGAGAAGTGTCTG+AGG | + | chr2_1:77110349-77110368 | None:intergenic | 45.0% |
!! | CAGCATGCTTGTTATCACGT+TGG | - | chr2_1:77110733-77110752 | Msa0226590:intron | 45.0% |
! | TTTTGTAGATGTGCGGACTC+AGG | - | chr2_1:77110855-77110874 | Msa0226590:intron | 45.0% |
TCTGCTTTCCATCAGATGAC+TGG | + | chr2_1:77111067-77111086 | None:intergenic | 45.0% | |
GAAATGTGTTCAGGCCCTAA+AGG | - | chr2_1:77111475-77111494 | Msa0226590:intron | 45.0% | |
TACTGGTGGGACATCCTTTA+GGG | + | chr2_1:77111492-77111511 | None:intergenic | 45.0% | |
ATACTGGTGGGACATCCTTT+AGG | + | chr2_1:77111493-77111512 | None:intergenic | 45.0% | |
! | GTAATTTTTCCTAGGGTGGG+GGG | - | chr2_1:77111595-77111614 | Msa0226590:intron | 45.0% |
AATGCCGATGCCAACTATCT+AGG | - | chr2_1:77111648-77111667 | Msa0226590:intron | 45.0% | |
ATGCCGATGCCAACTATCTA+GGG | - | chr2_1:77111649-77111668 | Msa0226590:intron | 45.0% | |
ACTCCCTAGATAGTTGGCAT+CGG | + | chr2_1:77111655-77111674 | None:intergenic | 45.0% | |
AGCTATGCACCGCTCAAATA+TGG | - | chr2_1:77111761-77111780 | Msa0226590:intron | 45.0% | |
ACCGCTCAAATATGGACATG+AGG | - | chr2_1:77111769-77111788 | Msa0226590:intron | 45.0% | |
ATCTTGTCCCCTTGCACAAA+AGG | - | chr2_1:77111874-77111893 | Msa0226590:intron | 45.0% | |
TCTTGTCCCCTTGCACAAAA+GGG | - | chr2_1:77111875-77111894 | Msa0226590:intron | 45.0% | |
CATTTATCACCAGGTCACCT+GGG | + | chr2_1:77111938-77111957 | None:intergenic | 45.0% | |
ACATTTATCACCAGGTCACC+TGG | + | chr2_1:77111939-77111958 | None:intergenic | 45.0% | |
GTGACCTGGTGATAAATGTC+TGG | - | chr2_1:77111940-77111959 | Msa0226590:intron | 45.0% | |
CTACCCAGACATTTATCACC+AGG | + | chr2_1:77111947-77111966 | None:intergenic | 45.0% | |
AAGGCAGCAGAATCATACTG+AGG | + | chr2_1:77112108-77112127 | None:intergenic | 45.0% | |
AATATAATCATGCGGGGGGA+AGG | - | chr2_1:77112223-77112242 | Msa0226590:intron | 45.0% | |
!! | ATGATGATAGCGGCGAATCA+AGG | + | chr2_1:77112528-77112547 | None:intergenic | 45.0% |
TTCGCCGCTATCATCATACA+AGG | - | chr2_1:77112531-77112550 | Msa0226590:intron | 45.0% | |
ACACCACACTTCGACTTATC+AGG | - | chr2_1:77112790-77112809 | Msa0226590:intron | 45.0% | |
AAGCCTGATAAGTCGAAGTG+TGG | + | chr2_1:77112796-77112815 | None:intergenic | 45.0% | |
!! | TCTTGAAGTGCGTTGATTGC+AGG | + | chr2_1:77112943-77112962 | None:intergenic | 45.0% |
! | TAAACTTGCTTCACTCCCTC+TGG | + | chr2_1:77113388-77113407 | None:intergenic | 45.0% |
AGAGGGAGTGAAGCAAGTTT+AGG | - | chr2_1:77113387-77113406 | Msa0226590:intron | 45.0% | |
TATGGGAGATGCAACTTGAC+GGG | + | chr2_1:77113436-77113455 | None:intergenic | 45.0% | |
GTATGGGAGATGCAACTTGA+CGG | + | chr2_1:77113437-77113456 | None:intergenic | 45.0% | |
! | TCAAAGAGTGTAGCTAGTCC+TGG | - | chr2_1:77113516-77113535 | Msa0226590:CDS | 45.0% |
CACCACTCACAATTGTACAC+AGG | + | chr2_1:77113736-77113755 | None:intergenic | 45.0% | |
! | CGTCGATCAGACCTTGTTTG+AGG | + | chr2_1:77108821-77108840 | None:intergenic | 50.0% |
TCACAACTGCTTAAGCCGGT+AGG | - | chr2_1:77109348-77109367 | Msa0226590:CDS | 50.0% | |
ACACATGGGCCTGTTTGGAT+TGG | + | chr2_1:77109388-77109407 | None:intergenic | 50.0% | |
GGAAGAACAACGAGGGTGAT+AGG | - | chr2_1:77109535-77109554 | Msa0226590:intron | 50.0% | |
ACTGTCCTGCCTTCACATGT+CGG | - | chr2_1:77109583-77109602 | Msa0226590:CDS | 50.0% | |
ACATACCGACATGTGAAGGC+AGG | + | chr2_1:77109591-77109610 | None:intergenic | 50.0% | |
ACTTGAGCACATGCCCTACA+TGG | - | chr2_1:77110415-77110434 | Msa0226590:CDS | 50.0% | |
AATCACCAGTGTCCTGCTCT+GGG | + | chr2_1:77111211-77111230 | None:intergenic | 50.0% | |
! | ACTGGTGATTCGAGAAGTGC+TGG | - | chr2_1:77111221-77111240 | Msa0226590:CDS | 50.0% |
!! | GAGAAGTGCTGGTGCTAGTA+AGG | - | chr2_1:77111232-77111251 | Msa0226590:CDS | 50.0% |
TGGGGGGAGATCTTCAGAAT+TGG | - | chr2_1:77111611-77111630 | Msa0226590:intron | 50.0% | |
GGGGGGAGATCTTCAGAATT+GGG | - | chr2_1:77111612-77111631 | Msa0226590:intron | 50.0% | |
GGGGGAGATCTTCAGAATTG+GGG | - | chr2_1:77111613-77111632 | Msa0226590:intron | 50.0% | |
!! | CATCGCAGTTGATGATCCCA+TGG | - | chr2_1:77111716-77111735 | Msa0226590:intron | 50.0% |
! | TGTGCTCCCTTTTGTGCAAG+GGG | + | chr2_1:77111884-77111903 | None:intergenic | 50.0% |
! | CTGTGCTCCCTTTTGTGCAA+GGG | + | chr2_1:77111885-77111904 | None:intergenic | 50.0% |
! | ACTGTGCTCCCTTTTGTGCA+AGG | + | chr2_1:77111886-77111905 | None:intergenic | 50.0% |
! | TTGCACAAAAGGGAGCACAG+TGG | - | chr2_1:77111885-77111904 | Msa0226590:intron | 50.0% |
!! | TACTGAGGAGCATTCTAGGG+AGG | + | chr2_1:77112093-77112112 | None:intergenic | 50.0% |
AACAGTGTGGAACTGTGCCA+AGG | + | chr2_1:77112146-77112165 | None:intergenic | 50.0% | |
AAGGATGGCAGCACATGAAG+GGG | + | chr2_1:77112493-77112512 | None:intergenic | 50.0% | |
CAAGGATGGCAGCACATGAA+GGG | + | chr2_1:77112494-77112513 | None:intergenic | 50.0% | |
ACAAGGATGGCAGCACATGA+AGG | + | chr2_1:77112495-77112514 | None:intergenic | 50.0% | |
GTGTGGTGTATGAAAGCGAG+TGG | + | chr2_1:77112779-77112798 | None:intergenic | 50.0% | |
GAGTGAAGAAGCCAAGAGTC+TGG | - | chr2_1:77113344-77113363 | Msa0226590:CDS | 50.0% | |
TGAAGAAGCCAAGAGTCTGG+AGG | - | chr2_1:77113347-77113366 | Msa0226590:CDS | 50.0% | |
ATGGGAGATGCAACTTGACG+GGG | + | chr2_1:77113435-77113454 | None:intergenic | 50.0% | |
GTTGCATCTCCCATACATCG+AGG | - | chr2_1:77113441-77113460 | Msa0226590:intron | 50.0% | |
CTCTGCGAGTTTCTTTGACG+AGG | + | chr2_1:77113477-77113496 | None:intergenic | 50.0% | |
AGGTTGAAGAAGGAGGCGAG+AGG | - | chr2_1:77108428-77108447 | Msa0226590:three_prime_UTR | 55.0% | |
GGTTGAAGAAGGAGGCGAGA+GGG | - | chr2_1:77108429-77108448 | Msa0226590:three_prime_UTR | 55.0% | |
GGGGTGCATCTCCTCAAACA+AGG | - | chr2_1:77108807-77108826 | Msa0226590:CDS | 55.0% | |
GAAGCAGCAGCCAACTGTTC+AGG | + | chr2_1:77108866-77108885 | None:intergenic | 55.0% | |
CAACACGTGTCTAACACCGC+AGG | + | chr2_1:77109084-77109103 | None:intergenic | 55.0% | |
! | CTGCGGTGTTAGACACGTGT+TGG | - | chr2_1:77109082-77109101 | Msa0226590:intron | 55.0% |
GAACAACGAGGGTGATAGGC+TGG | - | chr2_1:77109539-77109558 | Msa0226590:CDS | 55.0% | |
GAATCACCAGTGTCCTGCTC+TGG | + | chr2_1:77111212-77111231 | None:intergenic | 55.0% | |
AAAGCTCAACCCAGGTGACC+TGG | - | chr2_1:77111926-77111945 | Msa0226590:intron | 55.0% | |
AGAAGCCAAGAGTCTGGAGG+CGG | - | chr2_1:77113350-77113369 | Msa0226590:CDS | 55.0% | |
ACGGGGAGAAGCAACTTGAC+GGG | + | chr2_1:77113418-77113437 | None:intergenic | 55.0% | |
GACGGGGAGAAGCAACTTGA+CGG | + | chr2_1:77113419-77113438 | None:intergenic | 55.0% | |
GTGTAGCTAGTCCTGGTAGC+CGG | - | chr2_1:77113523-77113542 | Msa0226590:CDS | 55.0% | |
CAAGGGAGATAGCCCAGAGC+AGG | - | chr2_1:77111196-77111215 | Msa0226590:intron | 60.0% | |
GATAGCCCAGAGCAGGACAC+TGG | - | chr2_1:77111203-77111222 | Msa0226590:intron | 60.0% | |
TGAAGATCTCCCCCCACCCT+AGG | + | chr2_1:77111607-77111626 | None:intergenic | 60.0% | |
!! | TGCGGGGGGAAGGTATTGTG+TGG | - | chr2_1:77112233-77112252 | Msa0226590:intron | 60.0% |
!! | CGGAGGCATCTACGTCCAGA+GGG | - | chr2_1:77113370-77113389 | Msa0226590:intron | 60.0% |
CGGGGAGAAGCAACTTGACG+GGG | + | chr2_1:77113417-77113436 | None:intergenic | 60.0% | |
! | CCTTTTCTGCTCCGGCTACC+AGG | + | chr2_1:77113537-77113556 | None:intergenic | 60.0% |
CCTGGTAGCCGGAGCAGAAA+AGG | - | chr2_1:77113534-77113553 | Msa0226590:CDS | 60.0% | |
AGAGACACGGGGCACGACAC+TGG | - | chr2_1:77109003-77109022 | Msa0226590:intron | 65.0% | |
AGCCAAGAGTCTGGAGGCGG+AGG | - | chr2_1:77113353-77113372 | Msa0226590:CDS | 65.0% | |
TGCCTCCGCCTCCAGACTCT+TGG | + | chr2_1:77113358-77113377 | None:intergenic | 65.0% | |
!! | GCGGAGGCATCTACGTCCAG+AGG | - | chr2_1:77113369-77113388 | Msa0226590:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_1 | gene | 77108305 | 77113854 | 77108305 | ID=Msa0226590;Name=Msa0226590 |
chr2_1 | mRNA | 77108305 | 77113854 | 77108305 | ID=Msa0226590-mRNA-1;Parent=Msa0226590;Name=Msa0226590-mRNA-1;_AED=0.14;_eAED=0.14;_QI=245|0.77|0.7|1|0.77|0.7|10|294|428 |
chr2_1 | exon | 77108305 | 77108826 | 77108305 | ID=Msa0226590-mRNA-1:exon:23412;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77109172 | 77109226 | 77109172 | ID=Msa0226590-mRNA-1:exon:23411;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77109334 | 77109399 | 77109334 | ID=Msa0226590-mRNA-1:exon:23410;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77109539 | 77109697 | 77109539 | ID=Msa0226590-mRNA-1:exon:23409;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77110369 | 77110550 | 77110369 | ID=Msa0226590-mRNA-1:exon:23408;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77110906 | 77111121 | 77110906 | ID=Msa0226590-mRNA-1:exon:23407;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77111211 | 77111296 | 77111211 | ID=Msa0226590-mRNA-1:exon:23406;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77112555 | 77112640 | 77112555 | ID=Msa0226590-mRNA-1:exon:23405;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77113289 | 77113386 | 77113289 | ID=Msa0226590-mRNA-1:exon:23404;Parent=Msa0226590-mRNA-1 |
chr2_1 | exon | 77113499 | 77113854 | 77113499 | ID=Msa0226590-mRNA-1:exon:23403;Parent=Msa0226590-mRNA-1 |
chr2_1 | five_prime_UTR | 77113610 | 77113854 | 77113610 | ID=Msa0226590-mRNA-1:five_prime_utr;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77113499 | 77113609 | 77113499 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77113289 | 77113386 | 77113289 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77112555 | 77112640 | 77112555 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77111211 | 77111296 | 77111211 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77110906 | 77111121 | 77110906 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77110369 | 77110550 | 77110369 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77109539 | 77109697 | 77109539 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77109334 | 77109399 | 77109334 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77109172 | 77109226 | 77109172 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | CDS | 77108599 | 77108826 | 77108599 | ID=Msa0226590-mRNA-1:cds;Parent=Msa0226590-mRNA-1 |
chr2_1 | three_prime_UTR | 77108305 | 77108598 | 77108305 | ID=Msa0226590-mRNA-1:three_prime_utr;Parent=Msa0226590-mRNA-1 |
Gene Sequence |
Protein sequence |