AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532990 MtrunA17_Chr4g0006391 99.413 341 2 0 1 341 1 341 0.0 692
Msa0532990 MtrunA17_Chr2g0282741 70.640 344 91 4 1 339 1 339 1.01e-170 478
Msa0532990 MtrunA17_Chr4g0040501 67.236 351 100 4 1 341 1 346 7.89e-170 476
Msa0532990 MtrunA17_Chr2g0324921 63.143 350 103 5 1 339 1 335 1.49e-153 434
Msa0532990 MtrunA17_Chr2g0282761 60.290 345 118 6 1 332 1 339 8.91e-136 389
Msa0532990 MtrunA17_Chr3g0138471 58.235 340 125 5 1 338 1 325 1.00e-128 371
Msa0532990 MtrunA17_Chr3g0093111 42.029 345 158 4 3 339 1 311 5.46e-97 290
Msa0532990 MtrunA17_Chr5g0415751 57.931 145 61 0 194 338 16 160 1.20e-56 181
Msa0532990 MtrunA17_Chr7g0269841 37.318 343 180 8 5 338 27 343 8.15e-55 182
Msa0532990 MtrunA17_Chr2g0277721 44.624 186 102 1 154 338 74 259 1.12e-47 162
Msa0532990 MtrunA17_Chr3g0124801 41.837 196 107 2 147 341 105 294 7.85e-46 157
Msa0532990 MtrunA17_Chr8g0334811 29.208 404 160 12 5 338 15 362 2.41e-36 135
Msa0532990 MtrunA17_Chr3g0123861 28.689 366 209 13 3 337 81 425 9.52e-32 123
Msa0532990 MtrunA17_Chr5g0426951 29.480 346 216 12 4 332 83 417 1.27e-26 109
Msa0532990 MtrunA17_Chr6g0478651 27.056 377 214 11 2 339 66 420 3.37e-26 108
Msa0532990 MtrunA17_Chr3g0091351 46.875 96 51 0 224 319 2 97 3.61e-26 100
Msa0532990 MtrunA17_Chr2g0322181 36.232 138 86 1 203 338 221 358 1.28e-24 103
Msa0532990 MtrunA17_Chr2g0322181 56.338 71 26 1 5 75 14 79 2.41e-12 67.4
Msa0532990 MtrunA17_Chr4g0025401 35.507 138 87 1 203 338 219 356 1.05e-23 100
Msa0532990 MtrunA17_Chr4g0025401 52.113 71 29 1 5 75 14 79 7.38e-11 62.8
Msa0532990 MtrunA17_Chr3g0087741 30.028 353 211 11 4 337 89 424 2.18e-23 100
Msa0532990 MtrunA17_Chr5g0415731 54.667 75 27 1 4 71 5 79 1.21e-20 87.0
Msa0532990 MtrunA17_Chr4g0010781 26.149 348 220 11 5 331 87 418 5.92e-20 90.5
Msa0532990 MtrunA17_Chr3g0091361 49.367 79 40 0 3 81 4 82 1.99e-19 85.5
Msa0532990 MtrunA17_Chr7g0263971 55.385 65 29 0 4 68 369 433 2.58e-19 88.6
Msa0532990 MtrunA17_Chr2g0333221 41.803 122 51 4 4 125 70 171 6.34e-19 87.4
Msa0532990 MtrunA17_Chr4g0021141 55.224 67 29 1 4 70 22 87 8.62e-18 79.0
Msa0532990 MtrunA17_Chr7g0271891 54.545 66 27 1 5 67 17 82 4.75e-17 77.4
Msa0532990 MtrunA17_Chr1g0159491 44.444 72 39 1 3 74 5 75 5.92e-16 72.0
Msa0532990 MtrunA17_Chr5g0399201 47.297 74 37 1 4 75 12 85 1.01e-15 78.2
Msa0532990 MtrunA17_Chr1g0209551 49.296 71 35 1 4 74 16 85 2.28e-15 76.6
Msa0532990 MtrunA17_Chr5g0427221 51.562 64 30 1 4 67 48 110 3.71e-15 72.0
Msa0532990 MtrunA17_Chr7g0242951 50.000 70 33 1 3 72 26 93 5.93e-15 75.9
Msa0532990 MtrunA17_Chr5g0414471 49.315 73 36 1 4 76 25 96 2.30e-14 73.6
Msa0532990 MtrunA17_Chr8g0344721 46.377 69 32 1 4 67 10 78 4.51e-14 70.9
Msa0532990 MtrunA17_Chr4g0044331 54.717 53 21 1 18 67 26 78 8.45e-14 68.2
Msa0532990 MtrunA17_Chr3g0132971 52.239 67 29 2 3 68 68 132 1.57e-13 69.3
Msa0532990 MtrunA17_Chr6g0460461 41.333 75 40 1 3 73 1 75 2.57e-13 68.2
Msa0532990 MtrunA17_Chr6g0460411 42.667 75 39 1 3 73 1 75 2.96e-13 68.2
Msa0532990 MtrunA17_Chr1g0173931 46.154 65 34 1 6 70 40 103 2.47e-12 66.6
Msa0532990 MtrunA17_Chr6g0460381 43.478 69 35 1 3 67 2 70 2.78e-12 65.1
Msa0532990 MtrunA17_Chr7g0258061 31.707 123 77 3 6 122 24 145 5.66e-12 65.5
Msa0532990 MtrunA17_Chr5g0393371 45.070 71 38 1 4 74 6 75 2.28e-11 64.3
Msa0532990 MtrunA17_Chr2g0286511 53.846 65 28 1 3 67 68 130 6.37e-11 63.9
Msa0532990 MtrunA17_Chr8g0352451 42.697 89 48 2 5 91 73 160 6.80e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532990 AT3G08910.1 77.843 343 54 5 1 341 1 323 0.0 519
Msa0532990 AT5G01390.1 75.294 340 77 4 1 339 1 334 2.80e-180 502
Msa0532990 AT2G20560.1 71.594 345 82 4 1 338 1 336 3.55e-174 487
Msa0532990 AT4G28480.1 67.705 353 93 4 1 338 1 347 3.58e-163 459
Msa0532990 AT4G28480.2 61.808 343 72 5 1 338 1 289 7.79e-137 390
Msa0532990 AT5G25530.2 58.166 349 125 6 1 339 1 338 4.25e-136 390
Msa0532990 AT5G25530.1 56.863 357 125 7 1 339 1 346 3.12e-133 384
Msa0532990 AT5G01390.2 60.933 343 63 5 1 339 1 276 2.85e-132 378
Msa0532990 AT1G10350.1 55.429 350 146 3 1 341 1 349 3.42e-128 371
Msa0532990 AT3G47940.1 52.162 370 121 5 1 338 1 346 2.91e-125 363
Msa0532990 AT1G59725.1 54.131 351 131 4 1 341 1 331 2.09e-123 358
Msa0532990 AT5G01390.3 53.392 339 56 5 1 339 1 237 6.76e-106 310
Msa0532990 AT2G20550.1 55.634 284 78 6 100 338 3 283 2.25e-96 287
Msa0532990 AT2G20550.2 55.634 284 78 6 100 338 3 283 2.25e-96 287
Msa0532990 AT5G01390.4 70.918 196 50 4 1 195 1 190 2.09e-84 255
Msa0532990 AT1G44160.1 43.644 236 120 3 111 341 129 356 5.05e-53 179
Msa0532990 AT3G62600.1 37.037 351 180 11 2 339 24 346 1.41e-51 174
Msa0532990 AT1G11040.1 39.604 202 107 1 146 332 225 426 1.98e-44 158
Msa0532990 AT5G22060.1 30.653 398 159 10 5 338 15 359 1.89e-36 136
Msa0532990 AT2G22360.1 29.091 385 182 13 3 337 85 428 2.12e-35 134
Msa0532990 AT5G48030.1 28.532 361 203 14 4 331 94 432 5.92e-26 108
Msa0532990 AT3G44110.1 35.507 138 87 1 203 338 221 358 3.60e-23 99.8
Msa0532990 AT1G80030.4 43.307 127 46 5 4 130 75 175 8.24e-21 93.6
Msa0532990 AT1G80030.2 43.307 127 46 5 4 130 75 175 1.12e-20 93.2
Msa0532990 AT1G80030.3 43.307 127 46 5 4 130 75 175 1.12e-20 93.2
Msa0532990 AT1G80030.1 43.307 127 46 5 4 130 75 175 1.12e-20 93.2
Msa0532990 AT3G17830.1 56.000 75 31 1 2 76 61 133 2.06e-19 89.4
Msa0532990 AT4G39960.1 50.588 85 36 2 4 88 85 163 8.86e-19 87.4
Msa0532990 AT4G39960.1 32.353 136 88 3 204 337 301 434 2.22e-14 74.3
Msa0532990 AT4G39960.2 50.588 85 36 2 4 88 85 163 8.86e-19 87.4
Msa0532990 AT4G39960.2 32.353 136 88 3 204 337 301 434 2.22e-14 74.3
Msa0532990 AT3G44110.2 36.111 108 67 1 203 308 221 328 1.08e-16 80.5
Msa0532990 AT5G03160.1 52.308 65 31 0 4 68 370 434 2.41e-16 80.1
Msa0532990 AT1G68370.1 52.113 71 33 1 4 74 17 86 5.61e-16 79.0
Msa0532990 AT1G56300.2 51.515 66 29 1 5 67 14 79 9.79e-16 73.2
Msa0532990 AT1G56300.1 51.515 66 29 1 5 67 14 79 1.14e-15 73.9
Msa0532990 AT5G16650.2 51.562 64 30 1 4 67 11 73 2.02e-15 73.6
Msa0532990 AT5G16650.1 51.562 64 30 1 4 67 11 73 2.84e-15 72.0
Msa0532990 AT1G59980.2 47.826 69 35 1 6 74 25 92 8.32e-15 75.1
Msa0532990 AT1G59980.1 47.826 69 35 1 6 74 25 92 1.63e-14 74.3
Msa0532990 AT2G41000.2 46.377 69 33 1 3 67 2 70 2.97e-14 71.2
Msa0532990 AT3G08970.1 49.333 75 34 2 3 77 26 96 4.18e-14 73.6
Msa0532990 AT3G08970.2 49.333 75 34 2 3 77 26 96 4.18e-14 73.6
Msa0532990 AT2G35720.1 45.205 73 38 1 4 74 15 87 5.17e-14 73.2
Msa0532990 AT2G41000.1 46.377 69 33 1 3 67 2 70 6.75e-14 69.7
Msa0532990 AT2G21510.3 46.914 81 41 2 4 83 6 85 9.73e-14 71.6
Msa0532990 AT2G21510.1 46.914 81 41 2 4 83 6 85 9.73e-14 71.6
Msa0532990 AT2G21510.2 46.914 81 41 2 4 83 6 85 9.87e-14 71.6
Msa0532990 AT2G21510.4 46.914 81 41 2 4 83 6 85 9.87e-14 71.6
Msa0532990 AT2G21510.5 46.914 81 41 2 4 83 6 85 1.33e-13 71.2
Msa0532990 AT1G24120.1 44.595 74 40 1 4 77 20 92 2.01e-13 71.2
Msa0532990 AT2G33735.1 46.154 65 34 1 4 68 22 85 2.73e-13 66.2
Msa0532990 AT2G33735.2 46.154 65 34 1 4 68 22 85 2.73e-13 66.2
Msa0532990 AT5G06910.1 49.231 65 32 1 6 70 31 94 8.39e-13 68.2
Msa0532990 AT1G71000.2 43.939 66 34 1 5 67 9 74 7.75e-12 63.5
Msa0532990 AT4G39150.3 43.210 81 44 2 4 83 6 85 1.13e-11 65.5
Msa0532990 AT4G39150.1 43.210 81 44 2 4 83 6 85 1.13e-11 65.5
Msa0532990 AT4G39150.2 43.210 81 44 2 4 83 6 85 1.13e-11 65.5
Msa0532990 AT1G71000.1 43.939 66 34 1 5 67 9 74 1.70e-11 62.4
Msa0532990 AT4G19570.1 51.515 66 30 1 3 68 65 128 2.78e-11 65.1
Msa0532990 AT3G12170.1 46.154 65 34 1 6 70 13 76 3.30e-11 63.5
Msa0532990 AT1G21080.3 41.250 80 46 1 4 83 6 84 3.67e-11 64.3
Msa0532990 AT1G21080.1 40.741 81 47 1 3 83 5 84 3.98e-11 63.9
Msa0532990 AT5G05750.1 37.273 110 61 3 4 113 114 215 4.67e-11 63.2
Msa0532990 AT3G12170.2 46.154 65 34 1 6 70 49 112 5.74e-11 63.2

Find 112 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAGATTTGCTTGAATT+TGG 0.168588 4_1:+7617936 None:intergenic
TCAGCATCTTTCTTGTTATT+AGG 0.176740 4_1:+7617961 None:intergenic
CAGCATCTTTCTTGTTATTA+GGG 0.208495 4_1:+7617962 None:intergenic
TCCCATCGAGGGTAGCTATT+TGG 0.216321 4_1:+7614906 None:intergenic
TCCTAAGGAACCTTCCAAAA+AGG 0.245405 4_1:-7614807 Msa0532990:CDS
TTGGTGTGTGTTTGCATATT+TGG 0.254785 4_1:-7614460 Msa0532990:three_prime_UTR
GCTTTCCGAGGGGAATGTTT+AGG 0.274668 4_1:-7616684 Msa0532990:CDS
CTTTCCGAGGGGAATGTTTA+GGG 0.283758 4_1:-7616683 Msa0532990:CDS
CCCATCGAGGGTAGCTATTT+GGG 0.309339 4_1:+7614907 None:intergenic
TCATATGAAGAAGTAATTAA+AGG 0.309573 4_1:-7614845 Msa0532990:CDS
ATCTAACACATCTTCATATA+TGG 0.310157 4_1:+7614669 None:intergenic
TGCTCTGATGTAAGTCTTGA+TGG 0.316745 4_1:+7614752 None:intergenic
AGTTTGGAGGATTTGTATAA+AGG 0.321209 4_1:-7616568 Msa0532990:CDS
TGGCGGTGGAATGGGTGATA+TGG 0.323498 4_1:-7616728 Msa0532990:CDS
CTCTGTTCATTTCCCTTCTC+CGG 0.330584 4_1:+7615058 None:intergenic
ATATGAAGATGTGTTAGATT+TGG 0.333768 4_1:-7614665 Msa0532990:three_prime_UTR
AAACAAGGTCTGCAGGTATA+AGG 0.341570 4_1:+7615032 None:intergenic
TCTTCTTCAAATCGGATTCA+TGG 0.343612 4_1:-7618088 Msa0532990:exon
TTGTTATTAGGGTTCTTATC+AGG 0.349663 4_1:+7617973 None:intergenic
GTTTGGAGGATTTGTATAAA+GGG 0.350475 4_1:-7616567 Msa0532990:CDS
TTTAGTTATGTGAAAAGTTT+TGG 0.352721 4_1:-7614479 Msa0532990:three_prime_UTR
AGAATTTCCTCAACTGTAGT+AGG 0.358832 4_1:+7615130 None:intergenic
TTTCTCTTCCTTTAGGAATT+CGG 0.359374 4_1:-7616653 Msa0532990:CDS
TTGGAAGGTTCCTTAGGAAT+TGG 0.363891 4_1:+7614812 None:intergenic
GGTGGTCATCCTGGTGCATC+TGG 0.369509 4_1:-7616706 Msa0532990:CDS
GAGAACATTGCCTTGCAGTT+TGG 0.378422 4_1:-7616584 Msa0532990:CDS
TTCGGGTTTCAAAGACCATT+TGG 0.392906 4_1:-7616748 Msa0532990:CDS
TTAATTACTTCTTCATATGA+TGG 0.396614 4_1:+7614848 None:intergenic
AGACCATTTGGCGGTGGAAT+GGG 0.427291 4_1:-7616736 Msa0532990:CDS
GTGTACATCAATTGATGAAA+TGG 0.429386 4_1:+7614392 None:intergenic
ATCGCAAACTTGCTATGAAA+TGG 0.429662 4_1:-7617999 Msa0532990:CDS
GGTGATATGGGTGGTCATCC+TGG 0.434210 4_1:-7616715 Msa0532990:CDS
CTTCTTCAAATCGGATTCAT+GGG 0.435276 4_1:-7618087 Msa0532990:exon
GGCGGTGGAATGGGTGATAT+GGG 0.438794 4_1:-7616727 Msa0532990:CDS
ATGGTGGACCGACAATGTTC+CGG 0.441258 4_1:-7616810 Msa0532990:CDS
ATCAAGCCAGGTTGGAAGAA+AGG 0.451023 4_1:-7615097 Msa0532990:CDS
AAGACCATTTGGCGGTGGAA+TGG 0.454672 4_1:-7616737 Msa0532990:CDS
ATATGGTGAGGAGGGGTTGA+AGG 0.458111 4_1:-7616878 Msa0532990:CDS
TCGGAAAATCCACCTGCACC+TGG 0.462806 4_1:+7616841 None:intergenic
GTGTAAAAGAAATATCCAAA+TGG 0.464648 4_1:+7618162 None:intergenic
TTCAATCAATTGGAAATTCG+TGG 0.470850 4_1:-7614621 Msa0532990:three_prime_UTR
TTTGTTCCTTTCTTCCAACC+TGG 0.471768 4_1:+7615091 None:intergenic
AATATGTCATCCGCACTTCT+CGG 0.475047 4_1:+7616781 None:intergenic
CCGCACTTCTCGGATTGAAC+CGG 0.478831 4_1:+7616791 None:intergenic
CTAACAATTGAGATCAAGCC+AGG 0.485097 4_1:-7615109 Msa0532990:CDS
AACATTGCCTTGCAGTTTGG+AGG 0.487226 4_1:-7616581 Msa0532990:CDS
TGTAAAAGAAATATCCAAAT+GGG 0.492699 4_1:+7618163 None:intergenic
GGATTGAACCGGAACATTGT+CGG 0.505215 4_1:+7616802 None:intergenic
AGAGCTGTGTATGATCAATA+TGG 0.509203 4_1:-7616895 Msa0532990:CDS
CAAGGCAATGTTCTCTCTAT+CGG 0.510097 4_1:+7616592 None:intergenic
GCTGGAATCAGTAACATCTC+TGG 0.511627 4_1:+7616522 None:intergenic
CCTCGATGGGAGGAATCTTA+CGG 0.515468 4_1:-7614894 Msa0532990:CDS
CCCAAATAGCTACCCTCGAT+GGG 0.515770 4_1:-7614907 Msa0532990:CDS
GGACTAATGATGGTGTTGAC+GGG 0.516562 4_1:+7614869 None:intergenic
TCCCTCTTGAAGACAGTATG+AGG 0.516733 4_1:+7614992 None:intergenic
AACACATCTTCATATATGGC+TGG 0.516749 4_1:+7614673 None:intergenic
TGGTGCATCTGGCTTTCCGA+GGG 0.518716 4_1:-7616695 Msa0532990:CDS
CGGAAAATCCACCTGCACCT+GGG 0.520170 4_1:+7616842 None:intergenic
TTTAGGAATTCGGCCGGTGA+AGG 0.528483 4_1:-7616643 Msa0532990:CDS
CTGGTGCATCTGGCTTTCCG+AGG 0.535834 4_1:-7616696 Msa0532990:CDS
TGAATAATTCTCTTAATCAC+TGG 0.536623 4_1:-7614506 Msa0532990:three_prime_UTR
GCCCAAATAGCTACCCTCGA+TGG 0.538402 4_1:-7614908 Msa0532990:CDS
TTCATATGATGGACTAATGA+TGG 0.538880 4_1:+7614859 None:intergenic
TTGCATTTCGATCTATCTGA+AGG 0.539158 4_1:+7618046 None:intergenic
CTCGGAAAGCCAGATGCACC+AGG 0.544371 4_1:+7616697 None:intergenic
CAATTGAGATCAAGCCAGGT+TGG 0.546154 4_1:-7615105 Msa0532990:CDS
TGGCTGGCCGGTACCACCAC+TGG 0.550664 4_1:+7614689 None:intergenic
TCACCCATTCCACCGCCAAA+TGG 0.551823 4_1:+7616733 None:intergenic
GGGTTTCAAAGACCATTTGG+CGG 0.553824 4_1:-7616745 Msa0532990:CDS
TGAAGAAGTAATTAAAGGAG+AGG 0.557340 4_1:-7614840 Msa0532990:CDS
AGAGGGTATGCCAATTCCTA+AGG 0.558236 4_1:-7614822 Msa0532990:CDS
TGTCAATAATCGCTTGATGC+CGG 0.560172 4_1:+7614724 None:intergenic
GTAAACACCAGTGGTGGTAC+CGG 0.565475 4_1:-7614696 Msa0532990:exon
AATTCCTAAAGGAAGAGAAA+AGG 0.566815 4_1:+7616656 None:intergenic
GGAAAATCCACCTGCACCTG+GGG 0.568173 4_1:+7616843 None:intergenic
TTTCAAAGACCATTTGGCGG+TGG 0.571030 4_1:-7616742 Msa0532990:CDS
TTCACCGGCCGAATTCCTAA+AGG 0.573122 4_1:+7616645 None:intergenic
TATGGTGAGGAGGGGTTGAA+GGG 0.576990 4_1:-7616877 Msa0532990:CDS
CATCTTCATATATGGCTGGC+CGG 0.580440 4_1:+7614677 None:intergenic
GAAGAAGTAATTAAAGGAGA+GGG 0.582830 4_1:-7614839 Msa0532990:CDS
CACATTGGCAGATCCTTCAC+CGG 0.582928 4_1:+7616630 None:intergenic
TCTCTTGTAGAAGCTCTGAC+AGG 0.585328 4_1:-7614938 Msa0532990:CDS
TGGACTAATGATGGTGTTGA+CGG 0.590380 4_1:+7614868 None:intergenic
TATGATCAATATGGTGAGGA+GGG 0.591969 4_1:-7616886 Msa0532990:CDS
TACAAATCCTCCAAACTGCA+AGG 0.594020 4_1:+7616574 None:intergenic
CTTACATCAGAGCAGAAGAC+CGG 0.597536 4_1:-7614743 Msa0532990:CDS
CGTAAGATTCCTCCCATCGA+GGG 0.600569 4_1:+7614895 None:intergenic
TCTTCCTTTAGGAATTCGGC+CGG 0.603452 4_1:-7616649 Msa0532990:CDS
ATGGTGAGGAGGGGTTGAAG+GGG 0.612762 4_1:-7616876 Msa0532990:CDS
GGTGGAATGGGTGATATGGG+TGG 0.613503 4_1:-7616724 Msa0532990:CDS
AAGGAAGCCTACTACAGTTG+AGG 0.616465 4_1:-7615137 Msa0532990:CDS
CATACTGTCTTCAAGAGGGA+CGG 0.632225 4_1:-7614989 Msa0532990:CDS
GCCTCATACTGTCTTCAAGA+GGG 0.644262 4_1:-7614993 Msa0532990:CDS
AGAGATGTTACTGATTCCAG+CGG 0.648475 4_1:-7616520 Msa0532990:CDS
TCTTTGAAACCCGAAGAACT+CGG 0.650196 4_1:+7616756 None:intergenic
GAGATGTTACTGATTCCAGC+GGG 0.654951 4_1:-7616519 Msa0532990:intron
TCATCCCTAAACATTCCCCT+CGG 0.655585 4_1:+7616679 None:intergenic
ATCTTCGTAAACACCAGTGG+TGG 0.656515 4_1:-7614702 Msa0532990:exon
AGCCTCATACTGTCTTCAAG+AGG 0.661585 4_1:-7614994 Msa0532990:CDS
CGGTCCACCATCACCACCGT+CGG 0.662709 4_1:+7616822 None:intergenic
GGTGCATCTGGCTTTCCGAG+GGG 0.666004 4_1:-7616694 Msa0532990:CDS
AAATAGCTACCCTCGATGGG+AGG 0.668540 4_1:-7614904 Msa0532990:CDS
CCGGTTCAATCCGAGAAGTG+CGG 0.669023 4_1:-7616791 Msa0532990:CDS
AAGGATCTGCCAATGTGATG+AGG 0.672645 4_1:-7616624 Msa0532990:CDS
CCGTAAGATTCCTCCCATCG+AGG 0.673715 4_1:+7614894 None:intergenic
GACATCTTCGTAAACACCAG+TGG 0.677032 4_1:-7614705 Msa0532990:exon
GTATGATCAATATGGTGAGG+AGG 0.684615 4_1:-7616887 Msa0532990:CDS
GACTAATGATGGTGTTGACG+GGG 0.692431 4_1:+7614870 None:intergenic
GAAAATCCACCTGCACCTGG+GGG 0.693417 4_1:+7616844 None:intergenic
TGTGTATGATCAATATGGTG+AGG 0.703352 4_1:-7616890 Msa0532990:CDS
GAGAAGGGAAATGAACAGAG+AGG 0.703900 4_1:-7615055 Msa0532990:CDS
ATGATCAATATGGTGAGGAG+GGG 0.712167 4_1:-7616885 Msa0532990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTTGATAATTTTAAT+TGG - chr4_1:7614698-7614717 Msa0532990:exon 10.0%
!!! CAATTTTGATAATTTTAATT+GGG - chr4_1:7614699-7614718 Msa0532990:exon 10.0%
!!! TTTGTAAAGTTTTGATTTTT+TGG - chr4_1:7614734-7614753 Msa0532990:CDS 15.0%
!!! TTGTAAAGTTTTGATTTTTT+GGG - chr4_1:7614735-7614754 Msa0532990:CDS 15.0%
!!! TGTGTTTAATTTTATGATTT+TGG - chr4_1:7615242-7615261 Msa0532990:intron 15.0%
!!! TTTTATGATTTTGGATAATT+TGG - chr4_1:7615251-7615270 Msa0532990:intron 15.0%
!! ATAAACAGCTTAATTATATT+AGG - chr4_1:7616275-7616294 Msa0532990:intron 15.0%
!! AAAGAATAATTTCATGAAAT+GGG + chr4_1:7616916-7616935 None:intergenic 15.0%
!!! TTGGAATTTAATTTTATTTG+CGG - chr4_1:7617926-7617945 Msa0532990:intron 15.0%
!!! TTTCATATTTTTTTAGTTTC+TGG - chr4_1:7618034-7618053 Msa0532990:CDS 15.0%
!! TGTAAAAGAAATATCCAAAT+GGG + chr4_1:7614412-7614431 None:intergenic 20.0%
!!! TGTAAAGTTTTGATTTTTTG+GGG - chr4_1:7614736-7614755 Msa0532990:CDS 20.0%
!!! TGTGTTTTTATTGTTGATTT+TGG - chr4_1:7614799-7614818 Msa0532990:CDS 20.0%
!!! ATTGTTGATTTTGGATAATT+TGG - chr4_1:7614808-7614827 Msa0532990:CDS 20.0%
!!! TTTGGATAATTTGGAAATTT+TGG - chr4_1:7614817-7614836 Msa0532990:CDS 20.0%
!!! TTGGATAATTTGGAAATTTT+GGG - chr4_1:7614818-7614837 Msa0532990:CDS 20.0%
!!! TTGTTATTTTCTTGTGATTT+AGG - chr4_1:7615447-7615466 Msa0532990:intron 20.0%
!!! TTTTTGTTTTGATTGTGATT+AGG - chr4_1:7615488-7615507 Msa0532990:intron 20.0%
!! AAATAATCAAATTTCCGTTA+AGG - chr4_1:7616243-7616262 Msa0532990:intron 20.0%
!! TGATACTTATAGTTCTTAAA+TGG - chr4_1:7616581-7616600 Msa0532990:CDS 20.0%
!! GAAAGAATAATTTCATGAAA+TGG + chr4_1:7616917-7616936 None:intergenic 20.0%
!!! ATTTTATGAGTAAATGACTT+TGG + chr4_1:7617092-7617111 None:intergenic 20.0%
!! TTAATTACTTCTTCATATGA+TGG + chr4_1:7617727-7617746 None:intergenic 20.0%
!! TCATATGAAGAAGTAATTAA+AGG - chr4_1:7617727-7617746 Msa0532990:intron 20.0%
!!! TTTAGTTATGTGAAAAGTTT+TGG - chr4_1:7618093-7618112 Msa0532990:five_prime_UTR 20.0%
! GTGTAAAAGAAATATCCAAA+TGG + chr4_1:7614413-7614432 None:intergenic 25.0%
!!! TTTTGATTTTTTGGGGTTTT+TGG - chr4_1:7614743-7614762 Msa0532990:CDS 25.0%
!!! TTTGATTTTTTGGGGTTTTT+GGG - chr4_1:7614744-7614763 Msa0532990:CDS 25.0%
!! TGGATAATTTGGAAATTTTG+GGG - chr4_1:7614819-7614838 Msa0532990:CDS 25.0%
!!! TGTGTTTTTCTTGTTGATTT+TGG - chr4_1:7614873-7614892 Msa0532990:CDS 25.0%
!!! TGGATCATTTGTTTGATTTT+TGG - chr4_1:7614893-7614912 Msa0532990:CDS 25.0%
!!! GGATCATTTGTTTGATTTTT+GGG - chr4_1:7614894-7614913 Msa0532990:CDS 25.0%
!!! GATCATTTGTTTGATTTTTG+GGG - chr4_1:7614895-7614914 Msa0532990:CDS 25.0%
!!! GTTTTTTTCGTTGTTGATTT+TGG - chr4_1:7614956-7614975 Msa0532990:CDS 25.0%
!!! ATTTGGAATTGTGAAGTTTT+AGG - chr4_1:7615048-7615067 Msa0532990:CDS 25.0%
!!! TTTGGAATTGTGAAGTTTTA+GGG - chr4_1:7615049-7615068 Msa0532990:CDS 25.0%
!! TTGTGTTTTTCTTGTGATTT+TGG - chr4_1:7615103-7615122 Msa0532990:CDS 25.0%
!!! AGGTTTACAATTTTAGCTTA+TGG - chr4_1:7615148-7615167 Msa0532990:intron 25.0%
!!! GGTTTACAATTTTAGCTTAT+GGG - chr4_1:7615149-7615168 Msa0532990:intron 25.0%
!!! GTTTACAATTTTAGCTTATG+GGG - chr4_1:7615150-7615169 Msa0532990:intron 25.0%
!! TTTTGTGATTTTGGATCATT+TGG - chr4_1:7615180-7615199 Msa0532990:intron 25.0%
!!! TTTTGGATAATTTGGAATTG+TGG - chr4_1:7615259-7615278 Msa0532990:intron 25.0%
!! TTTGGATAATTTGGAATTGT+GGG - chr4_1:7615260-7615279 Msa0532990:intron 25.0%
!! TTGTGTTTTTCTTGTGATTT+AGG - chr4_1:7615103-7615122 Msa0532990:CDS 25.0%
! TTAGGATTACTTGGAAATTT+CGG - chr4_1:7615333-7615352 Msa0532990:intron 25.0%
!!! GGTGTTTAATTTTGTGTTTT+TGG - chr4_1:7614861-7614880 Msa0532990:CDS 25.0%
!!! TGAGATGTTTTTGAAATGTT+GGG - chr4_1:7615554-7615573 Msa0532990:intron 25.0%
!! TCTTGTGATTTAGAATCATT+TGG - chr4_1:7615595-7615614 Msa0532990:intron 25.0%
!! TTAGAATCATTTGGAATTGT+TGG - chr4_1:7615604-7615623 Msa0532990:intron 25.0%
!!! TCTGGAAATCTTCATTTTTT+TGG + chr4_1:7616035-7616054 None:intergenic 25.0%
!!! TGTATTTTGTTATGTGTTGT+TGG - chr4_1:7616175-7616194 Msa0532990:intron 25.0%
!!! GTTGTTTTCATAAGCTATAT+TGG - chr4_1:7616360-7616379 Msa0532990:intron 25.0%
! AATAAGCTAAAAACAGCTTA+TGG - chr4_1:7616395-7616414 Msa0532990:intron 25.0%
! GAATGAAATAGCATATAGAA+AGG + chr4_1:7616619-7616638 None:intergenic 25.0%
!! CAAAATAATTCTTCTTTTGC+TGG - chr4_1:7616638-7616657 Msa0532990:CDS 25.0%
! ATAAACATGATGAAGAATGT+TGG + chr4_1:7616694-7616713 None:intergenic 25.0%
! TGCAATAAGACATGTTTAAA+TGG - chr4_1:7616806-7616825 Msa0532990:CDS 25.0%
!!! TAGAAAGTGTTGTCATATAA+CGG + chr4_1:7617252-7617271 None:intergenic 25.0%
!! TGTATGTTTTCTTATTCTGA+AGG - chr4_1:7617416-7617435 Msa0532990:intron 25.0%
! ATCTAACACATCTTCATATA+TGG + chr4_1:7617906-7617925 None:intergenic 25.0%
! ATATGAAGATGTGTTAGATT+TGG - chr4_1:7617907-7617926 Msa0532990:intron 25.0%
!!! TTGTGAACTAGTTTTTAACT+AGG - chr4_1:7617977-7617996 Msa0532990:CDS 25.0%
! TGAATAATTCTCTTAATCAC+TGG - chr4_1:7618066-7618085 Msa0532990:CDS 25.0%
!! AACTTTTCACATAACTAAAC+AGG + chr4_1:7618092-7618111 None:intergenic 25.0%
! TATCACATTTTTCACCCATT+TGG - chr4_1:7614395-7614414 Msa0532990:three_prime_UTR 30.0%
CTTCTTCTTCTTCTTCAAAT+CGG - chr4_1:7614476-7614495 Msa0532990:three_prime_UTR 30.0%
! TTGTTATTAGGGTTCTTATC+AGG + chr4_1:7614602-7614621 None:intergenic 30.0%
!! CAGCATCTTTCTTGTTATTA+GGG + chr4_1:7614613-7614632 None:intergenic 30.0%
!! TCAGCATCTTTCTTGTTATT+AGG + chr4_1:7614614-7614633 None:intergenic 30.0%
! TTCAGAGATTTGCTTGAATT+TGG + chr4_1:7614639-7614658 None:intergenic 30.0%
!!! TTGATTTTTTGGGGTTTTTG+GGG - chr4_1:7614745-7614764 Msa0532990:CDS 30.0%
! GGATAATTTGGAAATTTTGG+GGG - chr4_1:7614820-7614839 Msa0532990:CDS 30.0%
!!! ATTTTTGGGGTTGCATAATT+TGG - chr4_1:7614908-7614927 Msa0532990:CDS 30.0%
! GTTGCATAATTTGGAATGTT+GGG - chr4_1:7614917-7614936 Msa0532990:CDS 30.0%
! TTGCATAATTTGGAATGTTG+GGG - chr4_1:7614918-7614937 Msa0532990:CDS 30.0%
!!! GTTGTTGATTTTGGATCATT+TGG - chr4_1:7614965-7614984 Msa0532990:CDS 30.0%
! TTTGGATCATTTGGACATTT+TGG - chr4_1:7614974-7614993 Msa0532990:CDS 30.0%
! TTGGATCATTTGGACATTTT+GGG - chr4_1:7614975-7614994 Msa0532990:CDS 30.0%
!! GTGTTTGATTTTGGATCATT+TGG - chr4_1:7615031-7615050 Msa0532990:CDS 30.0%
!!! GAAGTTTTAGGGTTACAATT+TGG - chr4_1:7615060-7615079 Msa0532990:CDS 30.0%
! TTCTTGTGATTTTGGACATT+TGG - chr4_1:7615111-7615130 Msa0532990:CDS 30.0%
!!! ATTTGGAGTTTTGAGGTTTT+AGG - chr4_1:7615128-7615147 Msa0532990:CDS 30.0%
!! GGTGTTTGATTTTGTGATTT+TGG - chr4_1:7615171-7615190 Msa0532990:intron 30.0%
! ATTTGGAATTGTGAAGTTTC+AGG - chr4_1:7615197-7615216 Msa0532990:intron 30.0%
! TTTGGAATTGTGAAGTTTCA+GGG - chr4_1:7615198-7615217 Msa0532990:intron 30.0%
! AGGGTTACAATTTGGAATTA+AGG - chr4_1:7615217-7615236 Msa0532990:intron 30.0%
! TCTTGTGATTTAGGATTACT+TGG - chr4_1:7615324-7615343 Msa0532990:intron 30.0%
TAGGATTACTTGGAAATTTC+GGG - chr4_1:7615334-7615353 Msa0532990:intron 30.0%
! GGTTACAATTTGGAATTATG+AGG - chr4_1:7615356-7615375 Msa0532990:intron 30.0%
!!! TTTTGTGTTTTTGGATCAGT+TGG - chr4_1:7615386-7615405 Msa0532990:intron 30.0%
! TTTTGGATCAGTTGGATTTT+TGG - chr4_1:7615394-7615413 Msa0532990:intron 30.0%
! TTTGGATCAGTTGGATTTTT+GGG - chr4_1:7615395-7615414 Msa0532990:intron 30.0%
! TGGGTTACAATTTGAAATGT+TGG - chr4_1:7615414-7615433 Msa0532990:intron 30.0%
! GGGTTACAATTTGAAATGTT+GGG - chr4_1:7615415-7615434 Msa0532990:intron 30.0%
! GGTTACAATTTGAAATGTTG+GGG - chr4_1:7615416-7615435 Msa0532990:intron 30.0%
! GTTACAATTTGAAATGTTGG+GGG - chr4_1:7615417-7615436 Msa0532990:intron 30.0%
! TCTTGTGATTTAGGATCATT+TGG - chr4_1:7615456-7615475 Msa0532990:intron 30.0%
!!! GTGAGATGTTTTTGAAATGT+TGG - chr4_1:7615553-7615572 Msa0532990:intron 30.0%
!!! GAGATGTTTTTGAAATGTTG+GGG - chr4_1:7615555-7615574 Msa0532990:intron 30.0%
! AGTGATTTCGATTTGTGAAT+AGG - chr4_1:7615634-7615653 Msa0532990:intron 30.0%
AATTCCTAAAGGAAGAGAAA+AGG + chr4_1:7615919-7615938 None:intergenic 30.0%
! TTTCTCTTCCTTTAGGAATT+CGG - chr4_1:7615919-7615938 Msa0532990:intron 30.0%
AGTTTGGAGGATTTGTATAA+AGG - chr4_1:7616004-7616023 Msa0532990:intron 30.0%
GTTTGGAGGATTTGTATAAA+GGG - chr4_1:7616005-7616024 Msa0532990:intron 30.0%
!!! GGAAATCTTCATTTTTTTGG+TGG + chr4_1:7616032-7616051 None:intergenic 30.0%
CAATGCAACTAGGTTAATAT+AGG + chr4_1:7616104-7616123 None:intergenic 30.0%
CTATATTAACCTAGTTGCAT+TGG - chr4_1:7616102-7616121 Msa0532990:intron 30.0%
TCAAATAAGCCAATCTAAAC+AGG - chr4_1:7616486-7616505 Msa0532990:intron 30.0%
TTATTATGGCCTGTTTAGAT+TGG + chr4_1:7616498-7616517 None:intergenic 30.0%
!! CAAAATCTGCCACTTTATTA+TGG + chr4_1:7616512-7616531 None:intergenic 30.0%
GTGATGTGATGTAACTATTA+AGG - chr4_1:7616759-7616778 Msa0532990:CDS 30.0%
TTGTCTAAAAAACTTGAGTC+TGG + chr4_1:7616860-7616879 None:intergenic 30.0%
TATTAGAGCTGTGAATTGAA+TGG - chr4_1:7617377-7617396 Msa0532990:intron 30.0%
! AGGAACAAAGATAACTTTTC+CGG - chr4_1:7617495-7617514 Msa0532990:intron 30.0%
ATAATAAAAACAAGGTCTGC+AGG + chr4_1:7617550-7617569 None:intergenic 30.0%
TCTCGTCGATAATAAAAACA+AGG + chr4_1:7617558-7617577 None:intergenic 30.0%
!! TTCATATGATGGACTAATGA+TGG + chr4_1:7617716-7617735 None:intergenic 30.0%
TGAAGAAGTAATTAAAGGAG+AGG - chr4_1:7617732-7617751 Msa0532990:intron 30.0%
GAAGAAGTAATTAAAGGAGA+GGG - chr4_1:7617733-7617752 Msa0532990:intron 30.0%
! ATTTGCGGTTTTCAATCAAT+TGG - chr4_1:7617941-7617960 Msa0532990:CDS 30.0%
TTCAATCAATTGGAAATTCG+TGG - chr4_1:7617951-7617970 Msa0532990:CDS 30.0%
GTGTACATCAATTGATGAAA+TGG + chr4_1:7618183-7618202 None:intergenic 30.0%
GGGTGAAAAATGTGATATCT+GGG + chr4_1:7614392-7614411 None:intergenic 35.0%
TGGGTGAAAAATGTGATATC+TGG + chr4_1:7614393-7614412 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + chr4_1:7614472-7614491 None:intergenic 35.0%
TCTTCTTCAAATCGGATTCA+TGG - chr4_1:7614484-7614503 Msa0532990:three_prime_UTR 35.0%
CTTCTTCAAATCGGATTCAT+GGG - chr4_1:7614485-7614504 Msa0532990:three_prime_UTR 35.0%
TTGCATTTCGATCTATCTGA+AGG + chr4_1:7614529-7614548 None:intergenic 35.0%
!! ATCGCAAACTTGCTATGAAA+TGG - chr4_1:7614573-7614592 Msa0532990:three_prime_UTR 35.0%
GGGGTACAATTTGAATTGAT+GGG - chr4_1:7614839-7614858 Msa0532990:CDS 35.0%
GGGTACAATTTGAATTGATG+GGG - chr4_1:7614840-7614859 Msa0532990:CDS 35.0%
! GGTTGCATAATTTGGAATGT+TGG - chr4_1:7614916-7614935 Msa0532990:CDS 35.0%
! TGCATAATTTGGAATGTTGG+GGG - chr4_1:7614919-7614938 Msa0532990:CDS 35.0%
! TGGATCATTTGGACATTTTG+GGG - chr4_1:7614976-7614995 Msa0532990:CDS 35.0%
!!! TTTGGACATTTTGGGGTTTT+TGG - chr4_1:7614983-7615002 Msa0532990:CDS 35.0%
!!! TTGGACATTTTGGGGTTTTT+GGG - chr4_1:7614984-7615003 Msa0532990:CDS 35.0%
!!! TTGCAAGCAATTTTAGCTGA+TGG - chr4_1:7615007-7615026 Msa0532990:CDS 35.0%
!!! TGCAAGCAATTTTAGCTGAT+GGG - chr4_1:7615008-7615027 Msa0532990:CDS 35.0%
! AGGGTTACAATTTGGAATGA+TGG - chr4_1:7615068-7615087 Msa0532990:CDS 35.0%
! GGGTTACAATTTGGAATGAT+GGG - chr4_1:7615069-7615088 Msa0532990:CDS 35.0%
! GGTTACAATTTGGAATGATG+GGG - chr4_1:7615070-7615089 Msa0532990:CDS 35.0%
!! TTTGGACATTTGGAGTTTTG+AGG - chr4_1:7615121-7615140 Msa0532990:CDS 35.0%
GAAGTTTCAGGGTTACAATT+TGG - chr4_1:7615209-7615228 Msa0532990:intron 35.0%
!! TTTGGAATTGTGGGTTTTTC+CGG - chr4_1:7615269-7615288 Msa0532990:intron 35.0%
AACCAATCCAAATTGTAACC+CGG + chr4_1:7615291-7615310 None:intergenic 35.0%
AGGATTACTTGGAAATTTCG+GGG - chr4_1:7615335-7615354 Msa0532990:intron 35.0%
GAAATTTCGGGGTTACAATT+TGG - chr4_1:7615346-7615365 Msa0532990:intron 35.0%
AGAGCTGTGTATGATCAATA+TGG - chr4_1:7615677-7615696 Msa0532990:intron 35.0%
TGTGTATGATCAATATGGTG+AGG - chr4_1:7615682-7615701 Msa0532990:intron 35.0%
TATGATCAATATGGTGAGGA+GGG - chr4_1:7615686-7615705 Msa0532990:intron 35.0%
! GACATATTTTCCGAGTTCTT+CGG - chr4_1:7615806-7615825 Msa0532990:intron 35.0%
! ACATATTTTCCGAGTTCTTC+GGG - chr4_1:7615807-7615826 Msa0532990:intron 35.0%
! ATGACCTTTTCTCTTCCTTT+AGG - chr4_1:7615912-7615931 Msa0532990:intron 35.0%
CCAATAAAACCAATGCAACT+AGG + chr4_1:7616114-7616133 None:intergenic 35.0%
!!! CCTAGTTGCATTGGTTTTAT+TGG - chr4_1:7616111-7616130 Msa0532990:intron 35.0%
ATTAAGCTGTTTATCCGAAC+AGG + chr4_1:7616269-7616288 None:intergenic 35.0%
TTATGGAAACAGCTTATGAC+AGG + chr4_1:7616422-7616441 None:intergenic 35.0%
TAAAGACTTGTGAGTCTGTT+TGG + chr4_1:7616451-7616470 None:intergenic 35.0%
CTAAACAGGCCATAATAAAG+TGG - chr4_1:7616500-7616519 Msa0532990:intron 35.0%
! GCTTCAGTTCTACTATTTTC+TGG + chr4_1:7617015-7617034 None:intergenic 35.0%
GATGTATTCAAAAGCTGTGT+TGG - chr4_1:7617177-7617196 Msa0532990:intron 35.0%
AGAATTTCCTCAACTGTAGT+AGG + chr4_1:7617445-7617464 None:intergenic 35.0%
! AAAGATAACTTTTCCGGAGA+AGG - chr4_1:7617501-7617520 Msa0532990:intron 35.0%
! AAGATAACTTTTCCGGAGAA+GGG - chr4_1:7617502-7617521 Msa0532990:intron 35.0%
AACACATCTTCATATATGGC+TGG + chr4_1:7617902-7617921 None:intergenic 35.0%
TTGGTGTGTGTTTGCATATT+TGG - chr4_1:7618112-7618131 Msa0532990:five_prime_UTR 35.0%
! TGGGGTTGTAATTTGCATGT+TGG - chr4_1:7614763-7614782 Msa0532990:CDS 40.0%
! GGGGTTGTAATTTGCATGTT+GGG - chr4_1:7614764-7614783 Msa0532990:CDS 40.0%
! GGGGGTACAATTTGAATTGA+TGG - chr4_1:7614838-7614857 Msa0532990:CDS 40.0%
! ATAATTTGGAATGTTGGGGG+TGG - chr4_1:7614922-7614941 Msa0532990:CDS 40.0%
!!! GCAAGCAATTTTAGCTGATG+GGG - chr4_1:7615009-7615028 Msa0532990:CDS 40.0%
! TTGGAATTGTGGGTTTTTCC+GGG - chr4_1:7615270-7615289 Msa0532990:intron 40.0%
! GGTTTTTCCGGGTTACAATT+TGG - chr4_1:7615281-7615300 Msa0532990:intron 40.0%
TTCCGGGTTACAATTTGGAT+TGG - chr4_1:7615286-7615305 Msa0532990:intron 40.0%
TGATCATACACCTCTCTCTT+TGG + chr4_1:7615528-7615547 None:intergenic 40.0%
! AGAGAGGTGTATGATCAGTA+TGG - chr4_1:7615531-7615550 Msa0532990:intron 40.0%
! TCATACACAGCTCTCTTTTG+TGG + chr4_1:7615671-7615690 None:intergenic 40.0%
GTATGATCAATATGGTGAGG+AGG - chr4_1:7615685-7615704 Msa0532990:intron 40.0%
ATGATCAATATGGTGAGGAG+GGG - chr4_1:7615687-7615706 Msa0532990:intron 40.0%
AATATGTCATCCGCACTTCT+CGG + chr4_1:7615794-7615813 None:intergenic 40.0%
!! TCTTTGAAACCCGAAGAACT+CGG + chr4_1:7615819-7615838 None:intergenic 40.0%
! TTCGGGTTTCAAAGACCATT+TGG - chr4_1:7615824-7615843 Msa0532990:intron 40.0%
! TGCACTTTTCCTCATCACAT+TGG + chr4_1:7615960-7615979 None:intergenic 40.0%
CAAGGCAATGTTCTCTCTAT+CGG + chr4_1:7615983-7616002 None:intergenic 40.0%
TACAAATCCTCCAAACTGCA+AGG + chr4_1:7616001-7616020 None:intergenic 40.0%
!! AGAGATGTTACTGATTCCAG+CGG - chr4_1:7616052-7616071 Msa0532990:intron 40.0%
AATTTCCGTTAAGGCCTGTT+CGG - chr4_1:7616252-7616271 Msa0532990:intron 40.0%
TTTATCCGAACAGGCCTTAA+CGG + chr4_1:7616260-7616279 None:intergenic 40.0%
AGTCTGTTTGGAAGAGCTTA+TGG + chr4_1:7616439-7616458 None:intergenic 40.0%
! TAAAGTGGCAGATTTTGCGA+TGG - chr4_1:7616515-7616534 Msa0532990:intron 40.0%
CCTTCAATTTCCTACAGCAT+CGG + chr4_1:7616954-7616973 None:intergenic 40.0%
!! GTTCTACTATTTTCTGGCAC+AGG + chr4_1:7617009-7617028 None:intergenic 40.0%
TTAAAATTCCGCTGTGCTGT+AGG - chr4_1:7617305-7617324 Msa0532990:intron 40.0%
TAAAATTCCGCTGTGCTGTA+GGG - chr4_1:7617306-7617325 Msa0532990:intron 40.0%
CTAACAATTGAGATCAAGCC+AGG - chr4_1:7617463-7617482 Msa0532990:intron 40.0%
TTTGTTCCTTTCTTCCAACC+TGG + chr4_1:7617484-7617503 None:intergenic 40.0%
AAACAAGGTCTGCAGGTATA+AGG + chr4_1:7617543-7617562 None:intergenic 40.0%
! TGGACTAATGATGGTGTTGA+CGG + chr4_1:7617707-7617726 None:intergenic 40.0%
TTGGAAGGTTCCTTAGGAAT+TGG + chr4_1:7617763-7617782 None:intergenic 40.0%
TCCTAAGGAACCTTCCAAAA+AGG - chr4_1:7617765-7617784 Msa0532990:intron 40.0%
CCTAAGGAACCTTCCAAAAA+GGG - chr4_1:7617766-7617785 Msa0532990:intron 40.0%
! CTCAAGTTTCCCTTTTTGGA+AGG + chr4_1:7617778-7617797 None:intergenic 40.0%
! GACTCTCAAGTTTCCCTTTT+TGG + chr4_1:7617782-7617801 None:intergenic 40.0%
TGCTCTGATGTAAGTCTTGA+TGG + chr4_1:7617823-7617842 None:intergenic 40.0%
TGTCAATAATCGCTTGATGC+CGG + chr4_1:7617851-7617870 None:intergenic 40.0%
!! GCTGATGGGGTGTTTGATTT+TGG - chr4_1:7615022-7615041 Msa0532990:CDS 45.0%
GAGTGATCAACCAAAGAGAG+AGG - chr4_1:7615515-7615534 Msa0532990:intron 45.0%
GGATTGAACCGGAACATTGT+CGG + chr4_1:7615773-7615792 None:intergenic 45.0%
GGGTTTCAAAGACCATTTGG+CGG - chr4_1:7615827-7615846 Msa0532990:intron 45.0%
TTTCAAAGACCATTTGGCGG+TGG - chr4_1:7615830-7615849 Msa0532990:intron 45.0%
CTTTCCGAGGGGAATGTTTA+GGG - chr4_1:7615889-7615908 Msa0532990:intron 45.0%
TCATCCCTAAACATTCCCCT+CGG + chr4_1:7615896-7615915 None:intergenic 45.0%
! TCTTCCTTTAGGAATTCGGC+CGG - chr4_1:7615923-7615942 Msa0532990:intron 45.0%
AAGGATCTGCCAATGTGATG+AGG - chr4_1:7615948-7615967 Msa0532990:intron 45.0%
GAGAACATTGCCTTGCAGTT+TGG - chr4_1:7615988-7616007 Msa0532990:intron 45.0%
AACATTGCCTTGCAGTTTGG+AGG - chr4_1:7615991-7616010 Msa0532990:intron 45.0%
GCTGGAATCAGTAACATCTC+TGG + chr4_1:7616053-7616072 None:intergenic 45.0%
!! GAGATGTTACTGATTCCAGC+GGG - chr4_1:7616053-7616072 Msa0532990:intron 45.0%
AAACTAGAAAACTCACCCGC+TGG + chr4_1:7616071-7616090 None:intergenic 45.0%
CCGATGCTGTAGGAAATTGA+AGG - chr4_1:7616951-7616970 Msa0532990:intron 45.0%
AAGGAAGCCTACTACAGTTG+AGG - chr4_1:7617435-7617454 Msa0532990:intron 45.0%
CAATTGAGATCAAGCCAGGT+TGG - chr4_1:7617467-7617486 Msa0532990:intron 45.0%
! ATCAAGCCAGGTTGGAAGAA+AGG - chr4_1:7617475-7617494 Msa0532990:intron 45.0%
CTCTGTTCATTTCCCTTCTC+CGG + chr4_1:7617517-7617536 None:intergenic 45.0%
GAGAAGGGAAATGAACAGAG+AGG - chr4_1:7617517-7617536 Msa0532990:intron 45.0%
AGCCTCATACTGTCTTCAAG+AGG - chr4_1:7617578-7617597 Msa0532990:intron 45.0%
GCCTCATACTGTCTTCAAGA+GGG - chr4_1:7617579-7617598 Msa0532990:intron 45.0%
TCCCTCTTGAAGACAGTATG+AGG + chr4_1:7617583-7617602 None:intergenic 45.0%
CATACTGTCTTCAAGAGGGA+CGG - chr4_1:7617583-7617602 Msa0532990:intron 45.0%
! TCTCTTGTAGAAGCTCTGAC+AGG - chr4_1:7617634-7617653 Msa0532990:intron 45.0%
!! GACTAATGATGGTGTTGACG+GGG + chr4_1:7617705-7617724 None:intergenic 45.0%
!! GGACTAATGATGGTGTTGAC+GGG + chr4_1:7617706-7617725 None:intergenic 45.0%
! AGAGGGTATGCCAATTCCTA+AGG - chr4_1:7617750-7617769 Msa0532990:intron 45.0%
!! CCCTTTTTGGAAGGTTCCTT+AGG + chr4_1:7617769-7617788 None:intergenic 45.0%
CTTACATCAGAGCAGAAGAC+CGG - chr4_1:7617829-7617848 Msa0532990:intron 45.0%
GACATCTTCGTAAACACCAG+TGG - chr4_1:7617867-7617886 Msa0532990:intron 45.0%
ATCTTCGTAAACACCAGTGG+TGG - chr4_1:7617870-7617889 Msa0532990:intron 45.0%
CATCTTCATATATGGCTGGC+CGG + chr4_1:7617898-7617917 None:intergenic 45.0%
ATATGGTGAGGAGGGGTTGA+AGG - chr4_1:7615694-7615713 Msa0532990:intron 50.0%
TATGGTGAGGAGGGGTTGAA+GGG - chr4_1:7615695-7615714 Msa0532990:intron 50.0%
!! ATGGTGGACCGACAATGTTC+CGG - chr4_1:7615762-7615781 Msa0532990:intron 50.0%
AAGACCATTTGGCGGTGGAA+TGG - chr4_1:7615835-7615854 Msa0532990:intron 50.0%
AGACCATTTGGCGGTGGAAT+GGG - chr4_1:7615836-7615855 Msa0532990:intron 50.0%
GCTTTCCGAGGGGAATGTTT+AGG - chr4_1:7615888-7615907 Msa0532990:intron 50.0%
TTCACCGGCCGAATTCCTAA+AGG + chr4_1:7615930-7615949 None:intergenic 50.0%
TTTAGGAATTCGGCCGGTGA+AGG - chr4_1:7615929-7615948 Msa0532990:intron 50.0%
CACATTGGCAGATCCTTCAC+CGG + chr4_1:7615945-7615964 None:intergenic 50.0%
CATTGTCTAGCCGATGCTGT+AGG - chr4_1:7616941-7616960 Msa0532990:intron 50.0%
! TGAGTATCGCAGAACAGCAG+CGG - chr4_1:7617278-7617297 Msa0532990:intron 50.0%
CCCATCGAGGGTAGCTATTT+GGG + chr4_1:7617668-7617687 None:intergenic 50.0%
CCCAAATAGCTACCCTCGAT+GGG - chr4_1:7617665-7617684 Msa0532990:intron 50.0%
TCCCATCGAGGGTAGCTATT+TGG + chr4_1:7617669-7617688 None:intergenic 50.0%
AAATAGCTACCCTCGATGGG+AGG - chr4_1:7617668-7617687 Msa0532990:intron 50.0%
CGTAAGATTCCTCCCATCGA+GGG + chr4_1:7617680-7617699 None:intergenic 50.0%
CCTCGATGGGAGGAATCTTA+CGG - chr4_1:7617678-7617697 Msa0532990:intron 50.0%
GTAAACACCAGTGGTGGTAC+CGG - chr4_1:7617876-7617895 Msa0532990:intron 50.0%
ATGGTGAGGAGGGGTTGAAG+GGG - chr4_1:7615696-7615715 Msa0532990:intron 55.0%
GAAAATCCACCTGCACCTGG+GGG + chr4_1:7615731-7615750 None:intergenic 55.0%
GGAAAATCCACCTGCACCTG+GGG + chr4_1:7615732-7615751 None:intergenic 55.0%
CGGAAAATCCACCTGCACCT+GGG + chr4_1:7615733-7615752 None:intergenic 55.0%
TCGGAAAATCCACCTGCACC+TGG + chr4_1:7615734-7615753 None:intergenic 55.0%
!! GGTGCAGGTGGATTTTCCGA+CGG - chr4_1:7615734-7615753 Msa0532990:intron 55.0%
! GGATTTTCCGACGGTGGTGA+TGG - chr4_1:7615743-7615762 Msa0532990:intron 55.0%
!!! TTTTCCGACGGTGGTGATGG+TGG - chr4_1:7615746-7615765 Msa0532990:intron 55.0%
CCGCACTTCTCGGATTGAAC+CGG + chr4_1:7615784-7615803 None:intergenic 55.0%
CCGGTTCAATCCGAGAAGTG+CGG - chr4_1:7615781-7615800 Msa0532990:intron 55.0%
TCACCCATTCCACCGCCAAA+TGG + chr4_1:7615842-7615861 None:intergenic 55.0%
TGGCGGTGGAATGGGTGATA+TGG - chr4_1:7615844-7615863 Msa0532990:intron 55.0%
GGCGGTGGAATGGGTGATAT+GGG - chr4_1:7615845-7615864 Msa0532990:intron 55.0%
GGTGGAATGGGTGATATGGG+TGG - chr4_1:7615848-7615867 Msa0532990:intron 55.0%
GGTGATATGGGTGGTCATCC+TGG - chr4_1:7615857-7615876 Msa0532990:intron 55.0%
!! TGGTGCATCTGGCTTTCCGA+GGG - chr4_1:7615877-7615896 Msa0532990:intron 55.0%
ATAGCAGCCCTACAGCACAG+CGG + chr4_1:7617316-7617335 None:intergenic 55.0%
GCCCAAATAGCTACCCTCGA+TGG - chr4_1:7617664-7617683 Msa0532990:intron 55.0%
CCGTAAGATTCCTCCCATCG+AGG + chr4_1:7617681-7617700 None:intergenic 55.0%
!! GCAGGTGGATTTTCCGACGG+TGG - chr4_1:7615737-7615756 Msa0532990:intron 60.0%
GGTGGTCATCCTGGTGCATC+TGG - chr4_1:7615866-7615885 Msa0532990:intron 60.0%
CTCGGAAAGCCAGATGCACC+AGG + chr4_1:7615878-7615897 None:intergenic 60.0%
!! CTGGTGCATCTGGCTTTCCG+AGG - chr4_1:7615876-7615895 Msa0532990:intron 60.0%
!! GGTGCATCTGGCTTTCCGAG+GGG - chr4_1:7615878-7615897 Msa0532990:intron 60.0%
AATCCACCTGCACCTGGGGG+AGG + chr4_1:7615728-7615747 None:intergenic 65.0%
CGGTCCACCATCACCACCGT+CGG + chr4_1:7615753-7615772 None:intergenic 65.0%
AAGGGGCAGATGCCTCCCCC+AGG - chr4_1:7615713-7615732 Msa0532990:intron 70.0%
CAGATGCCTCCCCCAGGTGC+AGG - chr4_1:7615719-7615738 Msa0532990:intron 70.0%
ATGCCTCCCCCAGGTGCAGG+TGG - chr4_1:7615722-7615741 Msa0532990:intron 70.0%
! TGGCTGGCCGGTACCACCAC+TGG + chr4_1:7617886-7617905 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 7614389 7618205 7614389 ID=Msa0532990;Name=Msa0532990
chr4_1 mRNA 7614389 7618205 7614389 ID=Msa0532990-mRNA-1;Parent=Msa0532990;Name=Msa0532990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=114|1|1|1|1|1|3|326|341
chr4_1 exon 7614389 7615156 7614389 ID=Msa0532990-mRNA-1:exon:2676;Parent=Msa0532990-mRNA-1
chr4_1 exon 7616520 7616938 7616520 ID=Msa0532990-mRNA-1:exon:2675;Parent=Msa0532990-mRNA-1
chr4_1 exon 7617927 7618205 7617927 ID=Msa0532990-mRNA-1:exon:2674;Parent=Msa0532990-mRNA-1
chr4_1 five_prime_UTR 7618092 7618205 7618092 ID=Msa0532990-mRNA-1:five_prime_utr;Parent=Msa0532990-mRNA-1
chr4_1 CDS 7617927 7618091 7617927 ID=Msa0532990-mRNA-1:cds;Parent=Msa0532990-mRNA-1
chr4_1 CDS 7616520 7616938 7616520 ID=Msa0532990-mRNA-1:cds;Parent=Msa0532990-mRNA-1
chr4_1 CDS 7614715 7615156 7614715 ID=Msa0532990-mRNA-1:cds;Parent=Msa0532990-mRNA-1
chr4_1 three_prime_UTR 7614389 7614714 7614389 ID=Msa0532990-mRNA-1:three_prime_utr;Parent=Msa0532990-mRNA-1
Gene Sequence

>Msa0532990

ATGGGTGTAGATTACTATAAAGTCCTTCAGATAGATCGAAATGCAAAAGATGATGATCTCAAGAAAGCTTATCGCAAACTTGCTATGAAATGGCATCCTGATAAGAACCCTAATAACAAGAAAGATGCTGAAGCCAAATTCAAGCAAATCTCTGAAGCTTATGATGTTTTGAGTGATCCACAAAAGAGAGCTGTGTATGATCAATATGGTGAGGAGGGGTTGAAGGGGCAGATGCCTCCCCCAGGTGCAGGTGGATTTTCCGACGGTGGTGATGGTGGACCGACAATGTTCCGGTTCAATCCGAGAAGTGCGGATGACATATTTTCCGAGTTCTTCGGGTTTCAAAGACCATTTGGCGGTGGAATGGGTGATATGGGTGGTCATCCTGGTGCATCTGGCTTTCCGAGGGGAATGTTTAGGGATGACCTTTTCTCTTCCTTTAGGAATTCGGCCGGTGAAGGATCTGCCAATGTGATGAGGAAAAGTGCACCGATAGAGAGAACATTGCCTTGCAGTTTGGAGGATTTGTATAAAGGGACCACCAAAAAAATGAAGATTTCCAGAGATGTTACTGATTCCAGCGGGAAGCCTACTACAGTTGAGGAAATTCTAACAATTGAGATCAAGCCAGGTTGGAAGAAAGGAACAAAGATAACTTTTCCGGAGAAGGGAAATGAACAGAGAGGCCTTATACCTGCAGACCTTGTTTTTATTATCGACGAGAAGCCTCATACTGTCTTCAAGAGGGACGGCAATGATCTTGTTGTTACACAGAAGATCTCTCTTGTAGAAGCTCTGACAGGTTACACTGCCCAAATAGCTACCCTCGATGGGAGGAATCTTACGGTCCCCGTCAACACCATCATTAGTCCATCATATGAAGAAGTAATTAAAGGAGAGGGTATGCCAATTCCTAAGGAACCTTCCAAAAAGGGAAACTTGAGAGTCAAGTTCAACGTCAAGTTTCCATCAAGACTTACATCAGAGCAGAAGACCGGCATCAAGCGATTATTGACATCTTCGTAA
Protein sequence

>Msa0532990

MGVDYYKVLQIDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQMPPPGAGGFSDGGDGGPTMFRFNPRSADDIFSEFFGFQRPFGGGMGDMGGHPGASGFPRGMFRDDLFSSFRNSAGEGSANVMRKSAPIERTLPCSLEDLYKGTTKKMKISRDVTDSSGKPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGLIPADLVFIIDEKPHTVFKRDGNDLVVTQKISLVEALTGYTAQIATLDGRNLTVPVNTIISPSYEEVIKGEGMPIPKEPSKKGNLRVKFNVKFPSRLTSEQKTGIKRLLTSS*