Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231630 | XP_003593093.1 | 97.665 | 514 | 11 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1026 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231630 | sp|Q28EW0|TM87A_XENTR | 32.484 | 314 | 200 | 6 | 197 | 505 | 197 | 503 | 7.65e-51 | 185 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231630 | A2Q492 | 97.665 | 514 | 11 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1026 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040790 | Msa0231630 | 0.811832 | 5.747474e-51 | -8.615850e-47 |
| Msa0124910 | Msa0231630 | 0.814129 | 1.802907e-51 | -8.615850e-47 |
| Msa0189270 | Msa0231630 | 0.832808 | 7.650503e-56 | -8.615850e-47 |
| Msa0231630 | Msa0307270 | 0.808989 | 2.361671e-50 | -8.615850e-47 |
| Msa0231630 | Msa0416020 | 0.814119 | 1.811804e-51 | -8.615850e-47 |
| Msa0231630 | Msa0508180 | 0.814656 | 1.378797e-51 | -8.615850e-47 |
| Msa0231630 | Msa0519760 | 0.827074 | 1.912244e-54 | -8.615850e-47 |
| Msa0231630 | Msa0519810 | 0.828192 | 1.030357e-54 | -8.615850e-47 |
| Msa0231630 | Msa0519840 | 0.824252 | 8.928623e-54 | -8.615850e-47 |
| Msa0231630 | Msa0579220 | 0.800431 | 1.445614e-48 | -8.615850e-47 |
| Msa0231630 | Msa0652770 | 0.824189 | 9.238033e-54 | -8.615850e-47 |
| Msa0231630 | Msa0693330 | 0.800982 | 1.116152e-48 | -8.615850e-47 |
| Msa0231630 | Msa0703950 | 0.811827 | 5.762482e-51 | -8.615850e-47 |
| Msa0231630 | Msa0810930 | 0.831074 | 2.051131e-55 | -8.615850e-47 |
| Msa0231630 | Msa0851850 | 0.807808 | 4.217188e-50 | -8.615850e-47 |
| Msa0231630 | Msa0902360 | 0.829742 | 4.342879e-55 | -8.615850e-47 |
| Msa0231630 | Msa0945190 | 0.823002 | 1.750730e-53 | -8.615850e-47 |
| Msa0231630 | Msa1076560 | 0.801279 | 9.704479e-49 | -8.615850e-47 |
| Msa0231630 | Msa1130890 | 0.815045 | 1.130379e-51 | -8.615850e-47 |
| Msa0231630 | Msa1130950 | 0.801812 | 7.546703e-49 | -8.615850e-47 |
| Msa0231630 | Msa1206230 | 0.821450 | 4.012795e-53 | -8.615850e-47 |
| Msa0231630 | Msa1259160 | 0.802613 | 5.163167e-49 | -8.615850e-47 |
| Msa0231630 | Msa1297970 | 0.821529 | 3.847007e-53 | -8.615850e-47 |
| Msa0231630 | Msa1412000 | 0.837237 | 5.853140e-57 | -8.615850e-47 |
| Msa0231630 | Msa1414390 | 0.830079 | 3.594280e-55 | -8.615850e-47 |
| Msa0231630 | Msa1427110 | 0.830490 | 2.852463e-55 | -8.615850e-47 |
| Msa0231630 | Msa1457890 | 0.831331 | 1.773574e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231630 | MtrunA17_Chr2g0278311 | 97.665 | 514 | 11 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1026 |
| Msa0231630 | MtrunA17_Chr8g0344451 | 54.970 | 493 | 213 | 5 | 24 | 514 | 20 | 505 | 0.0 | 558 |
| Msa0231630 | MtrunA17_Chr5g0428321 | 52.000 | 525 | 236 | 6 | 4 | 514 | 19 | 541 | 0.0 | 534 |
| Msa0231630 | MtrunA17_Chr8g0334581 | 42.063 | 504 | 239 | 9 | 24 | 514 | 28 | 491 | 1.31e-131 | 391 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231630 | AT2G01070.1 | 63.439 | 506 | 163 | 5 | 10 | 514 | 12 | 496 | 0.0 | 662 |
| Msa0231630 | AT2G01070.2 | 64.381 | 452 | 148 | 2 | 10 | 460 | 12 | 451 | 0.0 | 613 |
| Msa0231630 | AT1G72480.1 | 53.535 | 495 | 222 | 4 | 24 | 514 | 19 | 509 | 0.0 | 549 |
| Msa0231630 | AT1G61670.1 | 47.070 | 512 | 251 | 6 | 12 | 514 | 13 | 513 | 4.59e-157 | 457 |
| Msa0231630 | AT1G61670.2 | 47.070 | 512 | 251 | 6 | 12 | 514 | 13 | 513 | 4.59e-157 | 457 |
| Msa0231630 | AT1G10980.1 | 36.765 | 476 | 277 | 9 | 24 | 481 | 25 | 494 | 7.08e-101 | 313 |
Find 157 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAGTTCTATGTATTTA+TGG | 0.124995 | 2_2:+3904901 | Msa0231630:CDS |
| GATATAGGCGGTTCTGTTTA+TGG | 0.176908 | 2_2:+3904581 | Msa0231630:CDS |
| TCCTTCAGTATGTGAGGTTT+TGG | 0.183086 | 2_2:+3904957 | Msa0231630:CDS |
| AATACATAGAACTTCTTTAA+TGG | 0.194510 | 2_2:-3904896 | None:intergenic |
| AGTTCTTCCTGATGCTTTCT+TGG | 0.210058 | 2_2:+3905324 | Msa0231630:CDS |
| TACATGATATAAAACCATTT+TGG | 0.214692 | 2_2:-3907606 | None:intergenic |
| CTCTGCCAGCGCTCATTAAA+TGG | 0.223361 | 2_2:-3906894 | None:intergenic |
| CTCTCTGTTTCCATGGGTTA+TGG | 0.230696 | 2_2:+3905160 | Msa0231630:CDS |
| CTTGGATCATCACTGCATTC+TGG | 0.238611 | 2_2:+3906919 | Msa0231630:CDS |
| ATCTCAGCTGTTATTGGTCT+TGG | 0.253254 | 2_2:+3905007 | Msa0231630:CDS |
| CCTTCCAGATACATCATTAA+TGG | 0.253854 | 2_2:-3905287 | None:intergenic |
| ACGAGTCAGAAGAGGATAAA+AGG | 0.254497 | 2_2:+3907424 | Msa0231630:CDS |
| TCACATTCTTTGTTCCAAAA+TGG | 0.256294 | 2_2:+3907592 | Msa0231630:three_prime_UTR |
| AAAACGGAGTTCTGTTAAAT+TGG | 0.268399 | 2_2:+3905563 | Msa0231630:CDS |
| AATTATCACTTTAGATTCTA+AGG | 0.280120 | 2_2:+3904742 | Msa0231630:CDS |
| ATACATAGAACTTCTTTAAT+GGG | 0.287896 | 2_2:-3904895 | None:intergenic |
| CTTCTGCAACTGACACTAAT+TGG | 0.289421 | 2_2:+3904681 | Msa0231630:CDS |
| TAGAATCTAAAGTGATAATT+CGG | 0.290495 | 2_2:-3904739 | None:intergenic |
| TCTGTGTTATATGTTATCTC+TGG | 0.300146 | 2_2:+3906964 | Msa0231630:CDS |
| CACTGTATCTCAGCTGTTAT+TGG | 0.316682 | 2_2:+3905001 | Msa0231630:CDS |
| GTAAGCAAGGAGAGGTTATC+AGG | 0.319461 | 2_2:+3904654 | Msa0231630:CDS |
| CAATGCACCTTTGAGAACTT+TGG | 0.323697 | 2_2:-3906995 | None:intergenic |
| TGATATTGTTAATGCTGAAT+TGG | 0.330626 | 2_2:-3903641 | None:intergenic |
| TGATTCCAGTATTGTTGAAA+TGG | 0.337002 | 2_2:-3905066 | None:intergenic |
| ATGTTTGCCTTGGCATTGTT+TGG | 0.340723 | 2_2:+3904933 | Msa0231630:CDS |
| CTCTCTTCGGCAGATGAGAT+TGG | 0.343736 | 2_2:-3903550 | None:intergenic |
| TCTCATTCTCTCTGTTTCCA+TGG | 0.345919 | 2_2:+3905153 | Msa0231630:CDS |
| ATCACGATATCCTTGAGCTT+GGG | 0.360174 | 2_2:-3904818 | None:intergenic |
| ACCCATGTTGTGACAATAAT+AGG | 0.360700 | 2_2:-3905091 | None:intergenic |
| CACCTCTGATTTAGCTAAGA+TGG | 0.372513 | 2_2:+3904625 | Msa0231630:CDS |
| CAACATGGGTTGTCACTGTT+GGG | 0.376037 | 2_2:+3905104 | Msa0231630:CDS |
| CTCATTCTCTCTGTTTCCAT+GGG | 0.383587 | 2_2:+3905154 | Msa0231630:CDS |
| CGGTTACCTCTTCAGTTGTC+TGG | 0.386795 | 2_2:+3905622 | Msa0231630:CDS |
| AGAAGCCATGTCTCTAACTA+AGG | 0.392626 | 2_2:+3907317 | Msa0231630:CDS |
| TGATGAGCGGGAAGACAATC+TGG | 0.393173 | 2_2:+3904837 | Msa0231630:CDS |
| CGTCTTCCCCGACCCTCAAT+AGG | 0.393505 | 2_2:+3907518 | Msa0231630:three_prime_UTR |
| TATGCCCATTTCAACAATAC+TGG | 0.400524 | 2_2:+3905061 | Msa0231630:CDS |
| GGGACCATTAATGATGTATC+TGG | 0.401387 | 2_2:+3905283 | Msa0231630:CDS |
| GATTGTTTGAGATGATTCTC+TGG | 0.401399 | 2_2:+3905029 | Msa0231630:CDS |
| AATGCACCTTTGAGAACTTT+GGG | 0.404433 | 2_2:-3906994 | None:intergenic |
| TTGGATCATCACTGCATTCT+GGG | 0.410672 | 2_2:+3906920 | Msa0231630:CDS |
| CGTTGCAACTTCACTCTCTT+CGG | 0.410843 | 2_2:-3903563 | None:intergenic |
| CTTTAATGGGGCCATTCTAC+CGG | 0.417526 | 2_2:-3904882 | None:intergenic |
| CTGTTAAATTGGATATATAC+AGG | 0.420090 | 2_2:+3905574 | Msa0231630:CDS |
| AGAATCTAAAGTGATAATTC+GGG | 0.422647 | 2_2:-3904738 | None:intergenic |
| GGTTTGAAAATATAACCATT+AGG | 0.433202 | 2_2:+3904483 | Msa0231630:intron |
| AACACCTCCTATTGAGGGTC+GGG | 0.433247 | 2_2:-3907525 | None:intergenic |
| GCGCTGGCTTATGTTTGCCT+TGG | 0.439178 | 2_2:+3904923 | Msa0231630:CDS |
| CTTCTCTCCGGTGGCAGTGA+AGG | 0.450618 | 2_2:+3903805 | Msa0231630:CDS |
| GAAGTTTCTATCACAAAGAC+TGG | 0.455857 | 2_2:+3904764 | Msa0231630:CDS |
| ATAGAAATGAAAATAAATAT+AGG | 0.457478 | 2_2:-3903717 | None:intergenic |
| ATGAGCGCTGGCAGAGTGCT+TGG | 0.457803 | 2_2:+3906901 | Msa0231630:CDS |
| CATCAGAAGATGCATCAGTT+TGG | 0.459499 | 2_2:-3907392 | None:intergenic |
| GATTCCAGTATTGTTGAAAT+GGG | 0.459867 | 2_2:-3905065 | None:intergenic |
| GCTGCTGATCGTGATGATAT+AGG | 0.468825 | 2_2:+3904566 | Msa0231630:CDS |
| AAGGAGAAATAAGTTTAGTC+AGG | 0.470161 | 2_2:+3907355 | Msa0231630:CDS |
| CGAGTCAGAAGAGGATAAAA+GGG | 0.471974 | 2_2:+3907425 | Msa0231630:CDS |
| AGTTGTCTGGATAGGTTATG+AGG | 0.475557 | 2_2:+3905635 | Msa0231630:CDS |
| CATTATAGATCTATATTTCA+AGG | 0.482028 | 2_2:+3904709 | Msa0231630:CDS |
| ACCTCTTCAGTTGTCTGGAT+AGG | 0.482984 | 2_2:+3905627 | Msa0231630:CDS |
| GTAAGAACGGCCGTCGTGGA+TGG | 0.486797 | 2_2:-3903866 | None:intergenic |
| GGTGTTGTGCGACCCACTCT+TGG | 0.487087 | 2_2:+3905181 | Msa0231630:CDS |
| CGTCGTGGATGGAATCGGTA+TGG | 0.488362 | 2_2:-3903855 | None:intergenic |
| CTGTGTTATATGTTATCTCT+GGG | 0.488675 | 2_2:+3906965 | Msa0231630:CDS |
| TAAGGTATAAAGAGAGAGAA+GGG | 0.489179 | 2_2:+3903486 | None:intergenic |
| TTTACAACACCTCCTATTGA+GGG | 0.489243 | 2_2:-3907530 | None:intergenic |
| TGGCACGGTACCACGCGCCC+TGG | 0.493484 | 2_2:-3904522 | None:intergenic |
| AATGCGTCCAAGAAAGCATC+AGG | 0.493522 | 2_2:-3905331 | None:intergenic |
| CATCACGATATCCTTGAGCT+TGG | 0.496078 | 2_2:-3904819 | None:intergenic |
| GGTATGGGAAGCGGTGGAGA+TGG | 0.496727 | 2_2:-3903839 | None:intergenic |
| ATCTTCCTTGTCAGGCAAAA+CGG | 0.497564 | 2_2:+3905547 | Msa0231630:intron |
| ACAACATGGGTTGTCACTGT+TGG | 0.499602 | 2_2:+3905103 | Msa0231630:CDS |
| ACCTCTGATTTAGCTAAGAT+GGG | 0.503600 | 2_2:+3904626 | Msa0231630:CDS |
| ATAAATATAGGAGGAGGAGA+AGG | 0.506335 | 2_2:-3903705 | None:intergenic |
| GATGGAATCGGTATGGGAAG+CGG | 0.507575 | 2_2:-3903848 | None:intergenic |
| ACGACGGCCGTTCTTACATT+CGG | 0.509858 | 2_2:+3903872 | Msa0231630:CDS |
| AGTAAGTTACTCCAAGCAAA+AGG | 0.517304 | 2_2:-3905222 | None:intergenic |
| GCTAGATCCGCGCGTGTATG+TGG | 0.518173 | 2_2:+3903511 | Msa0231630:five_prime_UTR |
| CTTTCCCTTAGTTAGAGACA+TGG | 0.519744 | 2_2:-3907322 | None:intergenic |
| GGAGAAGAAAATCTGCAGCC+AGG | 0.520643 | 2_2:+3904504 | Msa0231630:CDS |
| ATGAAAATAAATATAGGAGG+AGG | 0.521390 | 2_2:-3903711 | None:intergenic |
| GTAAGGTATAAAGAGAGAGA+AGG | 0.522767 | 2_2:+3903485 | None:intergenic |
| AAATATAGATCTATAATGAC+TGG | 0.523698 | 2_2:-3904704 | None:intergenic |
| GTTCTATGTATTTATGGCGC+TGG | 0.529730 | 2_2:+3904907 | Msa0231630:CDS |
| CACTTAATTCAATAGTCAGT+GGG | 0.530389 | 2_2:-3907709 | None:intergenic |
| ACGGCCGTCGTGGATGGAAT+CGG | 0.533314 | 2_2:-3903860 | None:intergenic |
| GGCGATGCCTTCACTGCCAC+CGG | 0.538309 | 2_2:-3903812 | None:intergenic |
| TTTAATGGGGCCATTCTACC+GGG | 0.539654 | 2_2:-3904881 | None:intergenic |
| CACCTTTGAGAACTTTGGGA+AGG | 0.540818 | 2_2:-3906990 | None:intergenic |
| TTGAGACTTGAAAACCCAGC+AGG | 0.541326 | 2_2:-3907493 | None:intergenic |
| GTGGGATTTCCTAGTATGCA+AGG | 0.542253 | 2_2:-3907691 | None:intergenic |
| ATTATAGATCTATATTTCAA+GGG | 0.543479 | 2_2:+3904710 | Msa0231630:CDS |
| CAGATCCATTTAATGAGCGC+TGG | 0.543799 | 2_2:+3906889 | Msa0231630:CDS |
| GCATTGCCGACATCTTGAAA+AGG | 0.544373 | 2_2:-3903778 | None:intergenic |
| TCACGATATCCTTGAGCTTG+GGG | 0.544856 | 2_2:-3904817 | None:intergenic |
| CTCAAGGATATCGTGATGAG+CGG | 0.547215 | 2_2:+3904824 | Msa0231630:CDS |
| ATGGGAAGCGGTGGAGATGG+AGG | 0.547800 | 2_2:-3903836 | None:intergenic |
| AAGATGGGAGCTTGTAAGCA+AGG | 0.563186 | 2_2:+3904641 | Msa0231630:CDS |
| GTCGTGGATGGAATCGGTAT+GGG | 0.564130 | 2_2:-3903854 | None:intergenic |
| TTTGGCTCCTTCAGTATGTG+AGG | 0.564366 | 2_2:+3904951 | Msa0231630:CDS |
| GATGTAAGACCGCCAAGAGT+GGG | 0.569323 | 2_2:-3905193 | None:intergenic |
| TCAAGGATATCGTGATGAGC+GGG | 0.571538 | 2_2:+3904825 | Msa0231630:CDS |
| GAAGCCATGTCTCTAACTAA+GGG | 0.572177 | 2_2:+3907318 | Msa0231630:CDS |
| CTAACTAAGGGAAAGCAAGA+AGG | 0.572370 | 2_2:+3907330 | Msa0231630:CDS |
| CTCAAATGCACTAGTAGCAA+CGG | 0.572465 | 2_2:+3905602 | Msa0231630:CDS |
| GGAAGCGGTGGAGATGGAGG+CGG | 0.573916 | 2_2:-3903833 | None:intergenic |
| CGCCTTCCCAAAGTTCTCAA+AGG | 0.574890 | 2_2:+3906988 | Msa0231630:CDS |
| GACCTATTATTGTCACAACA+TGG | 0.575906 | 2_2:+3905089 | Msa0231630:CDS |
| CAACACCTCCTATTGAGGGT+CGG | 0.576156 | 2_2:-3907526 | None:intergenic |
| TGATGTAAGACCGCCAAGAG+TGG | 0.580462 | 2_2:-3905194 | None:intergenic |
| AATTATAATGTGCATTGGCA+CGG | 0.581245 | 2_2:-3904537 | None:intergenic |
| TACATAGAACTTCTTTAATG+GGG | 0.583432 | 2_2:-3904894 | None:intergenic |
| CTTCCCCGACCCTCAATAGG+AGG | 0.586533 | 2_2:+3907521 | Msa0231630:three_prime_UTR |
| GAGAAGAAAATCTGCAGCCA+GGG | 0.587661 | 2_2:+3904505 | Msa0231630:CDS |
| AAATCTGCAGCCAGGGCGCG+TGG | 0.589551 | 2_2:+3904512 | Msa0231630:CDS |
| ACCTATCCAGACAACTGAAG+AGG | 0.593355 | 2_2:-3905628 | None:intergenic |
| GAAATGAAAATAAATATAGG+AGG | 0.595974 | 2_2:-3903714 | None:intergenic |
| GAATGTAAGAACGGCCGTCG+TGG | 0.596570 | 2_2:-3903870 | None:intergenic |
| TCTTGGCGGTCTTACATCAA+AGG | 0.598039 | 2_2:+3905198 | Msa0231630:CDS |
| ACCTATTATTGTCACAACAT+GGG | 0.599977 | 2_2:+3905090 | Msa0231630:CDS |
| AGCTTGTGACCCCAAGCTCA+AGG | 0.601127 | 2_2:+3904808 | Msa0231630:CDS |
| CAATTAGTGTCAGTTGCAGA+AGG | 0.601312 | 2_2:-3904680 | None:intergenic |
| CCATTAATGATGTATCTGGA+AGG | 0.601632 | 2_2:+3905287 | Msa0231630:CDS |
| GTTGTGCGACCCACTCTTGG+CGG | 0.604378 | 2_2:+3905184 | Msa0231630:CDS |
| TCGCACAACACCATAACCCA+TGG | 0.605397 | 2_2:-3905170 | None:intergenic |
| GTACGCATACTCAGAGAAAG+TGG | 0.606384 | 2_2:+3907275 | Msa0231630:CDS |
| GATGTGGATGGATGCAAATG+AGG | 0.606399 | 2_2:-3903743 | None:intergenic |
| GGAATCGGTATGGGAAGCGG+TGG | 0.607092 | 2_2:-3903845 | None:intergenic |
| TGAAGAAGATGCGAACAACA+TGG | 0.608610 | 2_2:-3903680 | None:intergenic |
| AAGGGAAAGCAAGAAGGACA+AGG | 0.611902 | 2_2:+3907336 | Msa0231630:CDS |
| CTGAATATAACTGAATACGT+GGG | 0.613072 | 2_2:+3905262 | Msa0231630:CDS |
| CATTAATGATGTATCTGGAA+GGG | 0.613255 | 2_2:+3905288 | Msa0231630:CDS |
| TGAAGATGACGAGTCAGAAG+AGG | 0.617368 | 2_2:+3907416 | Msa0231630:CDS |
| CCCAAAACCTCACATACTGA+AGG | 0.620914 | 2_2:-3904958 | None:intergenic |
| TTATAGATCTATATTTCAAG+GGG | 0.621028 | 2_2:+3904711 | Msa0231630:CDS |
| AACATGGGTTGTCACTGTTG+GGG | 0.621382 | 2_2:+3905105 | Msa0231630:CDS |
| AAGGTTCGCGATTGTAGATG+TGG | 0.624736 | 2_2:-3903759 | None:intergenic |
| ACACTTAATTCAATAGTCAG+TGG | 0.627581 | 2_2:-3907710 | None:intergenic |
| ACACCTCCTATTGAGGGTCG+GGG | 0.627766 | 2_2:-3907524 | None:intergenic |
| TCCCATCTTAGCTAAATCAG+AGG | 0.631969 | 2_2:-3904627 | None:intergenic |
| TTCGCGATTGTAGATGTGGA+TGG | 0.634523 | 2_2:-3903755 | None:intergenic |
| GGGAGCTTGTAAGCAAGGAG+AGG | 0.639731 | 2_2:+3904646 | Msa0231630:CDS |
| GAAGGAGCCAAACAATGCCA+AGG | 0.641996 | 2_2:-3904940 | None:intergenic |
| TGGGATTTCCTAGTATGCAA+GGG | 0.654291 | 2_2:-3907690 | None:intergenic |
| AGCATTACCGAATGTAAGAA+CGG | 0.655590 | 2_2:-3903879 | None:intergenic |
| TGGAAACAGAGAGAATGAGA+AGG | 0.656636 | 2_2:-3905150 | None:intergenic |
| AACTACACCACATACACGCG+CGG | 0.660131 | 2_2:-3903518 | None:intergenic |
| TGAGACTTGAAAACCCAGCA+GGG | 0.660881 | 2_2:-3907492 | None:intergenic |
| GCTGAATATAACTGAATACG+TGG | 0.662152 | 2_2:+3905261 | Msa0231630:CDS |
| TACGCATACTCAGAGAAAGT+GGG | 0.662515 | 2_2:+3907276 | Msa0231630:CDS |
| AAGAAGATCACAATTCAACT+CGG | 0.664502 | 2_2:-3903592 | None:intergenic |
| CAGGGAAAACAGTACAGACG+TGG | 0.678840 | 2_2:-3907474 | None:intergenic |
| ATAGGCGGTTCTGTTTATGG+AGG | 0.681454 | 2_2:+3904584 | Msa0231630:CDS |
| ATGATGTATCTGGAAGGGCA+AGG | 0.685625 | 2_2:+3905293 | Msa0231630:CDS |
| TGAATATAACTGAATACGTG+GGG | 0.689783 | 2_2:+3905263 | Msa0231630:CDS |
| GCTGATCGTGATGATATAGG+CGG | 0.712191 | 2_2:+3904569 | Msa0231630:CDS |
| CATACCGATTCCATCCACGA+CGG | 0.807287 | 2_2:+3903856 | Msa0231630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGAAATGAAAATAAATAT+AGG | - | chr2_2:3903720-3903739 | None:intergenic | 10.0% |
| !! | TATATTGTTAATTATATGTT+AGG | + | chr2_2:3904273-3904292 | Msa0231630:intron | 10.0% |
| !! | ATATTGTTAATTATATGTTA+GGG | + | chr2_2:3904274-3904293 | Msa0231630:intron | 10.0% |
| !!! | CAAATTGATTTTGAAATATT+TGG | + | chr2_2:3904124-3904143 | Msa0231630:intron | 15.0% |
| !! | TATTGTTAATTATATGTTAG+GGG | + | chr2_2:3904275-3904294 | Msa0231630:intron | 15.0% |
| !! | ATTATAGATCTATATTTCAA+GGG | + | chr2_2:3904710-3904729 | Msa0231630:CDS | 15.0% |
| !!! | TTGGACTTTTTTTTTTTTTT+GGG | - | chr2_2:3905804-3905823 | None:intergenic | 15.0% |
| !!! | ATTGGACTTTTTTTTTTTTT+TGG | - | chr2_2:3905805-3905824 | None:intergenic | 15.0% |
| !!! | TAGTATTTATTATTTTTTCC+TGG | + | chr2_2:3906230-3906249 | Msa0231630:intron | 15.0% |
| !!! | AGTATTTATTATTTTTTCCT+GGG | + | chr2_2:3906231-3906250 | Msa0231630:intron | 15.0% |
| !! | GTAAAATAAAATTGATCAAA+TGG | + | chr2_2:3906613-3906632 | Msa0231630:intron | 15.0% |
| !! | GAAATGAAAATAAATATAGG+AGG | - | chr2_2:3903717-3903736 | None:intergenic | 20.0% |
| !! | TTAGGAATTGTATAATTTGA+TGG | + | chr2_2:3904040-3904059 | Msa0231630:intron | 20.0% |
| !! | GAAATGTAAAAAATTGCATA+TGG | + | chr2_2:3904223-3904242 | Msa0231630:intron | 20.0% |
| !! | TCAAAAATTATAATGTGCAT+TGG | - | chr2_2:3904545-3904564 | None:intergenic | 20.0% |
| !!! | AATGCACATTATAATTTTTG+AGG | + | chr2_2:3904544-3904563 | Msa0231630:CDS | 20.0% |
| !! | AAATATAGATCTATAATGAC+TGG | - | chr2_2:3904707-3904726 | None:intergenic | 20.0% |
| !! | CATTATAGATCTATATTTCA+AGG | + | chr2_2:3904709-3904728 | Msa0231630:CDS | 20.0% |
| !! | TTATAGATCTATATTTCAAG+GGG | + | chr2_2:3904711-3904730 | Msa0231630:CDS | 20.0% |
| !!! | TAGAATCTAAAGTGATAATT+CGG | - | chr2_2:3904742-3904761 | None:intergenic | 20.0% |
| !! | AATTATCACTTTAGATTCTA+AGG | + | chr2_2:3904742-3904761 | Msa0231630:CDS | 20.0% |
| !! | ATACATAGAACTTCTTTAAT+GGG | - | chr2_2:3904898-3904917 | None:intergenic | 20.0% |
| !! | AATACATAGAACTTCTTTAA+TGG | - | chr2_2:3904899-3904918 | None:intergenic | 20.0% |
| !! | AAAGAAGTTCTATGTATTTA+TGG | + | chr2_2:3904901-3904920 | Msa0231630:CDS | 20.0% |
| !!! | TTATTTTGTGCAATATAACA+TGG | + | chr2_2:3905679-3905698 | Msa0231630:intron | 20.0% |
| !! | AAGAGAAAGTAAATTAAAGT+CGG | - | chr2_2:3905829-3905848 | None:intergenic | 20.0% |
| !!! | AGAAATATTAACTTGTTGAA+TGG | + | chr2_2:3906200-3906219 | Msa0231630:intron | 20.0% |
| !!! | GATTTTCTTATTATTTTCTC+AGG | - | chr2_2:3906324-3906343 | None:intergenic | 20.0% |
| !!! | TGTTTTCTTGATATTTGATA+CGG | - | chr2_2:3906445-3906464 | None:intergenic | 20.0% |
| !! | ACAAATTATTAATAGAGAAG+AGG | + | chr2_2:3906462-3906481 | Msa0231630:intron | 20.0% |
| !! | CAAATTATTAATAGAGAAGA+GGG | + | chr2_2:3906463-3906482 | Msa0231630:intron | 20.0% |
| !!! | ATTTAGTTTCCAATTTTTTG+AGG | - | chr2_2:3906514-3906533 | None:intergenic | 20.0% |
| !!! | TTTTTTGCCCTTTTTTTTTA+CGG | - | chr2_2:3907155-3907174 | None:intergenic | 20.0% |
| !!! | AAAATTTTGTTCATTTGTAC+TGG | + | chr2_2:3907550-3907569 | Msa0231630:three_prime_UTR | 20.0% |
| !!! | TACATGATATAAAACCATTT+TGG | - | chr2_2:3907609-3907628 | None:intergenic | 20.0% |
| ! | TGATATTGTTAATGCTGAAT+TGG | - | chr2_2:3903644-3903663 | None:intergenic | 25.0% |
| ! | ATGAAAATAAATATAGGAGG+AGG | - | chr2_2:3903714-3903733 | None:intergenic | 25.0% |
| ! | TTTATGACACTGAATAATAC+TGG | - | chr2_2:3903971-3903990 | None:intergenic | 25.0% |
| ! | ACAGAAATGTTGATATGAAT+TGG | - | chr2_2:3904019-3904038 | None:intergenic | 25.0% |
| ! | CAAGTTAGAATCAATTCTAA+AGG | - | chr2_2:3904175-3904194 | None:intergenic | 25.0% |
| !!! | ATGGAGTTACATTTTTTTAG+TGG | + | chr2_2:3904242-3904261 | Msa0231630:intron | 25.0% |
| !!! | AACATTTAAGGTTGGTTTTA+TGG | - | chr2_2:3904357-3904376 | None:intergenic | 25.0% |
| ! | TCATCGTATATGGATTTATA+TGG | + | chr2_2:3904382-3904401 | Msa0231630:intron | 25.0% |
| ! | TGACATATCATTCAAATATG+AGG | - | chr2_2:3904421-3904440 | None:intergenic | 25.0% |
| ! | GGTTTGAAAATATAACCATT+AGG | + | chr2_2:3904483-3904502 | Msa0231630:intron | 25.0% |
| !! | AGAATCTAAAGTGATAATTC+GGG | - | chr2_2:3904741-3904760 | None:intergenic | 25.0% |
| ! | TACATAGAACTTCTTTAATG+GGG | - | chr2_2:3904897-3904916 | None:intergenic | 25.0% |
| ! | AACAGAAAAATTTAGAGGTA+GGG | - | chr2_2:3905475-3905494 | None:intergenic | 25.0% |
| ! | TAACAGAAAAATTTAGAGGT+AGG | - | chr2_2:3905476-3905495 | None:intergenic | 25.0% |
| !! | ACCTCTAAATTTTTCTGTTA+TGG | + | chr2_2:3905476-3905495 | Msa0231630:intron | 25.0% |
| ! | TCCATAACAGAAAAATTTAG+AGG | - | chr2_2:3905480-3905499 | None:intergenic | 25.0% |
| ! | CAAACATATTTGAAAAAAGG+AGG | - | chr2_2:3905514-3905533 | None:intergenic | 25.0% |
| !!! | CTCCTTTTTTCAAATATGTT+TGG | + | chr2_2:3905512-3905531 | Msa0231630:intron | 25.0% |
| ! | TGCCAAACATATTTGAAAAA+AGG | - | chr2_2:3905517-3905536 | None:intergenic | 25.0% |
| ! | CTGTTAAATTGGATATATAC+AGG | + | chr2_2:3905574-3905593 | Msa0231630:CDS | 25.0% |
| ! | ATTTCAGTTACTAATACAAG+AGG | - | chr2_2:3905706-3905725 | None:intergenic | 25.0% |
| ! | AGAGAAAGTAAATTAAAGTC+GGG | - | chr2_2:3905828-3905847 | None:intergenic | 25.0% |
| ! | AATAGGAAATATAAAGGAAC+AGG | - | chr2_2:3905904-3905923 | None:intergenic | 25.0% |
| ! | GTGAGAAATAGGAAATATAA+AGG | - | chr2_2:3905910-3905929 | None:intergenic | 25.0% |
| ! | ATAGAGTAATGTGATTTATC+TGG | + | chr2_2:3905941-3905960 | Msa0231630:intron | 25.0% |
| ! | AATGAGTGAAAATAACTTAC+AGG | + | chr2_2:3905974-3905993 | Msa0231630:intron | 25.0% |
| ! | TGTGAGAAAAAAAAACTAAG+AGG | + | chr2_2:3906271-3906290 | Msa0231630:intron | 25.0% |
| !!! | ATAACAAGCCTTATTCTAAT+AGG | - | chr2_2:3906414-3906433 | None:intergenic | 25.0% |
| ! | TAAACCTGTAAAAGTAAAGT+TGG | - | chr2_2:3906858-3906877 | None:intergenic | 25.0% |
| ! | TTGAAATTTACAATGTTGTG+TGG | + | chr2_2:3907097-3907116 | Msa0231630:intron | 25.0% |
| ! | TGAAATTTACAATGTTGTGT+GGG | + | chr2_2:3907098-3907117 | Msa0231630:intron | 25.0% |
| ! | TAGTAAAGCCGTAAAAAAAA+AGG | + | chr2_2:3907144-3907163 | Msa0231630:intron | 25.0% |
| ! | AGTAAAGCCGTAAAAAAAAA+GGG | + | chr2_2:3907145-3907164 | Msa0231630:intron | 25.0% |
| AAGAAGATCACAATTCAACT+CGG | - | chr2_2:3903595-3903614 | None:intergenic | 30.0% | |
| ! | TCTCTTTTGAGCATTCTTTT+CGG | + | chr2_2:3903614-3903633 | Msa0231630:five_prime_UTR | 30.0% |
| ! | TTGACAAATCCATCTAAAGT+GGG | - | chr2_2:3903935-3903954 | None:intergenic | 30.0% |
| ATTGACAAATCCATCTAAAG+TGG | - | chr2_2:3903936-3903955 | None:intergenic | 30.0% | |
| CATATCAACATTTCTGTCTT+AGG | + | chr2_2:3904022-3904041 | Msa0231630:intron | 30.0% | |
| ! | AGATAAATAGTGGAGTGATA+AGG | - | chr2_2:3904322-3904341 | None:intergenic | 30.0% |
| !!! | TTAAGGTTGGTTTTATGGTT+GGG | - | chr2_2:3904352-3904371 | None:intergenic | 30.0% |
| !!! | TTTAAGGTTGGTTTTATGGT+TGG | - | chr2_2:3904353-3904372 | None:intergenic | 30.0% |
| ! | TGAGATGTAACATTTAAGGT+TGG | - | chr2_2:3904365-3904384 | None:intergenic | 30.0% |
| ACGATGAGATGTAACATTTA+AGG | - | chr2_2:3904369-3904388 | None:intergenic | 30.0% | |
| ATGTTACATCTCATCGTATA+TGG | + | chr2_2:3904372-3904391 | Msa0231630:intron | 30.0% | |
| ! | AATTATAATGTGCATTGGCA+CGG | - | chr2_2:3904540-3904559 | None:intergenic | 30.0% |
| GATTCCAGTATTGTTGAAAT+GGG | - | chr2_2:3905068-3905087 | None:intergenic | 30.0% | |
| TGATTCCAGTATTGTTGAAA+TGG | - | chr2_2:3905069-3905088 | None:intergenic | 30.0% | |
| ACCTATTATTGTCACAACAT+GGG | + | chr2_2:3905090-3905109 | Msa0231630:CDS | 30.0% | |
| CTGAATATAACTGAATACGT+GGG | + | chr2_2:3905262-3905281 | Msa0231630:CDS | 30.0% | |
| TGAATATAACTGAATACGTG+GGG | + | chr2_2:3905263-3905282 | Msa0231630:CDS | 30.0% | |
| CATTAATGATGTATCTGGAA+GGG | + | chr2_2:3905288-3905307 | Msa0231630:CDS | 30.0% | |
| !!! | TGGACGCATTTTTGATTTTA+TGG | + | chr2_2:3905344-3905363 | Msa0231630:CDS | 30.0% |
| AAAAACACTAGAACAGTTAC+AGG | + | chr2_2:3905384-3905403 | Msa0231630:CDS | 30.0% | |
| TTGAGCAAAGATAATAGGTA+CGG | - | chr2_2:3905432-3905451 | None:intergenic | 30.0% | |
| AAAACGGAGTTCTGTTAAAT+TGG | + | chr2_2:3905563-3905582 | Msa0231630:CDS | 30.0% | |
| AAGTAAATTAAAGTCGGGAT+TGG | - | chr2_2:3905823-3905842 | None:intergenic | 30.0% | |
| ! | TATTTCCTATTTCTCACAAG+TGG | + | chr2_2:3905913-3905932 | Msa0231630:intron | 30.0% |
| ! | TTTTACCACTTGTGAGAAAT+AGG | - | chr2_2:3905921-3905940 | None:intergenic | 30.0% |
| AGTGAAAATAACTTACAGGA+AGG | + | chr2_2:3905978-3905997 | Msa0231630:intron | 30.0% | |
| ACATTCAGTTGTCAATGTAT+GGG | + | chr2_2:3906020-3906039 | Msa0231630:intron | 30.0% | |
| ACCTTCTACCTATTAGAATA+AGG | + | chr2_2:3906403-3906422 | Msa0231630:intron | 30.0% | |
| TCAAGGAAACCTCAAAAAAT+TGG | + | chr2_2:3906502-3906521 | Msa0231630:intron | 30.0% | |
| ! | GCATTTTTCTCTTGTTCATT+TGG | - | chr2_2:3906558-3906577 | None:intergenic | 30.0% |
| AGAGAAAAATGCATGATCAA+AGG | + | chr2_2:3906566-3906585 | Msa0231630:intron | 30.0% | |
| TGAATCAAGTGATGACTAAA+TGG | + | chr2_2:3906640-3906659 | Msa0231630:intron | 30.0% | |
| GAATCAAGTGATGACTAAAT+GGG | + | chr2_2:3906641-3906660 | Msa0231630:intron | 30.0% | |
| ! | AAATGGGATTCTTCATTTTG+TGG | + | chr2_2:3906657-3906676 | Msa0231630:intron | 30.0% |
| GTAAAGTTGGCATATATTGA+TGG | - | chr2_2:3906845-3906864 | None:intergenic | 30.0% | |
| !! | TATGCCAACTTTACTTTTAC+AGG | + | chr2_2:3906851-3906870 | Msa0231630:intron | 30.0% |
| TCTGTGTTATATGTTATCTC+TGG | + | chr2_2:3906964-3906983 | Msa0231630:CDS | 30.0% | |
| CTGTGTTATATGTTATCTCT+GGG | + | chr2_2:3906965-3906984 | Msa0231630:CDS | 30.0% | |
| AAGGAGAAATAAGTTTAGTC+AGG | + | chr2_2:3907355-3907374 | Msa0231630:CDS | 30.0% | |
| TCACATTCTTTGTTCCAAAA+TGG | + | chr2_2:3907592-3907611 | Msa0231630:three_prime_UTR | 30.0% | |
| CACTTAATTCAATAGTCAGT+GGG | - | chr2_2:3907712-3907731 | None:intergenic | 30.0% | |
| ACACTTAATTCAATAGTCAG+TGG | - | chr2_2:3907713-3907732 | None:intergenic | 30.0% | |
| ATAAATATAGGAGGAGGAGA+AGG | - | chr2_2:3903708-3903727 | None:intergenic | 35.0% | |
| AGCATTACCGAATGTAAGAA+CGG | - | chr2_2:3903882-3903901 | None:intergenic | 35.0% | |
| TTACTTATGCCCACTTTAGA+TGG | + | chr2_2:3903923-3903942 | Msa0231630:intron | 35.0% | |
| TAGATGCTAGACTGAAATGA+AGG | + | chr2_2:3904065-3904084 | Msa0231630:intron | 35.0% | |
| AGATGCTAGACTGAAATGAA+GGG | + | chr2_2:3904066-3904085 | Msa0231630:intron | 35.0% | |
| ! | GAGCCAAAATTGATTCTAGA+GGG | + | chr2_2:3904095-3904114 | Msa0231630:intron | 35.0% |
| ! | AAATAGTGGAGTGATAAGGA+GGG | - | chr2_2:3904318-3904337 | None:intergenic | 35.0% |
| ! | TAAATAGTGGAGTGATAAGG+AGG | - | chr2_2:3904319-3904338 | None:intergenic | 35.0% |
| ! | TGCAGATTTTCTTCTCCTAA+TGG | - | chr2_2:3904501-3904520 | None:intergenic | 35.0% |
| ACCTCTGATTTAGCTAAGAT+GGG | + | chr2_2:3904626-3904645 | Msa0231630:CDS | 35.0% | |
| GAAGTTTCTATCACAAAGAC+TGG | + | chr2_2:3904764-3904783 | Msa0231630:CDS | 35.0% | |
| ! | GATTGTTTGAGATGATTCTC+TGG | + | chr2_2:3905029-3905048 | Msa0231630:CDS | 35.0% |
| TATGCCCATTTCAACAATAC+TGG | + | chr2_2:3905061-3905080 | Msa0231630:CDS | 35.0% | |
| GACCTATTATTGTCACAACA+TGG | + | chr2_2:3905089-3905108 | Msa0231630:CDS | 35.0% | |
| ACCCATGTTGTGACAATAAT+AGG | - | chr2_2:3905094-3905113 | None:intergenic | 35.0% | |
| AGTAAGTTACTCCAAGCAAA+AGG | - | chr2_2:3905225-3905244 | None:intergenic | 35.0% | |
| GCTGAATATAACTGAATACG+TGG | + | chr2_2:3905261-3905280 | Msa0231630:CDS | 35.0% | |
| CCTTCCAGATACATCATTAA+TGG | - | chr2_2:3905290-3905309 | None:intergenic | 35.0% | |
| CCATTAATGATGTATCTGGA+AGG | + | chr2_2:3905287-3905306 | Msa0231630:CDS | 35.0% | |
| TGAGCAAAGATAATAGGTAC+GGG | - | chr2_2:3905431-3905450 | None:intergenic | 35.0% | |
| GGAACTTGAGCAAAGATAAT+AGG | - | chr2_2:3905437-3905456 | None:intergenic | 35.0% | |
| GTAATATAACACAGCGAAAC+AGG | - | chr2_2:3905760-3905779 | None:intergenic | 35.0% | |
| TCCATATCACCTTTGCATTT+AGG | + | chr2_2:3905871-3905890 | Msa0231630:intron | 35.0% | |
| ACCTAAATGCAAAGGTGATA+TGG | - | chr2_2:3905875-3905894 | None:intergenic | 35.0% | |
| ! | GAATGTGTTGCATGGTATTT+TGG | - | chr2_2:3906006-3906025 | None:intergenic | 35.0% |
| CACATTCAGTTGTCAATGTA+TGG | + | chr2_2:3906019-3906038 | Msa0231630:intron | 35.0% | |
| ! | ACAACGTAGATAAGCTCTAA+AGG | - | chr2_2:3906131-3906150 | None:intergenic | 35.0% |
| AGTGTAGAAATGCTAGCATT+TGG | + | chr2_2:3906161-3906180 | Msa0231630:intron | 35.0% | |
| TTTCCTGGGTAAATATCAAG+TGG | + | chr2_2:3906245-3906264 | Msa0231630:intron | 35.0% | |
| TATCCACTTGATATTTACCC+AGG | - | chr2_2:3906251-3906270 | None:intergenic | 35.0% | |
| AAGAGGCTTCTGATTAGAAA+AGG | + | chr2_2:3906288-3906307 | Msa0231630:intron | 35.0% | |
| AGAGGCTTCTGATTAGAAAA+GGG | + | chr2_2:3906289-3906308 | Msa0231630:intron | 35.0% | |
| ! | GCCTTATTCTAATAGGTAGA+AGG | - | chr2_2:3906407-3906426 | None:intergenic | 35.0% |
| GTCAAACACAAACAAAAGCA+GGG | - | chr2_2:3906718-3906737 | None:intergenic | 35.0% | |
| AGTCAAACACAAACAAAAGC+AGG | - | chr2_2:3906719-3906738 | None:intergenic | 35.0% | |
| ! | AATGCACCTTTGAGAACTTT+GGG | - | chr2_2:3906997-3907016 | None:intergenic | 35.0% |
| ATTCTAACGTCTGATTCAGA+TGG | + | chr2_2:3907199-3907218 | Msa0231630:intron | 35.0% | |
| CAAAAGAAGTGAGACTCTAT+CGG | - | chr2_2:3907228-3907247 | None:intergenic | 35.0% | |
| TTAGTCAGGCAAGAGAAAAA+TGG | + | chr2_2:3907369-3907388 | Msa0231630:CDS | 35.0% | |
| TTTACAACACCTCCTATTGA+GGG | - | chr2_2:3907533-3907552 | None:intergenic | 35.0% | |
| ! | TTTTACAACACCTCCTATTG+AGG | - | chr2_2:3907534-3907553 | None:intergenic | 35.0% |
| TGAAGAAGATGCGAACAACA+TGG | - | chr2_2:3903683-3903702 | None:intergenic | 40.0% | |
| GATGCTAGACTGAAATGAAG+GGG | + | chr2_2:3904067-3904086 | Msa0231630:intron | 40.0% | |
| ! | GGAGCCAAAATTGATTCTAG+AGG | + | chr2_2:3904094-3904113 | Msa0231630:intron | 40.0% |
| !!! | CCTCCCTCTAGAATCAATTT+TGG | - | chr2_2:3904101-3904120 | None:intergenic | 40.0% |
| ! | CCAAAATTGATTCTAGAGGG+AGG | + | chr2_2:3904098-3904117 | Msa0231630:intron | 40.0% |
| GCACTCGAGTAGAATTGATT+TGG | + | chr2_2:3904149-3904168 | Msa0231630:intron | 40.0% | |
| !!! | ACACTGACTTTTTCTGCTTG+TGG | + | chr2_2:3904454-3904473 | Msa0231630:intron | 40.0% |
| !!! | CACTGACTTTTTCTGCTTGT+GGG | + | chr2_2:3904455-3904474 | Msa0231630:intron | 40.0% |
| ! | TTTTTCTGCTTGTGGGTGAT+AGG | + | chr2_2:3904462-3904481 | Msa0231630:intron | 40.0% |
| GATATAGGCGGTTCTGTTTA+TGG | + | chr2_2:3904581-3904600 | Msa0231630:CDS | 40.0% | |
| CACCTCTGATTTAGCTAAGA+TGG | + | chr2_2:3904625-3904644 | Msa0231630:CDS | 40.0% | |
| TCCCATCTTAGCTAAATCAG+AGG | - | chr2_2:3904630-3904649 | None:intergenic | 40.0% | |
| CAATTAGTGTCAGTTGCAGA+AGG | - | chr2_2:3904683-3904702 | None:intergenic | 40.0% | |
| CTTCTGCAACTGACACTAAT+TGG | + | chr2_2:3904681-3904700 | Msa0231630:CDS | 40.0% | |
| ATCACGATATCCTTGAGCTT+GGG | - | chr2_2:3904821-3904840 | None:intergenic | 40.0% | |
| ACAATCTGGAAAAACCCTGA+TGG | + | chr2_2:3904851-3904870 | Msa0231630:CDS | 40.0% | |
| CAATCTGGAAAAACCCTGAT+GGG | + | chr2_2:3904852-3904871 | Msa0231630:CDS | 40.0% | |
| GTTCTATGTATTTATGGCGC+TGG | + | chr2_2:3904907-3904926 | Msa0231630:CDS | 40.0% | |
| ATGTTTGCCTTGGCATTGTT+TGG | + | chr2_2:3904933-3904952 | Msa0231630:CDS | 40.0% | |
| ! | TCCTTCAGTATGTGAGGTTT+TGG | + | chr2_2:3904957-3904976 | Msa0231630:CDS | 40.0% |
| ! | CCTTCAGTATGTGAGGTTTT+GGG | + | chr2_2:3904958-3904977 | Msa0231630:CDS | 40.0% |
| CACTGTATCTCAGCTGTTAT+TGG | + | chr2_2:3905001-3905020 | Msa0231630:CDS | 40.0% | |
| ! | ATCTCAGCTGTTATTGGTCT+TGG | + | chr2_2:3905007-3905026 | Msa0231630:CDS | 40.0% |
| TGGAAACAGAGAGAATGAGA+AGG | - | chr2_2:3905153-3905172 | None:intergenic | 40.0% | |
| TCTCATTCTCTCTGTTTCCA+TGG | + | chr2_2:3905153-3905172 | Msa0231630:CDS | 40.0% | |
| CTCATTCTCTCTGTTTCCAT+GGG | + | chr2_2:3905154-3905173 | Msa0231630:CDS | 40.0% | |
| ! | ACATCAAAGGTCCTTTTGCT+TGG | + | chr2_2:3905211-3905230 | Msa0231630:CDS | 40.0% |
| GGGACCATTAATGATGTATC+TGG | + | chr2_2:3905283-3905302 | Msa0231630:CDS | 40.0% | |
| AGTTCTTCCTGATGCTTTCT+TGG | + | chr2_2:3905324-3905343 | Msa0231630:CDS | 40.0% | |
| !! | GTAGGGTGCTGTAAAATAGT+AGG | - | chr2_2:3905458-3905477 | None:intergenic | 40.0% |
| ATCTTCCTTGTCAGGCAAAA+CGG | + | chr2_2:3905547-3905566 | Msa0231630:intron | 40.0% | |
| CTCAAATGCACTAGTAGCAA+CGG | + | chr2_2:3905602-3905621 | Msa0231630:CDS | 40.0% | |
| AGTTGTCTGGATAGGTTATG+AGG | + | chr2_2:3905635-3905654 | Msa0231630:CDS | 40.0% | |
| TCACCTTTGCATTTAGGTAC+CGG | + | chr2_2:3905877-3905896 | Msa0231630:intron | 40.0% | |
| GAAATATAAAGGAACAGGCC+CGG | - | chr2_2:3905899-3905918 | None:intergenic | 40.0% | |
| TGACAACTGAATGTGTTGCA+TGG | - | chr2_2:3906014-3906033 | None:intergenic | 40.0% | |
| !! | GTAGATAAGCTCTAAAGGAG+TGG | - | chr2_2:3906126-3906145 | None:intergenic | 40.0% |
| CTTCTGATTAGAAAAGGGAG+AGG | + | chr2_2:3906294-3906313 | Msa0231630:intron | 40.0% | |
| GAGCTCAAAGAACATTGTCA+AGG | + | chr2_2:3906485-3906504 | Msa0231630:intron | 40.0% | |
| CTCTTGTTCATTTGGCTGAT+AGG | - | chr2_2:3906550-3906569 | None:intergenic | 40.0% | |
| CGTTTGAAAGAAACATCCAG+AGG | + | chr2_2:3906683-3906702 | Msa0231630:intron | 40.0% | |
| TTGGATCATCACTGCATTCT+GGG | + | chr2_2:3906920-3906939 | Msa0231630:CDS | 40.0% | |
| ! | CAATGCACCTTTGAGAACTT+TGG | - | chr2_2:3906998-3907017 | None:intergenic | 40.0% |
| TTTACAATGTTGTGTGGGTG+AGG | + | chr2_2:3907103-3907122 | Msa0231630:intron | 40.0% | |
| TACGCATACTCAGAGAAAGT+GGG | + | chr2_2:3907276-3907295 | Msa0231630:CDS | 40.0% | |
| AGAAGCCATGTCTCTAACTA+AGG | + | chr2_2:3907317-3907336 | Msa0231630:CDS | 40.0% | |
| GAAGCCATGTCTCTAACTAA+GGG | + | chr2_2:3907318-3907337 | Msa0231630:CDS | 40.0% | |
| CTTTCCCTTAGTTAGAGACA+TGG | - | chr2_2:3907325-3907344 | None:intergenic | 40.0% | |
| CTAACTAAGGGAAAGCAAGA+AGG | + | chr2_2:3907330-3907349 | Msa0231630:CDS | 40.0% | |
| CATCAGAAGATGCATCAGTT+TGG | - | chr2_2:3907395-3907414 | None:intergenic | 40.0% | |
| ACGAGTCAGAAGAGGATAAA+AGG | + | chr2_2:3907424-3907443 | Msa0231630:CDS | 40.0% | |
| CGAGTCAGAAGAGGATAAAA+GGG | + | chr2_2:3907425-3907444 | Msa0231630:CDS | 40.0% | |
| ! | TCTTTTAGCCCTTGCATACT+AGG | + | chr2_2:3907682-3907701 | Msa0231630:three_prime_UTR | 40.0% |
| TGGGATTTCCTAGTATGCAA+GGG | - | chr2_2:3907693-3907712 | None:intergenic | 40.0% | |
| CGTTGCAACTTCACTCTCTT+CGG | - | chr2_2:3903566-3903585 | None:intergenic | 45.0% | |
| GATGTGGATGGATGCAAATG+AGG | - | chr2_2:3903746-3903765 | None:intergenic | 45.0% | |
| TTCGCGATTGTAGATGTGGA+TGG | - | chr2_2:3903758-3903777 | None:intergenic | 45.0% | |
| AAGGTTCGCGATTGTAGATG+TGG | - | chr2_2:3903762-3903781 | None:intergenic | 45.0% | |
| !! | CGCGAACCTTTTCAAGATGT+CGG | + | chr2_2:3903772-3903791 | Msa0231630:CDS | 45.0% |
| GCATTGCCGACATCTTGAAA+AGG | - | chr2_2:3903781-3903800 | None:intergenic | 45.0% | |
| ! | GGCAATGCTTTTCTTCTCTC+CGG | + | chr2_2:3903793-3903812 | Msa0231630:CDS | 45.0% |
| ! | AATGCTTTTCTTCTCTCCGG+TGG | + | chr2_2:3903796-3903815 | Msa0231630:CDS | 45.0% |
| GGGATGGAGGAGATAAATAG+TGG | - | chr2_2:3904332-3904351 | None:intergenic | 45.0% | |
| !!! | TGGTTTTATGGTTGGGATGG+AGG | - | chr2_2:3904345-3904364 | None:intergenic | 45.0% |
| !!! | GGTTGGTTTTATGGTTGGGA+TGG | - | chr2_2:3904348-3904367 | None:intergenic | 45.0% |
| GAGAAGAAAATCTGCAGCCA+GGG | + | chr2_2:3904505-3904524 | Msa0231630:CDS | 45.0% | |
| GCTGCTGATCGTGATGATAT+AGG | + | chr2_2:3904566-3904585 | Msa0231630:CDS | 45.0% | |
| GCTGATCGTGATGATATAGG+CGG | + | chr2_2:3904569-3904588 | Msa0231630:CDS | 45.0% | |
| ATAGGCGGTTCTGTTTATGG+AGG | + | chr2_2:3904584-3904603 | Msa0231630:CDS | 45.0% | |
| AAGATGGGAGCTTGTAAGCA+AGG | + | chr2_2:3904641-3904660 | Msa0231630:CDS | 45.0% | |
| GTAAGCAAGGAGAGGTTATC+AGG | + | chr2_2:3904654-3904673 | Msa0231630:CDS | 45.0% | |
| TCACGATATCCTTGAGCTTG+GGG | - | chr2_2:3904820-3904839 | None:intergenic | 45.0% | |
| CATCACGATATCCTTGAGCT+TGG | - | chr2_2:3904822-3904841 | None:intergenic | 45.0% | |
| CTCAAGGATATCGTGATGAG+CGG | + | chr2_2:3904824-3904843 | Msa0231630:CDS | 45.0% | |
| TCAAGGATATCGTGATGAGC+GGG | + | chr2_2:3904825-3904844 | Msa0231630:CDS | 45.0% | |
| !!! | AACCCTGATGGGTTTTTACC+CGG | + | chr2_2:3904863-3904882 | Msa0231630:CDS | 45.0% |
| TACCGGGTAAAAACCCATCA+GGG | - | chr2_2:3904868-3904887 | None:intergenic | 45.0% | |
| ! | TGGGTTTTTACCCGGTAGAA+TGG | + | chr2_2:3904871-3904890 | Msa0231630:CDS | 45.0% |
| TTTAATGGGGCCATTCTACC+GGG | - | chr2_2:3904884-3904903 | None:intergenic | 45.0% | |
| CTTTAATGGGGCCATTCTAC+CGG | - | chr2_2:3904885-3904904 | None:intergenic | 45.0% | |
| ! | TTTGGCTCCTTCAGTATGTG+AGG | + | chr2_2:3904951-3904970 | Msa0231630:CDS | 45.0% |
| CCCAAAACCTCACATACTGA+AGG | - | chr2_2:3904961-3904980 | None:intergenic | 45.0% | |
| ! | ACAACATGGGTTGTCACTGT+TGG | + | chr2_2:3905103-3905122 | Msa0231630:CDS | 45.0% |
| ! | CAACATGGGTTGTCACTGTT+GGG | + | chr2_2:3905104-3905123 | Msa0231630:CDS | 45.0% |
| ! | AACATGGGTTGTCACTGTTG+GGG | + | chr2_2:3905105-3905124 | Msa0231630:CDS | 45.0% |
| ! | CTCTCTGTTTCCATGGGTTA+TGG | + | chr2_2:3905160-3905179 | Msa0231630:CDS | 45.0% |
| TCTTGGCGGTCTTACATCAA+AGG | + | chr2_2:3905198-3905217 | Msa0231630:CDS | 45.0% | |
| ATGATGTATCTGGAAGGGCA+AGG | + | chr2_2:3905293-3905312 | Msa0231630:CDS | 45.0% | |
| !! | AATGCGTCCAAGAAAGCATC+AGG | - | chr2_2:3905334-3905353 | None:intergenic | 45.0% |
| CTGTCTGTATCTTCCTTGTC+AGG | + | chr2_2:3905539-3905558 | Msa0231630:intron | 45.0% | |
| ACCTCTTCAGTTGTCTGGAT+AGG | + | chr2_2:3905627-3905646 | Msa0231630:CDS | 45.0% | |
| ACCTATCCAGACAACTGAAG+AGG | - | chr2_2:3905631-3905650 | None:intergenic | 45.0% | |
| CACCTTTGCATTTAGGTACC+GGG | + | chr2_2:3905878-3905897 | Msa0231630:intron | 45.0% | |
| AAGCTTAAGAGCCCTTAGCT+GGG | - | chr2_2:3906055-3906074 | None:intergenic | 45.0% | |
| TTTCCAAACATGAGGGAGCT+AGG | - | chr2_2:3906099-3906118 | None:intergenic | 45.0% | |
| TGGCCAGTTTCCAAACATGA+GGG | - | chr2_2:3906106-3906125 | None:intergenic | 45.0% | |
| TAGGTAGAAGGTCAGCTACA+TGG | - | chr2_2:3906395-3906414 | None:intergenic | 45.0% | |
| ! | CATTTGGCTGATAGGTTGAG+TGG | - | chr2_2:3906542-3906561 | None:intergenic | 45.0% |
| AGCAGGGATATAAACACCTC+TGG | - | chr2_2:3906702-3906721 | None:intergenic | 45.0% | |
| CAGATCCATTTAATGAGCGC+TGG | + | chr2_2:3906889-3906908 | Msa0231630:CDS | 45.0% | |
| CTTGGATCATCACTGCATTC+TGG | + | chr2_2:3906919-3906938 | Msa0231630:CDS | 45.0% | |
| ! | CACCTTTGAGAACTTTGGGA+AGG | - | chr2_2:3906993-3907012 | None:intergenic | 45.0% |
| GTACGCATACTCAGAGAAAG+TGG | + | chr2_2:3907275-3907294 | Msa0231630:CDS | 45.0% | |
| AAGGGAAAGCAAGAAGGACA+AGG | + | chr2_2:3907336-3907355 | Msa0231630:CDS | 45.0% | |
| TGAAGATGACGAGTCAGAAG+AGG | + | chr2_2:3907416-3907435 | Msa0231630:CDS | 45.0% | |
| ! | TCTGTACTGTTTTCCCTGCT+GGG | + | chr2_2:3907479-3907498 | Msa0231630:three_prime_UTR | 45.0% |
| TGAGACTTGAAAACCCAGCA+GGG | - | chr2_2:3907495-3907514 | None:intergenic | 45.0% | |
| TTGAGACTTGAAAACCCAGC+AGG | - | chr2_2:3907496-3907515 | None:intergenic | 45.0% | |
| GTGGGATTTCCTAGTATGCA+AGG | - | chr2_2:3907694-3907713 | None:intergenic | 45.0% | |
| !! | AAAAAATAATAAATACTAAT+AGG | - | chr2_2:3906228-3906247 | None:intergenic | 5.0% |
| AACTACACCACATACACGCG+CGG | - | chr2_2:3903521-3903540 | None:intergenic | 50.0% | |
| CTCTCTTCGGCAGATGAGAT+TGG | - | chr2_2:3903553-3903572 | None:intergenic | 50.0% | |
| GATGGAATCGGTATGGGAAG+CGG | - | chr2_2:3903851-3903870 | None:intergenic | 50.0% | |
| GTCGTGGATGGAATCGGTAT+GGG | - | chr2_2:3903857-3903876 | None:intergenic | 50.0% | |
| !! | CATACCGATTCCATCCACGA+CGG | + | chr2_2:3903856-3903875 | Msa0231630:CDS | 50.0% |
| ACGACGGCCGTTCTTACATT+CGG | + | chr2_2:3903872-3903891 | Msa0231630:CDS | 50.0% | |
| GCTAGACTGAAATGAAGGGG+AGG | + | chr2_2:3904070-3904089 | Msa0231630:intron | 50.0% | |
| AGACTGAAATGAAGGGGAGG+AGG | + | chr2_2:3904073-3904092 | Msa0231630:intron | 50.0% | |
| TGGAGTGATAAGGAGGGAGA+CGG | - | chr2_2:3904312-3904331 | None:intergenic | 50.0% | |
| GGAGAAGAAAATCTGCAGCC+AGG | + | chr2_2:3904504-3904523 | Msa0231630:CDS | 50.0% | |
| TGATGAGCGGGAAGACAATC+TGG | + | chr2_2:3904837-3904856 | Msa0231630:CDS | 50.0% | |
| CTACCGGGTAAAAACCCATC+AGG | - | chr2_2:3904869-3904888 | None:intergenic | 50.0% | |
| GAAGGAGCCAAACAATGCCA+AGG | - | chr2_2:3904943-3904962 | None:intergenic | 50.0% | |
| TCGCACAACACCATAACCCA+TGG | - | chr2_2:3905173-3905192 | None:intergenic | 50.0% | |
| GATGTAAGACCGCCAAGAGT+GGG | - | chr2_2:3905196-3905215 | None:intergenic | 50.0% | |
| TGATGTAAGACCGCCAAGAG+TGG | - | chr2_2:3905197-3905216 | None:intergenic | 50.0% | |
| ! | GAACTCCGTTTTGCCTGACA+AGG | - | chr2_2:3905555-3905574 | None:intergenic | 50.0% |
| CGGTTACCTCTTCAGTTGTC+TGG | + | chr2_2:3905622-3905641 | Msa0231630:CDS | 50.0% | |
| GGTGTATGTGTCCCAGCTAA+GGG | + | chr2_2:3906041-3906060 | Msa0231630:intron | 50.0% | |
| GAAGCTTAAGAGCCCTTAGC+TGG | - | chr2_2:3906056-3906075 | None:intergenic | 50.0% | |
| TGTCCTAGCTCCCTCATGTT+TGG | + | chr2_2:3906093-3906112 | Msa0231630:intron | 50.0% | |
| GCTCCCTCATGTTTGGAAAC+TGG | + | chr2_2:3906100-3906119 | Msa0231630:intron | 50.0% | |
| GTGGCCAGTTTCCAAACATG+AGG | - | chr2_2:3906107-3906126 | None:intergenic | 50.0% | |
| CTCTGCCAGCGCTCATTAAA+TGG | - | chr2_2:3906897-3906916 | None:intergenic | 50.0% | |
| CGCCTTCCCAAAGTTCTCAA+AGG | + | chr2_2:3906988-3907007 | Msa0231630:CDS | 50.0% | |
| TTTGCCTCTGCGAACTACGT+AGG | + | chr2_2:3907253-3907272 | Msa0231630:intron | 50.0% | |
| CAGGGAAAACAGTACAGACG+TGG | - | chr2_2:3907477-3907496 | None:intergenic | 50.0% | |
| ! | GTCTGTACTGTTTTCCCTGC+TGG | + | chr2_2:3907478-3907497 | Msa0231630:three_prime_UTR | 50.0% |
| AACACCTCCTATTGAGGGTC+GGG | - | chr2_2:3907528-3907547 | None:intergenic | 50.0% | |
| CAACACCTCCTATTGAGGGT+CGG | - | chr2_2:3907529-3907548 | None:intergenic | 50.0% | |
| CGTCGTGGATGGAATCGGTA+TGG | - | chr2_2:3903858-3903877 | None:intergenic | 55.0% | |
| GAATGTAAGAACGGCCGTCG+TGG | - | chr2_2:3903873-3903892 | None:intergenic | 55.0% | |
| GGGAGCTTGTAAGCAAGGAG+AGG | + | chr2_2:3904646-3904665 | Msa0231630:CDS | 55.0% | |
| AGCTTGTGACCCCAAGCTCA+AGG | + | chr2_2:3904808-3904827 | Msa0231630:CDS | 55.0% | |
| !! | GCGCTGGCTTATGTTTGCCT+TGG | + | chr2_2:3904923-3904942 | Msa0231630:CDS | 55.0% |
| GGCCCGGTACCTAAATGCAA+AGG | - | chr2_2:3905883-3905902 | None:intergenic | 55.0% | |
| GGGTGTATGTGTCCCAGCTA+AGG | + | chr2_2:3906040-3906059 | Msa0231630:intron | 55.0% | |
| CGTACCTACGTAGTTCGCAG+AGG | - | chr2_2:3907260-3907279 | None:intergenic | 55.0% | |
| ACACCTCCTATTGAGGGTCG+GGG | - | chr2_2:3907527-3907546 | None:intergenic | 55.0% | |
| GCTAGATCCGCGCGTGTATG+TGG | + | chr2_2:3903511-3903530 | Msa0231630:five_prime_UTR | 60.0% | |
| CTTCTCTCCGGTGGCAGTGA+AGG | + | chr2_2:3903805-3903824 | Msa0231630:CDS | 60.0% | |
| ATGGGAAGCGGTGGAGATGG+AGG | - | chr2_2:3903839-3903858 | None:intergenic | 60.0% | |
| GGTATGGGAAGCGGTGGAGA+TGG | - | chr2_2:3903842-3903861 | None:intergenic | 60.0% | |
| GGAATCGGTATGGGAAGCGG+TGG | - | chr2_2:3903848-3903867 | None:intergenic | 60.0% | |
| ACGGCCGTCGTGGATGGAAT+CGG | - | chr2_2:3903863-3903882 | None:intergenic | 60.0% | |
| GTAAGAACGGCCGTCGTGGA+TGG | - | chr2_2:3903869-3903888 | None:intergenic | 60.0% | |
| ! | GGTGTTGTGCGACCCACTCT+TGG | + | chr2_2:3905181-3905200 | Msa0231630:CDS | 60.0% |
| GTTGTGCGACCCACTCTTGG+CGG | + | chr2_2:3905184-3905203 | Msa0231630:CDS | 60.0% | |
| !! | ATGAGCGCTGGCAGAGTGCT+TGG | + | chr2_2:3906901-3906920 | Msa0231630:CDS | 60.0% |
| CGTCTTCCCCGACCCTCAAT+AGG | + | chr2_2:3907518-3907537 | Msa0231630:three_prime_UTR | 60.0% | |
| CTTCCCCGACCCTCAATAGG+AGG | + | chr2_2:3907521-3907540 | Msa0231630:three_prime_UTR | 60.0% | |
| GGCGATGCCTTCACTGCCAC+CGG | - | chr2_2:3903815-3903834 | None:intergenic | 65.0% | |
| GGAAGCGGTGGAGATGGAGG+CGG | - | chr2_2:3903836-3903855 | None:intergenic | 65.0% | |
| AAATCTGCAGCCAGGGCGCG+TGG | + | chr2_2:3904512-3904531 | Msa0231630:CDS | 65.0% | |
| TGGCACGGTACCACGCGCCC+TGG | - | chr2_2:3904525-3904544 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3903490 | 3907762 | 3903490 | ID=Msa0231630;Name=Msa0231630 |
| chr2_2 | mRNA | 3903490 | 3907762 | 3903490 | ID=Msa0231630-mRNA-1;Parent=Msa0231630;Name=Msa0231630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=192|1|1|1|1|1|5|310|514 |
| chr2_2 | exon | 3903490 | 3903893 | 3903490 | ID=Msa0231630-mRNA-1:exon:1578;Parent=Msa0231630-mRNA-1 |
| chr2_2 | exon | 3904484 | 3905405 | 3904484 | ID=Msa0231630-mRNA-1:exon:1579;Parent=Msa0231630-mRNA-1 |
| chr2_2 | exon | 3905561 | 3905656 | 3905561 | ID=Msa0231630-mRNA-1:exon:1580;Parent=Msa0231630-mRNA-1 |
| chr2_2 | exon | 3906873 | 3907009 | 3906873 | ID=Msa0231630-mRNA-1:exon:1581;Parent=Msa0231630-mRNA-1 |
| chr2_2 | exon | 3907275 | 3907762 | 3907275 | ID=Msa0231630-mRNA-1:exon:1582;Parent=Msa0231630-mRNA-1 |
| chr2_2 | five_prime_UTR | 3903490 | 3903681 | 3903490 | ID=Msa0231630-mRNA-1:five_prime_utr;Parent=Msa0231630-mRNA-1 |
| chr2_2 | CDS | 3903682 | 3903893 | 3903682 | ID=Msa0231630-mRNA-1:cds;Parent=Msa0231630-mRNA-1 |
| chr2_2 | CDS | 3904484 | 3905405 | 3904484 | ID=Msa0231630-mRNA-1:cds;Parent=Msa0231630-mRNA-1 |
| chr2_2 | CDS | 3905561 | 3905656 | 3905561 | ID=Msa0231630-mRNA-1:cds;Parent=Msa0231630-mRNA-1 |
| chr2_2 | CDS | 3906873 | 3907009 | 3906873 | ID=Msa0231630-mRNA-1:cds;Parent=Msa0231630-mRNA-1 |
| chr2_2 | CDS | 3907275 | 3907452 | 3907275 | ID=Msa0231630-mRNA-1:cds;Parent=Msa0231630-mRNA-1 |
| chr2_2 | three_prime_UTR | 3907453 | 3907762 | 3907453 | ID=Msa0231630-mRNA-1:three_prime_utr;Parent=Msa0231630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
