AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1457890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457890 MtrunA17_Chr2g0278311 97.864 515 9 1 1 515 1 513 0.0 1028
Msa1457890 MtrunA17_Chr8g0344451 55.172 493 212 5 25 515 20 505 0.0 558
Msa1457890 MtrunA17_Chr5g0428321 52.115 520 233 6 10 515 24 541 0.0 533
Msa1457890 MtrunA17_Chr8g0334581 42.262 504 238 9 25 515 28 491 1.66e-132 393
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1457890 AT2G01070.1 64.427 506 158 6 11 515 12 496 0.0 664
Msa1457890 AT2G01070.2 64.602 452 147 2 11 461 12 451 0.0 615
Msa1457890 AT1G72480.1 53.737 495 221 4 25 515 19 509 0.0 550
Msa1457890 AT1G61670.1 47.070 512 251 6 13 515 13 513 1.00e-157 459
Msa1457890 AT1G61670.2 47.070 512 251 6 13 515 13 513 1.00e-157 459
Msa1457890 AT1G10980.1 36.765 476 277 9 25 482 25 494 1.68e-101 315

Find 154 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAAGTTCTATGTATTTA+TGG 0.124995 tig0039277:+8687 Msa1457890:CDS
GATATAGGCGGTTCTGTTTA+TGG 0.176908 tig0039277:+8367 Msa1457890:CDS
TCCTTCAGTATGTGAGGTTT+TGG 0.183086 tig0039277:+8743 Msa1457890:CDS
AATACATAGAACTTCTTTAA+TGG 0.194510 tig0039277:-8682 None:intergenic
AGTTCTTCCTGATGCTTTCT+TGG 0.210058 tig0039277:+9110 Msa1457890:CDS
TACATGATATAAAACCATTT+TGG 0.214692 tig0039277:-11390 None:intergenic
CTCTGCCAGCGCTCATTAAA+TGG 0.223361 tig0039277:-10679 None:intergenic
CTCTCTGTTTCCATGGGTTA+TGG 0.230696 tig0039277:+8946 Msa1457890:CDS
CTTGGATCATCACTGCATTC+TGG 0.238611 tig0039277:+10704 Msa1457890:CDS
ATCTCAGCTGTTATTGGTCT+TGG 0.253254 tig0039277:+8793 Msa1457890:CDS
CCTTCCAGATACATCATTAA+TGG 0.253854 tig0039277:-9073 None:intergenic
ACGAGTCAGAAGAGGATAAA+AGG 0.254497 tig0039277:+11208 Msa1457890:CDS
TCACATTCTTTGTTCCAAAA+TGG 0.256294 tig0039277:+11376 Msa1457890:three_prime_UTR
AAAACGGAGTTCTGTTAAAT+TGG 0.268399 tig0039277:+9349 Msa1457890:CDS
TAGAATCTAAACTGATAATT+CGG 0.281464 tig0039277:-8525 None:intergenic
AATTATCAGTTTAGATTCTA+AGG 0.283013 tig0039277:+8528 Msa1457890:CDS
ATACATAGAACTTCTTTAAT+GGG 0.287896 tig0039277:-8681 None:intergenic
CTTCTGCAACTGACACTAAT+TGG 0.289421 tig0039277:+8467 Msa1457890:CDS
CGTTGCAACTTCACTCTCTT+TGG 0.292013 tig0039277:-7113 None:intergenic
TGATCTTGTTAATGCTGAAT+TGG 0.298739 tig0039277:-7191 None:intergenic
TCTGTGTTATATGTTATCTC+TGG 0.300146 tig0039277:+10749 Msa1457890:CDS
CTCTCTTTGGCAGATGAGAT+TGG 0.306309 tig0039277:-7100 None:intergenic
CACTGTATCTCAGCTGTTAT+TGG 0.316682 tig0039277:+8787 Msa1457890:CDS
AGTAAGTTACTCCAAGTAAA+AGG 0.317856 tig0039277:-9008 None:intergenic
GTAAGCAAGGAGAGGTTATC+AGG 0.319461 tig0039277:+8440 Msa1457890:CDS
CAATGCACCTTTGAGAACTT+TGG 0.323697 tig0039277:-10780 None:intergenic
TGATTCCAGTATTGTTGAAA+TGG 0.337002 tig0039277:-8852 None:intergenic
ATGTTTGCCTTGGCATTGTT+TGG 0.340723 tig0039277:+8719 Msa1457890:CDS
TCTCATTCTCTCTGTTTCCA+TGG 0.341282 tig0039277:+8939 Msa1457890:CDS
AGAATCTAAACTGATAATTC+GGG 0.352560 tig0039277:-8524 None:intergenic
ATCACGATATCCTTGAGCTT+GGG 0.360174 tig0039277:-8604 None:intergenic
ACCCATGTTGTGACAATAAT+AGG 0.360700 tig0039277:-8877 None:intergenic
CAACATGGGTTGTCACTGTT+GGG 0.376037 tig0039277:+8890 Msa1457890:CDS
CACCTCTGATTTAGCGAAGA+TGG 0.379472 tig0039277:+8411 Msa1457890:CDS
CTCATTCTCTCTGTTTCCAT+GGG 0.383587 tig0039277:+8940 Msa1457890:CDS
CGGTTACCTCTTCAGTTGTC+TGG 0.383647 tig0039277:+9408 Msa1457890:CDS
AGAAGCCATGTCTCTAACTA+AGG 0.392626 tig0039277:+11101 Msa1457890:CDS
TGATGAGCGGGAAGACAATC+TGG 0.393173 tig0039277:+8623 Msa1457890:CDS
CGTCTTCCCCGACCCTCAAT+AGG 0.393505 tig0039277:+11302 Msa1457890:three_prime_UTR
TATGCCCATTTCAACAATAC+TGG 0.400524 tig0039277:+8847 Msa1457890:CDS
GGGACCATTAATGATGTATC+TGG 0.401387 tig0039277:+9069 Msa1457890:CDS
GATTGTTTGAGATGATTCTC+TGG 0.401399 tig0039277:+8815 Msa1457890:CDS
AATGCACCTTTGAGAACTTT+GGG 0.404433 tig0039277:-10779 None:intergenic
TTGGATCATCACTGCATTCT+GGG 0.410672 tig0039277:+10705 Msa1457890:CDS
CTTTAATGGGGCCATTCTAC+CGG 0.417526 tig0039277:-8668 None:intergenic
CTGTTAAATTGGATATATAC+AGG 0.420090 tig0039277:+9360 Msa1457890:CDS
GGTTTGAAAATATAACCATT+AGG 0.433202 tig0039277:+8269 Msa1457890:intron
AACACCTCCTATTGAGGGTC+GGG 0.433247 tig0039277:-11309 None:intergenic
GCGCTGGCTTATGTTTGCCT+TGG 0.439178 tig0039277:+8709 Msa1457890:CDS
CTTCTCTCCGGTGGCAGTGA+AGG 0.450618 tig0039277:+7358 Msa1457890:CDS
GAAGTTTCTATCACAAAGAC+TGG 0.455857 tig0039277:+8550 Msa1457890:CDS
AATATAGGAGGAGGAGGAGA+AGG 0.456966 tig0039277:-7255 None:intergenic
ATAGAAATGAAAATAAATAT+AGG 0.457478 tig0039277:-7270 None:intergenic
ATGAGCGCTGGCAGAGTGCT+TGG 0.457803 tig0039277:+10686 Msa1457890:CDS
CATCAGAAGATGCATCAGTT+TGG 0.459499 tig0039277:-11176 None:intergenic
GATTCCAGTATTGTTGAAAT+GGG 0.459867 tig0039277:-8851 None:intergenic
GCTGCTGATCGTGATGATAT+AGG 0.468825 tig0039277:+8352 Msa1457890:CDS
AAGGAGAAATAAGTTTAGTC+AGG 0.470161 tig0039277:+11139 Msa1457890:CDS
CGAGTCAGAAGAGGATAAAA+GGG 0.471974 tig0039277:+11209 Msa1457890:CDS
AGTTGTCTGGATAGGTTATG+AGG 0.475557 tig0039277:+9421 Msa1457890:CDS
AAAATAAATATAGGAGGAGG+AGG 0.478489 tig0039277:-7261 None:intergenic
CATTATAGATCTATATTTCA+AGG 0.482028 tig0039277:+8495 Msa1457890:CDS
ACCTCTTCAGTTGTCTGGAT+AGG 0.482984 tig0039277:+9413 Msa1457890:CDS
GTAAGAACGGCCGTCGTGGA+TGG 0.486797 tig0039277:-7419 None:intergenic
GGTGTTGTGCGACCCACTCT+TGG 0.487087 tig0039277:+8967 Msa1457890:CDS
CGTCGTGGATGGAATCGGTA+TGG 0.488362 tig0039277:-7408 None:intergenic
CTGTGTTATATGTTATCTCT+GGG 0.488675 tig0039277:+10750 Msa1457890:CDS
TTTACAACACCTCCTATTGA+GGG 0.489243 tig0039277:-11314 None:intergenic
ACCTCTGATTTAGCGAAGAT+GGG 0.491939 tig0039277:+8412 Msa1457890:CDS
TGGCACGGTACCACGCGCCC+TGG 0.493484 tig0039277:-8308 None:intergenic
AATGCGTCCAAGAAAGCATC+AGG 0.493522 tig0039277:-9117 None:intergenic
CATCACGATATCCTTGAGCT+TGG 0.496078 tig0039277:-8605 None:intergenic
GGTATGGGAAGCGGTGGAGA+TGG 0.496727 tig0039277:-7392 None:intergenic
ATCTTCCTTGTCAGGCAAAA+CGG 0.497564 tig0039277:+9333 Msa1457890:intron
ACAACATGGGTTGTCACTGT+TGG 0.499602 tig0039277:+8889 Msa1457890:CDS
GATGGAATCGGTATGGGAAG+CGG 0.507575 tig0039277:-7401 None:intergenic
ACGACGGCCGTTCTTACATT+CGG 0.509858 tig0039277:+7425 Msa1457890:CDS
GCTAGATCCGCGCGTGTATG+TGG 0.518173 tig0039277:+7061 Msa1457890:five_prime_UTR
CTTTCCCTTAGTTAGAGACA+TGG 0.519744 tig0039277:-11106 None:intergenic
GGAGAAGAAAATCTGCAGCC+AGG 0.520643 tig0039277:+8290 Msa1457890:CDS
AAATATAGATCTATAATGAC+TGG 0.523698 tig0039277:-8490 None:intergenic
GTTCTATGTATTTATGGCGC+TGG 0.529730 tig0039277:+8693 Msa1457890:CDS
CACTTAATTCAATAGTCAGT+GGG 0.530389 tig0039277:-11493 None:intergenic
ATGAAAATAAATATAGGAGG+AGG 0.531020 tig0039277:-7264 None:intergenic
ACGGCCGTCGTGGATGGAAT+CGG 0.533314 tig0039277:-7413 None:intergenic
GGCGATGCCTTCACTGCCAC+CGG 0.538309 tig0039277:-7365 None:intergenic
TTTAATGGGGCCATTCTACC+GGG 0.539654 tig0039277:-8667 None:intergenic
CACCTTTGAGAACTTTGGGA+AGG 0.540818 tig0039277:-10775 None:intergenic
TTGAGACTTGAAAACCCAGC+AGG 0.541326 tig0039277:-11277 None:intergenic
GTGGGATTTCCTAGTATGCA+AGG 0.542253 tig0039277:-11475 None:intergenic
ATTATAGATCTATATTTCAA+GGG 0.543479 tig0039277:+8496 Msa1457890:CDS
CAGATCCATTTAATGAGCGC+TGG 0.543799 tig0039277:+10674 Msa1457890:CDS
GCATTGCCGACATCTTGAAA+AGG 0.544373 tig0039277:-7331 None:intergenic
TCACGATATCCTTGAGCTTG+GGG 0.544856 tig0039277:-8603 None:intergenic
CTCAAGGATATCGTGATGAG+CGG 0.547215 tig0039277:+8610 Msa1457890:CDS
ATGGGAAGCGGTGGAGATGG+AGG 0.547800 tig0039277:-7389 None:intergenic
GTCGTGGATGGAATCGGTAT+GGG 0.564130 tig0039277:-7407 None:intergenic
TTTGGCTCCTTCAGTATGTG+AGG 0.564366 tig0039277:+8737 Msa1457890:CDS
GATGTAAGACCGCCAAGAGT+GGG 0.569323 tig0039277:-8979 None:intergenic
CTCAAATGCACTAGTAGTAA+CGG 0.569649 tig0039277:+9388 Msa1457890:CDS
TCAAGGATATCGTGATGAGC+GGG 0.571538 tig0039277:+8611 Msa1457890:CDS
GAAGCCATGTCTCTAACTAA+GGG 0.572177 tig0039277:+11102 Msa1457890:CDS
CTAACTAAGGGAAAGCAAGA+AGG 0.572370 tig0039277:+11114 Msa1457890:CDS
GGAAGCGGTGGAGATGGAGG+CGG 0.573916 tig0039277:-7386 None:intergenic
CGCCTTCCCAAAGTTCTCAA+AGG 0.574890 tig0039277:+10773 Msa1457890:CDS
GACCTATTATTGTCACAACA+TGG 0.575906 tig0039277:+8875 Msa1457890:CDS
CAACACCTCCTATTGAGGGT+CGG 0.576156 tig0039277:-11310 None:intergenic
AAGATGGGAGCTTGTAAGCA+AGG 0.577447 tig0039277:+8427 Msa1457890:CDS
TGATGTAAGACCGCCAAGAG+TGG 0.580462 tig0039277:-8980 None:intergenic
AATTATAATGTGCATTGGCA+CGG 0.581245 tig0039277:-8323 None:intergenic
TACATAGAACTTCTTTAATG+GGG 0.583432 tig0039277:-8680 None:intergenic
CTTCCCCGACCCTCAATAGG+AGG 0.586533 tig0039277:+11305 Msa1457890:three_prime_UTR
GAGAAGAAAATCTGCAGCCA+GGG 0.587661 tig0039277:+8291 Msa1457890:CDS
AAATCTGCAGCCAGGGCGCG+TGG 0.589551 tig0039277:+8298 Msa1457890:CDS
ACCTATCCAGACAACTGAAG+AGG 0.593355 tig0039277:-9414 None:intergenic
GAAATGAAAATAAATATAGG+AGG 0.595974 tig0039277:-7267 None:intergenic
GAATGTAAGAACGGCCGTCG+TGG 0.596570 tig0039277:-7423 None:intergenic
TCTTGGCGGTCTTACATCAA+AGG 0.598039 tig0039277:+8984 Msa1457890:CDS
ACCTATTATTGTCACAACAT+GGG 0.599977 tig0039277:+8876 Msa1457890:CDS
AGCTTGTGACCCCAAGCTCA+AGG 0.601127 tig0039277:+8594 Msa1457890:CDS
CAATTAGTGTCAGTTGCAGA+AGG 0.601312 tig0039277:-8466 None:intergenic
CCATTAATGATGTATCTGGA+AGG 0.601632 tig0039277:+9073 Msa1457890:CDS
GTTGTGCGACCCACTCTTGG+CGG 0.604378 tig0039277:+8970 Msa1457890:CDS
TCGCACAACACCATAACCCA+TGG 0.605397 tig0039277:-8956 None:intergenic
GTACGCATACTCAGAGAAAG+TGG 0.606384 tig0039277:+11059 Msa1457890:CDS
GATGTGGATGGATGCAAATG+AGG 0.606399 tig0039277:-7296 None:intergenic
GGAATCGGTATGGGAAGCGG+TGG 0.607092 tig0039277:-7398 None:intergenic
AAGGGAAAGCAAGAAGGACA+AGG 0.611902 tig0039277:+11120 Msa1457890:CDS
CTGAATATAACTGAATACGT+GGG 0.613072 tig0039277:+9048 Msa1457890:CDS
CATTAATGATGTATCTGGAA+GGG 0.613255 tig0039277:+9074 Msa1457890:CDS
TGAAGATGACGAGTCAGAAG+AGG 0.617368 tig0039277:+11200 Msa1457890:CDS
CCCAAAACCTCACATACTGA+AGG 0.620914 tig0039277:-8744 None:intergenic
TGAAGAAGACGCGAACAACA+TGG 0.620952 tig0039277:-7230 None:intergenic
TTATAGATCTATATTTCAAG+GGG 0.621028 tig0039277:+8497 Msa1457890:CDS
AACATGGGTTGTCACTGTTG+GGG 0.621382 tig0039277:+8891 Msa1457890:CDS
TCCCATCTTCGCTAAATCAG+AGG 0.621725 tig0039277:-8413 None:intergenic
AAGGTTCGCGATTGTAGATG+TGG 0.624736 tig0039277:-7312 None:intergenic
ACACTTAATTCAATAGTCAG+TGG 0.627581 tig0039277:-11494 None:intergenic
ACACCTCCTATTGAGGGTCG+GGG 0.627766 tig0039277:-11308 None:intergenic
TTCGCGATTGTAGATGTGGA+TGG 0.634523 tig0039277:-7308 None:intergenic
GGGAGCTTGTAAGCAAGGAG+AGG 0.639731 tig0039277:+8432 Msa1457890:CDS
GAAGGAGCCAAACAATGCCA+AGG 0.641996 tig0039277:-8726 None:intergenic
TGGGATTTCCTAGTATGCAA+GGG 0.654291 tig0039277:-11474 None:intergenic
AGCATTACCGAATGTAAGAA+CGG 0.655590 tig0039277:-7432 None:intergenic
AACTGCACCACATACACGCG+CGG 0.660131 tig0039277:-7068 None:intergenic
TGAGACTTGAAAACCCAGCA+GGG 0.660881 tig0039277:-11276 None:intergenic
GCTGAATATAACTGAATACG+TGG 0.662152 tig0039277:+9047 Msa1457890:CDS
TACGCATACTCAGAGAAAGT+GGG 0.662515 tig0039277:+11060 Msa1457890:CDS
CAGGGAAAACAGTACAGACG+TGG 0.678840 tig0039277:-11258 None:intergenic
ATAGGCGGTTCTGTTTATGG+AGG 0.681454 tig0039277:+8370 Msa1457890:CDS
ATGATGTATCTGGAAGGGCA+AGG 0.685625 tig0039277:+9079 Msa1457890:CDS
TGAATATAACTGAATACGTG+GGG 0.689783 tig0039277:+9049 Msa1457890:CDS
GCTGATCGTGATGATATAGG+CGG 0.712191 tig0039277:+8355 Msa1457890:CDS
CATACCGATTCCATCCACGA+CGG 0.807287 tig0039277:+7409 Msa1457890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAATGAAAATAAATAT+AGG - tig0039277:7273-7292 None:intergenic 10.0%
!! AATATTGTTAATTATATGTT+AGG + tig0039277:8059-8078 Msa1457890:intron 10.0%
!! ATATTGTTAATTATATGTTA+GGG + tig0039277:8060-8079 Msa1457890:intron 10.0%
!!! CAAATTGATTTTGAAATATT+TGG + tig0039277:7630-7649 Msa1457890:intron 15.0%
!! TATTGTTAATTATATGTTAG+GGG + tig0039277:8061-8080 Msa1457890:intron 15.0%
!! ATTATAGATCTATATTTCAA+GGG + tig0039277:8496-8515 Msa1457890:CDS 15.0%
!!! ATTGGACTTTTTTTTTTTTT+GGG - tig0039277:9590-9609 None:intergenic 15.0%
!!! TAGTATTTATTATTTTTTCC+TGG + tig0039277:10015-10034 Msa1457890:intron 15.0%
!!! AGTATTTATTATTTTTTCCT+GGG + tig0039277:10016-10035 Msa1457890:intron 15.0%
!! GTAAAATAAAATTGATCAAA+TGG + tig0039277:10398-10417 Msa1457890:intron 15.0%
!! GAAATGAAAATAAATATAGG+AGG - tig0039277:7270-7289 None:intergenic 20.0%
!! TTAGGAATTGTATAATTTGA+TGG + tig0039277:7528-7547 Msa1457890:intron 20.0%
!! ACAAAAAAAAAAACAGGTAA+TGG - tig0039277:7917-7936 None:intergenic 20.0%
!! GAAATGTAAAAAATTGCATA+TGG + tig0039277:8009-8028 Msa1457890:intron 20.0%
!! TCATTGTATATGGATTTATA+TGG + tig0039277:8168-8187 Msa1457890:intron 20.0%
!! TCAAAAATTATAATGTGCAT+TGG - tig0039277:8331-8350 None:intergenic 20.0%
!!! AATGCACATTATAATTTTTG+AGG + tig0039277:8330-8349 Msa1457890:CDS 20.0%
!! AAATATAGATCTATAATGAC+TGG - tig0039277:8493-8512 None:intergenic 20.0%
!! CATTATAGATCTATATTTCA+AGG + tig0039277:8495-8514 Msa1457890:CDS 20.0%
!! TTATAGATCTATATTTCAAG+GGG + tig0039277:8497-8516 Msa1457890:CDS 20.0%
!! TAGAATCTAAACTGATAATT+CGG - tig0039277:8528-8547 None:intergenic 20.0%
!! AATTATCAGTTTAGATTCTA+AGG + tig0039277:8528-8547 Msa1457890:CDS 20.0%
!! ATACATAGAACTTCTTTAAT+GGG - tig0039277:8684-8703 None:intergenic 20.0%
!! AATACATAGAACTTCTTTAA+TGG - tig0039277:8685-8704 None:intergenic 20.0%
!! AAAGAAGTTCTATGTATTTA+TGG + tig0039277:8687-8706 Msa1457890:CDS 20.0%
!!! TTATTTTGTGCAATATAACA+TGG + tig0039277:9465-9484 Msa1457890:intron 20.0%
!!! GATTGGACTTTTTTTTTTTT+TGG - tig0039277:9591-9610 None:intergenic 20.0%
!! AAGAGAAAGTAAATTAAAGT+CGG - tig0039277:9614-9633 None:intergenic 20.0%
!!! AGAAATATTAACTTGTTGAA+TGG + tig0039277:9985-10004 Msa1457890:intron 20.0%
!!! GATTTTCTTATTATTTTCTC+AGG - tig0039277:10109-10128 None:intergenic 20.0%
!!! TGTTTTCTTGATATTTGATA+CGG - tig0039277:10230-10249 None:intergenic 20.0%
!! ACAAATTATTAATAGAGAAG+AGG + tig0039277:10247-10266 Msa1457890:intron 20.0%
!! CAAATTATTAATAGAGAAGA+GGG + tig0039277:10248-10267 Msa1457890:intron 20.0%
!!! ATTTAGTTTCCAATTTTTTG+AGG - tig0039277:10299-10318 None:intergenic 20.0%
!!! AAAATTTTGTTCATTTGTAC+TGG + tig0039277:11334-11353 Msa1457890:three_prime_UTR 20.0%
!!! TACATGATATAAAACCATTT+TGG - tig0039277:11393-11412 None:intergenic 20.0%
! ATGAAAATAAATATAGGAGG+AGG - tig0039277:7267-7286 None:intergenic 25.0%
! CAAGTTAGAATCAATTCTAA+AGG - tig0039277:7681-7700 None:intergenic 25.0%
! TCTAACTTGAAACTAGAATT+TGG + tig0039277:7692-7711 Msa1457890:intron 25.0%
!!! TGTTTGGATTTATTTTACCA+AGG + tig0039277:7851-7870 Msa1457890:intron 25.0%
!!! ATGGAGTTACATTTTTTTAG+TGG + tig0039277:8028-8047 Msa1457890:intron 25.0%
!!! AACATATAAGGTTGGTTTTA+TGG - tig0039277:8143-8162 None:intergenic 25.0%
! ACAATGAGATGTAACATATA+AGG - tig0039277:8155-8174 None:intergenic 25.0%
! ATGTTACATCTCATTGTATA+TGG + tig0039277:8158-8177 Msa1457890:intron 25.0%
! TGACATATCATTCAAATATG+AGG - tig0039277:8207-8226 None:intergenic 25.0%
! GGTTTGAAAATATAACCATT+AGG + tig0039277:8269-8288 Msa1457890:intron 25.0%
! AGAATCTAAACTGATAATTC+GGG - tig0039277:8527-8546 None:intergenic 25.0%
! TACATAGAACTTCTTTAATG+GGG - tig0039277:8683-8702 None:intergenic 25.0%
! CAATAAGAAAAACAATAGCA+CGG + tig0039277:8914-8933 Msa1457890:CDS 25.0%
! AACAGAAAAATTTAGAGGTA+GGG - tig0039277:9261-9280 None:intergenic 25.0%
! TAACAGAAAAATTTAGAGGT+AGG - tig0039277:9262-9281 None:intergenic 25.0%
!! ACCTCTAAATTTTTCTGTTA+TGG + tig0039277:9262-9281 Msa1457890:intron 25.0%
! TCCATAACAGAAAAATTTAG+AGG - tig0039277:9266-9285 None:intergenic 25.0%
! CAAACATATTTGAAAAAAGG+AGG - tig0039277:9300-9319 None:intergenic 25.0%
!!! CTCCTTTTTTCAAATATGTT+TGG + tig0039277:9298-9317 Msa1457890:intron 25.0%
! TGCCAAACATATTTGAAAAA+AGG - tig0039277:9303-9322 None:intergenic 25.0%
! CTGTTAAATTGGATATATAC+AGG + tig0039277:9360-9379 Msa1457890:CDS 25.0%
! ATTTCAGTTACTAATACAAG+AGG - tig0039277:9492-9511 None:intergenic 25.0%
! AGAGAAAGTAAATTAAAGTC+GGG - tig0039277:9613-9632 None:intergenic 25.0%
! AATAGGAAATATAAAGGAAC+AGG - tig0039277:9689-9708 None:intergenic 25.0%
! GTGAGAAATAGGAAATATAA+AGG - tig0039277:9695-9714 None:intergenic 25.0%
! ATAGAGTAATGTGATTTATC+TGG + tig0039277:9726-9745 Msa1457890:intron 25.0%
! AATGAGTGAAAATAACTTAC+AGG + tig0039277:9759-9778 Msa1457890:intron 25.0%
! TGTGAGAAAAAAAAACTAAG+AGG + tig0039277:10056-10075 Msa1457890:intron 25.0%
!!! ATAACAAGCCTTATTCTAAT+AGG - tig0039277:10199-10218 None:intergenic 25.0%
! GTAAAGTTAGCATATATTGA+TGG - tig0039277:10630-10649 None:intergenic 25.0%
!!! TATGCTAACTTTACTTTTAC+AGG + tig0039277:10636-10655 Msa1457890:intron 25.0%
! TTGAAATTTACAATGTTGTG+TGG + tig0039277:10882-10901 Msa1457890:intron 25.0%
! TGAAATTTACAATGTTGTGT+GGG + tig0039277:10883-10902 Msa1457890:intron 25.0%
! TAGTAAAGCCGTAAAAAAAA+GGG + tig0039277:10929-10948 Msa1457890:intron 25.0%
!!! GTTTTTTGCCCTTTTTTTTA+CGG - tig0039277:10940-10959 None:intergenic 25.0%
! TCTCTTTTCAGCATTCTTTT+CGG + tig0039277:7164-7183 Msa1457890:five_prime_UTR 30.0%
TGATCTTGTTAATGCTGAAT+TGG - tig0039277:7194-7213 None:intergenic 30.0%
AAAATAAATATAGGAGGAGG+AGG - tig0039277:7264-7283 None:intergenic 30.0%
TTACTTATGCACACTTTAGA+TGG + tig0039277:7480-7499 Msa1457890:intron 30.0%
CATATCAACATTTCTGTCTT+AGG + tig0039277:7510-7529 Msa1457890:intron 30.0%
GGCGTAAGAAAAATTGATTA+TGG - tig0039277:7812-7831 None:intergenic 30.0%
!!! ACCTGTTTTTTTTTTTGTCG+AGG + tig0039277:7919-7938 Msa1457890:intron 30.0%
ACCTCGACAAAAAAAAAAAC+AGG - tig0039277:7923-7942 None:intergenic 30.0%
! AGATAAATAGTGGAGTGATA+AGG - tig0039277:8108-8127 None:intergenic 30.0%
!!! ATAAGGTTGGTTTTATGGTT+GGG - tig0039277:8138-8157 None:intergenic 30.0%
!!! TATAAGGTTGGTTTTATGGT+TGG - tig0039277:8139-8158 None:intergenic 30.0%
TGAGATGTAACATATAAGGT+TGG - tig0039277:8151-8170 None:intergenic 30.0%
! AATTATAATGTGCATTGGCA+CGG - tig0039277:8326-8345 None:intergenic 30.0%
GATTCCAGTATTGTTGAAAT+GGG - tig0039277:8854-8873 None:intergenic 30.0%
TGATTCCAGTATTGTTGAAA+TGG - tig0039277:8855-8874 None:intergenic 30.0%
ACCTATTATTGTCACAACAT+GGG + tig0039277:8876-8895 Msa1457890:CDS 30.0%
AGTAAGTTACTCCAAGTAAA+AGG - tig0039277:9011-9030 None:intergenic 30.0%
CTGAATATAACTGAATACGT+GGG + tig0039277:9048-9067 Msa1457890:CDS 30.0%
TGAATATAACTGAATACGTG+GGG + tig0039277:9049-9068 Msa1457890:CDS 30.0%
CATTAATGATGTATCTGGAA+GGG + tig0039277:9074-9093 Msa1457890:CDS 30.0%
!!! TGGACGCATTTTTGATTTTA+TGG + tig0039277:9130-9149 Msa1457890:CDS 30.0%
AAAAACACTAGAACAGTTAC+AGG + tig0039277:9170-9189 Msa1457890:CDS 30.0%
TTGAGCAAAGATAATAGGTA+CGG - tig0039277:9218-9237 None:intergenic 30.0%
AAAACGGAGTTCTGTTAAAT+TGG + tig0039277:9349-9368 Msa1457890:CDS 30.0%
AAGTAAATTAAAGTCGGGAT+TGG - tig0039277:9608-9627 None:intergenic 30.0%
! TATTTCCTATTTCTCACAAG+TGG + tig0039277:9698-9717 Msa1457890:intron 30.0%
! TTTTACCACTTGTGAGAAAT+AGG - tig0039277:9706-9725 None:intergenic 30.0%
AGTGAAAATAACTTACAGGA+AGG + tig0039277:9763-9782 Msa1457890:intron 30.0%
ACATTCAGTTGTCAATGTAT+GGG + tig0039277:9805-9824 Msa1457890:intron 30.0%
ACCTTCTACCTATTAGAATA+AGG + tig0039277:10188-10207 Msa1457890:intron 30.0%
TCAAGGAAACCTCAAAAAAT+TGG + tig0039277:10287-10306 Msa1457890:intron 30.0%
! GCATTTTTCTCTTGTTCATT+TGG - tig0039277:10343-10362 None:intergenic 30.0%
AGAGAAAAATGCATGATCAA+AGG + tig0039277:10351-10370 Msa1457890:intron 30.0%
TGAATCAAGTGATGACTAAA+TGG + tig0039277:10425-10444 Msa1457890:intron 30.0%
GAATCAAGTGATGACTAAAT+GGG + tig0039277:10426-10445 Msa1457890:intron 30.0%
! AAATGGGATTCTTCATTTTG+TGG + tig0039277:10442-10461 Msa1457890:intron 30.0%
TCTGTGTTATATGTTATCTC+TGG + tig0039277:10749-10768 Msa1457890:CDS 30.0%
CTGTGTTATATGTTATCTCT+GGG + tig0039277:10750-10769 Msa1457890:CDS 30.0%
GTAGTAAAGCCGTAAAAAAA+AGG + tig0039277:10928-10947 Msa1457890:intron 30.0%
AAGGAGAAATAAGTTTAGTC+AGG + tig0039277:11139-11158 Msa1457890:CDS 30.0%
TCACATTCTTTGTTCCAAAA+TGG + tig0039277:11376-11395 Msa1457890:three_prime_UTR 30.0%
CACTTAATTCAATAGTCAGT+GGG - tig0039277:11496-11515 None:intergenic 30.0%
ACACTTAATTCAATAGTCAG+TGG - tig0039277:11497-11516 None:intergenic 30.0%
AGCATTACCGAATGTAAGAA+CGG - tig0039277:7435-7454 None:intergenic 35.0%
TAGATGCTAGACTCAAATGA+AGG + tig0039277:7553-7572 Msa1457890:intron 35.0%
AGATGCTAGACTCAAATGAA+GGG + tig0039277:7554-7573 Msa1457890:intron 35.0%
!! GATATGTTTGGTTCCACTTT+TGG + tig0039277:7580-7599 Msa1457890:intron 35.0%
!!! GACACCTCTAGAATCAATTT+TGG - tig0039277:7611-7630 None:intergenic 35.0%
GAGCTATGTTTGTGTAAAGT+GGG - tig0039277:7765-7784 None:intergenic 35.0%
TGAGCTATGTTTGTGTAAAG+TGG - tig0039277:7766-7785 None:intergenic 35.0%
AATCCAAACATACACGTGTT+TGG - tig0039277:7841-7860 None:intergenic 35.0%
TTCACCAAACTGTTAACTAC+CGG - tig0039277:7893-7912 None:intergenic 35.0%
! AAATAGTGGAGTGATAAGGA+GGG - tig0039277:8104-8123 None:intergenic 35.0%
! TAAATAGTGGAGTGATAAGG+AGG - tig0039277:8105-8124 None:intergenic 35.0%
! TGCAGATTTTCTTCTCCTAA+TGG - tig0039277:8287-8306 None:intergenic 35.0%
GAAGTTTCTATCACAAAGAC+TGG + tig0039277:8550-8569 Msa1457890:CDS 35.0%
! GATTGTTTGAGATGATTCTC+TGG + tig0039277:8815-8834 Msa1457890:CDS 35.0%
TATGCCCATTTCAACAATAC+TGG + tig0039277:8847-8866 Msa1457890:CDS 35.0%
GACCTATTATTGTCACAACA+TGG + tig0039277:8875-8894 Msa1457890:CDS 35.0%
ACCCATGTTGTGACAATAAT+AGG - tig0039277:8880-8899 None:intergenic 35.0%
! ACATCAAAGGTCCTTTTACT+TGG + tig0039277:8997-9016 Msa1457890:CDS 35.0%
GCTGAATATAACTGAATACG+TGG + tig0039277:9047-9066 Msa1457890:CDS 35.0%
CCTTCCAGATACATCATTAA+TGG - tig0039277:9076-9095 None:intergenic 35.0%
CCATTAATGATGTATCTGGA+AGG + tig0039277:9073-9092 Msa1457890:CDS 35.0%
TGAGCAAAGATAATAGGTAC+GGG - tig0039277:9217-9236 None:intergenic 35.0%
GGAACTTGAGCAAAGATAAT+AGG - tig0039277:9223-9242 None:intergenic 35.0%
CTCAAATGCACTAGTAGTAA+CGG + tig0039277:9388-9407 Msa1457890:CDS 35.0%
GTAATATAACACAGCGAAAC+AGG - tig0039277:9546-9565 None:intergenic 35.0%
TCCATATCACCTTTGCATTT+AGG + tig0039277:9656-9675 Msa1457890:intron 35.0%
ACCTAAATGCAAAGGTGATA+TGG - tig0039277:9660-9679 None:intergenic 35.0%
! GAATGTGTTGCATGGTATTT+TGG - tig0039277:9791-9810 None:intergenic 35.0%
CACATTCAGTTGTCAATGTA+TGG + tig0039277:9804-9823 Msa1457890:intron 35.0%
! ACAACGTAGATAAGCTCTAA+AGG - tig0039277:9916-9935 None:intergenic 35.0%
AGTGTAGAAATGCTAGCATT+TGG + tig0039277:9946-9965 Msa1457890:intron 35.0%
TTTCCTGGGTAAATATCAAG+TGG + tig0039277:10030-10049 Msa1457890:intron 35.0%
TATCCACTTGATATTTACCC+AGG - tig0039277:10036-10055 None:intergenic 35.0%
AAGAGGCTTCTGATTAGAAA+AGG + tig0039277:10073-10092 Msa1457890:intron 35.0%
AGAGGCTTCTGATTAGAAAA+GGG + tig0039277:10074-10093 Msa1457890:intron 35.0%
! GCCTTATTCTAATAGGTAGA+AGG - tig0039277:10192-10211 None:intergenic 35.0%
GTCAAACACAAACAAAAGCA+GGG - tig0039277:10503-10522 None:intergenic 35.0%
AGTCAAACACAAACAAAAGC+AGG - tig0039277:10504-10523 None:intergenic 35.0%
! AATGCACCTTTGAGAACTTT+GGG - tig0039277:10782-10801 None:intergenic 35.0%
ATTCTAACGTCTGATTCAGA+TGG + tig0039277:10983-11002 Msa1457890:intron 35.0%
CAAAAGAAGTGAGACTCTAT+CGG - tig0039277:11012-11031 None:intergenic 35.0%
TTAGTCAGGCAAGAGAAAAA+TGG + tig0039277:11153-11172 Msa1457890:CDS 35.0%
TTTACAACACCTCCTATTGA+GGG - tig0039277:11317-11336 None:intergenic 35.0%
! TTTTACAACACCTCCTATTG+AGG - tig0039277:11318-11337 None:intergenic 35.0%
GATGCTAGACTCAAATGAAG+GGG + tig0039277:7555-7574 Msa1457890:intron 40.0%
AATGAAGGGGACGATATGTT+TGG + tig0039277:7568-7587 Msa1457890:intron 40.0%
!! ATGTTTGGTTCCACTTTTGG+AGG + tig0039277:7583-7602 Msa1457890:intron 40.0%
!!! AATTTTGGCTCCTCCAAAAG+TGG - tig0039277:7596-7615 None:intergenic 40.0%
! GGAGCCAAAATTGATTCTAG+AGG + tig0039277:7604-7623 Msa1457890:intron 40.0%
GCACTCGAGTAGAATTGATT+TGG + tig0039277:7655-7674 Msa1457890:intron 40.0%
GAACCAAACACGTGTATGTT+TGG + tig0039277:7835-7854 Msa1457890:intron 40.0%
CTCATGCTTCATCAATCTCA+TGG - tig0039277:7966-7985 None:intergenic 40.0%
!!! ACACTGACTTTTTCTGCTTG+TGG + tig0039277:8240-8259 Msa1457890:intron 40.0%
!!! CACTGACTTTTTCTGCTTGT+GGG + tig0039277:8241-8260 Msa1457890:intron 40.0%
! TTTTTCTGCTTGTGGGTGAT+AGG + tig0039277:8248-8267 Msa1457890:intron 40.0%
GATATAGGCGGTTCTGTTTA+TGG + tig0039277:8367-8386 Msa1457890:CDS 40.0%
ACCTCTGATTTAGCGAAGAT+GGG + tig0039277:8412-8431 Msa1457890:CDS 40.0%
CAATTAGTGTCAGTTGCAGA+AGG - tig0039277:8469-8488 None:intergenic 40.0%
CTTCTGCAACTGACACTAAT+TGG + tig0039277:8467-8486 Msa1457890:CDS 40.0%
ATCACGATATCCTTGAGCTT+GGG - tig0039277:8607-8626 None:intergenic 40.0%
ACAATCTGGAAAAACCCTGA+TGG + tig0039277:8637-8656 Msa1457890:CDS 40.0%
CAATCTGGAAAAACCCTGAT+GGG + tig0039277:8638-8657 Msa1457890:CDS 40.0%
GTTCTATGTATTTATGGCGC+TGG + tig0039277:8693-8712 Msa1457890:CDS 40.0%
ATGTTTGCCTTGGCATTGTT+TGG + tig0039277:8719-8738 Msa1457890:CDS 40.0%
! TCCTTCAGTATGTGAGGTTT+TGG + tig0039277:8743-8762 Msa1457890:CDS 40.0%
! CCTTCAGTATGTGAGGTTTT+GGG + tig0039277:8744-8763 Msa1457890:CDS 40.0%
CACTGTATCTCAGCTGTTAT+TGG + tig0039277:8787-8806 Msa1457890:CDS 40.0%
! ATCTCAGCTGTTATTGGTCT+TGG + tig0039277:8793-8812 Msa1457890:CDS 40.0%
TCTCATTCTCTCTGTTTCCA+TGG + tig0039277:8939-8958 Msa1457890:CDS 40.0%
CTCATTCTCTCTGTTTCCAT+GGG + tig0039277:8940-8959 Msa1457890:CDS 40.0%
GGGACCATTAATGATGTATC+TGG + tig0039277:9069-9088 Msa1457890:CDS 40.0%
AGTTCTTCCTGATGCTTTCT+TGG + tig0039277:9110-9129 Msa1457890:CDS 40.0%
!! GTAGGGTGCTGTAAAATAGT+AGG - tig0039277:9244-9263 None:intergenic 40.0%
ATCTTCCTTGTCAGGCAAAA+CGG + tig0039277:9333-9352 Msa1457890:intron 40.0%
AGTTGTCTGGATAGGTTATG+AGG + tig0039277:9421-9440 Msa1457890:CDS 40.0%
TCACCTTTGCATTTAGGTAC+CGG + tig0039277:9662-9681 Msa1457890:intron 40.0%
GAAATATAAAGGAACAGGCC+CGG - tig0039277:9684-9703 None:intergenic 40.0%
TGACAACTGAATGTGTTGCA+TGG - tig0039277:9799-9818 None:intergenic 40.0%
!! GTAGATAAGCTCTAAAGGAG+TGG - tig0039277:9911-9930 None:intergenic 40.0%
CTTCTGATTAGAAAAGGGAG+AGG + tig0039277:10079-10098 Msa1457890:intron 40.0%
GAGCTCAAAGAACATTGTCA+AGG + tig0039277:10270-10289 Msa1457890:intron 40.0%
CTCTTGTTCATTTGGCTGAT+AGG - tig0039277:10335-10354 None:intergenic 40.0%
AGCAGGGATATAAACACATC+TGG - tig0039277:10487-10506 None:intergenic 40.0%
TTGGATCATCACTGCATTCT+GGG + tig0039277:10705-10724 Msa1457890:CDS 40.0%
! CAATGCACCTTTGAGAACTT+TGG - tig0039277:10783-10802 None:intergenic 40.0%
TTTACAATGTTGTGTGGGTG+AGG + tig0039277:10888-10907 Msa1457890:intron 40.0%
TACGCATACTCAGAGAAAGT+GGG + tig0039277:11060-11079 Msa1457890:CDS 40.0%
AGAAGCCATGTCTCTAACTA+AGG + tig0039277:11101-11120 Msa1457890:CDS 40.0%
GAAGCCATGTCTCTAACTAA+GGG + tig0039277:11102-11121 Msa1457890:CDS 40.0%
CTTTCCCTTAGTTAGAGACA+TGG - tig0039277:11109-11128 None:intergenic 40.0%
CTAACTAAGGGAAAGCAAGA+AGG + tig0039277:11114-11133 Msa1457890:CDS 40.0%
CATCAGAAGATGCATCAGTT+TGG - tig0039277:11179-11198 None:intergenic 40.0%
ACGAGTCAGAAGAGGATAAA+AGG + tig0039277:11208-11227 Msa1457890:CDS 40.0%
CGAGTCAGAAGAGGATAAAA+GGG + tig0039277:11209-11228 Msa1457890:CDS 40.0%
! TCTTTTAGCCCTTGCATACT+AGG + tig0039277:11466-11485 Msa1457890:three_prime_UTR 40.0%
TGGGATTTCCTAGTATGCAA+GGG - tig0039277:11477-11496 None:intergenic 40.0%
CTCTCTTTGGCAGATGAGAT+TGG - tig0039277:7103-7122 None:intergenic 45.0%
CGTTGCAACTTCACTCTCTT+TGG - tig0039277:7116-7135 None:intergenic 45.0%
TGAAGAAGACGCGAACAACA+TGG - tig0039277:7233-7252 None:intergenic 45.0%
AATATAGGAGGAGGAGGAGA+AGG - tig0039277:7258-7277 None:intergenic 45.0%
GATGTGGATGGATGCAAATG+AGG - tig0039277:7299-7318 None:intergenic 45.0%
TTCGCGATTGTAGATGTGGA+TGG - tig0039277:7311-7330 None:intergenic 45.0%
AAGGTTCGCGATTGTAGATG+TGG - tig0039277:7315-7334 None:intergenic 45.0%
!! CGCGAACCTTTTCAAGATGT+CGG + tig0039277:7325-7344 Msa1457890:CDS 45.0%
GCATTGCCGACATCTTGAAA+AGG - tig0039277:7334-7353 None:intergenic 45.0%
! GGCAATGCTTTTCTTCTCTC+CGG + tig0039277:7346-7365 Msa1457890:CDS 45.0%
! AATGCTTTTCTTCTCTCCGG+TGG + tig0039277:7349-7368 Msa1457890:CDS 45.0%
!! CATACACGTGTTTGGTTCTG+CGG - tig0039277:7833-7852 None:intergenic 45.0%
TGAGCCGGTAGTTAACAGTT+TGG + tig0039277:7886-7905 Msa1457890:intron 45.0%
GGGATGGAGGAGATAAATAG+TGG - tig0039277:8118-8137 None:intergenic 45.0%
!!! TGGTTTTATGGTTGGGATGG+AGG - tig0039277:8131-8150 None:intergenic 45.0%
!!! GGTTGGTTTTATGGTTGGGA+TGG - tig0039277:8134-8153 None:intergenic 45.0%
GAGAAGAAAATCTGCAGCCA+GGG + tig0039277:8291-8310 Msa1457890:CDS 45.0%
GCTGCTGATCGTGATGATAT+AGG + tig0039277:8352-8371 Msa1457890:CDS 45.0%
GCTGATCGTGATGATATAGG+CGG + tig0039277:8355-8374 Msa1457890:CDS 45.0%
ATAGGCGGTTCTGTTTATGG+AGG + tig0039277:8370-8389 Msa1457890:CDS 45.0%
CACCTCTGATTTAGCGAAGA+TGG + tig0039277:8411-8430 Msa1457890:CDS 45.0%
TCCCATCTTCGCTAAATCAG+AGG - tig0039277:8416-8435 None:intergenic 45.0%
AAGATGGGAGCTTGTAAGCA+AGG + tig0039277:8427-8446 Msa1457890:CDS 45.0%
GTAAGCAAGGAGAGGTTATC+AGG + tig0039277:8440-8459 Msa1457890:CDS 45.0%
TCACGATATCCTTGAGCTTG+GGG - tig0039277:8606-8625 None:intergenic 45.0%
CATCACGATATCCTTGAGCT+TGG - tig0039277:8608-8627 None:intergenic 45.0%
CTCAAGGATATCGTGATGAG+CGG + tig0039277:8610-8629 Msa1457890:CDS 45.0%
TCAAGGATATCGTGATGAGC+GGG + tig0039277:8611-8630 Msa1457890:CDS 45.0%
!!! AACCCTGATGGGTTTTTACC+CGG + tig0039277:8649-8668 Msa1457890:CDS 45.0%
TACCGGGTAAAAACCCATCA+GGG - tig0039277:8654-8673 None:intergenic 45.0%
! TGGGTTTTTACCCGGTAGAA+TGG + tig0039277:8657-8676 Msa1457890:CDS 45.0%
TTTAATGGGGCCATTCTACC+GGG - tig0039277:8670-8689 None:intergenic 45.0%
CTTTAATGGGGCCATTCTAC+CGG - tig0039277:8671-8690 None:intergenic 45.0%
! TTTGGCTCCTTCAGTATGTG+AGG + tig0039277:8737-8756 Msa1457890:CDS 45.0%
CCCAAAACCTCACATACTGA+AGG - tig0039277:8747-8766 None:intergenic 45.0%
! ACAACATGGGTTGTCACTGT+TGG + tig0039277:8889-8908 Msa1457890:CDS 45.0%
! CAACATGGGTTGTCACTGTT+GGG + tig0039277:8890-8909 Msa1457890:CDS 45.0%
! AACATGGGTTGTCACTGTTG+GGG + tig0039277:8891-8910 Msa1457890:CDS 45.0%
! CTCTCTGTTTCCATGGGTTA+TGG + tig0039277:8946-8965 Msa1457890:CDS 45.0%
TCTTGGCGGTCTTACATCAA+AGG + tig0039277:8984-9003 Msa1457890:CDS 45.0%
ATGATGTATCTGGAAGGGCA+AGG + tig0039277:9079-9098 Msa1457890:CDS 45.0%
!! AATGCGTCCAAGAAAGCATC+AGG - tig0039277:9120-9139 None:intergenic 45.0%
CTGTCTGTATCTTCCTTGTC+AGG + tig0039277:9325-9344 Msa1457890:intron 45.0%
ACCTCTTCAGTTGTCTGGAT+AGG + tig0039277:9413-9432 Msa1457890:CDS 45.0%
ACCTATCCAGACAACTGAAG+AGG - tig0039277:9417-9436 None:intergenic 45.0%
CACCTTTGCATTTAGGTACC+GGG + tig0039277:9663-9682 Msa1457890:intron 45.0%
AAGCTTAAGAGCCCTTAGCT+GGG - tig0039277:9840-9859 None:intergenic 45.0%
TTTCCAAACATGAGGGAGCT+AGG - tig0039277:9884-9903 None:intergenic 45.0%
TGGCCAGTTTCCAAACATGA+GGG - tig0039277:9891-9910 None:intergenic 45.0%
TAGGTAGAAGGTCAGCTACA+TGG - tig0039277:10180-10199 None:intergenic 45.0%
! CATTTGGCTGATAGGTTGAG+TGG - tig0039277:10327-10346 None:intergenic 45.0%
CAGATCCATTTAATGAGCGC+TGG + tig0039277:10674-10693 Msa1457890:CDS 45.0%
CTTGGATCATCACTGCATTC+TGG + tig0039277:10704-10723 Msa1457890:CDS 45.0%
! CACCTTTGAGAACTTTGGGA+AGG - tig0039277:10778-10797 None:intergenic 45.0%
GTACGCATACTCAGAGAAAG+TGG + tig0039277:11059-11078 Msa1457890:CDS 45.0%
AAGGGAAAGCAAGAAGGACA+AGG + tig0039277:11120-11139 Msa1457890:CDS 45.0%
TGAAGATGACGAGTCAGAAG+AGG + tig0039277:11200-11219 Msa1457890:CDS 45.0%
! TCTGTACTGTTTTCCCTGCT+GGG + tig0039277:11263-11282 Msa1457890:three_prime_UTR 45.0%
TGAGACTTGAAAACCCAGCA+GGG - tig0039277:11279-11298 None:intergenic 45.0%
TTGAGACTTGAAAACCCAGC+AGG - tig0039277:11280-11299 None:intergenic 45.0%
GTGGGATTTCCTAGTATGCA+AGG - tig0039277:11478-11497 None:intergenic 45.0%
!! AAAAAATAATAAATACTAAT+AGG - tig0039277:10013-10032 None:intergenic 5.0%
GATGGAATCGGTATGGGAAG+CGG - tig0039277:7404-7423 None:intergenic 50.0%
GTCGTGGATGGAATCGGTAT+GGG - tig0039277:7410-7429 None:intergenic 50.0%
!! CATACCGATTCCATCCACGA+CGG + tig0039277:7409-7428 Msa1457890:CDS 50.0%
ACGACGGCCGTTCTTACATT+CGG + tig0039277:7425-7444 Msa1457890:CDS 50.0%
GCTCATCTTACACTGGTCCT+TGG - tig0039277:7871-7890 None:intergenic 50.0%
AGGACCAGTGTAAGATGAGC+CGG + tig0039277:7871-7890 Msa1457890:intron 50.0%
!! ACTACCGGCTCATCTTACAC+TGG - tig0039277:7878-7897 None:intergenic 50.0%
TGGAGTGATAAGGAGGGAGA+CGG - tig0039277:8098-8117 None:intergenic 50.0%
GGAGAAGAAAATCTGCAGCC+AGG + tig0039277:8290-8309 Msa1457890:CDS 50.0%
TGATGAGCGGGAAGACAATC+TGG + tig0039277:8623-8642 Msa1457890:CDS 50.0%
CTACCGGGTAAAAACCCATC+AGG - tig0039277:8655-8674 None:intergenic 50.0%
GAAGGAGCCAAACAATGCCA+AGG - tig0039277:8729-8748 None:intergenic 50.0%
TCGCACAACACCATAACCCA+TGG - tig0039277:8959-8978 None:intergenic 50.0%
GATGTAAGACCGCCAAGAGT+GGG - tig0039277:8982-9001 None:intergenic 50.0%
TGATGTAAGACCGCCAAGAG+TGG - tig0039277:8983-9002 None:intergenic 50.0%
! GAACTCCGTTTTGCCTGACA+AGG - tig0039277:9341-9360 None:intergenic 50.0%
CGGTTACCTCTTCAGTTGTC+TGG + tig0039277:9408-9427 Msa1457890:CDS 50.0%
GGTGTATGTGTCCCAGCTAA+GGG + tig0039277:9826-9845 Msa1457890:intron 50.0%
GAAGCTTAAGAGCCCTTAGC+TGG - tig0039277:9841-9860 None:intergenic 50.0%
TGTCCTAGCTCCCTCATGTT+TGG + tig0039277:9878-9897 Msa1457890:intron 50.0%
GCTCCCTCATGTTTGGAAAC+TGG + tig0039277:9885-9904 Msa1457890:intron 50.0%
GTGGCCAGTTTCCAAACATG+AGG - tig0039277:9892-9911 None:intergenic 50.0%
CTCTGCCAGCGCTCATTAAA+TGG - tig0039277:10682-10701 None:intergenic 50.0%
CGCCTTCCCAAAGTTCTCAA+AGG + tig0039277:10773-10792 Msa1457890:CDS 50.0%
TTTGCCTCTGCGAACTACGT+AGG + tig0039277:11037-11056 Msa1457890:intron 50.0%
CAGGGAAAACAGTACAGACG+TGG - tig0039277:11261-11280 None:intergenic 50.0%
! GTCTGTACTGTTTTCCCTGC+TGG + tig0039277:11262-11281 Msa1457890:three_prime_UTR 50.0%
AACACCTCCTATTGAGGGTC+GGG - tig0039277:11312-11331 None:intergenic 50.0%
CAACACCTCCTATTGAGGGT+CGG - tig0039277:11313-11332 None:intergenic 50.0%
AACTGCACCACATACACGCG+CGG - tig0039277:7071-7090 None:intergenic 55.0%
CGTCGTGGATGGAATCGGTA+TGG - tig0039277:7411-7430 None:intergenic 55.0%
GAATGTAAGAACGGCCGTCG+TGG - tig0039277:7426-7445 None:intergenic 55.0%
GGGAGCTTGTAAGCAAGGAG+AGG + tig0039277:8432-8451 Msa1457890:CDS 55.0%
AGCTTGTGACCCCAAGCTCA+AGG + tig0039277:8594-8613 Msa1457890:CDS 55.0%
!! GCGCTGGCTTATGTTTGCCT+TGG + tig0039277:8709-8728 Msa1457890:CDS 55.0%
GGCCCGGTACCTAAATGCAA+AGG - tig0039277:9668-9687 None:intergenic 55.0%
GGGTGTATGTGTCCCAGCTA+AGG + tig0039277:9825-9844 Msa1457890:intron 55.0%
CGTACCTACGTAGTTCGCAG+AGG - tig0039277:11044-11063 None:intergenic 55.0%
ACACCTCCTATTGAGGGTCG+GGG - tig0039277:11311-11330 None:intergenic 55.0%
GCTAGATCCGCGCGTGTATG+TGG + tig0039277:7061-7080 Msa1457890:five_prime_UTR 60.0%
CTTCTCTCCGGTGGCAGTGA+AGG + tig0039277:7358-7377 Msa1457890:CDS 60.0%
ATGGGAAGCGGTGGAGATGG+AGG - tig0039277:7392-7411 None:intergenic 60.0%
GGTATGGGAAGCGGTGGAGA+TGG - tig0039277:7395-7414 None:intergenic 60.0%
GGAATCGGTATGGGAAGCGG+TGG - tig0039277:7401-7420 None:intergenic 60.0%
ACGGCCGTCGTGGATGGAAT+CGG - tig0039277:7416-7435 None:intergenic 60.0%
GTAAGAACGGCCGTCGTGGA+TGG - tig0039277:7422-7441 None:intergenic 60.0%
! GGTGTTGTGCGACCCACTCT+TGG + tig0039277:8967-8986 Msa1457890:CDS 60.0%
GTTGTGCGACCCACTCTTGG+CGG + tig0039277:8970-8989 Msa1457890:CDS 60.0%
!! ATGAGCGCTGGCAGAGTGCT+TGG + tig0039277:10686-10705 Msa1457890:CDS 60.0%
CGTCTTCCCCGACCCTCAAT+AGG + tig0039277:11302-11321 Msa1457890:three_prime_UTR 60.0%
CTTCCCCGACCCTCAATAGG+AGG + tig0039277:11305-11324 Msa1457890:three_prime_UTR 60.0%
GGCGATGCCTTCACTGCCAC+CGG - tig0039277:7368-7387 None:intergenic 65.0%
GGAAGCGGTGGAGATGGAGG+CGG - tig0039277:7389-7408 None:intergenic 65.0%
AAATCTGCAGCCAGGGCGCG+TGG + tig0039277:8298-8317 Msa1457890:CDS 65.0%
TGGCACGGTACCACGCGCCC+TGG - tig0039277:8311-8330 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0039277 gene 7041 11546 7041 ID=Msa1457890;Name=Msa1457890
tig0039277 mRNA 7041 11546 7041 ID=Msa1457890-mRNA-1;Parent=Msa1457890;Name=Msa1457890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|1|1|5|310|515
tig0039277 exon 7041 7446 7041 ID=Msa1457890-mRNA-1:exon:21450;Parent=Msa1457890-mRNA-1
tig0039277 exon 8270 9191 8270 ID=Msa1457890-mRNA-1:exon:21451;Parent=Msa1457890-mRNA-1
tig0039277 exon 9347 9442 9347 ID=Msa1457890-mRNA-1:exon:21452;Parent=Msa1457890-mRNA-1
tig0039277 exon 10658 10794 10658 ID=Msa1457890-mRNA-1:exon:21453;Parent=Msa1457890-mRNA-1
tig0039277 exon 11059 11546 11059 ID=Msa1457890-mRNA-1:exon:21454;Parent=Msa1457890-mRNA-1
tig0039277 five_prime_UTR 7041 7231 7041 ID=Msa1457890-mRNA-1:five_prime_utr;Parent=Msa1457890-mRNA-1
tig0039277 CDS 7232 7446 7232 ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1
tig0039277 CDS 8270 9191 8270 ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1
tig0039277 CDS 9347 9442 9347 ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1
tig0039277 CDS 10658 10794 10658 ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1
tig0039277 CDS 11059 11236 11059 ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1
tig0039277 three_prime_UTR 11237 11546 11237 ID=Msa1457890-mRNA-1:three_prime_utr;Parent=Msa1457890-mRNA-1
Gene Sequence

>Msa1457890

ATGTTGTTCGCGTCTTCTTCACTCCTTCTCCTCCTCCTCCTATATTTATTTTCATTTCTATTTACCTCATTTGCATCCATCCACATCTACAATCGCGAACCTTTTCAAGATGTCGGCAATGCTTTTCTTCTCTCCGGTGGCAGTGAAGGCATCGCCGCCTCCATCTCCACCGCTTCCCATACCGATTCCATCCACGACGGCCGTTCTTACATTCGGTTTGAAAATATAACCATTAGGAGAAGAAAATCTGCAGCCAGGGCGCGTGGTACCGTGCCAATGCACATTATAATTTTTGAGGCTGCTGATCGTGATGATATAGGCGGTTCTGTTTATGGAGGACAACGAGCAATATGTTGCACCTCTGATTTAGCGAAGATGGGAGCTTGTAAGCAAGGAGAGGTTATCAGGAGACCTTCTGCAACTGACACTAATTGGCCAGTCATTATAGATCTATATTTCAAGGGGAAATCCCGAATTATCAGTTTAGATTCTAAGGAAGTTTCTATCACAAAGACTGGAATGTATAATTTGTTTTTTGTAGCTTGTGACCCCAAGCTCAAGGATATCGTGATGAGCGGGAAGACAATCTGGAAAAACCCTGATGGGTTTTTACCCGGTAGAATGGCCCCATTAAAGAAGTTCTATGTATTTATGGCGCTGGCTTATGTTTGCCTTGGCATTGTTTGGCTCCTTCAGTATGTGAGGTTTTGGGATGATGTATTGCTACTTCAGCACTGTATCTCAGCTGTTATTGGTCTTGGATTGTTTGAGATGATTCTCTGGTATTTTGAGTATGCCCATTTCAACAATACTGGAATCAGACCTATTATTGTCACAACATGGGTTGTCACTGTTGGGGCAATAAGAAAAACAATAGCACGGCTTCTCATTCTCTCTGTTTCCATGGGTTATGGTGTTGTGCGACCCACTCTTGGCGGTCTTACATCAAAGGTCCTTTTACTTGGAGTAACTTACTTTCTTGCATCAGAGTTGCTGAATATAACTGAATACGTGGGGACCATTAATGATGTATCTGGAAGGGCAAGGCTCTTTCTAGTTCTTCCTGATGCTTTCTTGGACGCATTTTTGATTTTATGGATTTTTACTTCTCTGTCAAAAACACTAGAACAGTTACAGGCAAAACGGAGTTCTGTTAAATTGGATATATACAGGAAATTCTCAAATGCACTAGTAGTAACGGTTACCTCTTCAGTTGTCTGGATAGGTTATGAGGTTTACTTCAAAGCAACAGATCCATTTAATGAGCGCTGGCAGAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCACTACTCTGTGTTATATGTTATCTCTGGGCGCCTTCCCAAAGTTCTCAAAGGTACGCATACTCAGAGAAAGTGGGAGAAGAATCTGATGACGAAGAAGCCATGTCTCTAACTAAGGGAAAGCAAGAAGGACAAGGAGAAATAAGTTTAGTCAGGCAAGAGAAAAATGGCCAAACTGATGCATCTTCTGATGATGAAGATGACGAGTCAGAAGAGGATAAAAGGGAATAA

Protein sequence

>Msa1457890

MLFASSSLLLLLLLYLFSFLFTSFASIHIYNREPFQDVGNAFLLSGGSEGIAASISTASHTDSIHDGRSYIRFENITIRRRKSAARARGTVPMHIIIFEAADRDDIGGSVYGGQRAICCTSDLAKMGACKQGEVIRRPSATDTNWPVIIDLYFKGKSRIISLDSKEVSITKTGMYNLFFVACDPKLKDIVMSGKTIWKNPDGFLPGRMAPLKKFYVFMALAYVCLGIVWLLQYVRFWDDVLLLQHCISAVIGLGLFEMILWYFEYAHFNNTGIRPIIVTTWVVTVGAIRKTIARLLILSVSMGYGVVRPTLGGLTSKVLLLGVTYFLASELLNITEYVGTINDVSGRARLFLVLPDAFLDAFLILWIFTSLSKTLEQLQAKRSSVKLDIYRKFSNALVVTVTSSVVWIGYEVYFKATDPFNERWQSAWIITAFWDILAFALLCVICYLWAPSQSSQRYAYSEKVGEESDDEEAMSLTKGKQEGQGEISLVRQEKNGQTDASSDDEDDESEEDKRE*