Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457890 | XP_003593093.1 | 97.864 | 515 | 9 | 1 | 1 | 515 | 1 | 513 | 0.0 | 1028 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457890 | sp|Q28EW0|TM87A_XENTR | 32.484 | 314 | 200 | 6 | 198 | 506 | 197 | 503 | 8.48e-51 | 185 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457890 | A2Q492 | 97.864 | 515 | 9 | 1 | 1 | 515 | 1 | 513 | 0.0 | 1028 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0002420 | Msa1457890 | 0.821905 | 3.148419e-53 | -8.615850e-47 |
Msa0040790 | Msa1457890 | 0.814385 | 1.582934e-51 | -8.615850e-47 |
Msa1381260 | Msa1457890 | 0.809001 | 2.347817e-50 | -8.615850e-47 |
Msa1412000 | Msa1457890 | 0.816030 | 6.822893e-52 | -8.615850e-47 |
Msa1427110 | Msa1457890 | 0.801837 | 7.457361e-49 | -8.615850e-47 |
Msa0610690 | Msa1457890 | 0.806280 | 8.879669e-50 | -8.615850e-47 |
Msa0630440 | Msa1457890 | 0.817643 | 2.964464e-52 | -8.615850e-47 |
Msa0652770 | Msa1457890 | 0.814893 | 1.221892e-51 | -8.615850e-47 |
Msa0703950 | Msa1457890 | 0.840826 | 6.881964e-58 | -8.615850e-47 |
Msa0707360 | Msa1457890 | 0.801337 | 9.443033e-49 | -8.615850e-47 |
Msa0726170 | Msa1457890 | -0.821298 | 4.348949e-53 | -8.615850e-47 |
Msa0751870 | Msa1457890 | 0.807040 | 6.138896e-50 | -8.615850e-47 |
Msa0765960 | Msa1457890 | -0.800025 | 1.749140e-48 | -8.615850e-47 |
Msa0795750 | Msa1457890 | 0.801246 | 9.855402e-49 | -8.615850e-47 |
Msa0811690 | Msa1457890 | 0.808413 | 3.135487e-50 | -8.615850e-47 |
Msa0124910 | Msa1457890 | 0.808305 | 3.305749e-50 | -8.615850e-47 |
Msa0169410 | Msa1457890 | 0.824196 | 9.202670e-54 | -8.615850e-47 |
Msa0184500 | Msa1457890 | 0.816503 | 5.346789e-52 | -8.615850e-47 |
Msa0189270 | Msa1457890 | 0.960836 | 5.212552e-119 | -8.615850e-47 |
Msa0209140 | Msa1457890 | 0.812139 | 4.925877e-51 | -8.615850e-47 |
Msa0231630 | Msa1457890 | 0.831331 | 1.773574e-55 | -8.615850e-47 |
Msa1257440 | Msa1457890 | 0.828723 | 7.673375e-55 | -8.615850e-47 |
Msa1305250 | Msa1457890 | 0.817599 | 3.033088e-52 | -8.615850e-47 |
Msa0424160 | Msa1457890 | 0.800704 | 1.272096e-48 | -8.615850e-47 |
Msa0249850 | Msa1457890 | 0.809662 | 1.693717e-50 | -8.615850e-47 |
Msa0276860 | Msa1457890 | 0.815966 | 7.051929e-52 | -8.615850e-47 |
Msa0281470 | Msa1457890 | 0.811384 | 7.193503e-51 | -8.615850e-47 |
Msa0309720 | Msa1457890 | 0.900879 | 4.705211e-78 | -8.615850e-47 |
Msa0326710 | Msa1457890 | 0.804221 | 2.397563e-49 | -8.615850e-47 |
Msa1145300 | Msa1457890 | 0.807010 | 6.228158e-50 | -8.615850e-47 |
Msa1207190 | Msa1457890 | 0.818847 | 1.582803e-52 | -8.615850e-47 |
Msa0519840 | Msa1457890 | 0.804112 | 2.526109e-49 | -8.615850e-47 |
Msa0579080 | Msa1457890 | 0.820045 | 8.439471e-53 | -8.615850e-47 |
Msa0579160 | Msa1457890 | 0.818940 | 1.507467e-52 | -8.615850e-47 |
Msa0579220 | Msa1457890 | 0.829069 | 6.326119e-55 | -8.615850e-47 |
Msa0851850 | Msa1457890 | 0.858361 | 8.683181e-63 | -8.615850e-47 |
Msa0945190 | Msa1457890 | 0.809032 | 2.311657e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457890 | MtrunA17_Chr2g0278311 | 97.864 | 515 | 9 | 1 | 1 | 515 | 1 | 513 | 0.0 | 1028 |
Msa1457890 | MtrunA17_Chr8g0344451 | 55.172 | 493 | 212 | 5 | 25 | 515 | 20 | 505 | 0.0 | 558 |
Msa1457890 | MtrunA17_Chr5g0428321 | 52.115 | 520 | 233 | 6 | 10 | 515 | 24 | 541 | 0.0 | 533 |
Msa1457890 | MtrunA17_Chr8g0334581 | 42.262 | 504 | 238 | 9 | 25 | 515 | 28 | 491 | 1.66e-132 | 393 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1457890 | AT2G01070.1 | 64.427 | 506 | 158 | 6 | 11 | 515 | 12 | 496 | 0.0 | 664 |
Msa1457890 | AT2G01070.2 | 64.602 | 452 | 147 | 2 | 11 | 461 | 12 | 451 | 0.0 | 615 |
Msa1457890 | AT1G72480.1 | 53.737 | 495 | 221 | 4 | 25 | 515 | 19 | 509 | 0.0 | 550 |
Msa1457890 | AT1G61670.1 | 47.070 | 512 | 251 | 6 | 13 | 515 | 13 | 513 | 1.00e-157 | 459 |
Msa1457890 | AT1G61670.2 | 47.070 | 512 | 251 | 6 | 13 | 515 | 13 | 513 | 1.00e-157 | 459 |
Msa1457890 | AT1G10980.1 | 36.765 | 476 | 277 | 9 | 25 | 482 | 25 | 494 | 1.68e-101 | 315 |
Find 154 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGAAGTTCTATGTATTTA+TGG | 0.124995 | tig0039277:+8687 | Msa1457890:CDS |
GATATAGGCGGTTCTGTTTA+TGG | 0.176908 | tig0039277:+8367 | Msa1457890:CDS |
TCCTTCAGTATGTGAGGTTT+TGG | 0.183086 | tig0039277:+8743 | Msa1457890:CDS |
AATACATAGAACTTCTTTAA+TGG | 0.194510 | tig0039277:-8682 | None:intergenic |
AGTTCTTCCTGATGCTTTCT+TGG | 0.210058 | tig0039277:+9110 | Msa1457890:CDS |
TACATGATATAAAACCATTT+TGG | 0.214692 | tig0039277:-11390 | None:intergenic |
CTCTGCCAGCGCTCATTAAA+TGG | 0.223361 | tig0039277:-10679 | None:intergenic |
CTCTCTGTTTCCATGGGTTA+TGG | 0.230696 | tig0039277:+8946 | Msa1457890:CDS |
CTTGGATCATCACTGCATTC+TGG | 0.238611 | tig0039277:+10704 | Msa1457890:CDS |
ATCTCAGCTGTTATTGGTCT+TGG | 0.253254 | tig0039277:+8793 | Msa1457890:CDS |
CCTTCCAGATACATCATTAA+TGG | 0.253854 | tig0039277:-9073 | None:intergenic |
ACGAGTCAGAAGAGGATAAA+AGG | 0.254497 | tig0039277:+11208 | Msa1457890:CDS |
TCACATTCTTTGTTCCAAAA+TGG | 0.256294 | tig0039277:+11376 | Msa1457890:three_prime_UTR |
AAAACGGAGTTCTGTTAAAT+TGG | 0.268399 | tig0039277:+9349 | Msa1457890:CDS |
TAGAATCTAAACTGATAATT+CGG | 0.281464 | tig0039277:-8525 | None:intergenic |
AATTATCAGTTTAGATTCTA+AGG | 0.283013 | tig0039277:+8528 | Msa1457890:CDS |
ATACATAGAACTTCTTTAAT+GGG | 0.287896 | tig0039277:-8681 | None:intergenic |
CTTCTGCAACTGACACTAAT+TGG | 0.289421 | tig0039277:+8467 | Msa1457890:CDS |
CGTTGCAACTTCACTCTCTT+TGG | 0.292013 | tig0039277:-7113 | None:intergenic |
TGATCTTGTTAATGCTGAAT+TGG | 0.298739 | tig0039277:-7191 | None:intergenic |
TCTGTGTTATATGTTATCTC+TGG | 0.300146 | tig0039277:+10749 | Msa1457890:CDS |
CTCTCTTTGGCAGATGAGAT+TGG | 0.306309 | tig0039277:-7100 | None:intergenic |
CACTGTATCTCAGCTGTTAT+TGG | 0.316682 | tig0039277:+8787 | Msa1457890:CDS |
AGTAAGTTACTCCAAGTAAA+AGG | 0.317856 | tig0039277:-9008 | None:intergenic |
GTAAGCAAGGAGAGGTTATC+AGG | 0.319461 | tig0039277:+8440 | Msa1457890:CDS |
CAATGCACCTTTGAGAACTT+TGG | 0.323697 | tig0039277:-10780 | None:intergenic |
TGATTCCAGTATTGTTGAAA+TGG | 0.337002 | tig0039277:-8852 | None:intergenic |
ATGTTTGCCTTGGCATTGTT+TGG | 0.340723 | tig0039277:+8719 | Msa1457890:CDS |
TCTCATTCTCTCTGTTTCCA+TGG | 0.341282 | tig0039277:+8939 | Msa1457890:CDS |
AGAATCTAAACTGATAATTC+GGG | 0.352560 | tig0039277:-8524 | None:intergenic |
ATCACGATATCCTTGAGCTT+GGG | 0.360174 | tig0039277:-8604 | None:intergenic |
ACCCATGTTGTGACAATAAT+AGG | 0.360700 | tig0039277:-8877 | None:intergenic |
CAACATGGGTTGTCACTGTT+GGG | 0.376037 | tig0039277:+8890 | Msa1457890:CDS |
CACCTCTGATTTAGCGAAGA+TGG | 0.379472 | tig0039277:+8411 | Msa1457890:CDS |
CTCATTCTCTCTGTTTCCAT+GGG | 0.383587 | tig0039277:+8940 | Msa1457890:CDS |
CGGTTACCTCTTCAGTTGTC+TGG | 0.383647 | tig0039277:+9408 | Msa1457890:CDS |
AGAAGCCATGTCTCTAACTA+AGG | 0.392626 | tig0039277:+11101 | Msa1457890:CDS |
TGATGAGCGGGAAGACAATC+TGG | 0.393173 | tig0039277:+8623 | Msa1457890:CDS |
CGTCTTCCCCGACCCTCAAT+AGG | 0.393505 | tig0039277:+11302 | Msa1457890:three_prime_UTR |
TATGCCCATTTCAACAATAC+TGG | 0.400524 | tig0039277:+8847 | Msa1457890:CDS |
GGGACCATTAATGATGTATC+TGG | 0.401387 | tig0039277:+9069 | Msa1457890:CDS |
GATTGTTTGAGATGATTCTC+TGG | 0.401399 | tig0039277:+8815 | Msa1457890:CDS |
AATGCACCTTTGAGAACTTT+GGG | 0.404433 | tig0039277:-10779 | None:intergenic |
TTGGATCATCACTGCATTCT+GGG | 0.410672 | tig0039277:+10705 | Msa1457890:CDS |
CTTTAATGGGGCCATTCTAC+CGG | 0.417526 | tig0039277:-8668 | None:intergenic |
CTGTTAAATTGGATATATAC+AGG | 0.420090 | tig0039277:+9360 | Msa1457890:CDS |
GGTTTGAAAATATAACCATT+AGG | 0.433202 | tig0039277:+8269 | Msa1457890:intron |
AACACCTCCTATTGAGGGTC+GGG | 0.433247 | tig0039277:-11309 | None:intergenic |
GCGCTGGCTTATGTTTGCCT+TGG | 0.439178 | tig0039277:+8709 | Msa1457890:CDS |
CTTCTCTCCGGTGGCAGTGA+AGG | 0.450618 | tig0039277:+7358 | Msa1457890:CDS |
GAAGTTTCTATCACAAAGAC+TGG | 0.455857 | tig0039277:+8550 | Msa1457890:CDS |
AATATAGGAGGAGGAGGAGA+AGG | 0.456966 | tig0039277:-7255 | None:intergenic |
ATAGAAATGAAAATAAATAT+AGG | 0.457478 | tig0039277:-7270 | None:intergenic |
ATGAGCGCTGGCAGAGTGCT+TGG | 0.457803 | tig0039277:+10686 | Msa1457890:CDS |
CATCAGAAGATGCATCAGTT+TGG | 0.459499 | tig0039277:-11176 | None:intergenic |
GATTCCAGTATTGTTGAAAT+GGG | 0.459867 | tig0039277:-8851 | None:intergenic |
GCTGCTGATCGTGATGATAT+AGG | 0.468825 | tig0039277:+8352 | Msa1457890:CDS |
AAGGAGAAATAAGTTTAGTC+AGG | 0.470161 | tig0039277:+11139 | Msa1457890:CDS |
CGAGTCAGAAGAGGATAAAA+GGG | 0.471974 | tig0039277:+11209 | Msa1457890:CDS |
AGTTGTCTGGATAGGTTATG+AGG | 0.475557 | tig0039277:+9421 | Msa1457890:CDS |
AAAATAAATATAGGAGGAGG+AGG | 0.478489 | tig0039277:-7261 | None:intergenic |
CATTATAGATCTATATTTCA+AGG | 0.482028 | tig0039277:+8495 | Msa1457890:CDS |
ACCTCTTCAGTTGTCTGGAT+AGG | 0.482984 | tig0039277:+9413 | Msa1457890:CDS |
GTAAGAACGGCCGTCGTGGA+TGG | 0.486797 | tig0039277:-7419 | None:intergenic |
GGTGTTGTGCGACCCACTCT+TGG | 0.487087 | tig0039277:+8967 | Msa1457890:CDS |
CGTCGTGGATGGAATCGGTA+TGG | 0.488362 | tig0039277:-7408 | None:intergenic |
CTGTGTTATATGTTATCTCT+GGG | 0.488675 | tig0039277:+10750 | Msa1457890:CDS |
TTTACAACACCTCCTATTGA+GGG | 0.489243 | tig0039277:-11314 | None:intergenic |
ACCTCTGATTTAGCGAAGAT+GGG | 0.491939 | tig0039277:+8412 | Msa1457890:CDS |
TGGCACGGTACCACGCGCCC+TGG | 0.493484 | tig0039277:-8308 | None:intergenic |
AATGCGTCCAAGAAAGCATC+AGG | 0.493522 | tig0039277:-9117 | None:intergenic |
CATCACGATATCCTTGAGCT+TGG | 0.496078 | tig0039277:-8605 | None:intergenic |
GGTATGGGAAGCGGTGGAGA+TGG | 0.496727 | tig0039277:-7392 | None:intergenic |
ATCTTCCTTGTCAGGCAAAA+CGG | 0.497564 | tig0039277:+9333 | Msa1457890:intron |
ACAACATGGGTTGTCACTGT+TGG | 0.499602 | tig0039277:+8889 | Msa1457890:CDS |
GATGGAATCGGTATGGGAAG+CGG | 0.507575 | tig0039277:-7401 | None:intergenic |
ACGACGGCCGTTCTTACATT+CGG | 0.509858 | tig0039277:+7425 | Msa1457890:CDS |
GCTAGATCCGCGCGTGTATG+TGG | 0.518173 | tig0039277:+7061 | Msa1457890:five_prime_UTR |
CTTTCCCTTAGTTAGAGACA+TGG | 0.519744 | tig0039277:-11106 | None:intergenic |
GGAGAAGAAAATCTGCAGCC+AGG | 0.520643 | tig0039277:+8290 | Msa1457890:CDS |
AAATATAGATCTATAATGAC+TGG | 0.523698 | tig0039277:-8490 | None:intergenic |
GTTCTATGTATTTATGGCGC+TGG | 0.529730 | tig0039277:+8693 | Msa1457890:CDS |
CACTTAATTCAATAGTCAGT+GGG | 0.530389 | tig0039277:-11493 | None:intergenic |
ATGAAAATAAATATAGGAGG+AGG | 0.531020 | tig0039277:-7264 | None:intergenic |
ACGGCCGTCGTGGATGGAAT+CGG | 0.533314 | tig0039277:-7413 | None:intergenic |
GGCGATGCCTTCACTGCCAC+CGG | 0.538309 | tig0039277:-7365 | None:intergenic |
TTTAATGGGGCCATTCTACC+GGG | 0.539654 | tig0039277:-8667 | None:intergenic |
CACCTTTGAGAACTTTGGGA+AGG | 0.540818 | tig0039277:-10775 | None:intergenic |
TTGAGACTTGAAAACCCAGC+AGG | 0.541326 | tig0039277:-11277 | None:intergenic |
GTGGGATTTCCTAGTATGCA+AGG | 0.542253 | tig0039277:-11475 | None:intergenic |
ATTATAGATCTATATTTCAA+GGG | 0.543479 | tig0039277:+8496 | Msa1457890:CDS |
CAGATCCATTTAATGAGCGC+TGG | 0.543799 | tig0039277:+10674 | Msa1457890:CDS |
GCATTGCCGACATCTTGAAA+AGG | 0.544373 | tig0039277:-7331 | None:intergenic |
TCACGATATCCTTGAGCTTG+GGG | 0.544856 | tig0039277:-8603 | None:intergenic |
CTCAAGGATATCGTGATGAG+CGG | 0.547215 | tig0039277:+8610 | Msa1457890:CDS |
ATGGGAAGCGGTGGAGATGG+AGG | 0.547800 | tig0039277:-7389 | None:intergenic |
GTCGTGGATGGAATCGGTAT+GGG | 0.564130 | tig0039277:-7407 | None:intergenic |
TTTGGCTCCTTCAGTATGTG+AGG | 0.564366 | tig0039277:+8737 | Msa1457890:CDS |
GATGTAAGACCGCCAAGAGT+GGG | 0.569323 | tig0039277:-8979 | None:intergenic |
CTCAAATGCACTAGTAGTAA+CGG | 0.569649 | tig0039277:+9388 | Msa1457890:CDS |
TCAAGGATATCGTGATGAGC+GGG | 0.571538 | tig0039277:+8611 | Msa1457890:CDS |
GAAGCCATGTCTCTAACTAA+GGG | 0.572177 | tig0039277:+11102 | Msa1457890:CDS |
CTAACTAAGGGAAAGCAAGA+AGG | 0.572370 | tig0039277:+11114 | Msa1457890:CDS |
GGAAGCGGTGGAGATGGAGG+CGG | 0.573916 | tig0039277:-7386 | None:intergenic |
CGCCTTCCCAAAGTTCTCAA+AGG | 0.574890 | tig0039277:+10773 | Msa1457890:CDS |
GACCTATTATTGTCACAACA+TGG | 0.575906 | tig0039277:+8875 | Msa1457890:CDS |
CAACACCTCCTATTGAGGGT+CGG | 0.576156 | tig0039277:-11310 | None:intergenic |
AAGATGGGAGCTTGTAAGCA+AGG | 0.577447 | tig0039277:+8427 | Msa1457890:CDS |
TGATGTAAGACCGCCAAGAG+TGG | 0.580462 | tig0039277:-8980 | None:intergenic |
AATTATAATGTGCATTGGCA+CGG | 0.581245 | tig0039277:-8323 | None:intergenic |
TACATAGAACTTCTTTAATG+GGG | 0.583432 | tig0039277:-8680 | None:intergenic |
CTTCCCCGACCCTCAATAGG+AGG | 0.586533 | tig0039277:+11305 | Msa1457890:three_prime_UTR |
GAGAAGAAAATCTGCAGCCA+GGG | 0.587661 | tig0039277:+8291 | Msa1457890:CDS |
AAATCTGCAGCCAGGGCGCG+TGG | 0.589551 | tig0039277:+8298 | Msa1457890:CDS |
ACCTATCCAGACAACTGAAG+AGG | 0.593355 | tig0039277:-9414 | None:intergenic |
GAAATGAAAATAAATATAGG+AGG | 0.595974 | tig0039277:-7267 | None:intergenic |
GAATGTAAGAACGGCCGTCG+TGG | 0.596570 | tig0039277:-7423 | None:intergenic |
TCTTGGCGGTCTTACATCAA+AGG | 0.598039 | tig0039277:+8984 | Msa1457890:CDS |
ACCTATTATTGTCACAACAT+GGG | 0.599977 | tig0039277:+8876 | Msa1457890:CDS |
AGCTTGTGACCCCAAGCTCA+AGG | 0.601127 | tig0039277:+8594 | Msa1457890:CDS |
CAATTAGTGTCAGTTGCAGA+AGG | 0.601312 | tig0039277:-8466 | None:intergenic |
CCATTAATGATGTATCTGGA+AGG | 0.601632 | tig0039277:+9073 | Msa1457890:CDS |
GTTGTGCGACCCACTCTTGG+CGG | 0.604378 | tig0039277:+8970 | Msa1457890:CDS |
TCGCACAACACCATAACCCA+TGG | 0.605397 | tig0039277:-8956 | None:intergenic |
GTACGCATACTCAGAGAAAG+TGG | 0.606384 | tig0039277:+11059 | Msa1457890:CDS |
GATGTGGATGGATGCAAATG+AGG | 0.606399 | tig0039277:-7296 | None:intergenic |
GGAATCGGTATGGGAAGCGG+TGG | 0.607092 | tig0039277:-7398 | None:intergenic |
AAGGGAAAGCAAGAAGGACA+AGG | 0.611902 | tig0039277:+11120 | Msa1457890:CDS |
CTGAATATAACTGAATACGT+GGG | 0.613072 | tig0039277:+9048 | Msa1457890:CDS |
CATTAATGATGTATCTGGAA+GGG | 0.613255 | tig0039277:+9074 | Msa1457890:CDS |
TGAAGATGACGAGTCAGAAG+AGG | 0.617368 | tig0039277:+11200 | Msa1457890:CDS |
CCCAAAACCTCACATACTGA+AGG | 0.620914 | tig0039277:-8744 | None:intergenic |
TGAAGAAGACGCGAACAACA+TGG | 0.620952 | tig0039277:-7230 | None:intergenic |
TTATAGATCTATATTTCAAG+GGG | 0.621028 | tig0039277:+8497 | Msa1457890:CDS |
AACATGGGTTGTCACTGTTG+GGG | 0.621382 | tig0039277:+8891 | Msa1457890:CDS |
TCCCATCTTCGCTAAATCAG+AGG | 0.621725 | tig0039277:-8413 | None:intergenic |
AAGGTTCGCGATTGTAGATG+TGG | 0.624736 | tig0039277:-7312 | None:intergenic |
ACACTTAATTCAATAGTCAG+TGG | 0.627581 | tig0039277:-11494 | None:intergenic |
ACACCTCCTATTGAGGGTCG+GGG | 0.627766 | tig0039277:-11308 | None:intergenic |
TTCGCGATTGTAGATGTGGA+TGG | 0.634523 | tig0039277:-7308 | None:intergenic |
GGGAGCTTGTAAGCAAGGAG+AGG | 0.639731 | tig0039277:+8432 | Msa1457890:CDS |
GAAGGAGCCAAACAATGCCA+AGG | 0.641996 | tig0039277:-8726 | None:intergenic |
TGGGATTTCCTAGTATGCAA+GGG | 0.654291 | tig0039277:-11474 | None:intergenic |
AGCATTACCGAATGTAAGAA+CGG | 0.655590 | tig0039277:-7432 | None:intergenic |
AACTGCACCACATACACGCG+CGG | 0.660131 | tig0039277:-7068 | None:intergenic |
TGAGACTTGAAAACCCAGCA+GGG | 0.660881 | tig0039277:-11276 | None:intergenic |
GCTGAATATAACTGAATACG+TGG | 0.662152 | tig0039277:+9047 | Msa1457890:CDS |
TACGCATACTCAGAGAAAGT+GGG | 0.662515 | tig0039277:+11060 | Msa1457890:CDS |
CAGGGAAAACAGTACAGACG+TGG | 0.678840 | tig0039277:-11258 | None:intergenic |
ATAGGCGGTTCTGTTTATGG+AGG | 0.681454 | tig0039277:+8370 | Msa1457890:CDS |
ATGATGTATCTGGAAGGGCA+AGG | 0.685625 | tig0039277:+9079 | Msa1457890:CDS |
TGAATATAACTGAATACGTG+GGG | 0.689783 | tig0039277:+9049 | Msa1457890:CDS |
GCTGATCGTGATGATATAGG+CGG | 0.712191 | tig0039277:+8355 | Msa1457890:CDS |
CATACCGATTCCATCCACGA+CGG | 0.807287 | tig0039277:+7409 | Msa1457890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAGAAATGAAAATAAATAT+AGG | - | tig0039277:7273-7292 | None:intergenic | 10.0% |
!! | AATATTGTTAATTATATGTT+AGG | + | tig0039277:8059-8078 | Msa1457890:intron | 10.0% |
!! | ATATTGTTAATTATATGTTA+GGG | + | tig0039277:8060-8079 | Msa1457890:intron | 10.0% |
!!! | CAAATTGATTTTGAAATATT+TGG | + | tig0039277:7630-7649 | Msa1457890:intron | 15.0% |
!! | TATTGTTAATTATATGTTAG+GGG | + | tig0039277:8061-8080 | Msa1457890:intron | 15.0% |
!! | ATTATAGATCTATATTTCAA+GGG | + | tig0039277:8496-8515 | Msa1457890:CDS | 15.0% |
!!! | ATTGGACTTTTTTTTTTTTT+GGG | - | tig0039277:9590-9609 | None:intergenic | 15.0% |
!!! | TAGTATTTATTATTTTTTCC+TGG | + | tig0039277:10015-10034 | Msa1457890:intron | 15.0% |
!!! | AGTATTTATTATTTTTTCCT+GGG | + | tig0039277:10016-10035 | Msa1457890:intron | 15.0% |
!! | GTAAAATAAAATTGATCAAA+TGG | + | tig0039277:10398-10417 | Msa1457890:intron | 15.0% |
!! | GAAATGAAAATAAATATAGG+AGG | - | tig0039277:7270-7289 | None:intergenic | 20.0% |
!! | TTAGGAATTGTATAATTTGA+TGG | + | tig0039277:7528-7547 | Msa1457890:intron | 20.0% |
!! | ACAAAAAAAAAAACAGGTAA+TGG | - | tig0039277:7917-7936 | None:intergenic | 20.0% |
!! | GAAATGTAAAAAATTGCATA+TGG | + | tig0039277:8009-8028 | Msa1457890:intron | 20.0% |
!! | TCATTGTATATGGATTTATA+TGG | + | tig0039277:8168-8187 | Msa1457890:intron | 20.0% |
!! | TCAAAAATTATAATGTGCAT+TGG | - | tig0039277:8331-8350 | None:intergenic | 20.0% |
!!! | AATGCACATTATAATTTTTG+AGG | + | tig0039277:8330-8349 | Msa1457890:CDS | 20.0% |
!! | AAATATAGATCTATAATGAC+TGG | - | tig0039277:8493-8512 | None:intergenic | 20.0% |
!! | CATTATAGATCTATATTTCA+AGG | + | tig0039277:8495-8514 | Msa1457890:CDS | 20.0% |
!! | TTATAGATCTATATTTCAAG+GGG | + | tig0039277:8497-8516 | Msa1457890:CDS | 20.0% |
!! | TAGAATCTAAACTGATAATT+CGG | - | tig0039277:8528-8547 | None:intergenic | 20.0% |
!! | AATTATCAGTTTAGATTCTA+AGG | + | tig0039277:8528-8547 | Msa1457890:CDS | 20.0% |
!! | ATACATAGAACTTCTTTAAT+GGG | - | tig0039277:8684-8703 | None:intergenic | 20.0% |
!! | AATACATAGAACTTCTTTAA+TGG | - | tig0039277:8685-8704 | None:intergenic | 20.0% |
!! | AAAGAAGTTCTATGTATTTA+TGG | + | tig0039277:8687-8706 | Msa1457890:CDS | 20.0% |
!!! | TTATTTTGTGCAATATAACA+TGG | + | tig0039277:9465-9484 | Msa1457890:intron | 20.0% |
!!! | GATTGGACTTTTTTTTTTTT+TGG | - | tig0039277:9591-9610 | None:intergenic | 20.0% |
!! | AAGAGAAAGTAAATTAAAGT+CGG | - | tig0039277:9614-9633 | None:intergenic | 20.0% |
!!! | AGAAATATTAACTTGTTGAA+TGG | + | tig0039277:9985-10004 | Msa1457890:intron | 20.0% |
!!! | GATTTTCTTATTATTTTCTC+AGG | - | tig0039277:10109-10128 | None:intergenic | 20.0% |
!!! | TGTTTTCTTGATATTTGATA+CGG | - | tig0039277:10230-10249 | None:intergenic | 20.0% |
!! | ACAAATTATTAATAGAGAAG+AGG | + | tig0039277:10247-10266 | Msa1457890:intron | 20.0% |
!! | CAAATTATTAATAGAGAAGA+GGG | + | tig0039277:10248-10267 | Msa1457890:intron | 20.0% |
!!! | ATTTAGTTTCCAATTTTTTG+AGG | - | tig0039277:10299-10318 | None:intergenic | 20.0% |
!!! | AAAATTTTGTTCATTTGTAC+TGG | + | tig0039277:11334-11353 | Msa1457890:three_prime_UTR | 20.0% |
!!! | TACATGATATAAAACCATTT+TGG | - | tig0039277:11393-11412 | None:intergenic | 20.0% |
! | ATGAAAATAAATATAGGAGG+AGG | - | tig0039277:7267-7286 | None:intergenic | 25.0% |
! | CAAGTTAGAATCAATTCTAA+AGG | - | tig0039277:7681-7700 | None:intergenic | 25.0% |
! | TCTAACTTGAAACTAGAATT+TGG | + | tig0039277:7692-7711 | Msa1457890:intron | 25.0% |
!!! | TGTTTGGATTTATTTTACCA+AGG | + | tig0039277:7851-7870 | Msa1457890:intron | 25.0% |
!!! | ATGGAGTTACATTTTTTTAG+TGG | + | tig0039277:8028-8047 | Msa1457890:intron | 25.0% |
!!! | AACATATAAGGTTGGTTTTA+TGG | - | tig0039277:8143-8162 | None:intergenic | 25.0% |
! | ACAATGAGATGTAACATATA+AGG | - | tig0039277:8155-8174 | None:intergenic | 25.0% |
! | ATGTTACATCTCATTGTATA+TGG | + | tig0039277:8158-8177 | Msa1457890:intron | 25.0% |
! | TGACATATCATTCAAATATG+AGG | - | tig0039277:8207-8226 | None:intergenic | 25.0% |
! | GGTTTGAAAATATAACCATT+AGG | + | tig0039277:8269-8288 | Msa1457890:intron | 25.0% |
! | AGAATCTAAACTGATAATTC+GGG | - | tig0039277:8527-8546 | None:intergenic | 25.0% |
! | TACATAGAACTTCTTTAATG+GGG | - | tig0039277:8683-8702 | None:intergenic | 25.0% |
! | CAATAAGAAAAACAATAGCA+CGG | + | tig0039277:8914-8933 | Msa1457890:CDS | 25.0% |
! | AACAGAAAAATTTAGAGGTA+GGG | - | tig0039277:9261-9280 | None:intergenic | 25.0% |
! | TAACAGAAAAATTTAGAGGT+AGG | - | tig0039277:9262-9281 | None:intergenic | 25.0% |
!! | ACCTCTAAATTTTTCTGTTA+TGG | + | tig0039277:9262-9281 | Msa1457890:intron | 25.0% |
! | TCCATAACAGAAAAATTTAG+AGG | - | tig0039277:9266-9285 | None:intergenic | 25.0% |
! | CAAACATATTTGAAAAAAGG+AGG | - | tig0039277:9300-9319 | None:intergenic | 25.0% |
!!! | CTCCTTTTTTCAAATATGTT+TGG | + | tig0039277:9298-9317 | Msa1457890:intron | 25.0% |
! | TGCCAAACATATTTGAAAAA+AGG | - | tig0039277:9303-9322 | None:intergenic | 25.0% |
! | CTGTTAAATTGGATATATAC+AGG | + | tig0039277:9360-9379 | Msa1457890:CDS | 25.0% |
! | ATTTCAGTTACTAATACAAG+AGG | - | tig0039277:9492-9511 | None:intergenic | 25.0% |
! | AGAGAAAGTAAATTAAAGTC+GGG | - | tig0039277:9613-9632 | None:intergenic | 25.0% |
! | AATAGGAAATATAAAGGAAC+AGG | - | tig0039277:9689-9708 | None:intergenic | 25.0% |
! | GTGAGAAATAGGAAATATAA+AGG | - | tig0039277:9695-9714 | None:intergenic | 25.0% |
! | ATAGAGTAATGTGATTTATC+TGG | + | tig0039277:9726-9745 | Msa1457890:intron | 25.0% |
! | AATGAGTGAAAATAACTTAC+AGG | + | tig0039277:9759-9778 | Msa1457890:intron | 25.0% |
! | TGTGAGAAAAAAAAACTAAG+AGG | + | tig0039277:10056-10075 | Msa1457890:intron | 25.0% |
!!! | ATAACAAGCCTTATTCTAAT+AGG | - | tig0039277:10199-10218 | None:intergenic | 25.0% |
! | GTAAAGTTAGCATATATTGA+TGG | - | tig0039277:10630-10649 | None:intergenic | 25.0% |
!!! | TATGCTAACTTTACTTTTAC+AGG | + | tig0039277:10636-10655 | Msa1457890:intron | 25.0% |
! | TTGAAATTTACAATGTTGTG+TGG | + | tig0039277:10882-10901 | Msa1457890:intron | 25.0% |
! | TGAAATTTACAATGTTGTGT+GGG | + | tig0039277:10883-10902 | Msa1457890:intron | 25.0% |
! | TAGTAAAGCCGTAAAAAAAA+GGG | + | tig0039277:10929-10948 | Msa1457890:intron | 25.0% |
!!! | GTTTTTTGCCCTTTTTTTTA+CGG | - | tig0039277:10940-10959 | None:intergenic | 25.0% |
! | TCTCTTTTCAGCATTCTTTT+CGG | + | tig0039277:7164-7183 | Msa1457890:five_prime_UTR | 30.0% |
TGATCTTGTTAATGCTGAAT+TGG | - | tig0039277:7194-7213 | None:intergenic | 30.0% | |
AAAATAAATATAGGAGGAGG+AGG | - | tig0039277:7264-7283 | None:intergenic | 30.0% | |
TTACTTATGCACACTTTAGA+TGG | + | tig0039277:7480-7499 | Msa1457890:intron | 30.0% | |
CATATCAACATTTCTGTCTT+AGG | + | tig0039277:7510-7529 | Msa1457890:intron | 30.0% | |
GGCGTAAGAAAAATTGATTA+TGG | - | tig0039277:7812-7831 | None:intergenic | 30.0% | |
!!! | ACCTGTTTTTTTTTTTGTCG+AGG | + | tig0039277:7919-7938 | Msa1457890:intron | 30.0% |
ACCTCGACAAAAAAAAAAAC+AGG | - | tig0039277:7923-7942 | None:intergenic | 30.0% | |
! | AGATAAATAGTGGAGTGATA+AGG | - | tig0039277:8108-8127 | None:intergenic | 30.0% |
!!! | ATAAGGTTGGTTTTATGGTT+GGG | - | tig0039277:8138-8157 | None:intergenic | 30.0% |
!!! | TATAAGGTTGGTTTTATGGT+TGG | - | tig0039277:8139-8158 | None:intergenic | 30.0% |
TGAGATGTAACATATAAGGT+TGG | - | tig0039277:8151-8170 | None:intergenic | 30.0% | |
! | AATTATAATGTGCATTGGCA+CGG | - | tig0039277:8326-8345 | None:intergenic | 30.0% |
GATTCCAGTATTGTTGAAAT+GGG | - | tig0039277:8854-8873 | None:intergenic | 30.0% | |
TGATTCCAGTATTGTTGAAA+TGG | - | tig0039277:8855-8874 | None:intergenic | 30.0% | |
ACCTATTATTGTCACAACAT+GGG | + | tig0039277:8876-8895 | Msa1457890:CDS | 30.0% | |
AGTAAGTTACTCCAAGTAAA+AGG | - | tig0039277:9011-9030 | None:intergenic | 30.0% | |
CTGAATATAACTGAATACGT+GGG | + | tig0039277:9048-9067 | Msa1457890:CDS | 30.0% | |
TGAATATAACTGAATACGTG+GGG | + | tig0039277:9049-9068 | Msa1457890:CDS | 30.0% | |
CATTAATGATGTATCTGGAA+GGG | + | tig0039277:9074-9093 | Msa1457890:CDS | 30.0% | |
!!! | TGGACGCATTTTTGATTTTA+TGG | + | tig0039277:9130-9149 | Msa1457890:CDS | 30.0% |
AAAAACACTAGAACAGTTAC+AGG | + | tig0039277:9170-9189 | Msa1457890:CDS | 30.0% | |
TTGAGCAAAGATAATAGGTA+CGG | - | tig0039277:9218-9237 | None:intergenic | 30.0% | |
AAAACGGAGTTCTGTTAAAT+TGG | + | tig0039277:9349-9368 | Msa1457890:CDS | 30.0% | |
AAGTAAATTAAAGTCGGGAT+TGG | - | tig0039277:9608-9627 | None:intergenic | 30.0% | |
! | TATTTCCTATTTCTCACAAG+TGG | + | tig0039277:9698-9717 | Msa1457890:intron | 30.0% |
! | TTTTACCACTTGTGAGAAAT+AGG | - | tig0039277:9706-9725 | None:intergenic | 30.0% |
AGTGAAAATAACTTACAGGA+AGG | + | tig0039277:9763-9782 | Msa1457890:intron | 30.0% | |
ACATTCAGTTGTCAATGTAT+GGG | + | tig0039277:9805-9824 | Msa1457890:intron | 30.0% | |
ACCTTCTACCTATTAGAATA+AGG | + | tig0039277:10188-10207 | Msa1457890:intron | 30.0% | |
TCAAGGAAACCTCAAAAAAT+TGG | + | tig0039277:10287-10306 | Msa1457890:intron | 30.0% | |
! | GCATTTTTCTCTTGTTCATT+TGG | - | tig0039277:10343-10362 | None:intergenic | 30.0% |
AGAGAAAAATGCATGATCAA+AGG | + | tig0039277:10351-10370 | Msa1457890:intron | 30.0% | |
TGAATCAAGTGATGACTAAA+TGG | + | tig0039277:10425-10444 | Msa1457890:intron | 30.0% | |
GAATCAAGTGATGACTAAAT+GGG | + | tig0039277:10426-10445 | Msa1457890:intron | 30.0% | |
! | AAATGGGATTCTTCATTTTG+TGG | + | tig0039277:10442-10461 | Msa1457890:intron | 30.0% |
TCTGTGTTATATGTTATCTC+TGG | + | tig0039277:10749-10768 | Msa1457890:CDS | 30.0% | |
CTGTGTTATATGTTATCTCT+GGG | + | tig0039277:10750-10769 | Msa1457890:CDS | 30.0% | |
GTAGTAAAGCCGTAAAAAAA+AGG | + | tig0039277:10928-10947 | Msa1457890:intron | 30.0% | |
AAGGAGAAATAAGTTTAGTC+AGG | + | tig0039277:11139-11158 | Msa1457890:CDS | 30.0% | |
TCACATTCTTTGTTCCAAAA+TGG | + | tig0039277:11376-11395 | Msa1457890:three_prime_UTR | 30.0% | |
CACTTAATTCAATAGTCAGT+GGG | - | tig0039277:11496-11515 | None:intergenic | 30.0% | |
ACACTTAATTCAATAGTCAG+TGG | - | tig0039277:11497-11516 | None:intergenic | 30.0% | |
AGCATTACCGAATGTAAGAA+CGG | - | tig0039277:7435-7454 | None:intergenic | 35.0% | |
TAGATGCTAGACTCAAATGA+AGG | + | tig0039277:7553-7572 | Msa1457890:intron | 35.0% | |
AGATGCTAGACTCAAATGAA+GGG | + | tig0039277:7554-7573 | Msa1457890:intron | 35.0% | |
!! | GATATGTTTGGTTCCACTTT+TGG | + | tig0039277:7580-7599 | Msa1457890:intron | 35.0% |
!!! | GACACCTCTAGAATCAATTT+TGG | - | tig0039277:7611-7630 | None:intergenic | 35.0% |
GAGCTATGTTTGTGTAAAGT+GGG | - | tig0039277:7765-7784 | None:intergenic | 35.0% | |
TGAGCTATGTTTGTGTAAAG+TGG | - | tig0039277:7766-7785 | None:intergenic | 35.0% | |
AATCCAAACATACACGTGTT+TGG | - | tig0039277:7841-7860 | None:intergenic | 35.0% | |
TTCACCAAACTGTTAACTAC+CGG | - | tig0039277:7893-7912 | None:intergenic | 35.0% | |
! | AAATAGTGGAGTGATAAGGA+GGG | - | tig0039277:8104-8123 | None:intergenic | 35.0% |
! | TAAATAGTGGAGTGATAAGG+AGG | - | tig0039277:8105-8124 | None:intergenic | 35.0% |
! | TGCAGATTTTCTTCTCCTAA+TGG | - | tig0039277:8287-8306 | None:intergenic | 35.0% |
GAAGTTTCTATCACAAAGAC+TGG | + | tig0039277:8550-8569 | Msa1457890:CDS | 35.0% | |
! | GATTGTTTGAGATGATTCTC+TGG | + | tig0039277:8815-8834 | Msa1457890:CDS | 35.0% |
TATGCCCATTTCAACAATAC+TGG | + | tig0039277:8847-8866 | Msa1457890:CDS | 35.0% | |
GACCTATTATTGTCACAACA+TGG | + | tig0039277:8875-8894 | Msa1457890:CDS | 35.0% | |
ACCCATGTTGTGACAATAAT+AGG | - | tig0039277:8880-8899 | None:intergenic | 35.0% | |
! | ACATCAAAGGTCCTTTTACT+TGG | + | tig0039277:8997-9016 | Msa1457890:CDS | 35.0% |
GCTGAATATAACTGAATACG+TGG | + | tig0039277:9047-9066 | Msa1457890:CDS | 35.0% | |
CCTTCCAGATACATCATTAA+TGG | - | tig0039277:9076-9095 | None:intergenic | 35.0% | |
CCATTAATGATGTATCTGGA+AGG | + | tig0039277:9073-9092 | Msa1457890:CDS | 35.0% | |
TGAGCAAAGATAATAGGTAC+GGG | - | tig0039277:9217-9236 | None:intergenic | 35.0% | |
GGAACTTGAGCAAAGATAAT+AGG | - | tig0039277:9223-9242 | None:intergenic | 35.0% | |
CTCAAATGCACTAGTAGTAA+CGG | + | tig0039277:9388-9407 | Msa1457890:CDS | 35.0% | |
GTAATATAACACAGCGAAAC+AGG | - | tig0039277:9546-9565 | None:intergenic | 35.0% | |
TCCATATCACCTTTGCATTT+AGG | + | tig0039277:9656-9675 | Msa1457890:intron | 35.0% | |
ACCTAAATGCAAAGGTGATA+TGG | - | tig0039277:9660-9679 | None:intergenic | 35.0% | |
! | GAATGTGTTGCATGGTATTT+TGG | - | tig0039277:9791-9810 | None:intergenic | 35.0% |
CACATTCAGTTGTCAATGTA+TGG | + | tig0039277:9804-9823 | Msa1457890:intron | 35.0% | |
! | ACAACGTAGATAAGCTCTAA+AGG | - | tig0039277:9916-9935 | None:intergenic | 35.0% |
AGTGTAGAAATGCTAGCATT+TGG | + | tig0039277:9946-9965 | Msa1457890:intron | 35.0% | |
TTTCCTGGGTAAATATCAAG+TGG | + | tig0039277:10030-10049 | Msa1457890:intron | 35.0% | |
TATCCACTTGATATTTACCC+AGG | - | tig0039277:10036-10055 | None:intergenic | 35.0% | |
AAGAGGCTTCTGATTAGAAA+AGG | + | tig0039277:10073-10092 | Msa1457890:intron | 35.0% | |
AGAGGCTTCTGATTAGAAAA+GGG | + | tig0039277:10074-10093 | Msa1457890:intron | 35.0% | |
! | GCCTTATTCTAATAGGTAGA+AGG | - | tig0039277:10192-10211 | None:intergenic | 35.0% |
GTCAAACACAAACAAAAGCA+GGG | - | tig0039277:10503-10522 | None:intergenic | 35.0% | |
AGTCAAACACAAACAAAAGC+AGG | - | tig0039277:10504-10523 | None:intergenic | 35.0% | |
! | AATGCACCTTTGAGAACTTT+GGG | - | tig0039277:10782-10801 | None:intergenic | 35.0% |
ATTCTAACGTCTGATTCAGA+TGG | + | tig0039277:10983-11002 | Msa1457890:intron | 35.0% | |
CAAAAGAAGTGAGACTCTAT+CGG | - | tig0039277:11012-11031 | None:intergenic | 35.0% | |
TTAGTCAGGCAAGAGAAAAA+TGG | + | tig0039277:11153-11172 | Msa1457890:CDS | 35.0% | |
TTTACAACACCTCCTATTGA+GGG | - | tig0039277:11317-11336 | None:intergenic | 35.0% | |
! | TTTTACAACACCTCCTATTG+AGG | - | tig0039277:11318-11337 | None:intergenic | 35.0% |
GATGCTAGACTCAAATGAAG+GGG | + | tig0039277:7555-7574 | Msa1457890:intron | 40.0% | |
AATGAAGGGGACGATATGTT+TGG | + | tig0039277:7568-7587 | Msa1457890:intron | 40.0% | |
!! | ATGTTTGGTTCCACTTTTGG+AGG | + | tig0039277:7583-7602 | Msa1457890:intron | 40.0% |
!!! | AATTTTGGCTCCTCCAAAAG+TGG | - | tig0039277:7596-7615 | None:intergenic | 40.0% |
! | GGAGCCAAAATTGATTCTAG+AGG | + | tig0039277:7604-7623 | Msa1457890:intron | 40.0% |
GCACTCGAGTAGAATTGATT+TGG | + | tig0039277:7655-7674 | Msa1457890:intron | 40.0% | |
GAACCAAACACGTGTATGTT+TGG | + | tig0039277:7835-7854 | Msa1457890:intron | 40.0% | |
CTCATGCTTCATCAATCTCA+TGG | - | tig0039277:7966-7985 | None:intergenic | 40.0% | |
!!! | ACACTGACTTTTTCTGCTTG+TGG | + | tig0039277:8240-8259 | Msa1457890:intron | 40.0% |
!!! | CACTGACTTTTTCTGCTTGT+GGG | + | tig0039277:8241-8260 | Msa1457890:intron | 40.0% |
! | TTTTTCTGCTTGTGGGTGAT+AGG | + | tig0039277:8248-8267 | Msa1457890:intron | 40.0% |
GATATAGGCGGTTCTGTTTA+TGG | + | tig0039277:8367-8386 | Msa1457890:CDS | 40.0% | |
ACCTCTGATTTAGCGAAGAT+GGG | + | tig0039277:8412-8431 | Msa1457890:CDS | 40.0% | |
CAATTAGTGTCAGTTGCAGA+AGG | - | tig0039277:8469-8488 | None:intergenic | 40.0% | |
CTTCTGCAACTGACACTAAT+TGG | + | tig0039277:8467-8486 | Msa1457890:CDS | 40.0% | |
ATCACGATATCCTTGAGCTT+GGG | - | tig0039277:8607-8626 | None:intergenic | 40.0% | |
ACAATCTGGAAAAACCCTGA+TGG | + | tig0039277:8637-8656 | Msa1457890:CDS | 40.0% | |
CAATCTGGAAAAACCCTGAT+GGG | + | tig0039277:8638-8657 | Msa1457890:CDS | 40.0% | |
GTTCTATGTATTTATGGCGC+TGG | + | tig0039277:8693-8712 | Msa1457890:CDS | 40.0% | |
ATGTTTGCCTTGGCATTGTT+TGG | + | tig0039277:8719-8738 | Msa1457890:CDS | 40.0% | |
! | TCCTTCAGTATGTGAGGTTT+TGG | + | tig0039277:8743-8762 | Msa1457890:CDS | 40.0% |
! | CCTTCAGTATGTGAGGTTTT+GGG | + | tig0039277:8744-8763 | Msa1457890:CDS | 40.0% |
CACTGTATCTCAGCTGTTAT+TGG | + | tig0039277:8787-8806 | Msa1457890:CDS | 40.0% | |
! | ATCTCAGCTGTTATTGGTCT+TGG | + | tig0039277:8793-8812 | Msa1457890:CDS | 40.0% |
TCTCATTCTCTCTGTTTCCA+TGG | + | tig0039277:8939-8958 | Msa1457890:CDS | 40.0% | |
CTCATTCTCTCTGTTTCCAT+GGG | + | tig0039277:8940-8959 | Msa1457890:CDS | 40.0% | |
GGGACCATTAATGATGTATC+TGG | + | tig0039277:9069-9088 | Msa1457890:CDS | 40.0% | |
AGTTCTTCCTGATGCTTTCT+TGG | + | tig0039277:9110-9129 | Msa1457890:CDS | 40.0% | |
!! | GTAGGGTGCTGTAAAATAGT+AGG | - | tig0039277:9244-9263 | None:intergenic | 40.0% |
ATCTTCCTTGTCAGGCAAAA+CGG | + | tig0039277:9333-9352 | Msa1457890:intron | 40.0% | |
AGTTGTCTGGATAGGTTATG+AGG | + | tig0039277:9421-9440 | Msa1457890:CDS | 40.0% | |
TCACCTTTGCATTTAGGTAC+CGG | + | tig0039277:9662-9681 | Msa1457890:intron | 40.0% | |
GAAATATAAAGGAACAGGCC+CGG | - | tig0039277:9684-9703 | None:intergenic | 40.0% | |
TGACAACTGAATGTGTTGCA+TGG | - | tig0039277:9799-9818 | None:intergenic | 40.0% | |
!! | GTAGATAAGCTCTAAAGGAG+TGG | - | tig0039277:9911-9930 | None:intergenic | 40.0% |
CTTCTGATTAGAAAAGGGAG+AGG | + | tig0039277:10079-10098 | Msa1457890:intron | 40.0% | |
GAGCTCAAAGAACATTGTCA+AGG | + | tig0039277:10270-10289 | Msa1457890:intron | 40.0% | |
CTCTTGTTCATTTGGCTGAT+AGG | - | tig0039277:10335-10354 | None:intergenic | 40.0% | |
AGCAGGGATATAAACACATC+TGG | - | tig0039277:10487-10506 | None:intergenic | 40.0% | |
TTGGATCATCACTGCATTCT+GGG | + | tig0039277:10705-10724 | Msa1457890:CDS | 40.0% | |
! | CAATGCACCTTTGAGAACTT+TGG | - | tig0039277:10783-10802 | None:intergenic | 40.0% |
TTTACAATGTTGTGTGGGTG+AGG | + | tig0039277:10888-10907 | Msa1457890:intron | 40.0% | |
TACGCATACTCAGAGAAAGT+GGG | + | tig0039277:11060-11079 | Msa1457890:CDS | 40.0% | |
AGAAGCCATGTCTCTAACTA+AGG | + | tig0039277:11101-11120 | Msa1457890:CDS | 40.0% | |
GAAGCCATGTCTCTAACTAA+GGG | + | tig0039277:11102-11121 | Msa1457890:CDS | 40.0% | |
CTTTCCCTTAGTTAGAGACA+TGG | - | tig0039277:11109-11128 | None:intergenic | 40.0% | |
CTAACTAAGGGAAAGCAAGA+AGG | + | tig0039277:11114-11133 | Msa1457890:CDS | 40.0% | |
CATCAGAAGATGCATCAGTT+TGG | - | tig0039277:11179-11198 | None:intergenic | 40.0% | |
ACGAGTCAGAAGAGGATAAA+AGG | + | tig0039277:11208-11227 | Msa1457890:CDS | 40.0% | |
CGAGTCAGAAGAGGATAAAA+GGG | + | tig0039277:11209-11228 | Msa1457890:CDS | 40.0% | |
! | TCTTTTAGCCCTTGCATACT+AGG | + | tig0039277:11466-11485 | Msa1457890:three_prime_UTR | 40.0% |
TGGGATTTCCTAGTATGCAA+GGG | - | tig0039277:11477-11496 | None:intergenic | 40.0% | |
CTCTCTTTGGCAGATGAGAT+TGG | - | tig0039277:7103-7122 | None:intergenic | 45.0% | |
CGTTGCAACTTCACTCTCTT+TGG | - | tig0039277:7116-7135 | None:intergenic | 45.0% | |
TGAAGAAGACGCGAACAACA+TGG | - | tig0039277:7233-7252 | None:intergenic | 45.0% | |
AATATAGGAGGAGGAGGAGA+AGG | - | tig0039277:7258-7277 | None:intergenic | 45.0% | |
GATGTGGATGGATGCAAATG+AGG | - | tig0039277:7299-7318 | None:intergenic | 45.0% | |
TTCGCGATTGTAGATGTGGA+TGG | - | tig0039277:7311-7330 | None:intergenic | 45.0% | |
AAGGTTCGCGATTGTAGATG+TGG | - | tig0039277:7315-7334 | None:intergenic | 45.0% | |
!! | CGCGAACCTTTTCAAGATGT+CGG | + | tig0039277:7325-7344 | Msa1457890:CDS | 45.0% |
GCATTGCCGACATCTTGAAA+AGG | - | tig0039277:7334-7353 | None:intergenic | 45.0% | |
! | GGCAATGCTTTTCTTCTCTC+CGG | + | tig0039277:7346-7365 | Msa1457890:CDS | 45.0% |
! | AATGCTTTTCTTCTCTCCGG+TGG | + | tig0039277:7349-7368 | Msa1457890:CDS | 45.0% |
!! | CATACACGTGTTTGGTTCTG+CGG | - | tig0039277:7833-7852 | None:intergenic | 45.0% |
TGAGCCGGTAGTTAACAGTT+TGG | + | tig0039277:7886-7905 | Msa1457890:intron | 45.0% | |
GGGATGGAGGAGATAAATAG+TGG | - | tig0039277:8118-8137 | None:intergenic | 45.0% | |
!!! | TGGTTTTATGGTTGGGATGG+AGG | - | tig0039277:8131-8150 | None:intergenic | 45.0% |
!!! | GGTTGGTTTTATGGTTGGGA+TGG | - | tig0039277:8134-8153 | None:intergenic | 45.0% |
GAGAAGAAAATCTGCAGCCA+GGG | + | tig0039277:8291-8310 | Msa1457890:CDS | 45.0% | |
GCTGCTGATCGTGATGATAT+AGG | + | tig0039277:8352-8371 | Msa1457890:CDS | 45.0% | |
GCTGATCGTGATGATATAGG+CGG | + | tig0039277:8355-8374 | Msa1457890:CDS | 45.0% | |
ATAGGCGGTTCTGTTTATGG+AGG | + | tig0039277:8370-8389 | Msa1457890:CDS | 45.0% | |
CACCTCTGATTTAGCGAAGA+TGG | + | tig0039277:8411-8430 | Msa1457890:CDS | 45.0% | |
TCCCATCTTCGCTAAATCAG+AGG | - | tig0039277:8416-8435 | None:intergenic | 45.0% | |
AAGATGGGAGCTTGTAAGCA+AGG | + | tig0039277:8427-8446 | Msa1457890:CDS | 45.0% | |
GTAAGCAAGGAGAGGTTATC+AGG | + | tig0039277:8440-8459 | Msa1457890:CDS | 45.0% | |
TCACGATATCCTTGAGCTTG+GGG | - | tig0039277:8606-8625 | None:intergenic | 45.0% | |
CATCACGATATCCTTGAGCT+TGG | - | tig0039277:8608-8627 | None:intergenic | 45.0% | |
CTCAAGGATATCGTGATGAG+CGG | + | tig0039277:8610-8629 | Msa1457890:CDS | 45.0% | |
TCAAGGATATCGTGATGAGC+GGG | + | tig0039277:8611-8630 | Msa1457890:CDS | 45.0% | |
!!! | AACCCTGATGGGTTTTTACC+CGG | + | tig0039277:8649-8668 | Msa1457890:CDS | 45.0% |
TACCGGGTAAAAACCCATCA+GGG | - | tig0039277:8654-8673 | None:intergenic | 45.0% | |
! | TGGGTTTTTACCCGGTAGAA+TGG | + | tig0039277:8657-8676 | Msa1457890:CDS | 45.0% |
TTTAATGGGGCCATTCTACC+GGG | - | tig0039277:8670-8689 | None:intergenic | 45.0% | |
CTTTAATGGGGCCATTCTAC+CGG | - | tig0039277:8671-8690 | None:intergenic | 45.0% | |
! | TTTGGCTCCTTCAGTATGTG+AGG | + | tig0039277:8737-8756 | Msa1457890:CDS | 45.0% |
CCCAAAACCTCACATACTGA+AGG | - | tig0039277:8747-8766 | None:intergenic | 45.0% | |
! | ACAACATGGGTTGTCACTGT+TGG | + | tig0039277:8889-8908 | Msa1457890:CDS | 45.0% |
! | CAACATGGGTTGTCACTGTT+GGG | + | tig0039277:8890-8909 | Msa1457890:CDS | 45.0% |
! | AACATGGGTTGTCACTGTTG+GGG | + | tig0039277:8891-8910 | Msa1457890:CDS | 45.0% |
! | CTCTCTGTTTCCATGGGTTA+TGG | + | tig0039277:8946-8965 | Msa1457890:CDS | 45.0% |
TCTTGGCGGTCTTACATCAA+AGG | + | tig0039277:8984-9003 | Msa1457890:CDS | 45.0% | |
ATGATGTATCTGGAAGGGCA+AGG | + | tig0039277:9079-9098 | Msa1457890:CDS | 45.0% | |
!! | AATGCGTCCAAGAAAGCATC+AGG | - | tig0039277:9120-9139 | None:intergenic | 45.0% |
CTGTCTGTATCTTCCTTGTC+AGG | + | tig0039277:9325-9344 | Msa1457890:intron | 45.0% | |
ACCTCTTCAGTTGTCTGGAT+AGG | + | tig0039277:9413-9432 | Msa1457890:CDS | 45.0% | |
ACCTATCCAGACAACTGAAG+AGG | - | tig0039277:9417-9436 | None:intergenic | 45.0% | |
CACCTTTGCATTTAGGTACC+GGG | + | tig0039277:9663-9682 | Msa1457890:intron | 45.0% | |
AAGCTTAAGAGCCCTTAGCT+GGG | - | tig0039277:9840-9859 | None:intergenic | 45.0% | |
TTTCCAAACATGAGGGAGCT+AGG | - | tig0039277:9884-9903 | None:intergenic | 45.0% | |
TGGCCAGTTTCCAAACATGA+GGG | - | tig0039277:9891-9910 | None:intergenic | 45.0% | |
TAGGTAGAAGGTCAGCTACA+TGG | - | tig0039277:10180-10199 | None:intergenic | 45.0% | |
! | CATTTGGCTGATAGGTTGAG+TGG | - | tig0039277:10327-10346 | None:intergenic | 45.0% |
CAGATCCATTTAATGAGCGC+TGG | + | tig0039277:10674-10693 | Msa1457890:CDS | 45.0% | |
CTTGGATCATCACTGCATTC+TGG | + | tig0039277:10704-10723 | Msa1457890:CDS | 45.0% | |
! | CACCTTTGAGAACTTTGGGA+AGG | - | tig0039277:10778-10797 | None:intergenic | 45.0% |
GTACGCATACTCAGAGAAAG+TGG | + | tig0039277:11059-11078 | Msa1457890:CDS | 45.0% | |
AAGGGAAAGCAAGAAGGACA+AGG | + | tig0039277:11120-11139 | Msa1457890:CDS | 45.0% | |
TGAAGATGACGAGTCAGAAG+AGG | + | tig0039277:11200-11219 | Msa1457890:CDS | 45.0% | |
! | TCTGTACTGTTTTCCCTGCT+GGG | + | tig0039277:11263-11282 | Msa1457890:three_prime_UTR | 45.0% |
TGAGACTTGAAAACCCAGCA+GGG | - | tig0039277:11279-11298 | None:intergenic | 45.0% | |
TTGAGACTTGAAAACCCAGC+AGG | - | tig0039277:11280-11299 | None:intergenic | 45.0% | |
GTGGGATTTCCTAGTATGCA+AGG | - | tig0039277:11478-11497 | None:intergenic | 45.0% | |
!! | AAAAAATAATAAATACTAAT+AGG | - | tig0039277:10013-10032 | None:intergenic | 5.0% |
GATGGAATCGGTATGGGAAG+CGG | - | tig0039277:7404-7423 | None:intergenic | 50.0% | |
GTCGTGGATGGAATCGGTAT+GGG | - | tig0039277:7410-7429 | None:intergenic | 50.0% | |
!! | CATACCGATTCCATCCACGA+CGG | + | tig0039277:7409-7428 | Msa1457890:CDS | 50.0% |
ACGACGGCCGTTCTTACATT+CGG | + | tig0039277:7425-7444 | Msa1457890:CDS | 50.0% | |
GCTCATCTTACACTGGTCCT+TGG | - | tig0039277:7871-7890 | None:intergenic | 50.0% | |
AGGACCAGTGTAAGATGAGC+CGG | + | tig0039277:7871-7890 | Msa1457890:intron | 50.0% | |
!! | ACTACCGGCTCATCTTACAC+TGG | - | tig0039277:7878-7897 | None:intergenic | 50.0% |
TGGAGTGATAAGGAGGGAGA+CGG | - | tig0039277:8098-8117 | None:intergenic | 50.0% | |
GGAGAAGAAAATCTGCAGCC+AGG | + | tig0039277:8290-8309 | Msa1457890:CDS | 50.0% | |
TGATGAGCGGGAAGACAATC+TGG | + | tig0039277:8623-8642 | Msa1457890:CDS | 50.0% | |
CTACCGGGTAAAAACCCATC+AGG | - | tig0039277:8655-8674 | None:intergenic | 50.0% | |
GAAGGAGCCAAACAATGCCA+AGG | - | tig0039277:8729-8748 | None:intergenic | 50.0% | |
TCGCACAACACCATAACCCA+TGG | - | tig0039277:8959-8978 | None:intergenic | 50.0% | |
GATGTAAGACCGCCAAGAGT+GGG | - | tig0039277:8982-9001 | None:intergenic | 50.0% | |
TGATGTAAGACCGCCAAGAG+TGG | - | tig0039277:8983-9002 | None:intergenic | 50.0% | |
! | GAACTCCGTTTTGCCTGACA+AGG | - | tig0039277:9341-9360 | None:intergenic | 50.0% |
CGGTTACCTCTTCAGTTGTC+TGG | + | tig0039277:9408-9427 | Msa1457890:CDS | 50.0% | |
GGTGTATGTGTCCCAGCTAA+GGG | + | tig0039277:9826-9845 | Msa1457890:intron | 50.0% | |
GAAGCTTAAGAGCCCTTAGC+TGG | - | tig0039277:9841-9860 | None:intergenic | 50.0% | |
TGTCCTAGCTCCCTCATGTT+TGG | + | tig0039277:9878-9897 | Msa1457890:intron | 50.0% | |
GCTCCCTCATGTTTGGAAAC+TGG | + | tig0039277:9885-9904 | Msa1457890:intron | 50.0% | |
GTGGCCAGTTTCCAAACATG+AGG | - | tig0039277:9892-9911 | None:intergenic | 50.0% | |
CTCTGCCAGCGCTCATTAAA+TGG | - | tig0039277:10682-10701 | None:intergenic | 50.0% | |
CGCCTTCCCAAAGTTCTCAA+AGG | + | tig0039277:10773-10792 | Msa1457890:CDS | 50.0% | |
TTTGCCTCTGCGAACTACGT+AGG | + | tig0039277:11037-11056 | Msa1457890:intron | 50.0% | |
CAGGGAAAACAGTACAGACG+TGG | - | tig0039277:11261-11280 | None:intergenic | 50.0% | |
! | GTCTGTACTGTTTTCCCTGC+TGG | + | tig0039277:11262-11281 | Msa1457890:three_prime_UTR | 50.0% |
AACACCTCCTATTGAGGGTC+GGG | - | tig0039277:11312-11331 | None:intergenic | 50.0% | |
CAACACCTCCTATTGAGGGT+CGG | - | tig0039277:11313-11332 | None:intergenic | 50.0% | |
AACTGCACCACATACACGCG+CGG | - | tig0039277:7071-7090 | None:intergenic | 55.0% | |
CGTCGTGGATGGAATCGGTA+TGG | - | tig0039277:7411-7430 | None:intergenic | 55.0% | |
GAATGTAAGAACGGCCGTCG+TGG | - | tig0039277:7426-7445 | None:intergenic | 55.0% | |
GGGAGCTTGTAAGCAAGGAG+AGG | + | tig0039277:8432-8451 | Msa1457890:CDS | 55.0% | |
AGCTTGTGACCCCAAGCTCA+AGG | + | tig0039277:8594-8613 | Msa1457890:CDS | 55.0% | |
!! | GCGCTGGCTTATGTTTGCCT+TGG | + | tig0039277:8709-8728 | Msa1457890:CDS | 55.0% |
GGCCCGGTACCTAAATGCAA+AGG | - | tig0039277:9668-9687 | None:intergenic | 55.0% | |
GGGTGTATGTGTCCCAGCTA+AGG | + | tig0039277:9825-9844 | Msa1457890:intron | 55.0% | |
CGTACCTACGTAGTTCGCAG+AGG | - | tig0039277:11044-11063 | None:intergenic | 55.0% | |
ACACCTCCTATTGAGGGTCG+GGG | - | tig0039277:11311-11330 | None:intergenic | 55.0% | |
GCTAGATCCGCGCGTGTATG+TGG | + | tig0039277:7061-7080 | Msa1457890:five_prime_UTR | 60.0% | |
CTTCTCTCCGGTGGCAGTGA+AGG | + | tig0039277:7358-7377 | Msa1457890:CDS | 60.0% | |
ATGGGAAGCGGTGGAGATGG+AGG | - | tig0039277:7392-7411 | None:intergenic | 60.0% | |
GGTATGGGAAGCGGTGGAGA+TGG | - | tig0039277:7395-7414 | None:intergenic | 60.0% | |
GGAATCGGTATGGGAAGCGG+TGG | - | tig0039277:7401-7420 | None:intergenic | 60.0% | |
ACGGCCGTCGTGGATGGAAT+CGG | - | tig0039277:7416-7435 | None:intergenic | 60.0% | |
GTAAGAACGGCCGTCGTGGA+TGG | - | tig0039277:7422-7441 | None:intergenic | 60.0% | |
! | GGTGTTGTGCGACCCACTCT+TGG | + | tig0039277:8967-8986 | Msa1457890:CDS | 60.0% |
GTTGTGCGACCCACTCTTGG+CGG | + | tig0039277:8970-8989 | Msa1457890:CDS | 60.0% | |
!! | ATGAGCGCTGGCAGAGTGCT+TGG | + | tig0039277:10686-10705 | Msa1457890:CDS | 60.0% |
CGTCTTCCCCGACCCTCAAT+AGG | + | tig0039277:11302-11321 | Msa1457890:three_prime_UTR | 60.0% | |
CTTCCCCGACCCTCAATAGG+AGG | + | tig0039277:11305-11324 | Msa1457890:three_prime_UTR | 60.0% | |
GGCGATGCCTTCACTGCCAC+CGG | - | tig0039277:7368-7387 | None:intergenic | 65.0% | |
GGAAGCGGTGGAGATGGAGG+CGG | - | tig0039277:7389-7408 | None:intergenic | 65.0% | |
AAATCTGCAGCCAGGGCGCG+TGG | + | tig0039277:8298-8317 | Msa1457890:CDS | 65.0% | |
TGGCACGGTACCACGCGCCC+TGG | - | tig0039277:8311-8330 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0039277 | gene | 7041 | 11546 | 7041 | ID=Msa1457890;Name=Msa1457890 |
tig0039277 | mRNA | 7041 | 11546 | 7041 | ID=Msa1457890-mRNA-1;Parent=Msa1457890;Name=Msa1457890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|1|1|5|310|515 |
tig0039277 | exon | 7041 | 7446 | 7041 | ID=Msa1457890-mRNA-1:exon:21450;Parent=Msa1457890-mRNA-1 |
tig0039277 | exon | 8270 | 9191 | 8270 | ID=Msa1457890-mRNA-1:exon:21451;Parent=Msa1457890-mRNA-1 |
tig0039277 | exon | 9347 | 9442 | 9347 | ID=Msa1457890-mRNA-1:exon:21452;Parent=Msa1457890-mRNA-1 |
tig0039277 | exon | 10658 | 10794 | 10658 | ID=Msa1457890-mRNA-1:exon:21453;Parent=Msa1457890-mRNA-1 |
tig0039277 | exon | 11059 | 11546 | 11059 | ID=Msa1457890-mRNA-1:exon:21454;Parent=Msa1457890-mRNA-1 |
tig0039277 | five_prime_UTR | 7041 | 7231 | 7041 | ID=Msa1457890-mRNA-1:five_prime_utr;Parent=Msa1457890-mRNA-1 |
tig0039277 | CDS | 7232 | 7446 | 7232 | ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1 |
tig0039277 | CDS | 8270 | 9191 | 8270 | ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1 |
tig0039277 | CDS | 9347 | 9442 | 9347 | ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1 |
tig0039277 | CDS | 10658 | 10794 | 10658 | ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1 |
tig0039277 | CDS | 11059 | 11236 | 11059 | ID=Msa1457890-mRNA-1:cds;Parent=Msa1457890-mRNA-1 |
tig0039277 | three_prime_UTR | 11237 | 11546 | 11237 | ID=Msa1457890-mRNA-1:three_prime_utr;Parent=Msa1457890-mRNA-1 |
Gene Sequence |
Protein sequence |