AlfalfaGEDB | Msa0189270

M. sativa cultivar zhongmu-4 / Msa0189270

KEGG: -
GO: GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0012505 GO:0016020 GO:0031090 GO:0031984 GO:0031985 GO:0032580 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098791
PFAM: PF06814.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189270	XP_003593093.1	97.670	515	10	1	1	515	1	513	0.0	1028

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189270	sp\|Q28EW0\|TM87A_XENTR	32.484	314	200	6	198	506	197	503	8.22e-51	185

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189270	A2Q492	97.670	515	10	1	1	515	1	513	0.0	1028

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002420	Msa0189270	0.811518	6.724644e-51	-8.615850e-47
Msa0040790	Msa0189270	0.801499	8.749917e-49	-8.615850e-47
Msa0077560	Msa0189270	0.802134	6.480128e-49	-8.615850e-47
Msa0169410	Msa0189270	0.812545	4.017948e-51	-8.615850e-47
Msa0184500	Msa0189270	0.816379	5.701991e-52	-8.615850e-47
Msa0189270	Msa0225480	0.808396	3.161172e-50	-8.615850e-47
Msa0189270	Msa0231630	0.832808	7.650503e-56	-8.615850e-47
Msa0189270	Msa0281470	0.810189	1.304742e-50	-8.615850e-47
Msa0189270	Msa0307270	0.807516	4.865721e-50	-8.615850e-47
Msa0189270	Msa0309720	0.893601	5.399522e-75	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189270	MtrunA17_Chr2g0278311	97.670	515	10	1	1	515	1	513	0.0	1028
Msa0189270	MtrunA17_Chr8g0344451	55.172	493	212	5	25	515	20	505	0.0	558
Msa0189270	MtrunA17_Chr5g0428321	52.115	520	233	6	10	515	24	541	0.0	533
Msa0189270	MtrunA17_Chr8g0334581	42.262	504	238	9	25	515	28	491	2.53e-132	393

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189270	AT2G01070.1	64.427	506	158	6	11	515	12	496	0.0	664
Msa0189270	AT2G01070.2	64.602	452	147	2	11	461	12	451	0.0	614
Msa0189270	AT1G72480.1	53.737	495	221	4	25	515	19	509	0.0	551
Msa0189270	AT1G61670.1	47.070	512	251	6	13	515	13	513	1.62e-157	458
Msa0189270	AT1G61670.2	47.070	512	251	6	13	515	13	513	1.62e-157	458
Msa0189270	AT1G10980.1	36.765	476	277	9	25	482	25	494	1.97e-101	315

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Find 154 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGAGTTCTGTTAAAT+TGG	0.268399	2_1:+4688294	Msa0189270:CDS
AAAATAAATATAGGAGGAGG+AGG	0.478489	2_1:-4686223	None:intergenic
AAAGAAGTTCTATGTATTTA+TGG	0.124995	2_1:+4687632	Msa0189270:CDS
AAATATAGATCTATAATGAC+TGG	0.523698	2_1:-4687435	None:intergenic
AAATCTGCAGCCAGGGCGCG+TGG	0.589551	2_1:+4687243	Msa0189270:CDS
AACACCTCCTATTGAGGGTC+GGG	0.433247	2_1:-4690253	None:intergenic
AACATGGGTTGTCACTGTTG+GGG	0.621382	2_1:+4687836	Msa0189270:CDS
AACTGCACCACATACACGCG+CGG	0.660131	2_1:-4686030	None:intergenic
AAGATGGGAGCTTGTAAGCA+AGG	0.577447	2_1:+4687372	Msa0189270:CDS
AAGGAGAAATAAGTTTAGTC+AGG	0.470161	2_1:+4690083	Msa0189270:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATCTTGTTAATGCTGAAT+TGG	-	chr2_1:4686156-4686175	None:intergenic	30.0%
AAAATAAATATAGGAGGAGG+AGG	-	chr2_1:4686226-4686245	None:intergenic	30.0%
TTACTTATGCACACTTTAGA+TGG	+	chr2_1:4686442-4686461	Msa0189270:intron	30.0%
CATATCAACATTTCTGTCTT+AGG	+	chr2_1:4686472-4686491	Msa0189270:intron	30.0%
GGCGTAAGAAAAATTGATTA+TGG	-	chr2_1:4686756-4686775	None:intergenic	30.0%
TACCTCGACAAAAAAAAAAC+AGG	-	chr2_1:4686867-4686886	None:intergenic	30.0%
TGAGATGTAACATATAAGGT+TGG	-	chr2_1:4687096-4687115	None:intergenic	30.0%
GATTCCAGTATTGTTGAAAT+GGG	-	chr2_1:4687799-4687818	None:intergenic	30.0%
TGATTCCAGTATTGTTGAAA+TGG	-	chr2_1:4687800-4687819	None:intergenic	30.0%
ACCTATTATTGTCACAACAT+GGG	+	chr2_1:4687821-4687840	Msa0189270:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	4686003	4690490	4686003	ID=Msa0189270;Name=Msa0189270
chr2_1	mRNA	4686003	4690490	4686003	ID=Msa0189270-mRNA-1;Parent=Msa0189270;Name=Msa0189270-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191\|1\|1\|1\|1\|1\|5\|310\|515
chr2_1	exon	4686003	4686408	4686003	ID=Msa0189270-mRNA-1:exon:2042;Parent=Msa0189270-mRNA-1
chr2_1	exon	4687215	4688136	4687215	ID=Msa0189270-mRNA-1:exon:2043;Parent=Msa0189270-mRNA-1
chr2_1	exon	4688292	4688387	4688292	ID=Msa0189270-mRNA-1:exon:2044;Parent=Msa0189270-mRNA-1
chr2_1	exon	4689602	4689738	4689602	ID=Msa0189270-mRNA-1:exon:2045;Parent=Msa0189270-mRNA-1
chr2_1	exon	4690003	4690490	4690003	ID=Msa0189270-mRNA-1:exon:2046;Parent=Msa0189270-mRNA-1
chr2_1	five_prime_UTR	4686003	4686193	4686003	ID=Msa0189270-mRNA-1:five_prime_utr;Parent=Msa0189270-mRNA-1
chr2_1	CDS	4686194	4686408	4686194	ID=Msa0189270-mRNA-1:cds;Parent=Msa0189270-mRNA-1
chr2_1	CDS	4687215	4688136	4687215	ID=Msa0189270-mRNA-1:cds;Parent=Msa0189270-mRNA-1
chr2_1	CDS	4688292	4688387	4688292	ID=Msa0189270-mRNA-1:cds;Parent=Msa0189270-mRNA-1
chr2_1	CDS	4689602	4689738	4689602	ID=Msa0189270-mRNA-1:cds;Parent=Msa0189270-mRNA-1
chr2_1	CDS	4690003	4690180	4690003	ID=Msa0189270-mRNA-1:cds;Parent=Msa0189270-mRNA-1
chr2_1	three_prime_UTR	4690181	4690490	4690181	ID=Msa0189270-mRNA-1:three_prime_utr;Parent=Msa0189270-mRNA-1

Gene Sequence

>Msa0189270

ATGTTGTTCGCGTCTTCTTCACTCCTTCTCCTCCTCCTCCTATATTTATTTTCATTTCTATTTACCTCATTTGCATCCATCCACATCTACAATCGCGAACCTTTTCAAGATGTCGGCAATGCTTTTCTTCTCTCCGGTGGCAGTGAAGGCATCGCCGCCTCCATCTCCACCGCTTCCCATACCGATTCCATCCACGACGGCCGTTCTTACATTCGGTTTGAAAATATAACCATTAGGAGAAGAAAATCTGCAGCCAGGGCGCGTGGTACCGTGCCAATGCACATTATAATTTTTGAGGCTGCTGATCGTGATGATATAGGCGGTTCTGTTTATGGAGGACAACGAGCAATATGTTGCACCTCTGATTTAGCGAAGATGGGAGCTTGTAAGCAAGGAGAGGTTATCAGGAGACCTTCTGCAACTGACACTAATTGGCCAGTCATTATAGATCTATATTTCAAGGGGAAATCCCGAATTATCACTTTAGATTCTAAGGAAGTTTCTATCACAAAGACTGGAATGTATAATTTGTTTTTTGTAGCTTGTGACCCCAAGCTCAAGGATATCGTGATGAGCGGGAAGACAATCTGGAAAAACCCTGATGGGTTTTTACCCGGTAGAATGGCCCCATTAAAGAAGTTCTATGTATTTATGGCGCTGGCTTATGTTTGCCTTGGCATTGTTTGGCTCCTTCAGTATGTGAGGTTTTGGGATGATGTATTGCTACTTCAGCACTGTATCTCAGCTGTTATTGGTCTTGGATTGTTTGAGATGATTCTCTGGTATTTTGAGTATGCCCATTTCAACAATACTGGAATCAGACCTATTATTGTCACAACATGGGTTGTCACTGTTGGGGCAATAAGAAAAACAATAGCACGGCTTCTCATTCTCTCTGTTTCCATGGGTTATGGTGTTGTGCGACCCACTCTTGGCGGTCTTACATCAAAGGTCCTTTTACTTGGAGTAACTTACTTTCTTGCATCAGAGTTGCTGAATATAACTGAATACGTGGGGACCATTAATGATGTATCTGGAAGGGCAAGGCTCTTTCTAGTTCTTCCTGATGCTTTCTTGGACGCATTTTTGATTTTATGGATTTTTACTTCTCTGTCAAAAACACTAGAACAGTTACAGGCAAAACGGAGTTCTGTTAAATTGGATATATACAGGAAATTCTCAAATGCACTAGTAGTAACGGTTACCTCTTCAGTTGTCTGGATAGGTTATGAGGTTTACTTCAAAGCAACAGATCCATTTAATGAGCGCTGGCAGAGTGCTTGGATCATCACTGCATTCTGGGACATTCTAGCATTTGCACTACTCTGTGTTATATGTTATCTCTGGGCGCCTTCCCAAAGTTCTCAAAGGTACGCATACTCAGAGAAAGTGGGAGAAGAATCTGATGACGAAGAAGCCATGTCTCTAACTAAGGGAAAGCAAGAAGGACAAGGAGAAATAAGTTTAGTCAGGCAAGAGAAAAATGGCCAAACTGATGCATCTTCTGATGATGAAGATGACGAGTCAGAAGAGGATAAAAGGGAATAA

Protein sequence

>Msa0189270

MLFASSSLLLLLLLYLFSFLFTSFASIHIYNREPFQDVGNAFLLSGGSEGIAASISTASHTDSIHDGRSYIRFENITIRRRKSAARARGTVPMHIIIFEAADRDDIGGSVYGGQRAICCTSDLAKMGACKQGEVIRRPSATDTNWPVIIDLYFKGKSRIITLDSKEVSITKTGMYNLFFVACDPKLKDIVMSGKTIWKNPDGFLPGRMAPLKKFYVFMALAYVCLGIVWLLQYVRFWDDVLLLQHCISAVIGLGLFEMILWYFEYAHFNNTGIRPIIVTTWVVTVGAIRKTIARLLILSVSMGYGVVRPTLGGLTSKVLLLGVTYFLASELLNITEYVGTINDVSGRARLFLVLPDAFLDAFLILWIFTSLSKTLEQLQAKRSSVKLDIYRKFSNALVVTVTSSVVWIGYEVYFKATDPFNERWQSAWIITAFWDILAFALLCVICYLWAPSQSSQRYAYSEKVGEESDDEEAMSLTKGKQEGQGEISLVRQEKNGQTDASSDDEDDESEEDKRE*