Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590830 | XP_024638279.1 | 90.414 | 459 | 10 | 2 | 1 | 426 | 575 | 1032 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0590830 | 0.839745 | 1.318443e-57 | -8.615850e-47 |
| Msa0001940 | Msa0590830 | 0.818764 | 1.653330e-52 | -8.615850e-47 |
| Msa0002710 | Msa0590830 | 0.806352 | 8.576417e-50 | -8.615850e-47 |
| Msa0005890 | Msa0590830 | 0.811050 | 8.499563e-51 | -8.615850e-47 |
| Msa0017950 | Msa0590830 | 0.820645 | 6.149281e-53 | -8.615850e-47 |
| Msa0021500 | Msa0590830 | 0.804015 | 2.645352e-49 | -8.615850e-47 |
| Msa0028420 | Msa0590830 | 0.806267 | 8.935820e-50 | -8.615850e-47 |
| Msa0030370 | Msa0590830 | 0.814827 | 1.263483e-51 | -8.615850e-47 |
| Msa0032920 | Msa0590830 | -0.818059 | 2.388716e-52 | -8.615850e-47 |
| Msa0032960 | Msa0590830 | -0.820340 | 7.222487e-53 | -8.615850e-47 |
| Msa0035060 | Msa0590830 | 0.814511 | 1.484148e-51 | -8.615850e-47 |
| Msa0042610 | Msa0590830 | 0.811254 | 7.673737e-51 | -8.615850e-47 |
| Msa0043620 | Msa0590830 | 0.804541 | 2.055771e-49 | -8.615850e-47 |
| Msa0048510 | Msa0590830 | 0.821665 | 3.577470e-53 | -8.615850e-47 |
| Msa0054690 | Msa0590830 | 0.808791 | 2.603091e-50 | -8.615850e-47 |
| Msa0077340 | Msa0590830 | 0.809198 | 2.130085e-50 | -8.615850e-47 |
| Msa0077560 | Msa0590830 | 0.808668 | 2.766471e-50 | -8.615850e-47 |
| Msa0081390 | Msa0590830 | 0.826951 | 2.046348e-54 | -8.615850e-47 |
| Msa0081450 | Msa0590830 | 0.824135 | 9.511434e-54 | -8.615850e-47 |
| Msa0081520 | Msa0590830 | 0.810796 | 9.646202e-51 | -8.615850e-47 |
| Msa0081570 | Msa0590830 | 0.804525 | 2.071461e-49 | -8.615850e-47 |
| Msa0094780 | Msa0590830 | 0.831688 | 1.448276e-55 | -8.615850e-47 |
| Msa0101270 | Msa0590830 | 0.800744 | 1.248435e-48 | -8.615850e-47 |
| Msa0106620 | Msa0590830 | 0.812842 | 3.459544e-51 | -8.615850e-47 |
| Msa0106710 | Msa0590830 | 0.804518 | 2.078362e-49 | -8.615850e-47 |
| Msa0133150 | Msa0590830 | 0.811473 | 6.880221e-51 | -8.615850e-47 |
| Msa0133280 | Msa0590830 | 0.829039 | 6.432946e-55 | -8.615850e-47 |
| Msa0138370 | Msa0590830 | 0.822438 | 2.368530e-53 | -8.615850e-47 |
| Msa0168500 | Msa0590830 | 0.804240 | 2.375138e-49 | -8.615850e-47 |
| Msa0173690 | Msa0590830 | 0.831472 | 1.637336e-55 | -8.615850e-47 |
| Msa0173730 | Msa0590830 | 0.812266 | 4.621808e-51 | -8.615850e-47 |
| Msa0175750 | Msa0590830 | 0.821835 | 3.268976e-53 | -8.615850e-47 |
| Msa0182190 | Msa0590830 | 0.807726 | 4.391581e-50 | -8.615850e-47 |
| Msa0190570 | Msa0590830 | 0.810610 | 1.057997e-50 | -8.615850e-47 |
| Msa0219880 | Msa0590830 | 0.817451 | 3.275146e-52 | -8.615850e-47 |
| Msa0221000 | Msa0590830 | 0.833147 | 6.301377e-56 | -8.615850e-47 |
| Msa0221470 | Msa0590830 | 0.808860 | 2.516552e-50 | -8.615850e-47 |
| Msa0223080 | Msa0590830 | 0.805330 | 1.406024e-49 | -8.615850e-47 |
| Msa0225100 | Msa0590830 | 0.825189 | 5.368909e-54 | -8.615850e-47 |
| Msa0225860 | Msa0590830 | 0.853725 | 1.976513e-61 | -8.615850e-47 |
| Msa0237210 | Msa0590830 | 0.821001 | 5.092607e-53 | -8.615850e-47 |
| Msa0369790 | Msa0590830 | 0.809112 | 2.222414e-50 | -8.615850e-47 |
| Msa0371030 | Msa0590830 | 0.812704 | 3.707726e-51 | -8.615850e-47 |
| Msa0372810 | Msa0590830 | 0.807832 | 4.168832e-50 | -8.615850e-47 |
| Msa0378720 | Msa0590830 | 0.824512 | 7.755940e-54 | -8.615850e-47 |
| Msa0378970 | Msa0590830 | 0.803706 | 3.066578e-49 | -8.615850e-47 |
| Msa0428370 | Msa0590830 | 0.812373 | 4.380540e-51 | -8.615850e-47 |
| Msa0428580 | Msa0590830 | 0.820121 | 8.110248e-53 | -8.615850e-47 |
| Msa0428920 | Msa0590830 | 0.813430 | 2.569821e-51 | -8.615850e-47 |
| Msa0464000 | Msa0590830 | 0.806463 | 8.127473e-50 | -8.615850e-47 |
| Msa0474730 | Msa0590830 | 0.822570 | 2.206976e-53 | -8.615850e-47 |
| Msa0474940 | Msa0590830 | 0.807494 | 4.919150e-50 | -8.615850e-47 |
| Msa0479170 | Msa0590830 | 0.804335 | 2.269267e-49 | -8.615850e-47 |
| Msa0241630 | Msa0590830 | 0.803460 | 3.449134e-49 | -8.615850e-47 |
| Msa0242590 | Msa0590830 | 0.803890 | 2.809118e-49 | -8.615850e-47 |
| Msa0244640 | Msa0590830 | 0.836774 | 7.684300e-57 | -8.615850e-47 |
| Msa0254790 | Msa0590830 | 0.818862 | 1.570436e-52 | -8.615850e-47 |
| Msa0260510 | Msa0590830 | 0.815255 | 1.015325e-51 | -8.615850e-47 |
| Msa0266180 | Msa0590830 | 0.811260 | 7.651016e-51 | -8.615850e-47 |
| Msa0271880 | Msa0590830 | 0.805609 | 1.229278e-49 | -8.615850e-47 |
| Msa0274980 | Msa0590830 | 0.824146 | 9.451633e-54 | -8.615850e-47 |
| Msa0279710 | Msa0590830 | 0.809496 | 1.838998e-50 | -8.615850e-47 |
| Msa0283330 | Msa0590830 | 0.803699 | 3.076880e-49 | -8.615850e-47 |
| Msa0287740 | Msa0590830 | 0.834544 | 2.818826e-56 | -8.615850e-47 |
| Msa0298470 | Msa0590830 | 0.824477 | 7.900708e-54 | -8.615850e-47 |
| Msa0300270 | Msa0590830 | 0.823827 | 1.123322e-53 | -8.615850e-47 |
| Msa0300320 | Msa0590830 | 0.829570 | 4.782000e-55 | -8.615850e-47 |
| Msa0302160 | Msa0590830 | 0.804132 | 2.501578e-49 | -8.615850e-47 |
| Msa0307270 | Msa0590830 | 0.823469 | 1.362229e-53 | -8.615850e-47 |
| Msa0310850 | Msa0590830 | 0.814499 | 1.493666e-51 | -8.615850e-47 |
| Msa0315690 | Msa0590830 | 0.835508 | 1.611073e-56 | -8.615850e-47 |
| Msa0321620 | Msa0590830 | 0.812950 | 3.274756e-51 | -8.615850e-47 |
| Msa0330380 | Msa0590830 | 0.801594 | 8.363729e-49 | -8.615850e-47 |
| Msa0337700 | Msa0590830 | 0.850014 | 2.232276e-60 | -8.615850e-47 |
| Msa0339490 | Msa0590830 | 0.801323 | 9.503548e-49 | -8.615850e-47 |
| Msa0339500 | Msa0590830 | 0.803906 | 2.787496e-49 | -8.615850e-47 |
| Msa0340500 | Msa0590830 | 0.839851 | 1.236995e-57 | -8.615850e-47 |
| Msa0341690 | Msa0590830 | 0.811165 | 8.025707e-51 | -8.615850e-47 |
| Msa0361910 | Msa0590830 | 0.808598 | 2.862141e-50 | -8.615850e-47 |
| Msa0483100 | Msa0590830 | 0.807129 | 5.877978e-50 | -8.615850e-47 |
| Msa0529030 | Msa0590830 | 0.821376 | 4.172850e-53 | -8.615850e-47 |
| Msa0530780 | Msa0590830 | 0.814058 | 1.869373e-51 | -8.615850e-47 |
| Msa0534720 | Msa0590830 | 0.853769 | 1.918915e-61 | -8.615850e-47 |
| Msa0557460 | Msa0590830 | 0.801614 | 8.286469e-49 | -8.615850e-47 |
| Msa0569200 | Msa0590830 | 0.822669 | 2.093348e-53 | -8.615850e-47 |
| Msa0580370 | Msa0590830 | 0.869361 | 3.280578e-66 | -8.615850e-47 |
| Msa0581470 | Msa0590830 | 0.819401 | 1.184239e-52 | -8.615850e-47 |
| Msa0583360 | Msa0590830 | -0.824742 | 6.843369e-54 | -8.615850e-47 |
| Msa0583830 | Msa0590830 | 0.805073 | 1.591751e-49 | -8.615850e-47 |
| Msa0590830 | Msa0597790 | 0.806144 | 9.487163e-50 | -8.615850e-47 |
| Msa0590830 | Msa0611210 | 0.828813 | 7.296150e-55 | -8.615850e-47 |
| Msa0590830 | Msa0611900 | 0.805276 | 1.443613e-49 | -8.615850e-47 |
| Msa0590830 | Msa0624900 | 0.845309 | 4.400806e-59 | -8.615850e-47 |
| Msa0590830 | Msa0626450 | 0.836475 | 9.155695e-57 | -8.615850e-47 |
| Msa0590830 | Msa0626490 | 0.830673 | 2.573074e-55 | -8.615850e-47 |
| Msa0590830 | Msa0651550 | 0.827748 | 1.317938e-54 | -8.615850e-47 |
| Msa0590830 | Msa0658590 | 0.821115 | 4.792464e-53 | -8.615850e-47 |
| Msa0590830 | Msa0658640 | 0.800794 | 1.219621e-48 | -8.615850e-47 |
| Msa0590830 | Msa0664150 | 0.806180 | 9.324405e-50 | -8.615850e-47 |
| Msa0590830 | Msa0664600 | 0.833311 | 5.737598e-56 | -8.615850e-47 |
| Msa0590830 | Msa0677410 | 0.812126 | 4.960271e-51 | -8.615850e-47 |
| Msa0590830 | Msa0697160 | 0.807978 | 3.881438e-50 | -8.615850e-47 |
| Msa0590830 | Msa0721080 | 0.818189 | 2.231547e-52 | -8.615850e-47 |
| Msa0590830 | Msa0735780 | 0.800465 | 1.422974e-48 | -8.615850e-47 |
| Msa0590830 | Msa0741220 | 0.812181 | 4.823614e-51 | -8.615850e-47 |
| Msa0590830 | Msa0761670 | 0.810927 | 9.037085e-51 | -8.615850e-47 |
| Msa0590830 | Msa0795870 | 0.868819 | 4.915681e-66 | -8.615850e-47 |
| Msa0590830 | Msa0824450 | 0.806915 | 6.521631e-50 | -8.615850e-47 |
| Msa0590830 | Msa0832120 | 0.802530 | 5.370840e-49 | -8.615850e-47 |
| Msa0590830 | Msa0833650 | 0.864911 | 8.646612e-65 | -8.615850e-47 |
| Msa0590830 | Msa0861510 | 0.820739 | 5.848913e-53 | -8.615850e-47 |
| Msa0590830 | Msa0861600 | 0.829540 | 4.862412e-55 | -8.615850e-47 |
| Msa0590830 | Msa0894400 | 0.802072 | 6.671693e-49 | -8.615850e-47 |
| Msa0590830 | Msa0902510 | 0.808184 | 3.508722e-50 | -8.615850e-47 |
| Msa0590830 | Msa0921000 | 0.811778 | 5.904206e-51 | -8.615850e-47 |
| Msa0590830 | Msa0941190 | 0.803023 | 4.248465e-49 | -8.615850e-47 |
| Msa0590830 | Msa0967870 | 0.807098 | 5.967694e-50 | -8.615850e-47 |
| Msa0590830 | Msa1004840 | 0.826155 | 3.167153e-54 | -8.615850e-47 |
| Msa0590830 | Msa1019430 | 0.803568 | 3.276766e-49 | -8.615850e-47 |
| Msa0590830 | Msa1019470 | 0.804623 | 1.976659e-49 | -8.615850e-47 |
| Msa0590830 | Msa1028280 | 0.801897 | 7.249546e-49 | -8.615850e-47 |
| Msa0590830 | Msa1044470 | 0.814136 | 1.796020e-51 | -8.615850e-47 |
| Msa0590830 | Msa1072940 | 0.825118 | 5.579418e-54 | -8.615850e-47 |
| Msa0590830 | Msa1101090 | 0.821422 | 4.071024e-53 | -8.615850e-47 |
| Msa0590830 | Msa1123380 | 0.807315 | 5.366882e-50 | -8.615850e-47 |
| Msa0590830 | Msa1132480 | 0.806347 | 8.597467e-50 | -8.615850e-47 |
| Msa0590830 | Msa1132840 | 0.869632 | 2.677635e-66 | -8.615850e-47 |
| Msa0590830 | Msa1140210 | 0.807297 | 5.415993e-50 | -8.615850e-47 |
| Msa0590830 | Msa1145810 | 0.840552 | 8.120077e-58 | -8.615850e-47 |
| Msa0590830 | Msa1155170 | -0.846359 | 2.282007e-59 | -8.615850e-47 |
| Msa0590830 | Msa1160920 | 0.827433 | 1.568551e-54 | -8.615850e-47 |
| Msa0590830 | Msa1177320 | 0.819737 | 9.924351e-53 | -8.615850e-47 |
| Msa0590830 | Msa1186020 | 0.854250 | 1.395323e-61 | -8.615850e-47 |
| Msa0590830 | Msa1187200 | 0.800029 | 1.745339e-48 | -8.615850e-47 |
| Msa0590830 | Msa1193170 | 0.815424 | 9.312196e-52 | -8.615850e-47 |
| Msa0590830 | Msa1199570 | 0.815989 | 6.969284e-52 | -8.615850e-47 |
| Msa0590830 | Msa1200890 | 0.827496 | 1.514922e-54 | -8.615850e-47 |
| Msa0590830 | Msa1208950 | 0.824993 | 5.973974e-54 | -8.615850e-47 |
| Msa0590830 | Msa1219000 | 0.803069 | 4.156539e-49 | -8.615850e-47 |
| Msa0590830 | Msa1225860 | -0.828454 | 8.911345e-55 | -8.615850e-47 |
| Msa0590830 | Msa1226470 | 0.827518 | 1.497064e-54 | -8.615850e-47 |
| Msa0590830 | Msa1228200 | 0.827440 | 1.563102e-54 | -8.615850e-47 |
| Msa0590830 | Msa1228870 | 0.801788 | 7.633970e-49 | -8.615850e-47 |
| Msa0590830 | Msa1243490 | 0.804004 | 2.659481e-49 | -8.615850e-47 |
| Msa0590830 | Msa1257300 | 0.816760 | 4.684643e-52 | -8.615850e-47 |
| Msa0590830 | Msa1263490 | 0.825345 | 4.930611e-54 | -8.615850e-47 |
| Msa0590830 | Msa1265650 | 0.801147 | 1.033008e-48 | -8.615850e-47 |
| Msa0590830 | Msa1271270 | 0.801380 | 9.253862e-49 | -8.615850e-47 |
| Msa0590830 | Msa1277220 | 0.820141 | 8.021041e-53 | -8.615850e-47 |
| Msa0590830 | Msa1292590 | 0.801989 | 6.939200e-49 | -8.615850e-47 |
| Msa0590830 | Msa1297230 | 0.831706 | 1.434042e-55 | -8.615850e-47 |
| Msa0590830 | Msa1303560 | 0.813749 | 2.186772e-51 | -8.615850e-47 |
| Msa0590830 | Msa1303650 | 0.813340 | 2.689804e-51 | -8.615850e-47 |
| Msa0590830 | Msa1315590 | 0.817887 | 2.611516e-52 | -8.615850e-47 |
| Msa0590830 | Msa1320670 | 0.805890 | 1.072997e-49 | -8.615850e-47 |
| Msa0590830 | Msa1328710 | 0.818767 | 1.650865e-52 | -8.615850e-47 |
| Msa0590830 | Msa1329980 | 0.818642 | 1.761659e-52 | -8.615850e-47 |
| Msa0590830 | Msa1332760 | 0.826390 | 2.784703e-54 | -8.615850e-47 |
| Msa0590830 | Msa1343170 | 0.813179 | 2.917315e-51 | -8.615850e-47 |
| Msa0590830 | Msa1343180 | 0.812865 | 3.419318e-51 | -8.615850e-47 |
| Msa0590830 | Msa1343430 | 0.834384 | 3.091727e-56 | -8.615850e-47 |
| Msa0590830 | Msa1347310 | 0.800475 | 1.416488e-48 | -8.615850e-47 |
| Msa0590830 | Msa1356830 | 0.800734 | 1.254238e-48 | -8.615850e-47 |
| Msa0590830 | Msa1372040 | 0.825763 | 3.925081e-54 | -8.615850e-47 |
| Msa0590830 | Msa1373100 | 0.813700 | 2.241794e-51 | -8.615850e-47 |
| Msa0590830 | Msa1383530 | 0.805584 | 1.244165e-49 | -8.615850e-47 |
| Msa0590830 | Msa1387620 | 0.803196 | 3.912809e-49 | -8.615850e-47 |
| Msa0590830 | Msa1390440 | 0.821621 | 3.663601e-53 | -8.615850e-47 |
| Msa0590830 | Msa1392580 | 0.821225 | 4.521044e-53 | -8.615850e-47 |
| Msa0590830 | Msa1397400 | 0.829796 | 4.212572e-55 | -8.615850e-47 |
| Msa0590830 | Msa1405460 | 0.816554 | 5.207722e-52 | -8.615850e-47 |
| Msa0590830 | Msa1420950 | 0.801887 | 7.281786e-49 | -8.615850e-47 |
| Msa0590830 | Msa1422950 | 0.813905 | 2.019840e-51 | -8.615850e-47 |
| Msa0590830 | Msa1425880 | 0.801594 | 8.365906e-49 | -8.615850e-47 |
| Msa0590830 | Msa1433810 | 0.804771 | 1.840743e-49 | -8.615850e-47 |
| Msa0590830 | Msa1440310 | 0.814031 | 1.894711e-51 | -8.615850e-47 |
| Msa0590830 | Msa1440880 | 0.809116 | 2.218416e-50 | -8.615850e-47 |
| Msa0590830 | Msa1440960 | 0.824110 | 9.640639e-54 | -8.615850e-47 |
| Msa0590830 | Msa1449480 | 0.810932 | 9.013821e-51 | -8.615850e-47 |
| Msa0590830 | Msa1451160 | 0.808028 | 3.787541e-50 | -8.615850e-47 |
| Msa0590830 | Msa1463900 | 0.806444 | 8.201074e-50 | -8.615850e-47 |
| Msa0590830 | Msa1464810 | 0.803405 | 3.541963e-49 | -8.615850e-47 |
| Msa0590830 | Msa1465440 | 0.802243 | 6.154009e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590830 | MtrunA17_Chr4g0008601 | 90.414 | 459 | 10 | 2 | 1 | 426 | 598 | 1055 | 0.0 | 824 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590830 | AT3G56870.1 | 31.496 | 254 | 109 | 9 | 214 | 418 | 449 | 686 | 5.18e-20 | 93.2 |
| Msa0590830 | AT3G56870.2 | 31.496 | 254 | 109 | 9 | 214 | 418 | 449 | 686 | 5.18e-20 | 93.2 |
Find 93 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATAATATCTTCACCTTTC+TGG | 0.145004 | 4_2:-14601451 | None:intergenic |
| CTGGTTGACAATAACCTTTC+AGG | 0.180532 | 4_2:-14601432 | None:intergenic |
| GATTGCTTCGCGTCGTATTC+AGG | 0.264672 | 4_2:-14601309 | None:intergenic |
| TAGAAGTGGTTCCAATCTTC+AGG | 0.268920 | 4_2:+14602235 | Msa0590830:CDS |
| GATTGCTTCTCCTCGTATTC+AGG | 0.275509 | 4_2:-14601072 | None:intergenic |
| GAACCACTTCTAGAAGTCTT+TGG | 0.283608 | 4_2:-14602224 | None:intergenic |
| TTCTCGTTCAGCAACTCATC+TGG | 0.283858 | 4_2:+14602280 | Msa0590830:CDS |
| TACAGATGGGGCTGAGGTTC+AGG | 0.286950 | 4_2:+14601215 | Msa0590830:CDS |
| GAATTCAATGAAGGAAATTA+TGG | 0.314322 | 4_2:+14602403 | Msa0590830:CDS |
| AAATCATGATTGGCCACTTT+AGG | 0.319489 | 4_2:-14601141 | None:intergenic |
| ACTCAATCCTGATGGGTATC+TGG | 0.335210 | 4_2:+14601029 | Msa0590830:CDS |
| TATCCTCTCACCATCATATA+AGG | 0.338463 | 4_2:-14601340 | None:intergenic |
| TCTTTATCACTAGCCACTTC+AGG | 0.338632 | 4_2:-14600886 | None:intergenic |
| AGGTCTTCAAATTCAATTGC+AGG | 0.365169 | 4_2:-14600802 | None:intergenic |
| TTCACTTGATACTTTATATC+CGG | 0.379672 | 4_2:+14603629 | Msa0590830:three_prime_UTR |
| GTATTACTAATAAGATTGAT+TGG | 0.393885 | 4_2:+14603555 | Msa0590830:three_prime_UTR |
| TAAAGTGGCCAATCATGATT+TGG | 0.395947 | 4_2:+14601143 | Msa0590830:CDS |
| ATTCCGTTTCACTTAGATTC+TGG | 0.397490 | 4_2:-14603483 | None:intergenic |
| CACAAGATGTAGTGCGTAAA+GGG | 0.398113 | 4_2:+14603382 | Msa0590830:CDS |
| ACGAGAAGAATTACGAATCT+TGG | 0.404681 | 4_2:-14602264 | None:intergenic |
| CTTGGAAGCGCCCTGAAGAT+TGG | 0.409102 | 4_2:-14602246 | None:intergenic |
| GGCCATTTCACCATCTTCTC+AGG | 0.413736 | 4_2:+14601533 | Msa0590830:intron |
| ATTGAGTCCATGTTCGTTAG+TGG | 0.429000 | 4_2:-14601013 | None:intergenic |
| TCTCGTTCAGCAACTCATCT+GGG | 0.432277 | 4_2:+14602281 | Msa0590830:CDS |
| TTCCTGAGAAGATGGTGAAA+TGG | 0.433301 | 4_2:-14601535 | None:intergenic |
| GTGGAAAGCTGTGCCAGGTT+AGG | 0.441663 | 4_2:+14603433 | Msa0590830:CDS |
| TCTTTAGTTTCCTTATATGA+TGG | 0.444730 | 4_2:+14601330 | Msa0590830:CDS |
| AGATCTTGACTCTGTAGGTC+TGG | 0.447645 | 4_2:+14600906 | Msa0590830:CDS |
| CATTGAAGAGTTGTAGTTGA+CGG | 0.455084 | 4_2:+14603716 | Msa0590830:three_prime_UTR |
| TAGTAATACAAGTATTAAGA+AGG | 0.456930 | 4_2:-14603541 | None:intergenic |
| GCCACTTCAGGTGGTGAGAC+TGG | 0.473358 | 4_2:-14600874 | None:intergenic |
| CCTCAATCCGGATGGATGTC+CGG | 0.485013 | 4_2:+14601266 | Msa0590830:CDS |
| TCTAAGCTCCAAATCATGAT+TGG | 0.486481 | 4_2:-14601151 | None:intergenic |
| AAAATTTGATTCAACTCGGC+CGG | 0.489123 | 4_2:-14603648 | None:intergenic |
| CCTTTACGCACTACATCTTG+TGG | 0.489160 | 4_2:-14603381 | None:intergenic |
| ACCAATGTCATCATCACCTT+CGG | 0.498819 | 4_2:-14601103 | None:intergenic |
| TCCATGTTCGTTAGTGGCGC+AGG | 0.500439 | 4_2:-14601007 | None:intergenic |
| AGACGAACCGGACATCCATC+CGG | 0.502544 | 4_2:-14601273 | None:intergenic |
| ACTAGTCTCACCACCTAAAG+TGG | 0.502741 | 4_2:+14601128 | Msa0590830:CDS |
| CCACAAGATGTAGTGCGTAA+AGG | 0.518359 | 4_2:+14603381 | Msa0590830:CDS |
| GAATCGTCAGAGAGACGAAC+CGG | 0.520134 | 4_2:-14601285 | None:intergenic |
| AAAAGAGTTGAATTCAATGA+AGG | 0.523260 | 4_2:+14602394 | Msa0590830:CDS |
| TACTGAACAAGGCCTCAATC+CGG | 0.527531 | 4_2:+14601254 | Msa0590830:CDS |
| TTGCCAGAATCTAAGTGAAA+CGG | 0.536185 | 4_2:+14603480 | Msa0590830:exon |
| CCGGACATCCATCCGGATTG+AGG | 0.536667 | 4_2:-14601266 | None:intergenic |
| GCATCACCATTCTTATCAGT+CGG | 0.537879 | 4_2:-14602137 | None:intergenic |
| AGCAGGTGGAAAGCTGTGCC+AGG | 0.538818 | 4_2:+14603428 | Msa0590830:CDS |
| AGAAGTGGTTCCAATCTTCA+GGG | 0.542550 | 4_2:+14602236 | Msa0590830:CDS |
| TGAATCTACAGATGGGGCTG+AGG | 0.543709 | 4_2:+14601209 | Msa0590830:CDS |
| ATTGAGGCCTTGTTCAGTAG+TGG | 0.547060 | 4_2:-14601250 | None:intergenic |
| ATAGCATTCGCTGATGAAGC+AGG | 0.553372 | 4_2:+14603411 | Msa0590830:CDS |
| TCCTGCGCCACTAACGAACA+TGG | 0.554632 | 4_2:+14601006 | Msa0590830:CDS |
| CTCTGCTCCACTACTGAACA+AGG | 0.558590 | 4_2:+14601243 | Msa0590830:CDS |
| AAGGTTATTGTCAACCAGAA+AGG | 0.559038 | 4_2:+14601437 | Msa0590830:CDS |
| TCATGATTGGCCACTTTAGG+TGG | 0.559780 | 4_2:-14601138 | None:intergenic |
| CGACAAACCAGATACCCATC+AGG | 0.561270 | 4_2:-14601036 | None:intergenic |
| GCAGTTCTCGAGACAACACC+AGG | 0.562585 | 4_2:-14602167 | None:intergenic |
| ATAATAATTTCAGAATGCAA+AGG | 0.563309 | 4_2:+14602095 | Msa0590830:intron |
| ACCAGTCTCACCACCTGAAG+TGG | 0.563854 | 4_2:+14600873 | Msa0590830:CDS |
| GGAAAAGCTCTGCAAAGCCA+TGG | 0.566566 | 4_2:+14601554 | Msa0590830:CDS |
| CATCCTCATAGAACCTAACC+TGG | 0.568751 | 4_2:-14603446 | None:intergenic |
| GATAAAGATCTTGACTCTGT+AGG | 0.568827 | 4_2:+14600901 | Msa0590830:CDS |
| ACTGATATCAACGGTCTCCA+TGG | 0.569844 | 4_2:-14601571 | None:intergenic |
| TGAGAGGATACATGTTAAAG+AGG | 0.569994 | 4_2:+14601353 | Msa0590830:CDS |
| GAACATGGACTCAATCCTGA+TGG | 0.572883 | 4_2:+14601021 | Msa0590830:CDS |
| TTTCCTTATATGATGGTGAG+AGG | 0.575102 | 4_2:+14601337 | Msa0590830:CDS |
| ATTCCAAAGACTTCTAGAAG+TGG | 0.576866 | 4_2:+14602221 | Msa0590830:CDS |
| CAAAGCTGCATGGTCCTGAA+AGG | 0.577844 | 4_2:+14601418 | Msa0590830:CDS |
| AAGCAATCATTTGCTTCCGA+AGG | 0.579054 | 4_2:+14601087 | Msa0590830:CDS |
| AGTAAAGATGAATCTACAGA+TGG | 0.580743 | 4_2:+14601201 | Msa0590830:CDS |
| TAGGTTCTATGAGGATGATG+AGG | 0.581252 | 4_2:+14603452 | Msa0590830:CDS |
| GTAAAGATGAATCTACAGAT+GGG | 0.582960 | 4_2:+14601202 | Msa0590830:CDS |
| GTGCCAGGTTAGGTTCTATG+AGG | 0.588042 | 4_2:+14603443 | Msa0590830:CDS |
| ATAAGAATGGTGATGCAGAA+AGG | 0.589346 | 4_2:+14602144 | Msa0590830:CDS |
| CTCGTTCAGCAACTCATCTG+GGG | 0.595242 | 4_2:+14602282 | Msa0590830:CDS |
| TGGAGGTGAAGAACTACTGT+CGG | 0.599354 | 4_2:-14603340 | None:intergenic |
| AATGGTGATGCAGAAAGGCC+TGG | 0.611927 | 4_2:+14602149 | Msa0590830:CDS |
| GAACAAGGCCTCAATCCGGA+TGG | 0.614300 | 4_2:+14601258 | Msa0590830:CDS |
| ACAGAGCCGACTGATAAGAA+TGG | 0.616463 | 4_2:+14602131 | Msa0590830:CDS |
| ATTGAAAATTTGATTCAACT+CGG | 0.625081 | 4_2:-14603652 | None:intergenic |
| AACATGGACTCAATCCTGAT+GGG | 0.628467 | 4_2:+14601022 | Msa0590830:CDS |
| TTATCACTAGCCACTTCAGG+TGG | 0.631593 | 4_2:-14600883 | None:intergenic |
| GTTTCTATGACTGATATCAA+CGG | 0.636051 | 4_2:-14601580 | None:intergenic |
| AGTGAAGATGAATATACAGC+TGG | 0.641533 | 4_2:+14600964 | Msa0590830:CDS |
| GAAGGTAGTTCAAAGCTGCA+TGG | 0.654248 | 4_2:+14601408 | Msa0590830:CDS |
| AGGTTCTATGAGGATGATGA+GGG | 0.655810 | 4_2:+14603453 | Msa0590830:CDS |
| AGATGATTCACCTGAATACG+AGG | 0.657273 | 4_2:+14601062 | Msa0590830:CDS |
| ACTTCTTGTGATGAACATGA+AGG | 0.664199 | 4_2:+14601390 | Msa0590830:CDS |
| TAAAGATGAATCTACAGATG+GGG | 0.666951 | 4_2:+14601203 | Msa0590830:CDS |
| GCATTCGCTGATGAAGCAGG+TGG | 0.668767 | 4_2:+14603414 | Msa0590830:CDS |
| TTACGCACTACATCTTGTGG+AGG | 0.669959 | 4_2:-14603378 | None:intergenic |
| TCCGAAGGTGATGATGACAT+TGG | 0.719898 | 4_2:+14601102 | Msa0590830:CDS |
| TTTGAGATATAAAGTAAACG+AGG | 0.761951 | 4_2:+14602463 | Msa0590830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATAAACAAATGTA+AGG | - | chr4_2:14602084-14602103 | None:intergenic | 10.0% |
| !! | TTTATAGTTCAAAAAAATGT+GGG | - | chr4_2:14601677-14601696 | None:intergenic | 15.0% |
| !! | AAATTTATTGAGCAAAAATA+TGG | + | chr4_2:14601749-14601768 | Msa0590830:intron | 15.0% |
| !! | AAATGTAAGGAAAATAATAT+AGG | - | chr4_2:14602071-14602090 | None:intergenic | 15.0% |
| !!! | AATTAGTCTTTTATTAAAGA+AGG | + | chr4_2:14602686-14602705 | Msa0590830:intron | 15.0% |
| !!! | TACAATTCAATGTTTTAAAT+AGG | - | chr4_2:14602880-14602899 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGATTTTTCAA+GGG | + | chr4_2:14602908-14602927 | Msa0590830:intron | 15.0% |
| !! | AGATCAAATCAAAATACTTA+AGG | - | chr4_2:14601620-14601639 | None:intergenic | 20.0% |
| !! | GTTTATAGTTCAAAAAAATG+TGG | - | chr4_2:14601678-14601697 | None:intergenic | 20.0% |
| !! | TTTCTCCATAATATATTATC+TGG | + | chr4_2:14601911-14601930 | Msa0590830:intron | 20.0% |
| !! | TTCTCCATAATATATTATCT+GGG | + | chr4_2:14601912-14601931 | Msa0590830:intron | 20.0% |
| !! | AAAACCCAGATAATATATTA+TGG | - | chr4_2:14601919-14601938 | None:intergenic | 20.0% |
| !!! | ATATATTATCTGGGTTTTAA+TGG | + | chr4_2:14601921-14601940 | Msa0590830:intron | 20.0% |
| !! | ATAATATAGGTTAAACATTG+AGG | - | chr4_2:14602058-14602077 | None:intergenic | 20.0% |
| !! | ATAATAATTTCAGAATGCAA+AGG | + | chr4_2:14602095-14602114 | Msa0590830:intron | 20.0% |
| !!! | GAATAACTCTATTTTTGTTA+GGG | - | chr4_2:14602205-14602224 | None:intergenic | 20.0% |
| !! | ATATATACTACTAACTACTA+AGG | - | chr4_2:14602585-14602604 | None:intergenic | 20.0% |
| !!! | AATGTTTTAAATAGGAACAT+AGG | - | chr4_2:14602872-14602891 | None:intergenic | 20.0% |
| !!! | CTTGTAATTTTGATTTTTCA+AGG | + | chr4_2:14602907-14602926 | Msa0590830:intron | 20.0% |
| !!! | TAACCATTATTTTACAGAAA+CGG | - | chr4_2:14603081-14603100 | None:intergenic | 20.0% |
| !! | TAGTAATACAAGTATTAAGA+AGG | - | chr4_2:14603544-14603563 | None:intergenic | 20.0% |
| !! | GTATTACTAATAAGATTGAT+TGG | + | chr4_2:14603555-14603574 | Msa0590830:three_prime_UTR | 20.0% |
| !! | ATTGAAAATTTGATTCAACT+CGG | - | chr4_2:14603655-14603674 | None:intergenic | 20.0% |
| !!! | TTCTTTATGCTTGTATTTTA+AGG | + | chr4_2:14603682-14603701 | Msa0590830:three_prime_UTR | 20.0% |
| !! | TCTTTAGTTTCCTTATATGA+TGG | + | chr4_2:14601330-14601349 | Msa0590830:CDS | 25.0% |
| ! | GTCAGAAAAAAAAGATTGTT+GGG | - | chr4_2:14601700-14601719 | None:intergenic | 25.0% |
| ! | TGTCAGAAAAAAAAGATTGT+TGG | - | chr4_2:14601701-14601720 | None:intergenic | 25.0% |
| !! | CAATAAATTTTTCGTCTATC+CGG | - | chr4_2:14601739-14601758 | None:intergenic | 25.0% |
| ! | AAAATATGGTTGTATAGCTA+TGG | + | chr4_2:14601763-14601782 | Msa0590830:intron | 25.0% |
| !! | TATCATGATAGTTTTCATGT+AGG | - | chr4_2:14601789-14601808 | None:intergenic | 25.0% |
| ! | AGAAAAAAATCCATAGATTG+AGG | - | chr4_2:14601965-14601984 | None:intergenic | 25.0% |
| ! | TAGGTAATTCATTAGTAAGT+AGG | + | chr4_2:14602004-14602023 | Msa0590830:intron | 25.0% |
| !!! | GGAATAACTCTATTTTTGTT+AGG | - | chr4_2:14602206-14602225 | None:intergenic | 25.0% |
| ! | AAAAGAGTTGAATTCAATGA+AGG | + | chr4_2:14602394-14602413 | Msa0590830:CDS | 25.0% |
| ! | GAATTCAATGAAGGAAATTA+TGG | + | chr4_2:14602403-14602422 | Msa0590830:CDS | 25.0% |
| !! | TTTGAGATATAAAGTAAACG+AGG | + | chr4_2:14602463-14602482 | Msa0590830:CDS | 25.0% |
| ! | CAGTAGAAATCATTATGATT+TGG | + | chr4_2:14602527-14602546 | Msa0590830:intron | 25.0% |
| ! | TATGTAATCCATATAGTTTG+CGG | + | chr4_2:14602624-14602643 | Msa0590830:intron | 25.0% |
| !! | TAGTCTTTTATTAAAGAAGG+AGG | + | chr4_2:14602689-14602708 | Msa0590830:intron | 25.0% |
| !! | TTTTATACTTGATAGACAGA+GGG | + | chr4_2:14603587-14603606 | Msa0590830:three_prime_UTR | 25.0% |
| ! | TTCACTTGATACTTTATATC+CGG | + | chr4_2:14603629-14603648 | Msa0590830:three_prime_UTR | 25.0% |
| CAAAAATATCAGAGTTATCG+AGG | - | chr4_2:14600825-14600844 | None:intergenic | 30.0% | |
| AGTAAAGATGAATCTACAGA+TGG | + | chr4_2:14601201-14601220 | Msa0590830:CDS | 30.0% | |
| GTAAAGATGAATCTACAGAT+GGG | + | chr4_2:14601202-14601221 | Msa0590830:CDS | 30.0% | |
| TAAAGATGAATCTACAGATG+GGG | + | chr4_2:14601203-14601222 | Msa0590830:CDS | 30.0% | |
| AGATAATATCTTCACCTTTC+TGG | - | chr4_2:14601454-14601473 | None:intergenic | 30.0% | |
| !! | TCATTAGTTCGTTTTTCTTC+AGG | + | chr4_2:14601512-14601531 | Msa0590830:intron | 30.0% |
| GTTTCTATGACTGATATCAA+CGG | - | chr4_2:14601583-14601602 | None:intergenic | 30.0% | |
| ATAGTTCAAAAAAATGTGGG+AGG | - | chr4_2:14601674-14601693 | None:intergenic | 30.0% | |
| ATGAATTACCTAGAACATCA+AGG | - | chr4_2:14601996-14602015 | None:intergenic | 30.0% | |
| ATTCACTAAGAACAAGTTTG+TGG | - | chr4_2:14602496-14602515 | None:intergenic | 30.0% | |
| ! | ACTGCACTATTACTCTAAAA+TGG | - | chr4_2:14602560-14602579 | None:intergenic | 30.0% |
| TAATGAACCAAAAACCTGAA+GGG | - | chr4_2:14602786-14602805 | None:intergenic | 30.0% | |
| ATAATGAACCAAAAACCTGA+AGG | - | chr4_2:14602787-14602806 | None:intergenic | 30.0% | |
| !!! | ATTCTTGATCACTGATTTTC+AGG | + | chr4_2:14602976-14602995 | Msa0590830:intron | 30.0% |
| CAACCGTTTCTGTAAAATAA+TGG | + | chr4_2:14603075-14603094 | Msa0590830:intron | 30.0% | |
| ! | TTAGTTGTCTGTTTCTTGTT+TGG | + | chr4_2:14603283-14603302 | Msa0590830:intron | 30.0% |
| ! | GTTTTATACTTGATAGACAG+AGG | + | chr4_2:14603586-14603605 | Msa0590830:three_prime_UTR | 30.0% |
| AGGTCTTCAAATTCAATTGC+AGG | - | chr4_2:14600805-14600824 | None:intergenic | 35.0% | |
| GATAAAGATCTTGACTCTGT+AGG | + | chr4_2:14600901-14600920 | Msa0590830:CDS | 35.0% | |
| AGTGAAGATGAATATACAGC+TGG | + | chr4_2:14600964-14600983 | Msa0590830:CDS | 35.0% | |
| ! | AAATCATGATTGGCCACTTT+AGG | - | chr4_2:14601144-14601163 | None:intergenic | 35.0% |
| TAAAGTGGCCAATCATGATT+TGG | + | chr4_2:14601143-14601162 | Msa0590830:CDS | 35.0% | |
| TCTAAGCTCCAAATCATGAT+TGG | - | chr4_2:14601154-14601173 | None:intergenic | 35.0% | |
| ! | TTTCCTTATATGATGGTGAG+AGG | + | chr4_2:14601337-14601356 | Msa0590830:CDS | 35.0% |
| TATCCTCTCACCATCATATA+AGG | - | chr4_2:14601343-14601362 | None:intergenic | 35.0% | |
| TGAGAGGATACATGTTAAAG+AGG | + | chr4_2:14601353-14601372 | Msa0590830:CDS | 35.0% | |
| ACTTCTTGTGATGAACATGA+AGG | + | chr4_2:14601390-14601409 | Msa0590830:CDS | 35.0% | |
| AAGGTTATTGTCAACCAGAA+AGG | + | chr4_2:14601437-14601456 | Msa0590830:CDS | 35.0% | |
| GACAAATAAACCCAACAATC+CGG | + | chr4_2:14601717-14601736 | Msa0590830:intron | 35.0% | |
| AGTAATGCTTGAAATTGCCA+TGG | + | chr4_2:14601843-14601862 | Msa0590830:intron | 35.0% | |
| TTCTCACTCAATAAAGTCCA+TGG | - | chr4_2:14601863-14601882 | None:intergenic | 35.0% | |
| TATGTATGCCTTGATGTTCT+AGG | + | chr4_2:14601985-14602004 | Msa0590830:intron | 35.0% | |
| CATTAGTAAGTAGGCGAATT+AGG | + | chr4_2:14602013-14602032 | Msa0590830:intron | 35.0% | |
| ! | ATAAGAATGGTGATGCAGAA+AGG | + | chr4_2:14602144-14602163 | Msa0590830:CDS | 35.0% |
| ! | ATTCCAAAGACTTCTAGAAG+TGG | + | chr4_2:14602221-14602240 | Msa0590830:CDS | 35.0% |
| ACGAGAAGAATTACGAATCT+TGG | - | chr4_2:14602267-14602286 | None:intergenic | 35.0% | |
| ATACTACTCCGCAAACTATA+TGG | - | chr4_2:14602635-14602654 | None:intergenic | 35.0% | |
| GGGCATTAAAATGTAAACAG+AGG | - | chr4_2:14602762-14602781 | None:intergenic | 35.0% | |
| GCTTTAGTAAGTGACAGATA+GGG | - | chr4_2:14602813-14602832 | None:intergenic | 35.0% | |
| TGCTTTAGTAAGTGACAGAT+AGG | - | chr4_2:14602814-14602833 | None:intergenic | 35.0% | |
| CTTACTAAAGCAGATTATGC+CGG | + | chr4_2:14602822-14602841 | Msa0590830:intron | 35.0% | |
| ACAAGAAAGCTCTATGTATC+CGG | - | chr4_2:14602844-14602863 | None:intergenic | 35.0% | |
| AATGCTACAAAAGCTGAAGA+AGG | + | chr4_2:14603016-14603035 | Msa0590830:intron | 35.0% | |
| ! | TCAATTCAAGAGTATGGTAG+AGG | - | chr4_2:14603110-14603129 | None:intergenic | 35.0% |
| TTAAATGCAACCACATGTGT+TGG | - | chr4_2:14603186-14603205 | None:intergenic | 35.0% | |
| GACAAAAACAACATTGACAC+TGG | - | chr4_2:14603220-14603239 | None:intergenic | 35.0% | |
| ! | TGAATACTATCAGCTTTGTG+TGG | + | chr4_2:14603259-14603278 | Msa0590830:intron | 35.0% |
| TTGCCAGAATCTAAGTGAAA+CGG | + | chr4_2:14603480-14603499 | Msa0590830:exon | 35.0% | |
| ATTCCGTTTCACTTAGATTC+TGG | - | chr4_2:14603486-14603505 | None:intergenic | 35.0% | |
| AAAATTTGATTCAACTCGGC+CGG | - | chr4_2:14603651-14603670 | None:intergenic | 35.0% | |
| TCTTTATCACTAGCCACTTC+AGG | - | chr4_2:14600889-14600908 | None:intergenic | 40.0% | |
| ATTGAGTCCATGTTCGTTAG+TGG | - | chr4_2:14601016-14601035 | None:intergenic | 40.0% | |
| AACATGGACTCAATCCTGAT+GGG | + | chr4_2:14601022-14601041 | Msa0590830:CDS | 40.0% | |
| AGATGATTCACCTGAATACG+AGG | + | chr4_2:14601062-14601081 | Msa0590830:CDS | 40.0% | |
| AAGCAATCATTTGCTTCCGA+AGG | + | chr4_2:14601087-14601106 | Msa0590830:CDS | 40.0% | |
| ACCAATGTCATCATCACCTT+CGG | - | chr4_2:14601106-14601125 | None:intergenic | 40.0% | |
| CTGGTTGACAATAACCTTTC+AGG | - | chr4_2:14601435-14601454 | None:intergenic | 40.0% | |
| TTCCTGAGAAGATGGTGAAA+TGG | - | chr4_2:14601538-14601557 | None:intergenic | 40.0% | |
| TTTCGTCTATCCGGATTGTT+GGG | - | chr4_2:14601730-14601749 | None:intergenic | 40.0% | |
| ! | TTTTCGTCTATCCGGATTGT+TGG | - | chr4_2:14601731-14601750 | None:intergenic | 40.0% |
| ATCCATAGATTGAGGTATGC+AGG | - | chr4_2:14601957-14601976 | None:intergenic | 40.0% | |
| GCATCACCATTCTTATCAGT+CGG | - | chr4_2:14602140-14602159 | None:intergenic | 40.0% | |
| ! | GAACCACTTCTAGAAGTCTT+TGG | - | chr4_2:14602227-14602246 | None:intergenic | 40.0% |
| TAGAAGTGGTTCCAATCTTC+AGG | + | chr4_2:14602235-14602254 | Msa0590830:CDS | 40.0% | |
| AGAAGTGGTTCCAATCTTCA+GGG | + | chr4_2:14602236-14602255 | Msa0590830:CDS | 40.0% | |
| !!! | CACTGATTTTCAGGCAAGAA+TGG | + | chr4_2:14602985-14603004 | Msa0590830:intron | 40.0% |
| ! | AAGCTGAAGAAGGTGCAAAA+CGG | + | chr4_2:14603026-14603045 | Msa0590830:intron | 40.0% |
| TGCGCTTCAATTCAAGAGTA+TGG | - | chr4_2:14603116-14603135 | None:intergenic | 40.0% | |
| TAACACAACACCAACACATG+TGG | + | chr4_2:14603173-14603192 | Msa0590830:intron | 40.0% | |
| CACAAGATGTAGTGCGTAAA+GGG | + | chr4_2:14603382-14603401 | Msa0590830:CDS | 40.0% | |
| TAGGTTCTATGAGGATGATG+AGG | + | chr4_2:14603452-14603471 | Msa0590830:CDS | 40.0% | |
| AGGTTCTATGAGGATGATGA+GGG | + | chr4_2:14603453-14603472 | Msa0590830:CDS | 40.0% | |
| TTATCACTAGCCACTTCAGG+TGG | - | chr4_2:14600886-14600905 | None:intergenic | 45.0% | |
| AGATCTTGACTCTGTAGGTC+TGG | + | chr4_2:14600906-14600925 | Msa0590830:CDS | 45.0% | |
| GAACATGGACTCAATCCTGA+TGG | + | chr4_2:14601021-14601040 | Msa0590830:CDS | 45.0% | |
| ! | ACTCAATCCTGATGGGTATC+TGG | + | chr4_2:14601029-14601048 | Msa0590830:CDS | 45.0% |
| GATTGCTTCTCCTCGTATTC+AGG | - | chr4_2:14601075-14601094 | None:intergenic | 45.0% | |
| ! | TCCGAAGGTGATGATGACAT+TGG | + | chr4_2:14601102-14601121 | Msa0590830:CDS | 45.0% |
| ! | ACTAGTCTCACCACCTAAAG+TGG | + | chr4_2:14601128-14601147 | Msa0590830:CDS | 45.0% |
| ! | TCATGATTGGCCACTTTAGG+TGG | - | chr4_2:14601141-14601160 | None:intergenic | 45.0% |
| !! | ATTGAGGCCTTGTTCAGTAG+TGG | - | chr4_2:14601253-14601272 | None:intergenic | 45.0% |
| TACTGAACAAGGCCTCAATC+CGG | + | chr4_2:14601254-14601273 | Msa0590830:CDS | 45.0% | |
| GAAGGTAGTTCAAAGCTGCA+TGG | + | chr4_2:14601408-14601427 | Msa0590830:CDS | 45.0% | |
| ! | CAGAGCTTTTCCTGAGAAGA+TGG | - | chr4_2:14601546-14601565 | None:intergenic | 45.0% |
| ACTGATATCAACGGTCTCCA+TGG | - | chr4_2:14601574-14601593 | None:intergenic | 45.0% | |
| TGTGGGAGGATTCTATAACG+TGG | - | chr4_2:14601660-14601679 | None:intergenic | 45.0% | |
| CTATGACTACAACAGCAGCA+AGG | - | chr4_2:14601825-14601844 | None:intergenic | 45.0% | |
| CTCCTGCATACCTCAATCTA+TGG | + | chr4_2:14601952-14601971 | Msa0590830:intron | 45.0% | |
| ACAGAGCCGACTGATAAGAA+TGG | + | chr4_2:14602131-14602150 | Msa0590830:CDS | 45.0% | |
| TTCTCGTTCAGCAACTCATC+TGG | + | chr4_2:14602280-14602299 | Msa0590830:CDS | 45.0% | |
| TCTCGTTCAGCAACTCATCT+GGG | + | chr4_2:14602281-14602300 | Msa0590830:CDS | 45.0% | |
| !! | CATTTTAATGCCCTCCCTTC+AGG | + | chr4_2:14602769-14602788 | Msa0590830:intron | 45.0% |
| GAACCAAAAACCTGAAGGGA+GGG | - | chr4_2:14602782-14602801 | None:intergenic | 45.0% | |
| TGAACCAAAAACCTGAAGGG+AGG | - | chr4_2:14602783-14602802 | None:intergenic | 45.0% | |
| GTGGCTGTCTTTCATGTCAA+GGG | + | chr4_2:14603048-14603067 | Msa0590830:intron | 45.0% | |
| TGGAGGTGAAGAACTACTGT+CGG | - | chr4_2:14603343-14603362 | None:intergenic | 45.0% | |
| ! | GGTGAGACTACATTTTGTGG+AGG | - | chr4_2:14603360-14603379 | None:intergenic | 45.0% |
| ! | GGAGGTGAGACTACATTTTG+TGG | - | chr4_2:14603363-14603382 | None:intergenic | 45.0% |
| TTACGCACTACATCTTGTGG+AGG | - | chr4_2:14603381-14603400 | None:intergenic | 45.0% | |
| CCTTTACGCACTACATCTTG+TGG | - | chr4_2:14603384-14603403 | None:intergenic | 45.0% | |
| CCACAAGATGTAGTGCGTAA+AGG | + | chr4_2:14603381-14603400 | Msa0590830:CDS | 45.0% | |
| ATAGCATTCGCTGATGAAGC+AGG | + | chr4_2:14603411-14603430 | Msa0590830:CDS | 45.0% | |
| CATCCTCATAGAACCTAACC+TGG | - | chr4_2:14603449-14603468 | None:intergenic | 45.0% | |
| CGACAAACCAGATACCCATC+AGG | - | chr4_2:14601039-14601058 | None:intergenic | 50.0% | |
| TGAATCTACAGATGGGGCTG+AGG | + | chr4_2:14601209-14601228 | Msa0590830:CDS | 50.0% | |
| CTCTGCTCCACTACTGAACA+AGG | + | chr4_2:14601243-14601262 | Msa0590830:CDS | 50.0% | |
| GAATCGTCAGAGAGACGAAC+CGG | - | chr4_2:14601288-14601307 | None:intergenic | 50.0% | |
| GATTGCTTCGCGTCGTATTC+AGG | - | chr4_2:14601312-14601331 | None:intergenic | 50.0% | |
| CAAAGCTGCATGGTCCTGAA+AGG | + | chr4_2:14601418-14601437 | Msa0590830:CDS | 50.0% | |
| GGCCATTTCACCATCTTCTC+AGG | + | chr4_2:14601533-14601552 | Msa0590830:intron | 50.0% | |
| GGAAAAGCTCTGCAAAGCCA+TGG | + | chr4_2:14601554-14601573 | Msa0590830:CDS | 50.0% | |
| ! | AATGGTGATGCAGAAAGGCC+TGG | + | chr4_2:14602149-14602168 | Msa0590830:CDS | 50.0% |
| CTCGTTCAGCAACTCATCTG+GGG | + | chr4_2:14602282-14602301 | Msa0590830:CDS | 50.0% | |
| !! | ATGCCCTCCCTTCAGGTTTT+TGG | + | chr4_2:14602776-14602795 | Msa0590830:intron | 50.0% |
| ! | CTGAAGAAGGTGCAAAACGG+TGG | + | chr4_2:14603029-14603048 | Msa0590830:intron | 50.0% |
| GGTGGCTGTCTTTCATGTCA+AGG | + | chr4_2:14603047-14603066 | Msa0590830:intron | 50.0% | |
| GTGCCAGGTTAGGTTCTATG+AGG | + | chr4_2:14603443-14603462 | Msa0590830:CDS | 50.0% | |
| ACCAGTCTCACCACCTGAAG+TGG | + | chr4_2:14600873-14600892 | Msa0590830:CDS | 55.0% | |
| TCCTGCGCCACTAACGAACA+TGG | + | chr4_2:14601006-14601025 | Msa0590830:CDS | 55.0% | |
| TCCATGTTCGTTAGTGGCGC+AGG | - | chr4_2:14601010-14601029 | None:intergenic | 55.0% | |
| TACAGATGGGGCTGAGGTTC+AGG | + | chr4_2:14601215-14601234 | Msa0590830:CDS | 55.0% | |
| GAACAAGGCCTCAATCCGGA+TGG | + | chr4_2:14601258-14601277 | Msa0590830:CDS | 55.0% | |
| CCTCAATCCGGATGGATGTC+CGG | + | chr4_2:14601266-14601285 | Msa0590830:CDS | 55.0% | |
| AGACGAACCGGACATCCATC+CGG | - | chr4_2:14601276-14601295 | None:intergenic | 55.0% | |
| GCAGTTCTCGAGACAACACC+AGG | - | chr4_2:14602170-14602189 | None:intergenic | 55.0% | |
| !! | CTTGGAAGCGCCCTGAAGAT+TGG | - | chr4_2:14602249-14602268 | None:intergenic | 55.0% |
| GCATTCGCTGATGAAGCAGG+TGG | + | chr4_2:14603414-14603433 | Msa0590830:CDS | 55.0% | |
| GTGGAAAGCTGTGCCAGGTT+AGG | + | chr4_2:14603433-14603452 | Msa0590830:CDS | 55.0% | |
| GCCACTTCAGGTGGTGAGAC+TGG | - | chr4_2:14600877-14600896 | None:intergenic | 60.0% | |
| CCGGACATCCATCCGGATTG+AGG | - | chr4_2:14601269-14601288 | None:intergenic | 60.0% | |
| AGCAGGTGGAAAGCTGTGCC+AGG | + | chr4_2:14603428-14603447 | Msa0590830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 14600796 | 14603736 | 14600796 | ID=Msa0590830;Name=Msa0590830 |
| chr4_2 | mRNA | 14600796 | 14603736 | 14600796 | ID=Msa0590830-mRNA-1;Parent=Msa0590830;Name=Msa0590830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.75|1|1|1|4|239|426 |
| chr4_2 | exon | 14600796 | 14601458 | 14600796 | ID=Msa0590830-mRNA-1:exon:4191;Parent=Msa0590830-mRNA-1 |
| chr4_2 | exon | 14601534 | 14601609 | 14601534 | ID=Msa0590830-mRNA-1:exon:4192;Parent=Msa0590830-mRNA-1 |
| chr4_2 | exon | 14602108 | 14602484 | 14602108 | ID=Msa0590830-mRNA-1:exon:4193;Parent=Msa0590830-mRNA-1 |
| chr4_2 | exon | 14603333 | 14603736 | 14603333 | ID=Msa0590830-mRNA-1:exon:4194;Parent=Msa0590830-mRNA-1 |
| chr4_2 | CDS | 14600796 | 14601458 | 14600796 | ID=Msa0590830-mRNA-1:cds;Parent=Msa0590830-mRNA-1 |
| chr4_2 | CDS | 14601534 | 14601609 | 14601534 | ID=Msa0590830-mRNA-1:cds;Parent=Msa0590830-mRNA-1 |
| chr4_2 | CDS | 14602108 | 14602484 | 14602108 | ID=Msa0590830-mRNA-1:cds;Parent=Msa0590830-mRNA-1 |
| chr4_2 | CDS | 14603333 | 14603497 | 14603333 | ID=Msa0590830-mRNA-1:cds;Parent=Msa0590830-mRNA-1 |
| chr4_2 | three_prime_UTR | 14603498 | 14603736 | 14603498 | ID=Msa0590830-mRNA-1:three_prime_utr;Parent=Msa0590830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
