AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0103250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103250 MtrunA17_Chr1g0146811 97.358 265 7 0 1 265 1 265 0.0 536
Msa0103250 MtrunA17_Chr4g0028921 32.540 252 168 2 6 256 14 264 3.34e-36 129
Msa0103250 MtrunA17_Chr4g0028911 32.143 252 169 2 6 256 14 264 3.83e-36 129
Msa0103250 MtrunA17_Chr1g0171831 30.204 245 164 3 6 244 17 260 8.44e-30 112
Msa0103250 MtrunA17_Chr8g0357481 27.820 266 170 9 6 260 17 271 8.71e-14 69.7
Msa0103250 MtrunA17_Chr3g0122901 27.016 248 167 9 8 252 80 316 2.64e-13 68.6
Msa0103250 MtrunA17_Chr4g0026001 26.538 260 165 8 6 256 17 259 2.73e-13 68.2
Msa0103250 MtrunA17_Chr7g0266981 25.188 266 180 7 6 264 16 269 3.29e-13 67.8
Msa0103250 MtrunA17_Chr4g0044111 24.812 266 181 7 6 264 16 269 2.01e-12 65.9
Msa0103250 MtrunA17_Chr4g0025981 25.670 261 168 8 6 257 44 287 2.86e-12 65.9
Msa0103250 MtrunA17_Chr4g0025971 25.769 260 167 8 6 256 17 259 3.65e-11 62.0
Msa0103250 MtrunA17_Chr4g0075531 27.386 241 157 7 18 252 18 246 4.53e-11 61.6
Msa0103250 MtrunA17_Chr7g0259531 24.706 255 167 7 9 252 17 257 4.86e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103250 AT3G01980.1 59.774 266 106 1 1 265 1 266 4.21e-119 341
Msa0103250 AT3G01980.4 59.774 266 106 1 1 265 1 266 4.21e-119 341
Msa0103250 AT3G01980.3 53.716 296 106 2 1 265 1 296 7.01e-112 324
Msa0103250 AT3G01980.5 58.650 237 97 1 30 265 6 242 1.23e-101 296
Msa0103250 AT3G01980.6 54.598 174 78 1 1 173 1 174 5.35e-66 203
Msa0103250 AT3G01980.2 46.569 204 78 2 1 173 1 204 5.48e-59 187
Msa0103250 AT2G17845.1 33.594 256 163 6 6 256 50 303 7.14e-38 135
Msa0103250 AT1G63380.4 33.202 253 166 3 6 256 22 273 9.14e-38 134
Msa0103250 AT1G63380.3 33.202 253 166 3 6 256 18 269 9.34e-38 134
Msa0103250 AT1G63380.1 33.202 253 166 3 6 256 20 271 1.08e-37 134
Msa0103250 AT1G63380.2 33.202 253 166 3 6 256 25 276 1.21e-37 134
Msa0103250 AT3G55290.2 33.992 253 163 4 6 256 20 270 1.28e-37 134
Msa0103250 AT3G55290.1 33.992 253 163 4 6 256 21 271 1.28e-37 134
Msa0103250 AT1G62610.3 32.411 253 168 3 6 256 18 269 1.07e-36 131
Msa0103250 AT1G62610.2 32.411 253 168 3 6 256 16 267 1.13e-36 131
Msa0103250 AT1G62610.1 32.411 253 168 3 6 256 17 268 1.21e-36 131
Msa0103250 AT1G62610.4 32.411 253 168 3 6 256 22 273 1.50e-36 131
Msa0103250 AT3G55310.1 32.016 253 168 4 6 256 20 270 1.90e-34 125
Msa0103250 AT3G46170.1 30.830 253 171 4 6 256 29 279 2.47e-33 123
Msa0103250 AT2G29150.1 29.480 173 116 4 84 256 95 261 1.92e-13 68.9
Msa0103250 AT2G47140.1 25.954 262 173 7 6 259 9 257 6.16e-12 64.3

Find 120 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATAAAGCTTGTAAAATTT+TGG 0.076813 1_3:-10390589 Msa0103250:CDS
GATTCGTCACAGTTAAAATT+TGG 0.112516 1_3:-10386839 Msa0103250:three_prime_UTR
GATATCACACAGTTAAAATT+TGG 0.136241 1_3:-10386906 Msa0103250:three_prime_UTR
AACAAATAATGTATTATTTC+GGG 0.178408 1_3:+10386422 None:intergenic
CTTTCCCTTCCCACCGATAA+TGG 0.206019 1_3:+10387182 None:intergenic
TGAATTGTGTAAGCAAAATT+TGG 0.212410 1_3:-10386579 Msa0103250:three_prime_UTR
TGTATTTATAACGTCGATAA+TGG 0.234136 1_3:-10389168 Msa0103250:CDS
CATTGTTTGCCTGTGCCTTT+AGG 0.244487 1_3:-10386807 Msa0103250:three_prime_UTR
GTAAAACCATTCAGTTTGTT+AGG 0.247891 1_3:-10386519 Msa0103250:three_prime_UTR
AAACAAATAATGTATTATTT+CGG 0.248249 1_3:+10386421 None:intergenic
AATGATTGAACCATGGTATT+AGG 0.275785 1_3:-10386699 Msa0103250:three_prime_UTR
ATGGATAGTTGATAATTTAA+AGG 0.303331 1_3:+10391110 None:intergenic
TTAAGGCTAAAATATGCTTT+TGG 0.327032 1_3:+10391260 None:intergenic
GGAAGTGGTTGAATTGGATA+TGG 0.334118 1_3:-10390646 Msa0103250:CDS
TTCACACCTGCATCCTTGTT+TGG 0.341452 1_3:+10390829 None:intergenic
GTTTGGTATGTGTAAAAGTT+TGG 0.345644 1_3:+10391080 None:intergenic
ATTCGTCACAGTTAAAATTT+GGG 0.347921 1_3:-10386838 Msa0103250:three_prime_UTR
AAGGGAAAGGGCAGAGAAGT+TGG 0.349755 1_3:-10387168 Msa0103250:CDS
CTGTGCTCCATCAACATATA+TGG 0.350340 1_3:+10387040 None:intergenic
ATTCTACACACCTCTCTTCC+AGG 0.351963 1_3:+10386674 None:intergenic
CTGGAGTTCAGCAGTTAGTT+CGG 0.353967 1_3:-10389094 Msa0103250:CDS
CTGTTAACTCAAGATGATCT+TGG 0.368618 1_3:+10389294 None:intergenic
AGAAATATCGTCGCCATTAG+AGG 0.371340 1_3:+10390874 None:intergenic
GACGAATCATGTCATATCTA+TGG 0.372801 1_3:+10386854 None:intergenic
TGTTGAAGTTCCGCATCCTT+TGG 0.387285 1_3:+10389204 None:intergenic
TTTCCCTTCCCACCGATAAT+GGG 0.391273 1_3:+10387183 None:intergenic
TGTTGTGGAAGTGGTTGAAT+TGG 0.391516 1_3:-10390652 Msa0103250:CDS
GTATTTATAACGTCGATAAT+GGG 0.394081 1_3:-10389167 Msa0103250:CDS
GCATATGCCTCAGCCTTGGC+TGG 0.394449 1_3:-10389113 Msa0103250:CDS
TGCTGCATATGCCTCAGCCT+TGG 0.396535 1_3:-10389117 Msa0103250:CDS
CAGAGAAATAGAGGACATAA+TGG 0.396914 1_3:-10386644 Msa0103250:three_prime_UTR
TTGTGAAACACGTTCTTGTT+TGG 0.409510 1_3:+10391038 None:intergenic
GTGAGTAATACTCTCTTTGT+TGG 0.410502 1_3:+10390896 None:intergenic
GTTAATTGTTATTCTTATGA+AGG 0.411867 1_3:-10390549 Msa0103250:intron
AGAGTATTACTCACCTCTAA+TGG 0.413408 1_3:-10390887 Msa0103250:CDS
GAGGCATATGCAGCAGCTCC+TGG 0.414436 1_3:+10389125 None:intergenic
ATATCACACAGTTAAAATTT+GGG 0.416012 1_3:-10386905 Msa0103250:three_prime_UTR
TGGAGTTCAGCAGTTAGTTC+GGG 0.420239 1_3:-10389093 Msa0103250:intron
TACCATGGTTCAATCATTAG+AGG 0.426104 1_3:+10386704 None:intergenic
CAGGCATCGGCTATGGAGAT+AGG 0.432742 1_3:-10387263 Msa0103250:CDS
ATAATGGGAATTCATCTTCC+AGG 0.433329 1_3:+10387198 None:intergenic
TACTGATTCTGTTGTGGAAG+TGG 0.440619 1_3:-10390661 Msa0103250:CDS
TAAAACCATTCAGTTTGTTA+GGG 0.442469 1_3:-10386518 Msa0103250:three_prime_UTR
ACACAGTTAAAATTTGGGTT+TGG 0.445437 1_3:-10386900 Msa0103250:three_prime_UTR
AGCTTCACTAAATAAATTTG+TGG 0.446349 1_3:-10386753 Msa0103250:three_prime_UTR
AAATTTGGTTATAAGAATGA+TGG 0.447407 1_3:-10386564 Msa0103250:three_prime_UTR
GGAAGATGAATTCCCATTAT+CGG 0.455189 1_3:-10387195 Msa0103250:CDS
GGCAGAGAAGTTGGTGAAAG+AGG 0.458842 1_3:-10387159 Msa0103250:CDS
CAATAGCATTAACTCTGATC+TGG 0.461612 1_3:+10387234 None:intergenic
CACATAAAGGAACGCATCCT+AGG 0.467073 1_3:+10387005 None:intergenic
TTTGAATTTAAACTTTCCTC+GGG 0.469344 1_3:+10391193 None:intergenic
CTTCCAGGGTCCTAATACCA+TGG 0.472428 1_3:+10386689 None:intergenic
TCAGAAAGAGGGCTTTATCC+AGG 0.475145 1_3:-10389143 Msa0103250:CDS
GTTTGAATTTAAACTTTCCT+CGG 0.475521 1_3:+10391192 None:intergenic
ATTCATGTTCAGAGAAATAG+AGG 0.475567 1_3:-10386653 Msa0103250:three_prime_UTR
GTGGAAGAACAATCACATAA+AGG 0.476583 1_3:+10386992 None:intergenic
GCTTCACTAAATAAATTTGT+GGG 0.489772 1_3:-10386752 Msa0103250:three_prime_UTR
AGAGAAATAGAGGACATAAT+GGG 0.491979 1_3:-10386643 Msa0103250:three_prime_UTR
GGAACAACCATATATGTTGA+TGG 0.493494 1_3:-10387047 Msa0103250:CDS
TCTATCCCTAACAAACTGAA+TGG 0.496507 1_3:+10386513 None:intergenic
AGAAAGTATTGGTTCTCTAA+AGG 0.507330 1_3:-10386493 Msa0103250:three_prime_UTR
AATCATGTCATATCTATGGA+TGG 0.508782 1_3:+10386858 None:intergenic
GTCATCTATCTAATCAGTGA+TGG 0.511788 1_3:-10387086 Msa0103250:CDS
ATTATCGGTGGGAAGGGAAA+GGG 0.515455 1_3:-10387180 Msa0103250:CDS
GGAAAGTTTAAATTCAAACT+TGG 0.518846 1_3:-10391188 Msa0103250:five_prime_UTR
TGAGAGTCATAGGAGAGAAG+TGG 0.520603 1_3:-10386606 Msa0103250:three_prime_UTR
CATTATCGGTGGGAAGGGAA+AGG 0.521918 1_3:-10387181 Msa0103250:CDS
TTCGTGTATTTGAGAGTCAT+AGG 0.522875 1_3:-10386616 Msa0103250:three_prime_UTR
CGCACGAGGAAGTGACTCAA+AGG 0.524737 1_3:+10391144 None:intergenic
TCGATAATGGGTTCAGAAAG+AGG 0.524746 1_3:-10389155 Msa0103250:CDS
TGTGTACATCTAAAGCCTAA+AGG 0.530003 1_3:+10386792 None:intergenic
ATTTAGCCAAACAAGGATGC+AGG 0.531939 1_3:-10390835 Msa0103250:intron
AGGCTGTTGGCCAAAGGATG+CGG 0.532056 1_3:-10389214 Msa0103250:CDS
AATTTGGTTATAAGAATGAT+GGG 0.543040 1_3:-10386563 Msa0103250:three_prime_UTR
TTCAGTTACTGATTCTGTTG+TGG 0.546092 1_3:-10390667 Msa0103250:CDS
AAAGGAACGCATCCTAGGCC+TGG 0.552291 1_3:+10387010 None:intergenic
CTGAACTCCAGCCAAGGCTG+AGG 0.556384 1_3:+10389106 None:intergenic
TATTAAAGGCTGTTGGCCAA+AGG 0.558624 1_3:-10389220 Msa0103250:CDS
GAATTCGTTTCAATGCTCAC+TGG 0.560107 1_3:+10390935 None:intergenic
GTATTATTTCGGGAAATCAA+AGG 0.563932 1_3:+10386432 None:intergenic
GATGGGTCATGCTACATGAC+AGG 0.564383 1_3:-10387068 Msa0103250:CDS
TTGTTAGGGATAGAAAGTAT+TGG 0.569687 1_3:-10386504 Msa0103250:three_prime_UTR
GTATGTGTAAAAGTTTGGCT+AGG 0.571349 1_3:+10391085 None:intergenic
AATTCCCATTATCGGTGGGA+AGG 0.575283 1_3:-10387187 Msa0103250:CDS
ATCATGTCATATCTATGGAT+GGG 0.575755 1_3:+10386859 None:intergenic
CATCTAAAGCCTAAAGGCAC+AGG 0.576611 1_3:+10386798 None:intergenic
ATTCCCATTATCGGTGGGAA+GGG 0.578456 1_3:-10387186 Msa0103250:CDS
AGAGTTAATGCTATTGCAAG+AGG 0.584311 1_3:-10387227 Msa0103250:CDS
AGGCAGCACCACTTGAGAGA+TGG 0.586030 1_3:-10387139 Msa0103250:CDS
CACAGTCTATAACCAGGCCT+AGG 0.587077 1_3:-10387022 Msa0103250:CDS
TTATAAGAATGATGGGTGGA+AGG 0.587486 1_3:-10386556 Msa0103250:three_prime_UTR
CGATAATGGGTTCAGAAAGA+GGG 0.588137 1_3:-10389154 Msa0103250:CDS
GGAATTCATCTTCCAGGTGA+AGG 0.588874 1_3:+10387204 None:intergenic
TTCTACACACCTCTCTTCCA+GGG 0.588968 1_3:+10386675 None:intergenic
CTTTGAAAAGTTCCTCGCTG+TGG 0.590199 1_3:+10386973 None:intergenic
TCATCTATCTAATCAGTGAT+GGG 0.590549 1_3:-10387085 Msa0103250:CDS
TATTGCAAGAGGCCTTCACC+TGG 0.592366 1_3:-10387216 Msa0103250:CDS
GTAAAAGTTTGGCTAGGACA+TGG 0.592934 1_3:+10391091 None:intergenic
TGCGGAACTTCAACAAGGGT+GGG 0.594166 1_3:-10389196 Msa0103250:CDS
TATCGACGTTATAAATACAA+TGG 0.599236 1_3:+10389172 None:intergenic
ACATCAAGCCATCTCTCAAG+TGG 0.599720 1_3:+10387131 None:intergenic
GCTTTCAATTTAGCCAAACA+AGG 0.601130 1_3:-10390842 Msa0103250:CDS
GCACGAGGAAGTGACTCAAA+GGG 0.602992 1_3:+10391145 None:intergenic
ATGCGGAACTTCAACAAGGG+TGG 0.606430 1_3:-10389197 Msa0103250:CDS
AGATGAATTCCCATTATCGG+TGG 0.607123 1_3:-10387192 Msa0103250:CDS
AGGCATGTCGCTGTCGCACG+AGG 0.607672 1_3:+10391130 None:intergenic
AATGGCGACGATATTTCTCA+TGG 0.613815 1_3:-10390869 Msa0103250:CDS
GTATTAGGACCCTGGAAGAG+AGG 0.621345 1_3:-10386684 Msa0103250:three_prime_UTR
GAACCATGGTATTAGGACCC+TGG 0.634211 1_3:-10386692 Msa0103250:three_prime_UTR
AGGATGCGGAACTTCAACAA+GGG 0.642788 1_3:-10389200 Msa0103250:CDS
GATGAATTCCCATTATCGGT+GGG 0.643626 1_3:-10387191 Msa0103250:CDS
CTAAAGGCACAGGCAAACAA+TGG 0.644013 1_3:+10386808 None:intergenic
AAGGATGCGGAACTTCAACA+AGG 0.644362 1_3:-10389201 Msa0103250:CDS
TTGGTTATAAGAATGATGGG+TGG 0.649790 1_3:-10386560 Msa0103250:three_prime_UTR
ATGGAGCACAGTCTATAACC+AGG 0.654617 1_3:-10387028 Msa0103250:CDS
ATCCTCTAATGATTGAACCA+TGG 0.673858 1_3:-10386706 Msa0103250:three_prime_UTR
TAACTGCTGAACTCCAGCCA+AGG 0.675105 1_3:+10389100 None:intergenic
GTGATTGTTCTTCCACAGCG+AGG 0.677621 1_3:-10386985 Msa0103250:exon
GTTCTTATAAATAAGACCCG+AGG 0.688039 1_3:-10391209 Msa0103250:five_prime_UTR
CGAGGAAGTGACTCAAAGGG+AGG 0.689101 1_3:+10391148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTTTGTGTATTTTT+AGG - chr1_3:10386926-10386945 Msa0103250:three_prime_UTR 10.0%
!!! AAATTTTTTGTGTATTTTTA+GGG - chr1_3:10386927-10386946 Msa0103250:three_prime_UTR 10.0%
!! TACAAAATCAAATAAAATAA+TGG + chr1_3:10387160-10387179 None:intergenic 10.0%
!!! TCTCATAATTATTATTTTAA+CGG + chr1_3:10389310-10389329 None:intergenic 10.0%
!! TTAAAATAATAATTATGAGA+AGG - chr1_3:10389310-10389329 Msa0103250:intron 10.0%
!! TGAAATAATAAATCTTTAAA+AGG - chr1_3:10389425-10389444 Msa0103250:intron 10.0%
!!! GAAATAATAAATCTTTAAAA+GGG - chr1_3:10389426-10389445 Msa0103250:intron 10.0%
!! AAACAAATAATGTATTATTT+CGG + chr1_3:10391254-10391273 None:intergenic 10.0%
!! GTAATGAACTAAAAAAATTA+AGG + chr1_3:10386432-10386451 None:intergenic 15.0%
!! AAAATCGAAAAAAAAAATGA+AGG + chr1_3:10386888-10386907 None:intergenic 15.0%
!!! AATAGTGAAGATAAATTTTA+TGG - chr1_3:10388417-10388436 Msa0103250:intron 15.0%
!! TAGCTTAATTAAGTATAAAT+TGG - chr1_3:10390243-10390262 Msa0103250:intron 15.0%
!! AACAAATAATGTATTATTTC+GGG + chr1_3:10391253-10391272 None:intergenic 15.0%
!!! ATGGATAGTTGATAATTTAA+AGG + chr1_3:10386565-10386584 None:intergenic 20.0%
!!! ACAACAAACTTTTTTTTGTT+TGG + chr1_3:10386612-10386631 None:intergenic 20.0%
!!! TGATAAAGCTTGTAAAATTT+TGG - chr1_3:10387083-10387102 Msa0103250:CDS 20.0%
!!! GATAAAGCTTGTAAAATTTT+GGG - chr1_3:10387084-10387103 Msa0103250:CDS 20.0%
!!! ATAAAGCTTGTAAAATTTTG+GGG - chr1_3:10387085-10387104 Msa0103250:CDS 20.0%
!!! GTTAATTGTTATTCTTATGA+AGG - chr1_3:10387123-10387142 Msa0103250:CDS 20.0%
!! TGAAAAAGCTTATAGTTTAT+AGG - chr1_3:10387224-10387243 Msa0103250:CDS 20.0%
!! GAAAAAGCTTATAGTTTATA+GGG - chr1_3:10387225-10387244 Msa0103250:CDS 20.0%
!! CAAATTAATCTATTCAAACA+GGG - chr1_3:10387332-10387351 Msa0103250:intron 20.0%
!! TTTATCTTGTGTAATAGAAA+TGG - chr1_3:10387561-10387580 Msa0103250:intron 20.0%
!! AATTAAGCTGTTTATTCAAA+TGG - chr1_3:10387631-10387650 Msa0103250:intron 20.0%
!! ATTAAGCTGTTTATTCAAAT+GGG - chr1_3:10387632-10387651 Msa0103250:intron 20.0%
!! ATATTTATCACAAACTTGAT+AGG + chr1_3:10387745-10387764 None:intergenic 20.0%
!!! CTTATTTAGAGTTTCTTTTT+TGG + chr1_3:10388747-10388766 None:intergenic 20.0%
!!! TTAATGGATATGAAAAGAAA+AGG + chr1_3:10389556-10389575 None:intergenic 20.0%
!! TAATTTCTTACTAATGAGAT+AGG - chr1_3:10389898-10389917 Msa0103250:intron 20.0%
!! AATTTCTTACTAATGAGATA+GGG - chr1_3:10389899-10389918 Msa0103250:intron 20.0%
!!! TGGCATGATATAATTTTTTA+TGG - chr1_3:10390072-10390091 Msa0103250:intron 20.0%
!!! GGCATGATATAATTTTTTAT+GGG - chr1_3:10390073-10390092 Msa0103250:intron 20.0%
!!! TTTTACTTGCTTTTCATATT+TGG - chr1_3:10390288-10390307 Msa0103250:intron 20.0%
!!! AACTTTTATAGCAGATAATA+AGG + chr1_3:10390367-10390386 None:intergenic 20.0%
!! ATATCACACAGTTAAAATTT+GGG - chr1_3:10390767-10390786 Msa0103250:intron 20.0%
!! AAATTTGGTTATAAGAATGA+TGG - chr1_3:10391108-10391127 Msa0103250:five_prime_UTR 20.0%
!! AATTTGGTTATAAGAATGAT+GGG - chr1_3:10391109-10391128 Msa0103250:five_prime_UTR 20.0%
!! TTAAGGCTAAAATATGCTTT+TGG + chr1_3:10386415-10386434 None:intergenic 25.0%
! TTTGAATTTAAACTTTCCTC+GGG + chr1_3:10386482-10386501 None:intergenic 25.0%
! GTTTGAATTTAAACTTTCCT+CGG + chr1_3:10386483-10386502 None:intergenic 25.0%
! GGAAAGTTTAAATTCAAACT+TGG - chr1_3:10386484-10386503 Msa0103250:three_prime_UTR 25.0%
!!! TTTTTTGTGTATTTTTAGGG+TGG - chr1_3:10386930-10386949 Msa0103250:three_prime_UTR 25.0%
!! AAGTATTGCACGAAAAATAA+CGG - chr1_3:10386981-10387000 Msa0103250:three_prime_UTR 25.0%
!!! TTGTAAAATTTTGGGGAAAT+TGG - chr1_3:10387092-10387111 Msa0103250:CDS 25.0%
! GACTTATTCATGAGTTTATA+TGG - chr1_3:10387287-10387306 Msa0103250:intron 25.0%
! GCAAATTAATCTATTCAAAC+AGG - chr1_3:10387331-10387350 Msa0103250:intron 25.0%
! GTTTAAAAACACCTAAACTT+AGG + chr1_3:10387358-10387377 None:intergenic 25.0%
! TTAAGCTGTTTATTCAAATG+GGG - chr1_3:10387633-10387652 Msa0103250:intron 25.0%
!!! TGTGATAAATATGACTTGTT+TGG - chr1_3:10387753-10387772 Msa0103250:intron 25.0%
!! GTATTGAAAGTGATTTTGAA+GGG + chr1_3:10387789-10387808 None:intergenic 25.0%
!! TGTATTGAAAGTGATTTTGA+AGG + chr1_3:10387790-10387809 None:intergenic 25.0%
!! AATACACTCTAACATGATTT+TGG - chr1_3:10387804-10387823 Msa0103250:intron 25.0%
!!! TGATTTTGGCAAAAATTTAG+AGG - chr1_3:10387818-10387837 Msa0103250:intron 25.0%
! ATCAAAGATTGTTTCAGTTA+GGG + chr1_3:10388031-10388050 None:intergenic 25.0%
! ACAAGAAAATAGTCTCTAAA+TGG + chr1_3:10388256-10388275 None:intergenic 25.0%
! TAGATTCACACAAATAAAGT+GGG + chr1_3:10388313-10388332 None:intergenic 25.0%
! ATAGATTCACACAAATAAAG+TGG + chr1_3:10388314-10388333 None:intergenic 25.0%
!! AGTGAAGATAAATTTTATGG+CGG - chr1_3:10388420-10388439 Msa0103250:intron 25.0%
! TATCGACGTTATAAATACAA+TGG + chr1_3:10388503-10388522 None:intergenic 25.0%
! TGTATTTATAACGTCGATAA+TGG - chr1_3:10388504-10388523 Msa0103250:intron 25.0%
! GTATTTATAACGTCGATAAT+GGG - chr1_3:10388505-10388524 Msa0103250:intron 25.0%
! TCATTTATTTGAAAATCAGC+TGG - chr1_3:10388681-10388700 Msa0103250:intron 25.0%
! GATTGATAAAAGTAAAGAAC+AGG + chr1_3:10388717-10388736 None:intergenic 25.0%
!! ATAAGAAGATTTTCATGACT+TGG - chr1_3:10388762-10388781 Msa0103250:intron 25.0%
!!! GTAAATTCTTTTGACTTTCA+TGG - chr1_3:10388838-10388857 Msa0103250:intron 25.0%
! TCCTCTATTAAAGAATTCTT+CGG + chr1_3:10388930-10388949 None:intergenic 25.0%
! TAATTGGGTTAAATCAATGT+GGG + chr1_3:10389063-10389082 None:intergenic 25.0%
!! TTGTCATTTGGATTATATCT+TGG - chr1_3:10389159-10389178 Msa0103250:CDS 25.0%
!! TTAGAAGCAGATATACTTTT+AGG - chr1_3:10389213-10389232 Msa0103250:CDS 25.0%
!! AATAAATCTTTAAAAGGGAC+AGG - chr1_3:10389431-10389450 Msa0103250:intron 25.0%
!! ATTTTGTATAGTAACTGAGA+TGG + chr1_3:10389507-10389526 None:intergenic 25.0%
!! CAGTAATTGGTAATAAGTTA+GGG + chr1_3:10389585-10389604 None:intergenic 25.0%
!! ACAGTAATTGGTAATAAGTT+AGG + chr1_3:10389586-10389605 None:intergenic 25.0%
! TGGTTGTAAATAACAGTAAT+TGG + chr1_3:10389598-10389617 None:intergenic 25.0%
! ACTCCAATGATGATAATTAA+CGG + chr1_3:10389720-10389739 None:intergenic 25.0%
! TGTAACAAAGGTTTAATGTT+AGG - chr1_3:10389748-10389767 Msa0103250:intron 25.0%
! TCAAAATCAAGGAAGTAATA+AGG + chr1_3:10389821-10389840 None:intergenic 25.0%
!!! CAAAAGAAAAAGGTACTATT+TGG - chr1_3:10389975-10389994 Msa0103250:intron 25.0%
! TTTGGAAATATTAGAAAGTC+TGG - chr1_3:10390306-10390325 Msa0103250:intron 25.0%
! ATTATCTGCTATAAAAGTTG+AGG - chr1_3:10390368-10390387 Msa0103250:intron 25.0%
! GATATCACACAGTTAAAATT+TGG - chr1_3:10390766-10390785 Msa0103250:intron 25.0%
! ATTCGTCACAGTTAAAATTT+GGG - chr1_3:10390834-10390853 Msa0103250:intron 25.0%
! AGCTTCACTAAATAAATTTG+TGG - chr1_3:10390919-10390938 Msa0103250:exon 25.0%
! GCTTCACTAAATAAATTTGT+GGG - chr1_3:10390920-10390939 Msa0103250:exon 25.0%
! TGAATTGTGTAAGCAAAATT+TGG - chr1_3:10391093-10391112 Msa0103250:five_prime_UTR 25.0%
!!! TAAAACCATTCAGTTTGTTA+GGG - chr1_3:10391154-10391173 Msa0103250:five_prime_UTR 25.0%
GTTTGGTATGTGTAAAAGTT+TGG + chr1_3:10386595-10386614 None:intergenic 30.0%
!!! TATTTTTAGGGTGGTTTTGA+TGG - chr1_3:10386939-10386958 Msa0103250:three_prime_UTR 30.0%
!!! ATTTTTAGGGTGGTTTTGAT+GGG - chr1_3:10386940-10386959 Msa0103250:three_prime_UTR 30.0%
!! TGAATCTGTTTTTCATGATG+CGG - chr1_3:10387059-10387078 Msa0103250:CDS 30.0%
!!! AGCTTTTTCATAAGCTATCT+TGG + chr1_3:10387214-10387233 None:intergenic 30.0%
ATGCAAGATTGAGTAGTTTA+AGG - chr1_3:10387384-10387403 Msa0103250:intron 30.0%
TGCAAGATTGAGTAGTTTAA+GGG - chr1_3:10387385-10387404 Msa0103250:intron 30.0%
GATTGTTCATAACTCATAAG+TGG - chr1_3:10387459-10387478 Msa0103250:intron 30.0%
! AGATTTTTCATACGCTATCT+TGG + chr1_3:10387510-10387529 None:intergenic 30.0%
GTGAAGTTTAAAGACAAAAG+TGG - chr1_3:10387699-10387718 Msa0103250:intron 30.0%
TTTGGCAAAAATTTAGAGGT+CGG - chr1_3:10387822-10387841 Msa0103250:intron 30.0%
!! GCAATTTAGTCTTTTGCATT+AGG - chr1_3:10387899-10387918 Msa0103250:intron 30.0%
ACTACTTGAATCTAAGCATT+TGG + chr1_3:10387959-10387978 None:intergenic 30.0%
GATCAAAGATTGTTTCAGTT+AGG + chr1_3:10388032-10388051 None:intergenic 30.0%
!!! GACTATTTTCTTGTTTTCGT+TGG - chr1_3:10388262-10388281 Msa0103250:intron 30.0%
! TGGTTTTTATTAAAGGCTGT+TGG - chr1_3:10388445-10388464 Msa0103250:intron 30.0%
AATGTTATCTGCAGAACAAA+AGG + chr1_3:10388644-10388663 None:intergenic 30.0%
!!! TAGAGTTTCTTTTTTGGCAA+CGG + chr1_3:10388741-10388760 None:intergenic 30.0%
CTAAAAAACTTCATCACACA+AGG + chr1_3:10388810-10388829 None:intergenic 30.0%
CCTCTATTAAAGAATTCTTC+GGG + chr1_3:10388929-10388948 None:intergenic 30.0%
CTAATTGGGTTAAATCAATG+TGG + chr1_3:10389064-10389083 None:intergenic 30.0%
!! AGTGTTGCTTGGTTAATTTA+TGG - chr1_3:10389090-10389109 Msa0103250:intron 30.0%
TCATTTGGATTATATCTTGG+TGG - chr1_3:10389162-10389181 Msa0103250:CDS 30.0%
!! TTAATGGGGTATTGGTAAAA+AGG - chr1_3:10389363-10389382 Msa0103250:intron 30.0%
TAAGTTAGGGTAGAGATTAA+TGG + chr1_3:10389572-10389591 None:intergenic 30.0%
CAGTTAGGTGATTAAATGAT+TGG + chr1_3:10389618-10389637 None:intergenic 30.0%
! ATGATGATAATTAACGGACA+AGG + chr1_3:10389714-10389733 None:intergenic 30.0%
TGTCCGTTAATTATCATCAT+TGG - chr1_3:10389714-10389733 Msa0103250:intron 30.0%
! ATTACTTCCTTGATTTTGAG+TGG - chr1_3:10389822-10389841 Msa0103250:intron 30.0%
TCAATTTCCTATTACAGTAG+AGG + chr1_3:10389852-10389871 None:intergenic 30.0%
TCTACTGTAATAGGAAATTG+AGG - chr1_3:10389851-10389870 Msa0103250:intron 30.0%
TTTCGCTAAGCAAAAGAAAA+AGG - chr1_3:10389965-10389984 Msa0103250:intron 30.0%
TTGAGATGATTATGTCAAAC+TGG - chr1_3:10390002-10390021 Msa0103250:intron 30.0%
TGAGATGATTATGTCAAACT+GGG - chr1_3:10390003-10390022 Msa0103250:intron 30.0%
AGCTGACAAATGAATTTCTA+TGG - chr1_3:10390035-10390054 Msa0103250:intron 30.0%
AGAAGTTTGAACAGATAGTT+AGG + chr1_3:10390142-10390161 None:intergenic 30.0%
! ACTTCTGTAATTTTATCCTG+CGG - chr1_3:10390156-10390175 Msa0103250:intron 30.0%
!!! GCTATCAATTTGTTTTGTTC+AGG - chr1_3:10390390-10390409 Msa0103250:intron 30.0%
!!! AATTTGTTTTGTTCAGGCAT+CGG - chr1_3:10390396-10390415 Msa0103250:intron 30.0%
TCATCTATCTAATCAGTGAT+GGG - chr1_3:10390587-10390606 Msa0103250:CDS 30.0%
! ACACAGTTAAAATTTGGGTT+TGG - chr1_3:10390772-10390791 Msa0103250:intron 30.0%
ATCATGTCATATCTATGGAT+GGG + chr1_3:10390816-10390835 None:intergenic 30.0%
AATCATGTCATATCTATGGA+TGG + chr1_3:10390817-10390836 None:intergenic 30.0%
GATTCGTCACAGTTAAAATT+TGG - chr1_3:10390833-10390852 Msa0103250:intron 30.0%
AATGATTGAACCATGGTATT+AGG - chr1_3:10390973-10390992 Msa0103250:five_prime_UTR 30.0%
ATTCATGTTCAGAGAAATAG+AGG - chr1_3:10391019-10391038 Msa0103250:five_prime_UTR 30.0%
AGAGAAATAGAGGACATAAT+GGG - chr1_3:10391029-10391048 Msa0103250:five_prime_UTR 30.0%
! GTAAAACCATTCAGTTTGTT+AGG - chr1_3:10391153-10391172 Msa0103250:five_prime_UTR 30.0%
! TTGTTAGGGATAGAAAGTAT+TGG - chr1_3:10391168-10391187 Msa0103250:five_prime_UTR 30.0%
!! AGAAAGTATTGGTTCTCTAA+AGG - chr1_3:10391179-10391198 Msa0103250:five_prime_UTR 30.0%
GTATTATTTCGGGAAATCAA+AGG + chr1_3:10391243-10391262 None:intergenic 30.0%
GTTCTTATAAATAAGACCCG+AGG - chr1_3:10386463-10386482 Msa0103250:three_prime_UTR 35.0%
GTATGTGTAAAAGTTTGGCT+AGG + chr1_3:10386590-10386609 None:intergenic 35.0%
TTGTGAAACACGTTCTTGTT+TGG + chr1_3:10386637-10386656 None:intergenic 35.0%
GTGAGTAATACTCTCTTTGT+TGG + chr1_3:10386779-10386798 None:intergenic 35.0%
! AGAGTATTACTCACCTCTAA+TGG - chr1_3:10386785-10386804 Msa0103250:three_prime_UTR 35.0%
GCTTTCAATTTAGCCAAACA+AGG - chr1_3:10386830-10386849 Msa0103250:three_prime_UTR 35.0%
!! TTCAGTTACTGATTCTGTTG+TGG - chr1_3:10387005-10387024 Msa0103250:CDS 35.0%
ACGCTATCTTGGAAAACTTA+TGG + chr1_3:10387499-10387518 None:intergenic 35.0%
CAATGAAGATCAAATCGATC+CGG - chr1_3:10387989-10388008 Msa0103250:intron 35.0%
GGTTCAGCATATACTATACA+AGG + chr1_3:10388097-10388116 None:intergenic 35.0%
ATAATGCCTAACATGTTGAC+AGG + chr1_3:10388131-10388150 None:intergenic 35.0%
TCAACATGTTAGGCATTATG+AGG - chr1_3:10388132-10388151 Msa0103250:intron 35.0%
TAACTAATGTATGCACCTTC+AGG - chr1_3:10388161-10388180 Msa0103250:intron 35.0%
ATTCATCAAAACAGTCCTGA+AGG + chr1_3:10388179-10388198 None:intergenic 35.0%
TTCTTTGATCTGCTTGAGAA+TGG - chr1_3:10388286-10388305 Msa0103250:intron 35.0%
AATCTATGAGCTGAACGAAT+TGG - chr1_3:10388327-10388346 Msa0103250:intron 35.0%
ATCTATGAGCTGAACGAATT+GGG - chr1_3:10388328-10388347 Msa0103250:intron 35.0%
! GGATTCTATTCATCTGAAAC+AGG - chr1_3:10388349-10388368 Msa0103250:intron 35.0%
CTGTTAACTCAAGATGATCT+TGG + chr1_3:10388381-10388400 None:intergenic 35.0%
! AGATAAATTTTATGGCGGCA+TGG - chr1_3:10388425-10388444 Msa0103250:intron 35.0%
!!! AGAGTTTCTTTTTTGGCAAC+GGG + chr1_3:10388740-10388759 None:intergenic 35.0%
CCCGAAGAATTCTTTAATAG+AGG - chr1_3:10388926-10388945 Msa0103250:intron 35.0%
! TTATGTCCCACCATTTTATG+TGG - chr1_3:10389015-10389034 Msa0103250:intron 35.0%
! TATGTCCCACCATTTTATGT+GGG - chr1_3:10389016-10389035 Msa0103250:intron 35.0%
GAAATGGAACCCACATAAAA+TGG + chr1_3:10389028-10389047 None:intergenic 35.0%
CTTGGTTAATTTATGGCTCA+TGG - chr1_3:10389097-10389116 Msa0103250:CDS 35.0%
AGTTACTGCATTGTTTGTGT+TGG - chr1_3:10389130-10389149 Msa0103250:CDS 35.0%
GTTACTGCATTGTTTGTGTT+GGG - chr1_3:10389131-10389150 Msa0103250:CDS 35.0%
TGTTGGGTATACTTGTCATT+TGG - chr1_3:10389147-10389166 Msa0103250:CDS 35.0%
AATTATGAGAAGGATGACGA+TGG - chr1_3:10389320-10389339 Msa0103250:intron 35.0%
ATTATGAGAAGGATGACGAT+GGG - chr1_3:10389321-10389340 Msa0103250:intron 35.0%
CTAGCTAATTCTCTTCTCAA+GGG - chr1_3:10389466-10389485 Msa0103250:intron 35.0%
AACGAATAGAGTTGTCAGTT+AGG + chr1_3:10389633-10389652 None:intergenic 35.0%
AGGATTACCACTCAAAATCA+AGG + chr1_3:10389832-10389851 None:intergenic 35.0%
TGGTAATCCTCTACTGTAAT+AGG - chr1_3:10389842-10389861 Msa0103250:intron 35.0%
!! TCAAGTACTAGTATTGGCTT+CGG + chr1_3:10390115-10390134 None:intergenic 35.0%
GGAACTTCAAGTACTAGTAT+TGG + chr1_3:10390121-10390140 None:intergenic 35.0%
CAATAGCATTAACTCTGATC+TGG + chr1_3:10390441-10390460 None:intergenic 35.0%
AGAGTTAATGCTATTGCAAG+AGG - chr1_3:10390445-10390464 Msa0103250:intron 35.0%
! ATAATGGGAATTCATCTTCC+AGG + chr1_3:10390477-10390496 None:intergenic 35.0%
GGAAGATGAATTCCCATTAT+CGG - chr1_3:10390477-10390496 Msa0103250:intron 35.0%
GTCATCTATCTAATCAGTGA+TGG - chr1_3:10390586-10390605 Msa0103250:CDS 35.0%
GGAACAACCATATATGTTGA+TGG - chr1_3:10390625-10390644 Msa0103250:CDS 35.0%
GTGGAAGAACAATCACATAA+AGG + chr1_3:10390683-10390702 None:intergenic 35.0%
GACGAATCATGTCATATCTA+TGG + chr1_3:10390821-10390840 None:intergenic 35.0%
! TGTGTACATCTAAAGCCTAA+AGG + chr1_3:10390883-10390902 None:intergenic 35.0%
ATCCTCTAATGATTGAACCA+TGG - chr1_3:10390966-10390985 Msa0103250:five_prime_UTR 35.0%
TACCATGGTTCAATCATTAG+AGG + chr1_3:10390971-10390990 None:intergenic 35.0%
CAGAGAAATAGAGGACATAA+TGG - chr1_3:10391028-10391047 Msa0103250:five_prime_UTR 35.0%
TTCGTGTATTTGAGAGTCAT+AGG - chr1_3:10391056-10391075 Msa0103250:five_prime_UTR 35.0%
! TTGGTTATAAGAATGATGGG+TGG - chr1_3:10391112-10391131 Msa0103250:five_prime_UTR 35.0%
!! TTATAAGAATGATGGGTGGA+AGG - chr1_3:10391116-10391135 Msa0103250:five_prime_UTR 35.0%
TCTATCCCTAACAAACTGAA+TGG + chr1_3:10391162-10391181 None:intergenic 35.0%
GTAAAAGTTTGGCTAGGACA+TGG + chr1_3:10386584-10386603 None:intergenic 40.0%
GAATTCGTTTCAATGCTCAC+TGG + chr1_3:10386740-10386759 None:intergenic 40.0%
AGAAATATCGTCGCCATTAG+AGG + chr1_3:10386801-10386820 None:intergenic 40.0%
AATGGCGACGATATTTCTCA+TGG - chr1_3:10386803-10386822 Msa0103250:three_prime_UTR 40.0%
ATTTAGCCAAACAAGGATGC+AGG - chr1_3:10386837-10386856 Msa0103250:three_prime_UTR 40.0%
!! TACTGATTCTGTTGTGGAAG+TGG - chr1_3:10387011-10387030 Msa0103250:CDS 40.0%
TGTTGTGGAAGTGGTTGAAT+TGG - chr1_3:10387020-10387039 Msa0103250:CDS 40.0%
GGAAGTGGTTGAATTGGATA+TGG - chr1_3:10387026-10387045 Msa0103250:CDS 40.0%
TTCAAACAGGGCCTAAGTTT+AGG - chr1_3:10387344-10387363 Msa0103250:intron 40.0%
ATTCAAATGGGGCCTAAGTT+TGG - chr1_3:10387644-10387663 Msa0103250:intron 40.0%
! AAGACAAAAGTGGTTCTGCT+TGG - chr1_3:10387709-10387728 Msa0103250:intron 40.0%
! AGACAAAAGTGGTTCTGCTT+GGG - chr1_3:10387710-10387729 Msa0103250:intron 40.0%
! GGCGGCATGGTTTTTATTAA+AGG - chr1_3:10388438-10388457 Msa0103250:intron 40.0%
TATTAAAGGCTGTTGGCCAA+AGG - chr1_3:10388452-10388471 Msa0103250:intron 40.0%
!! TCGATAATGGGTTCAGAAAG+AGG - chr1_3:10388517-10388536 Msa0103250:intron 40.0%
!! CGATAATGGGTTCAGAAAGA+GGG - chr1_3:10388518-10388537 Msa0103250:intron 40.0%
!!! GAGTTTCTTTTTTGGCAACG+GGG + chr1_3:10388739-10388758 None:intergenic 40.0%
TCAAACACTCGCTCTCTTAT+TGG - chr1_3:10388981-10389000 Msa0103250:intron 40.0%
CAAACACTCGCTCTCTTATT+GGG - chr1_3:10388982-10389001 Msa0103250:intron 40.0%
TGGAACCCACATAAAATGGT+GGG + chr1_3:10389024-10389043 None:intergenic 40.0%
ATGGAACCCACATAAAATGG+TGG + chr1_3:10389025-10389044 None:intergenic 40.0%
GGGTTCCATTTCCAAAATGT+AGG - chr1_3:10389036-10389055 Msa0103250:intron 40.0%
!! TGGGTCCTACATTTTGGAAA+TGG + chr1_3:10389044-10389063 None:intergenic 40.0%
! TCAATGTGGGTCCTACATTT+TGG + chr1_3:10389050-10389069 None:intergenic 40.0%
GCAACACTCACTCTCTAATT+GGG + chr1_3:10389078-10389097 None:intergenic 40.0%
AGCAACACTCACTCTCTAAT+TGG + chr1_3:10389079-10389098 None:intergenic 40.0%
! ATTAGAGAGTGAGTGTTGCT+TGG - chr1_3:10389079-10389098 Msa0103250:intron 40.0%
!! TTTTAGGAGTTGTCTCTGCA+TGG - chr1_3:10389229-10389248 Msa0103250:CDS 40.0%
TGATATAGTGTCCGGGTTAA+TGG - chr1_3:10389347-10389366 Msa0103250:intron 40.0%
GATATAGTGTCCGGGTTAAT+GGG - chr1_3:10389348-10389367 Msa0103250:intron 40.0%
ATATAGTGTCCGGGTTAATG+GGG - chr1_3:10389349-10389368 Msa0103250:intron 40.0%
TTACCAATACCCCATTAACC+CGG + chr1_3:10389361-10389380 None:intergenic 40.0%
GCTAGCTAATTCTCTTCTCA+AGG - chr1_3:10389465-10389484 Msa0103250:intron 40.0%
AGTAACTGAGATGGTTGCAA+GGG + chr1_3:10389498-10389517 None:intergenic 40.0%
TAGTAACTGAGATGGTTGCA+AGG + chr1_3:10389499-10389518 None:intergenic 40.0%
GGAGAGTTCACAATAGAGAT+AGG + chr1_3:10389535-10389554 None:intergenic 40.0%
AATAAACAGTGCACTCTAGG+AGG + chr1_3:10389672-10389691 None:intergenic 40.0%
GAGAATAAACAGTGCACTCT+AGG + chr1_3:10389675-10389694 None:intergenic 40.0%
! GATAATTAACGGACAAGGTG+CGG + chr1_3:10389709-10389728 None:intergenic 40.0%
GAGTTGCATCGTTGTAACAA+AGG - chr1_3:10389736-10389755 Msa0103250:intron 40.0%
TCAAGGAAGTAATAAGGTGC+AGG + chr1_3:10389815-10389834 None:intergenic 40.0%
!! ACTAGTATTGGCTTCGGAAT+AGG + chr1_3:10390109-10390128 None:intergenic 40.0%
! CTGTAATTTTATCCTGCGGT+TGG - chr1_3:10390160-10390179 Msa0103250:intron 40.0%
! ATATTGACTAATCCAACCGC+AGG + chr1_3:10390175-10390194 None:intergenic 40.0%
CTATAACAGAGAAACTGCAC+AGG + chr1_3:10390216-10390235 None:intergenic 40.0%
AGATGAATTCCCATTATCGG+TGG - chr1_3:10390480-10390499 Msa0103250:intron 40.0%
GATGAATTCCCATTATCGGT+GGG - chr1_3:10390481-10390500 Msa0103250:intron 40.0%
CTGTGCTCCATCAACATATA+TGG + chr1_3:10390635-10390654 None:intergenic 40.0%
TTCACACCTGCATCCTTGTT+TGG + chr1_3:10386846-10386865 None:intergenic 45.0%
GAGTAGTTTAAGGGTCTGCT+TGG - chr1_3:10387394-10387413 Msa0103250:intron 45.0%
TCACTGTCACCACCAAACTT+AGG + chr1_3:10387659-10387678 None:intergenic 45.0%
TGTTGACAGGACTTGGCATT+TGG + chr1_3:10388118-10388137 None:intergenic 45.0%
CCTAACATGTTGACAGGACT+TGG + chr1_3:10388125-10388144 None:intergenic 45.0%
CCAAGTCCTGTCAACATGTT+AGG - chr1_3:10388122-10388141 Msa0103250:intron 45.0%
TGTTGAAGTTCCGCATCCTT+TGG + chr1_3:10388471-10388490 None:intergenic 45.0%
AAGGATGCGGAACTTCAACA+AGG - chr1_3:10388471-10388490 Msa0103250:intron 45.0%
AGGATGCGGAACTTCAACAA+GGG - chr1_3:10388472-10388491 Msa0103250:intron 45.0%
! TCAGAAAGAGGGCTTTATCC+AGG - chr1_3:10388529-10388548 Msa0103250:intron 45.0%
CTGGAGTTCAGCAGTTAGTT+CGG - chr1_3:10388578-10388597 Msa0103250:intron 45.0%
TGGAGTTCAGCAGTTAGTTC+GGG - chr1_3:10388579-10388598 Msa0103250:intron 45.0%
TAAGAGAGCGAGTGTTTGAG+AGG + chr1_3:10388980-10388999 None:intergenic 45.0%
!! ATGGGCACTGATATAGTGTC+CGG - chr1_3:10389339-10389358 Msa0103250:intron 45.0%
CTATGGCTGTGATATCGATG+TGG - chr1_3:10390052-10390071 Msa0103250:intron 45.0%
!!! TTTTGTTCAGGCATCGGCTA+TGG - chr1_3:10390402-10390421 Msa0103250:intron 45.0%
GGAATTCATCTTCCAGGTGA+AGG + chr1_3:10390471-10390490 None:intergenic 45.0%
AATTCCCATTATCGGTGGGA+AGG - chr1_3:10390485-10390504 Msa0103250:intron 45.0%
ATTCCCATTATCGGTGGGAA+GGG - chr1_3:10390486-10390505 Msa0103250:intron 45.0%
TTTCCCTTCCCACCGATAAT+GGG + chr1_3:10390492-10390511 None:intergenic 45.0%
ATTATCGGTGGGAAGGGAAA+GGG - chr1_3:10390492-10390511 Msa0103250:intron 45.0%
ACATCAAGCCATCTCTCAAG+TGG + chr1_3:10390544-10390563 None:intergenic 45.0%
ATGGAGCACAGTCTATAACC+AGG - chr1_3:10390644-10390663 Msa0103250:CDS 45.0%
CACATAAAGGAACGCATCCT+AGG + chr1_3:10390670-10390689 None:intergenic 45.0%
! CTTTGAAAAGTTCCTCGCTG+TGG + chr1_3:10390702-10390721 None:intergenic 45.0%
! CACAGCGAGGAACTTTTCAA+AGG - chr1_3:10390700-10390719 Msa0103250:CDS 45.0%
! CTAAAGGCACAGGCAAACAA+TGG + chr1_3:10390867-10390886 None:intergenic 45.0%
CATTGTTTGCCTGTGCCTTT+AGG - chr1_3:10390865-10390884 Msa0103250:CDS 45.0%
! CATCTAAAGCCTAAAGGCAC+AGG + chr1_3:10390877-10390896 None:intergenic 45.0%
TTCTACACACCTCTCTTCCA+GGG + chr1_3:10391000-10391019 None:intergenic 45.0%
ATTCTACACACCTCTCTTCC+AGG + chr1_3:10391001-10391020 None:intergenic 45.0%
TGAGAGTCATAGGAGAGAAG+TGG - chr1_3:10391066-10391085 Msa0103250:five_prime_UTR 45.0%
GCACGAGGAAGTGACTCAAA+GGG + chr1_3:10386530-10386549 None:intergenic 50.0%
!!! TAGGGTGGTTTTGATGGGAG+AGG - chr1_3:10386945-10386964 Msa0103250:three_prime_UTR 50.0%
CAAATGGGGCCTAAGTTTGG+TGG - chr1_3:10387647-10387666 Msa0103250:intron 50.0%
! TCGATCCGGAGTATCTGAGT+TGG - chr1_3:10388003-10388022 Msa0103250:intron 50.0%
GGGTTCCAACTCAGATACTC+CGG + chr1_3:10388011-10388030 None:intergenic 50.0%
ATGCGGAACTTCAACAAGGG+TGG - chr1_3:10388475-10388494 Msa0103250:intron 50.0%
TGCGGAACTTCAACAAGGGT+GGG - chr1_3:10388476-10388495 Msa0103250:intron 50.0%
TAACTGCTGAACTCCAGCCA+AGG + chr1_3:10388575-10388594 None:intergenic 50.0%
!! TGGGCACTGATATAGTGTCC+GGG - chr1_3:10389340-10389359 Msa0103250:intron 50.0%
TGTCCGGGTTAATGGGGTAT+TGG - chr1_3:10389355-10389374 Msa0103250:intron 50.0%
! AAACAGTGCACTCTAGGAGG+AGG + chr1_3:10389669-10389688 None:intergenic 50.0%
AGTGACTCTATCCTCCGAAG+TGG - chr1_3:10389785-10389804 Msa0103250:intron 50.0%
AAGGTGCAGGAAAGCCACTT+CGG + chr1_3:10389802-10389821 None:intergenic 50.0%
CAGAGAAACTGCACAGGACA+TGG + chr1_3:10390210-10390229 None:intergenic 50.0%
TATTGCAAGAGGCCTTCACC+TGG - chr1_3:10390456-10390475 Msa0103250:intron 50.0%
CTTTCCCTTCCCACCGATAA+TGG + chr1_3:10390493-10390512 None:intergenic 50.0%
CATTATCGGTGGGAAGGGAA+AGG - chr1_3:10390491-10390510 Msa0103250:intron 50.0%
AAGGGAAAGGGCAGAGAAGT+TGG - chr1_3:10390504-10390523 Msa0103250:intron 50.0%
!! GGCAGAGAAGTTGGTGAAAG+AGG - chr1_3:10390513-10390532 Msa0103250:intron 50.0%
GATGGGTCATGCTACATGAC+AGG - chr1_3:10390604-10390623 Msa0103250:CDS 50.0%
CACAGTCTATAACCAGGCCT+AGG - chr1_3:10390650-10390669 Msa0103250:CDS 50.0%
GTGATTGTTCTTCCACAGCG+AGG - chr1_3:10390687-10390706 Msa0103250:CDS 50.0%
GAACCATGGTATTAGGACCC+TGG - chr1_3:10390980-10390999 Msa0103250:five_prime_UTR 50.0%
CTTCCAGGGTCCTAATACCA+TGG + chr1_3:10390986-10391005 None:intergenic 50.0%
GTATTAGGACCCTGGAAGAG+AGG - chr1_3:10390988-10391007 Msa0103250:five_prime_UTR 50.0%
CGAGGAAGTGACTCAAAGGG+AGG + chr1_3:10386527-10386546 None:intergenic 55.0%
CGCACGAGGAAGTGACTCAA+AGG + chr1_3:10386531-10386550 None:intergenic 55.0%
AGGCTGTTGGCCAAAGGATG+CGG - chr1_3:10388458-10388477 Msa0103250:intron 55.0%
TGCTGCATATGCCTCAGCCT+TGG - chr1_3:10388555-10388574 Msa0103250:intron 55.0%
!! CAGGCATCGGCTATGGAGAT+AGG - chr1_3:10390409-10390428 Msa0103250:intron 55.0%
AGGCAGCACCACTTGAGAGA+TGG - chr1_3:10390533-10390552 Msa0103250:intron 55.0%
AAAGGAACGCATCCTAGGCC+TGG + chr1_3:10390665-10390684 None:intergenic 55.0%
GAGGCATATGCAGCAGCTCC+TGG + chr1_3:10388550-10388569 None:intergenic 60.0%
GCATATGCCTCAGCCTTGGC+TGG - chr1_3:10388559-10388578 Msa0103250:intron 60.0%
CTGAACTCCAGCCAAGGCTG+AGG + chr1_3:10388569-10388588 None:intergenic 60.0%
TCTAGGAGGAGGAGGAGGAG+GGG + chr1_3:10389658-10389677 None:intergenic 60.0%
! CTCTAGGAGGAGGAGGAGGA+GGG + chr1_3:10389659-10389678 None:intergenic 60.0%
! ACTCTAGGAGGAGGAGGAGG+AGG + chr1_3:10389660-10389679 None:intergenic 60.0%
! TGCACTCTAGGAGGAGGAGG+AGG + chr1_3:10389663-10389682 None:intergenic 60.0%
! CAGTGCACTCTAGGAGGAGG+AGG + chr1_3:10389666-10389685 None:intergenic 60.0%
GTGCAGGAAAGCCACTTCGG+AGG + chr1_3:10389799-10389818 None:intergenic 60.0%
AGGCATGTCGCTGTCGCACG+AGG + chr1_3:10386545-10386564 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 10386412 10391282 10386412 ID=Msa0103250;Name=Msa0103250
chr1_3 mRNA 10386412 10391282 10386412 ID=Msa0103250-mRNA-1;Parent=Msa0103250;Name=Msa0103250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=355|1|1|1|1|1|4|592|265
chr1_3 exon 10386412 10387282 10386412 ID=Msa0103250-mRNA-1:exon:4348;Parent=Msa0103250-mRNA-1
chr1_3 exon 10389094 10389323 10389094 ID=Msa0103250-mRNA-1:exon:4347;Parent=Msa0103250-mRNA-1
chr1_3 exon 10390550 10390746 10390550 ID=Msa0103250-mRNA-1:exon:4346;Parent=Msa0103250-mRNA-1
chr1_3 exon 10390836 10391282 10390836 ID=Msa0103250-mRNA-1:exon:4345;Parent=Msa0103250-mRNA-1
chr1_3 five_prime_UTR 10390928 10391282 10390928 ID=Msa0103250-mRNA-1:five_prime_utr;Parent=Msa0103250-mRNA-1
chr1_3 CDS 10390836 10390927 10390836 ID=Msa0103250-mRNA-1:cds;Parent=Msa0103250-mRNA-1
chr1_3 CDS 10390550 10390746 10390550 ID=Msa0103250-mRNA-1:cds;Parent=Msa0103250-mRNA-1
chr1_3 CDS 10389094 10389323 10389094 ID=Msa0103250-mRNA-1:cds;Parent=Msa0103250-mRNA-1
chr1_3 CDS 10387004 10387282 10387004 ID=Msa0103250-mRNA-1:cds;Parent=Msa0103250-mRNA-1
chr1_3 three_prime_UTR 10386412 10387003 10386412 ID=Msa0103250-mRNA-1:three_prime_utr;Parent=Msa0103250-mRNA-1
Gene Sequence

>Msa0103250

ATGACGAATCCAACAAAGAGAGTATTACTCACCTCTAATGGCGACGATATTTCTCATGGCATTGCTTTCAATTTAGCCAAACAAGGATGCAGGGTGGTTTTGATGGGAGAGGCAAGTAGCTTACGAAGTATTGCACGAAAAATAACGGATTCAGTTACTGATTCTGTTGTGGAAGTGGTTGAATTGGATATGGAGAATGAAAATGAATCTGTTTTTCATGATGCGGTTGATAAAGCTTGTAAAATTTTGGGGAAATTGGATGCTTTTGTTAATTGTTATTCTTATGAAGGAAAGATCCAAGATCATCTTGAGTTAACAGAGAGTGAGTACAAAAAAATAGTGAAGATAAATTTTATGGCGGCATGGTTTTTATTAAAGGCTGTTGGCCAAAGGATGCGGAACTTCAACAAGGGTGGGTCCATTGTATTTATAACGTCGATAATGGGTTCAGAAAGAGGGCTTTATCCAGGAGCTGCTGCATATGCCTCAGCCTTGGCTGGAGTTCAGCAGTTAGTTCGGGCATCGGCTATGGAGATAGGTAAGTACCAGATCAGAGTTAATGCTATTGCAAGAGGCCTTCACCTGGAAGATGAATTCCCATTATCGGTGGGAAGGGAAAGGGCAGAGAAGTTGGTGAAAGAGGCAGCACCACTTGAGAGATGGCTTGATGTTAAGAATGATCTAGCTTCTACAGTCATCTATCTAATCAGTGATGGGTCATGCTACATGACAGGAACAACCATATATGTTGATGGAGCACAGTCTATAACCAGGCCTAGGATGCGTTCCTTTATGTGA

Protein sequence

>Msa0103250

MTNPTKRVLLTSNGDDISHGIAFNLAKQGCRVVLMGEASSLRSIARKITDSVTDSVVEVVELDMENENESVFHDAVDKACKILGKLDAFVNCYSYEGKIQDHLELTESEYKKIVKINFMAAWFLLKAVGQRMRNFNKGGSIVFITSIMGSERGLYPGAAAYASALAGVQQLVRASAMEIGKYQIRVNAIARGLHLEDEFPLSVGRERAEKLVKEAAPLERWLDVKNDLASTVIYLISDGSCYMTGTTIYVDGAQSITRPRMRSFM*