AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1244610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244610 MtrunA17_Chr8g0360291 98.450 129 2 0 1 129 1 129 5.05e-92 261
Msa1244610 MtrunA17_Chr2g0316921 71.094 128 37 0 1 128 1 128 5.43e-64 191
Msa1244610 MtrunA17_Chr4g0046851 57.031 128 53 1 1 128 1 126 1.58e-48 151
Msa1244610 MtrunA17_Chr3g0113291 52.344 128 61 0 1 128 24 151 6.38e-46 145
Msa1244610 MtrunA17_Chr7g0242231 57.273 110 47 0 1 110 1 110 1.94e-44 141
Msa1244610 MtrunA17_Chr5g0436971 59.091 110 45 0 1 110 1 110 4.94e-44 140
Msa1244610 MtrunA17_Chr2g0316891 70.588 85 25 0 44 128 42 126 1.57e-39 129
Msa1244610 MtrunA17_Chr1g0188931 45.361 97 53 0 12 108 8 104 1.24e-31 108
Msa1244610 MtrunA17_Chr3g0127211 47.423 97 51 0 12 108 8 104 2.00e-31 107
Msa1244610 MtrunA17_Chr8g0346501 42.857 98 56 0 9 106 5 102 2.03e-26 95.1
Msa1244610 MtrunA17_Chr1g0188951 42.623 61 35 0 48 108 1 61 4.46e-15 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1244610 AT5G53940.1 69.531 128 39 0 1 128 1 128 1.02e-61 185
Msa1244610 AT2G40110.1 55.814 129 56 1 1 128 1 129 4.46e-47 148
Msa1244610 AT3G08990.2 51.562 128 62 0 1 128 1 128 1.49e-46 147
Msa1244610 AT3G08990.1 51.562 128 62 0 1 128 1 128 1.49e-46 147
Msa1244610 AT3G08990.3 51.562 128 62 0 1 128 1 128 1.49e-46 147
Msa1244610 AT2G40110.2 64.706 102 36 0 1 102 1 102 1.63e-46 146
Msa1244610 AT3G55890.4 58.095 105 44 0 1 105 1 105 7.58e-42 135
Msa1244610 AT3G55890.1 58.095 105 44 0 1 105 1 105 7.58e-42 135
Msa1244610 AT3G55890.3 59.406 101 41 0 1 101 1 101 2.43e-41 133
Msa1244610 AT3G55890.2 59.406 101 41 0 1 101 1 101 2.43e-41 133
Msa1244610 AT3G11230.1 50.781 128 63 0 1 128 1 128 4.92e-41 133
Msa1244610 AT3G11230.2 50.781 128 63 0 1 128 34 161 1.89e-40 132
Msa1244610 AT3G11230.4 57.843 102 43 0 1 102 1 102 1.62e-39 128
Msa1244610 AT3G11230.3 57.843 102 43 0 1 102 34 135 2.98e-39 129
Msa1244610 AT2G40110.4 61.446 83 32 0 1 83 1 83 2.07e-35 117
Msa1244610 AT2G40110.3 61.446 83 32 0 1 83 1 83 2.07e-35 117
Msa1244610 AT4G27745.2 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1244610 AT4G27745.3 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1244610 AT4G27745.1 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1244610 AT4G27745.4 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1244610 AT4G27740.1 39.130 92 56 0 14 105 10 101 6.77e-23 86.3

Find 42 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAAGAGCGATGCTTTC+AGG 0.190195 8_2:+33287089 Msa1244610:CDS
ACTTTCCCTCTTTGTACTTT+TGG 0.194241 8_2:-33287324 None:intergenic
ACTTCCTCAAGATTCATAAA+AGG 0.314442 8_2:-33286191 None:intergenic
TCCACTGAATTCTGTGTTGA+AGG 0.319590 8_2:+33287487 Msa1244610:CDS
GAGCTGGATGGCAGAGTTTA+CGG 0.331875 8_2:+33286267 Msa1244610:CDS
TGTCGCTGCGGTCAGATAAT+TGG 0.336845 8_2:+33287140 Msa1244610:CDS
AAGGAAATAGCAAAACAAAT+TGG 0.377402 8_2:-33287643 None:intergenic
GAGTGATACTGAAGATGATT+AGG 0.429995 8_2:+33287522 Msa1244610:CDS
GGAAGGATCGTTGATGAAAT+CGG 0.431542 8_2:+33287460 Msa1244610:CDS
GAGCGGTGACATCAATCAAA+TGG 0.436224 8_2:+33286227 Msa1244610:exon
ATACTTACACATTATTGAAA+AGG 0.455887 8_2:-33286472 None:intergenic
TTTCCACTGATCTCATCTCC+AGG 0.460967 8_2:+33286319 Msa1244610:CDS
GAAAAGCCAAAAGTACAAAG+AGG 0.465104 8_2:+33287318 Msa1244610:CDS
AGGGAAAGTTTGTTCTTGAA+AGG 0.474035 8_2:+33287338 Msa1244610:CDS
TGGAAAGAGCGATGCTTTCA+GGG 0.476055 8_2:+33287090 Msa1244610:CDS
AGCGGTGACATCAATCAAAT+GGG 0.480919 8_2:+33286228 Msa1244610:exon
AGATTTGGCCCAGGTGGCTA+AGG 0.481908 8_2:+33287813 Msa1244610:intron
AGATTAAGATGAACCAGGGC+AGG 0.485254 8_2:-33286155 None:intergenic
TGTGTAATTCGTGTATCAAA+AGG 0.485848 8_2:+33287716 Msa1244610:three_prime_UTR
GTCCCTGTGTGAAAAGAGCC+AGG 0.497570 8_2:-33287863 None:intergenic
GGCCCAGGTGGCTAAGGAGA+TGG 0.535800 8_2:+33287819 Msa1244610:intron
AATAGTAATACTCCCTGCCC+TGG 0.535884 8_2:+33286142 None:intergenic
AAGTGAAGAAGAAGAGTGAG+CGG 0.553078 8_2:+33286210 Msa1244610:five_prime_UTR
ATTCGTGTATCAAAAGGAGA+TGG 0.569514 8_2:+33287722 Msa1244610:three_prime_UTR
AAAAGCCAAAAGTACAAAGA+GGG 0.574439 8_2:+33287319 Msa1244610:CDS
TTCCACTGATCTCATCTCCA+GGG 0.580481 8_2:+33286320 Msa1244610:CDS
GCTGCGGTCAGATAATTGGC+TGG 0.590004 8_2:+33287144 Msa1244610:CDS
CACAGTGTGAACTTCACTAG+TGG 0.591434 8_2:+33287059 Msa1244610:intron
GATTAAGATGAACCAGGGCA+GGG 0.595551 8_2:-33286154 None:intergenic
CTTCACTAGTGGAGAAGTGG+TGG 0.595583 8_2:+33287070 Msa1244610:CDS
GAAAGAGATTAAGATGAACC+AGG 0.595956 8_2:-33286160 None:intergenic
TCTCTCATAGGAAACTGTGC+AGG 0.598241 8_2:+33287294 Msa1244610:intron
TGAGATCAGTGGAAAGAGCA+AGG 0.604806 8_2:-33286311 None:intergenic
GCCTTCAACACAGAATTCAG+TGG 0.633670 8_2:-33287488 None:intergenic
AAAGAGATTAAGATGAACCA+GGG 0.646469 8_2:-33286159 None:intergenic
TCAAAAGGAGATGGAACCGT+CGG 0.652889 8_2:+33287731 Msa1244610:three_prime_UTR
TACCCTGGAGATGAGATCAG+TGG 0.654916 8_2:-33286322 None:intergenic
GAACTTCACTAGTGGAGAAG+TGG 0.657506 8_2:+33287067 Msa1244610:CDS
GGAACCGTCGGTTTCCTCTG+AGG 0.659947 8_2:+33287743 Msa1244610:three_prime_UTR
GTGACCTCAGAGGAAACCGA+CGG 0.704659 8_2:-33287747 None:intergenic
GCGGTGACATCAATCAAATG+GGG 0.714397 8_2:+33286229 Msa1244610:exon
TTGCAACCAAGTGACCTCAG+AGG 0.717075 8_2:-33287757 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTTTTGGTTAATT+AGG + chr8_2:33286367-33286386 Msa1244610:intron 15.0%
!! ATACAATCTAATTCTAATAT+CGG - chr8_2:33286953-33286972 None:intergenic 15.0%
!!! CAAATACAAAAGATTTTAAT+AGG - chr8_2:33287548-33287567 None:intergenic 15.0%
!!! TTAAAATCTTTTGTATTTGT+TGG + chr8_2:33287549-33287568 Msa1244610:three_prime_UTR 15.0%
!!! TTTTATCTTCTAATACTAAA+AGG - chr8_2:33287665-33287684 None:intergenic 15.0%
!!! TTCAATTTTTTTGGTTAATT+AGG + chr8_2:33286367-33286386 Msa1244610:intron 15.0%
!! ATACAATCTAATTCTAATAT+CGG - chr8_2:33286953-33286972 None:intergenic 15.0%
!!! CAAATACAAAAGATTTTAAT+AGG - chr8_2:33287548-33287567 None:intergenic 15.0%
!!! TTAAAATCTTTTGTATTTGT+TGG + chr8_2:33287549-33287568 Msa1244610:three_prime_UTR 15.0%
!!! TTTTATCTTCTAATACTAAA+AGG - chr8_2:33287665-33287684 None:intergenic 15.0%
!! TTAACCAAAAAAATTGAAGA+AGG - chr8_2:33286365-33286384 None:intergenic 20.0%
!! ATACTTACACATTATTGAAA+AGG - chr8_2:33286475-33286494 None:intergenic 20.0%
!!! GACAGTTTTATTATCAATAA+TGG + chr8_2:33286562-33286581 Msa1244610:intron 20.0%
!! TCAATAATGGTATTATAGTA+AGG + chr8_2:33286575-33286594 Msa1244610:intron 20.0%
!!! AATGCAATTTTATTTTCAAC+TGG - chr8_2:33286631-33286650 None:intergenic 20.0%
!! TTGTATGTTAAGTTATATAC+TGG + chr8_2:33286750-33286769 Msa1244610:intron 20.0%
!! TGTATGTTAAGTTATATACT+GGG + chr8_2:33286751-33286770 Msa1244610:intron 20.0%
!! TAGATTTGTAAAAATATGAG+AGG - chr8_2:33287192-33287211 None:intergenic 20.0%
!! TTAACCAAAAAAATTGAAGA+AGG - chr8_2:33286365-33286384 None:intergenic 20.0%
!! ATACTTACACATTATTGAAA+AGG - chr8_2:33286475-33286494 None:intergenic 20.0%
!!! GACAGTTTTATTATCAATAA+TGG + chr8_2:33286562-33286581 Msa1244610:intron 20.0%
!! TCAATAATGGTATTATAGTA+AGG + chr8_2:33286575-33286594 Msa1244610:intron 20.0%
!!! AATGCAATTTTATTTTCAAC+TGG - chr8_2:33286631-33286650 None:intergenic 20.0%
!! TTGTATGTTAAGTTATATAC+TGG + chr8_2:33286750-33286769 Msa1244610:intron 20.0%
!! TGTATGTTAAGTTATATACT+GGG + chr8_2:33286751-33286770 Msa1244610:intron 20.0%
!! TAGATTTGTAAAAATATGAG+AGG - chr8_2:33287192-33287211 None:intergenic 20.0%
!!! TGATCCTTCTTCAATTTTTT+TGG + chr8_2:33286358-33286377 Msa1244610:intron 25.0%
! AGAAGAAAAGCAAACAATAA+GGG - chr8_2:33286420-33286439 None:intergenic 25.0%
!!! CATTTAAGATTTGTTACTGA+TGG - chr8_2:33286525-33286544 None:intergenic 25.0%
! GATAAGTATTTCAACATTCA+GGG - chr8_2:33286876-33286895 None:intergenic 25.0%
! AGATAAGTATTTCAACATTC+AGG - chr8_2:33286877-33286896 None:intergenic 25.0%
! TTTGTAAAAATATGAGAGGA+TGG - chr8_2:33287188-33287207 None:intergenic 25.0%
! ATCAGTAAAAACACACATTA+AGG - chr8_2:33287410-33287429 None:intergenic 25.0%
! AAGGAAATAGCAAAACAAAT+TGG - chr8_2:33287646-33287665 None:intergenic 25.0%
!!! TGATCCTTCTTCAATTTTTT+TGG + chr8_2:33286358-33286377 Msa1244610:intron 25.0%
! AGAAGAAAAGCAAACAATAA+GGG - chr8_2:33286420-33286439 None:intergenic 25.0%
!!! CATTTAAGATTTGTTACTGA+TGG - chr8_2:33286525-33286544 None:intergenic 25.0%
! GATAAGTATTTCAACATTCA+GGG - chr8_2:33286876-33286895 None:intergenic 25.0%
! AGATAAGTATTTCAACATTC+AGG - chr8_2:33286877-33286896 None:intergenic 25.0%
! TTTGTAAAAATATGAGAGGA+TGG - chr8_2:33287188-33287207 None:intergenic 25.0%
! ATCAGTAAAAACACACATTA+AGG - chr8_2:33287410-33287429 None:intergenic 25.0%
! AAGGAAATAGCAAAACAAAT+TGG - chr8_2:33287646-33287665 None:intergenic 25.0%
AAAGAGATTAAGATGAACCA+GGG - chr8_2:33286162-33286181 None:intergenic 30.0%
! TGTACCTTTTATGAATCTTG+AGG + chr8_2:33286187-33286206 Msa1244610:five_prime_UTR 30.0%
ACTTCCTCAAGATTCATAAA+AGG - chr8_2:33286194-33286213 None:intergenic 30.0%
AAACAATAAGGGTTAACGAA+TGG - chr8_2:33286409-33286428 None:intergenic 30.0%
GAGAAGAAAAGCAAACAATA+AGG - chr8_2:33286421-33286440 None:intergenic 30.0%
!! TATTGTTTGCTTTTCTTCTC+AGG + chr8_2:33286421-33286440 Msa1244610:intron 30.0%
!! ATTGTTTGCTTTTCTTCTCA+GGG + chr8_2:33286422-33286441 Msa1244610:intron 30.0%
!! TTGTTACTGATGGATTAACA+AGG - chr8_2:33286515-33286534 None:intergenic 30.0%
! TTTAGAAGGATCAAAAGTAC+TGG - chr8_2:33287266-33287285 None:intergenic 30.0%
TAAAATTGCATCTCTCTCAT+AGG + chr8_2:33287282-33287301 Msa1244610:intron 30.0%
! AAAAGCCAAAAGTACAAAGA+GGG + chr8_2:33287319-33287338 Msa1244610:CDS 30.0%
!! TCTTTTGTATTTGTTGGATC+AGG + chr8_2:33287555-33287574 Msa1244610:three_prime_UTR 30.0%
! TCTGATTCTGAACATTTTCA+AGG - chr8_2:33287622-33287641 None:intergenic 30.0%
TGTGTAATTCGTGTATCAAA+AGG + chr8_2:33287716-33287735 Msa1244610:three_prime_UTR 30.0%
AAAGAGATTAAGATGAACCA+GGG - chr8_2:33286162-33286181 None:intergenic 30.0%
! TGTACCTTTTATGAATCTTG+AGG + chr8_2:33286187-33286206 Msa1244610:five_prime_UTR 30.0%
ACTTCCTCAAGATTCATAAA+AGG - chr8_2:33286194-33286213 None:intergenic 30.0%
AAACAATAAGGGTTAACGAA+TGG - chr8_2:33286409-33286428 None:intergenic 30.0%
GAGAAGAAAAGCAAACAATA+AGG - chr8_2:33286421-33286440 None:intergenic 30.0%
!! TATTGTTTGCTTTTCTTCTC+AGG + chr8_2:33286421-33286440 Msa1244610:intron 30.0%
!! ATTGTTTGCTTTTCTTCTCA+GGG + chr8_2:33286422-33286441 Msa1244610:intron 30.0%
!! TTGTTACTGATGGATTAACA+AGG - chr8_2:33286515-33286534 None:intergenic 30.0%
! TTTAGAAGGATCAAAAGTAC+TGG - chr8_2:33287266-33287285 None:intergenic 30.0%
TAAAATTGCATCTCTCTCAT+AGG + chr8_2:33287282-33287301 Msa1244610:intron 30.0%
! AAAAGCCAAAAGTACAAAGA+GGG + chr8_2:33287319-33287338 Msa1244610:CDS 30.0%
!! TCTTTTGTATTTGTTGGATC+AGG + chr8_2:33287555-33287574 Msa1244610:three_prime_UTR 30.0%
! TCTGATTCTGAACATTTTCA+AGG - chr8_2:33287622-33287641 None:intergenic 30.0%
TGTGTAATTCGTGTATCAAA+AGG + chr8_2:33287716-33287735 Msa1244610:three_prime_UTR 30.0%
GAAAGAGATTAAGATGAACC+AGG - chr8_2:33286163-33286182 None:intergenic 35.0%
CATGATATGATATGATACCC+TGG - chr8_2:33286340-33286359 None:intergenic 35.0%
! CAGGGATTTTATTGTCATAG+AGG + chr8_2:33286440-33286459 Msa1244610:intron 35.0%
CTCAACAAATTGAAATGCCT+CGG - chr8_2:33286717-33286736 None:intergenic 35.0%
TATACTGGGATTGTTGTAAC+TGG + chr8_2:33286765-33286784 Msa1244610:intron 35.0%
! TGTCAGTTTTCATGGTTGAA+TGG + chr8_2:33286794-33286813 Msa1244610:intron 35.0%
! AGTTTTCATGGTTGAATGGT+GGG + chr8_2:33286798-33286817 Msa1244610:intron 35.0%
!! GATATATTTTGTTGTCGCTG+CGG + chr8_2:33287128-33287147 Msa1244610:CDS 35.0%
GTAAAAATATGAGAGGATGG+TGG - chr8_2:33287185-33287204 None:intergenic 35.0%
TATCTGCAAACTAGTGTTGT+AGG + chr8_2:33287212-33287231 Msa1244610:intron 35.0%
! GAGAGAGATGCAATTTTAGA+AGG - chr8_2:33287280-33287299 None:intergenic 35.0%
! GAAAAGCCAAAAGTACAAAG+AGG + chr8_2:33287318-33287337 Msa1244610:CDS 35.0%
! ACTTTCCCTCTTTGTACTTT+TGG - chr8_2:33287327-33287346 None:intergenic 35.0%
! AGGGAAAGTTTGTTCTTGAA+AGG + chr8_2:33287338-33287357 Msa1244610:CDS 35.0%
GAGTGATACTGAAGATGATT+AGG + chr8_2:33287522-33287541 Msa1244610:CDS 35.0%
ATTCGTGTATCAAAAGGAGA+TGG + chr8_2:33287722-33287741 Msa1244610:three_prime_UTR 35.0%
AGATTCACTCTTTAACGTTG+TGG + chr8_2:33287779-33287798 Msa1244610:intron 35.0%
! CAGGTCTTGTCCAAAAAAAA+CGG - chr8_2:33287847-33287866 None:intergenic 35.0%
GAAAGAGATTAAGATGAACC+AGG - chr8_2:33286163-33286182 None:intergenic 35.0%
CATGATATGATATGATACCC+TGG - chr8_2:33286340-33286359 None:intergenic 35.0%
! CAGGGATTTTATTGTCATAG+AGG + chr8_2:33286440-33286459 Msa1244610:intron 35.0%
CTCAACAAATTGAAATGCCT+CGG - chr8_2:33286717-33286736 None:intergenic 35.0%
TATACTGGGATTGTTGTAAC+TGG + chr8_2:33286765-33286784 Msa1244610:intron 35.0%
! TGTCAGTTTTCATGGTTGAA+TGG + chr8_2:33286794-33286813 Msa1244610:intron 35.0%
! AGTTTTCATGGTTGAATGGT+GGG + chr8_2:33286798-33286817 Msa1244610:intron 35.0%
!! GATATATTTTGTTGTCGCTG+CGG + chr8_2:33287128-33287147 Msa1244610:CDS 35.0%
GTAAAAATATGAGAGGATGG+TGG - chr8_2:33287185-33287204 None:intergenic 35.0%
TATCTGCAAACTAGTGTTGT+AGG + chr8_2:33287212-33287231 Msa1244610:intron 35.0%
! GAGAGAGATGCAATTTTAGA+AGG - chr8_2:33287280-33287299 None:intergenic 35.0%
! GAAAAGCCAAAAGTACAAAG+AGG + chr8_2:33287318-33287337 Msa1244610:CDS 35.0%
! ACTTTCCCTCTTTGTACTTT+TGG - chr8_2:33287327-33287346 None:intergenic 35.0%
! AGGGAAAGTTTGTTCTTGAA+AGG + chr8_2:33287338-33287357 Msa1244610:CDS 35.0%
GAGTGATACTGAAGATGATT+AGG + chr8_2:33287522-33287541 Msa1244610:CDS 35.0%
ATTCGTGTATCAAAAGGAGA+TGG + chr8_2:33287722-33287741 Msa1244610:three_prime_UTR 35.0%
AGATTCACTCTTTAACGTTG+TGG + chr8_2:33287779-33287798 Msa1244610:intron 35.0%
! CAGGTCTTGTCCAAAAAAAA+CGG - chr8_2:33287847-33287866 None:intergenic 35.0%
AAGTGAAGAAGAAGAGTGAG+CGG + chr8_2:33286210-33286229 Msa1244610:five_prime_UTR 40.0%
AGCGGTGACATCAATCAAAT+GGG + chr8_2:33286228-33286247 Msa1244610:exon 40.0%
! GAGAATTTTTGCAGTTGAGC+TGG + chr8_2:33286251-33286270 Msa1244610:CDS 40.0%
! ATTTTTGCAGTTGAGCTGGA+TGG + chr8_2:33286255-33286274 Msa1244610:CDS 40.0%
CTAATACCAAACTAATGCCG+AGG + chr8_2:33286697-33286716 Msa1244610:intron 40.0%
! CAGTTTTCATGGTTGAATGG+TGG + chr8_2:33286797-33286816 Msa1244610:intron 40.0%
ACAAAACTCCCACATACGTA+AGG - chr8_2:33286837-33286856 None:intergenic 40.0%
!! TATGTGGGAGTTTTGTACAC+CGG + chr8_2:33286841-33286860 Msa1244610:intron 40.0%
! CATGTGCATGCTTGTGTTTT+TGG + chr8_2:33287029-33287048 Msa1244610:intron 40.0%
CATGCTTGTCCATTTAACAG+AGG + chr8_2:33287439-33287458 Msa1244610:intron 40.0%
CTTGTCCATTTAACAGAGGA+AGG + chr8_2:33287443-33287462 Msa1244610:intron 40.0%
ACGATCCTTCCTCTGTTAAA+TGG - chr8_2:33287451-33287470 None:intergenic 40.0%
! GGAAGGATCGTTGATGAAAT+CGG + chr8_2:33287460-33287479 Msa1244610:CDS 40.0%
TCCACTGAATTCTGTGTTGA+AGG + chr8_2:33287487-33287506 Msa1244610:CDS 40.0%
! GTGGTTCTCGATTTGAGATT+TGG + chr8_2:33287798-33287817 Msa1244610:intron 40.0%
!!! GGAGATGGAACCGTTTTTTT+TGG + chr8_2:33287834-33287853 Msa1244610:three_prime_UTR 40.0%
!!! CGTTTTTTTTGGACAAGACC+TGG + chr8_2:33287845-33287864 Msa1244610:three_prime_UTR 40.0%
AAGTGAAGAAGAAGAGTGAG+CGG + chr8_2:33286210-33286229 Msa1244610:five_prime_UTR 40.0%
AGCGGTGACATCAATCAAAT+GGG + chr8_2:33286228-33286247 Msa1244610:exon 40.0%
! GAGAATTTTTGCAGTTGAGC+TGG + chr8_2:33286251-33286270 Msa1244610:CDS 40.0%
! ATTTTTGCAGTTGAGCTGGA+TGG + chr8_2:33286255-33286274 Msa1244610:CDS 40.0%
CTAATACCAAACTAATGCCG+AGG + chr8_2:33286697-33286716 Msa1244610:intron 40.0%
! CAGTTTTCATGGTTGAATGG+TGG + chr8_2:33286797-33286816 Msa1244610:intron 40.0%
ACAAAACTCCCACATACGTA+AGG - chr8_2:33286837-33286856 None:intergenic 40.0%
!! TATGTGGGAGTTTTGTACAC+CGG + chr8_2:33286841-33286860 Msa1244610:intron 40.0%
! CATGTGCATGCTTGTGTTTT+TGG + chr8_2:33287029-33287048 Msa1244610:intron 40.0%
CATGCTTGTCCATTTAACAG+AGG + chr8_2:33287439-33287458 Msa1244610:intron 40.0%
CTTGTCCATTTAACAGAGGA+AGG + chr8_2:33287443-33287462 Msa1244610:intron 40.0%
ACGATCCTTCCTCTGTTAAA+TGG - chr8_2:33287451-33287470 None:intergenic 40.0%
! GGAAGGATCGTTGATGAAAT+CGG + chr8_2:33287460-33287479 Msa1244610:CDS 40.0%
TCCACTGAATTCTGTGTTGA+AGG + chr8_2:33287487-33287506 Msa1244610:CDS 40.0%
! GTGGTTCTCGATTTGAGATT+TGG + chr8_2:33287798-33287817 Msa1244610:intron 40.0%
!!! GGAGATGGAACCGTTTTTTT+TGG + chr8_2:33287834-33287853 Msa1244610:three_prime_UTR 40.0%
!!! CGTTTTTTTTGGACAAGACC+TGG + chr8_2:33287845-33287864 Msa1244610:three_prime_UTR 40.0%
GATTAAGATGAACCAGGGCA+GGG - chr8_2:33286157-33286176 None:intergenic 45.0%
AGATTAAGATGAACCAGGGC+AGG - chr8_2:33286158-33286177 None:intergenic 45.0%
GAGCGGTGACATCAATCAAA+TGG + chr8_2:33286227-33286246 Msa1244610:exon 45.0%
GCGGTGACATCAATCAAATG+GGG + chr8_2:33286229-33286248 Msa1244610:exon 45.0%
! AAGAGCAAGGTGAGTTTTGC+AGG - chr8_2:33286301-33286320 None:intergenic 45.0%
TGAGATCAGTGGAAAGAGCA+AGG - chr8_2:33286314-33286333 None:intergenic 45.0%
TTTCCACTGATCTCATCTCC+AGG + chr8_2:33286319-33286338 Msa1244610:CDS 45.0%
TTCCACTGATCTCATCTCCA+GGG + chr8_2:33286320-33286339 Msa1244610:CDS 45.0%
! ATTCTGCGTCTGTGTTGATG+TGG + chr8_2:33286648-33286667 Msa1244610:intron 45.0%
GAAATGCCTCGGCATTAGTT+TGG - chr8_2:33286706-33286725 None:intergenic 45.0%
!!! GGCTAGCTTGTCAGTTTTCA+TGG + chr8_2:33286786-33286805 Msa1244610:intron 45.0%
GTGAAGTTCACACTGTGTCA+TGG - chr8_2:33287056-33287075 None:intergenic 45.0%
CACAGTGTGAACTTCACTAG+TGG + chr8_2:33287059-33287078 Msa1244610:intron 45.0%
GAACTTCACTAGTGGAGAAG+TGG + chr8_2:33287067-33287086 Msa1244610:CDS 45.0%
TGGAAAGAGCGATGCTTTCA+GGG + chr8_2:33287090-33287109 Msa1244610:CDS 45.0%
TCTCTCATAGGAAACTGTGC+AGG + chr8_2:33287294-33287313 Msa1244610:intron 45.0%
GCCTTCAACACAGAATTCAG+TGG - chr8_2:33287491-33287510 None:intergenic 45.0%
TCAAAAGGAGATGGAACCGT+CGG + chr8_2:33287731-33287750 Msa1244610:three_prime_UTR 45.0%
GATTAAGATGAACCAGGGCA+GGG - chr8_2:33286157-33286176 None:intergenic 45.0%
AGATTAAGATGAACCAGGGC+AGG - chr8_2:33286158-33286177 None:intergenic 45.0%
GAGCGGTGACATCAATCAAA+TGG + chr8_2:33286227-33286246 Msa1244610:exon 45.0%
GCGGTGACATCAATCAAATG+GGG + chr8_2:33286229-33286248 Msa1244610:exon 45.0%
! AAGAGCAAGGTGAGTTTTGC+AGG - chr8_2:33286301-33286320 None:intergenic 45.0%
TGAGATCAGTGGAAAGAGCA+AGG - chr8_2:33286314-33286333 None:intergenic 45.0%
TTTCCACTGATCTCATCTCC+AGG + chr8_2:33286319-33286338 Msa1244610:CDS 45.0%
TTCCACTGATCTCATCTCCA+GGG + chr8_2:33286320-33286339 Msa1244610:CDS 45.0%
! ATTCTGCGTCTGTGTTGATG+TGG + chr8_2:33286648-33286667 Msa1244610:intron 45.0%
GAAATGCCTCGGCATTAGTT+TGG - chr8_2:33286706-33286725 None:intergenic 45.0%
!!! GGCTAGCTTGTCAGTTTTCA+TGG + chr8_2:33286786-33286805 Msa1244610:intron 45.0%
GTGAAGTTCACACTGTGTCA+TGG - chr8_2:33287056-33287075 None:intergenic 45.0%
CACAGTGTGAACTTCACTAG+TGG + chr8_2:33287059-33287078 Msa1244610:intron 45.0%
GAACTTCACTAGTGGAGAAG+TGG + chr8_2:33287067-33287086 Msa1244610:CDS 45.0%
TGGAAAGAGCGATGCTTTCA+GGG + chr8_2:33287090-33287109 Msa1244610:CDS 45.0%
TCTCTCATAGGAAACTGTGC+AGG + chr8_2:33287294-33287313 Msa1244610:intron 45.0%
GCCTTCAACACAGAATTCAG+TGG - chr8_2:33287491-33287510 None:intergenic 45.0%
TCAAAAGGAGATGGAACCGT+CGG + chr8_2:33287731-33287750 Msa1244610:three_prime_UTR 45.0%
GAGCTGGATGGCAGAGTTTA+CGG + chr8_2:33286267-33286286 Msa1244610:CDS 50.0%
TACCCTGGAGATGAGATCAG+TGG - chr8_2:33286325-33286344 None:intergenic 50.0%
CATACGTAAGGTCCTGGACA+GGG - chr8_2:33286825-33286844 None:intergenic 50.0%
ACATACGTAAGGTCCTGGAC+AGG - chr8_2:33286826-33286845 None:intergenic 50.0%
TGTCCAGGACCTTACGTATG+TGG + chr8_2:33286825-33286844 Msa1244610:intron 50.0%
GTCCAGGACCTTACGTATGT+GGG + chr8_2:33286826-33286845 Msa1244610:intron 50.0%
!! TGGGAGTTTTGTACACCGGA+CGG + chr8_2:33286845-33286864 Msa1244610:intron 50.0%
CTTCACTAGTGGAGAAGTGG+TGG + chr8_2:33287070-33287089 Msa1244610:CDS 50.0%
GTGGAAAGAGCGATGCTTTC+AGG + chr8_2:33287089-33287108 Msa1244610:CDS 50.0%
TGTCGCTGCGGTCAGATAAT+TGG + chr8_2:33287140-33287159 Msa1244610:CDS 50.0%
TTGCAACCAAGTGACCTCAG+AGG - chr8_2:33287760-33287779 None:intergenic 50.0%
! CTCGATTTGAGATTTGGCCC+AGG + chr8_2:33287804-33287823 Msa1244610:intron 50.0%
! GATTTGAGATTTGGCCCAGG+TGG + chr8_2:33287807-33287826 Msa1244610:intron 50.0%
TTCCATCTCCTTAGCCACCT+GGG - chr8_2:33287824-33287843 None:intergenic 50.0%
!! AGACCTGGCTCTTTTCACAC+AGG + chr8_2:33287860-33287879 Msa1244610:three_prime_UTR 50.0%
!! GACCTGGCTCTTTTCACACA+GGG + chr8_2:33287861-33287880 Msa1244610:three_prime_UTR 50.0%
GAGCTGGATGGCAGAGTTTA+CGG + chr8_2:33286267-33286286 Msa1244610:CDS 50.0%
TACCCTGGAGATGAGATCAG+TGG - chr8_2:33286325-33286344 None:intergenic 50.0%
CATACGTAAGGTCCTGGACA+GGG - chr8_2:33286825-33286844 None:intergenic 50.0%
ACATACGTAAGGTCCTGGAC+AGG - chr8_2:33286826-33286845 None:intergenic 50.0%
TGTCCAGGACCTTACGTATG+TGG + chr8_2:33286825-33286844 Msa1244610:intron 50.0%
GTCCAGGACCTTACGTATGT+GGG + chr8_2:33286826-33286845 Msa1244610:intron 50.0%
!! TGGGAGTTTTGTACACCGGA+CGG + chr8_2:33286845-33286864 Msa1244610:intron 50.0%
CTTCACTAGTGGAGAAGTGG+TGG + chr8_2:33287070-33287089 Msa1244610:CDS 50.0%
GTGGAAAGAGCGATGCTTTC+AGG + chr8_2:33287089-33287108 Msa1244610:CDS 50.0%
TGTCGCTGCGGTCAGATAAT+TGG + chr8_2:33287140-33287159 Msa1244610:CDS 50.0%
TTGCAACCAAGTGACCTCAG+AGG - chr8_2:33287760-33287779 None:intergenic 50.0%
! CTCGATTTGAGATTTGGCCC+AGG + chr8_2:33287804-33287823 Msa1244610:intron 50.0%
! GATTTGAGATTTGGCCCAGG+TGG + chr8_2:33287807-33287826 Msa1244610:intron 50.0%
TTCCATCTCCTTAGCCACCT+GGG - chr8_2:33287824-33287843 None:intergenic 50.0%
!! AGACCTGGCTCTTTTCACAC+AGG + chr8_2:33287860-33287879 Msa1244610:three_prime_UTR 50.0%
!! GACCTGGCTCTTTTCACACA+GGG + chr8_2:33287861-33287880 Msa1244610:three_prime_UTR 50.0%
CTCCCACATACGTAAGGTCC+TGG - chr8_2:33286831-33286850 None:intergenic 55.0%
!! GGGAGTTTTGTACACCGGAC+GGG + chr8_2:33286846-33286865 Msa1244610:intron 55.0%
!! GGAGTTTTGTACACCGGACG+GGG + chr8_2:33286847-33286866 Msa1244610:intron 55.0%
GCTGCGGTCAGATAATTGGC+TGG + chr8_2:33287144-33287163 Msa1244610:CDS 55.0%
GTGACCTCAGAGGAAACCGA+CGG - chr8_2:33287750-33287769 None:intergenic 55.0%
!! CGGTTTCCTCTGAGGTCACT+TGG + chr8_2:33287751-33287770 Msa1244610:intron 55.0%
AGATTTGGCCCAGGTGGCTA+AGG + chr8_2:33287813-33287832 Msa1244610:intron 55.0%
GTTCCATCTCCTTAGCCACC+TGG - chr8_2:33287825-33287844 None:intergenic 55.0%
GTCCCTGTGTGAAAAGAGCC+AGG - chr8_2:33287866-33287885 None:intergenic 55.0%
CTCCCACATACGTAAGGTCC+TGG - chr8_2:33286831-33286850 None:intergenic 55.0%
!! GGGAGTTTTGTACACCGGAC+GGG + chr8_2:33286846-33286865 Msa1244610:intron 55.0%
!! GGAGTTTTGTACACCGGACG+GGG + chr8_2:33286847-33286866 Msa1244610:intron 55.0%
GCTGCGGTCAGATAATTGGC+TGG + chr8_2:33287144-33287163 Msa1244610:CDS 55.0%
GTGACCTCAGAGGAAACCGA+CGG - chr8_2:33287750-33287769 None:intergenic 55.0%
!! CGGTTTCCTCTGAGGTCACT+TGG + chr8_2:33287751-33287770 Msa1244610:intron 55.0%
AGATTTGGCCCAGGTGGCTA+AGG + chr8_2:33287813-33287832 Msa1244610:intron 55.0%
GTTCCATCTCCTTAGCCACC+TGG - chr8_2:33287825-33287844 None:intergenic 55.0%
GTCCCTGTGTGAAAAGAGCC+AGG - chr8_2:33287866-33287885 None:intergenic 55.0%
! TGAATGGTGGGACCCTGTCC+AGG + chr8_2:33286810-33286829 Msa1244610:intron 60.0%
!! GGAACCGTCGGTTTCCTCTG+AGG + chr8_2:33287743-33287762 Msa1244610:three_prime_UTR 60.0%
! TGAATGGTGGGACCCTGTCC+AGG + chr8_2:33286810-33286829 Msa1244610:intron 60.0%
!! GGAACCGTCGGTTTCCTCTG+AGG + chr8_2:33287743-33287762 Msa1244610:three_prime_UTR 60.0%
ACATTCAGGGCAGCCCCGTC+CGG - chr8_2:33286863-33286882 None:intergenic 65.0%
GGCCCAGGTGGCTAAGGAGA+TGG + chr8_2:33287819-33287838 Msa1244610:intron 65.0%
ACATTCAGGGCAGCCCCGTC+CGG - chr8_2:33286863-33286882 None:intergenic 65.0%
GGCCCAGGTGGCTAAGGAGA+TGG + chr8_2:33287819-33287838 Msa1244610:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 33286154 33287894 33286154 ID=Msa1244610;Name=Msa1244610
chr8_2 mRNA 33286154 33287894 33286154 ID=Msa1244610-mRNA-1;Parent=Msa1244610;Name=Msa1244610-mRNA-1;_AED=0.16;_eAED=0.16;_QI=92|1|1|1|0.8|0.66|6|290|129
chr8_2 exon 33286154 33286341 33286154 ID=Msa1244610-mRNA-1:exon:10757;Parent=Msa1244610-mRNA-1
chr8_2 exon 33286443 33286486 33286443 ID=Msa1244610-mRNA-1:exon:10758;Parent=Msa1244610-mRNA-1
chr8_2 exon 33287064 33287172 33287064 ID=Msa1244610-mRNA-1:exon:10759;Parent=Msa1244610-mRNA-1
chr8_2 exon 33287304 33287359 33287304 ID=Msa1244610-mRNA-1:exon:10760;Parent=Msa1244610-mRNA-1
chr8_2 exon 33287459 33287764 33287459 ID=Msa1244610-mRNA-1:exon:10761;Parent=Msa1244610-mRNA-1
chr8_2 exon 33287826 33287894 33287826 ID=Msa1244610-mRNA-1:exon:10762;Parent=Msa1244610-mRNA-1
chr8_2 five_prime_UTR 33286154 33286245 33286154 ID=Msa1244610-mRNA-1:five_prime_utr;Parent=Msa1244610-mRNA-1
chr8_2 CDS 33286246 33286341 33286246 ID=Msa1244610-mRNA-1:cds;Parent=Msa1244610-mRNA-1
chr8_2 CDS 33286443 33286486 33286443 ID=Msa1244610-mRNA-1:cds;Parent=Msa1244610-mRNA-1
chr8_2 CDS 33287064 33287172 33287064 ID=Msa1244610-mRNA-1:cds;Parent=Msa1244610-mRNA-1
chr8_2 CDS 33287304 33287359 33287304 ID=Msa1244610-mRNA-1:cds;Parent=Msa1244610-mRNA-1
chr8_2 CDS 33287459 33287543 33287459 ID=Msa1244610-mRNA-1:cds;Parent=Msa1244610-mRNA-1
chr8_2 three_prime_UTR 33287544 33287764 33287544 ID=Msa1244610-mRNA-1:three_prime_utr;Parent=Msa1244610-mRNA-1
chr8_2 three_prime_UTR 33287826 33287894 33287826 ID=Msa1244610-mRNA-1:three_prime_utr;Parent=Msa1244610-mRNA-1
Gene Sequence

>Msa1244610

ATGGGGAGAATTTTTGCAGTTGAGCTGGATGGCAGAGTTTACGGCTGCAAGTCCTGCAAAACTCACCTTGCTCTTTCCACTGATCTCATCTCCAGGGGATTTTATTGTCATAGAGGAAAAGCATACCTTTTCAATAATGTTGTGAACTTCACTAGTGGAGAAGTGGTGGAAAGAGCGATGCTTTCAGGGATGCATACTGTTGCAGATATATTTTGTTGTCGCTGCGGTCAGATAATTGGCTGGAAATACGAAACTGTGCAGGAGAAAAGCCAAAAGTACAAAGAGGGAAAGTTTGTTCTTGAAAGAGGAAGGATCGTTGATGAAATCGGTTTCTCCACTGAATTCTGTGTTGAAGGCTGTGTCAGCATGAGTGATACTGAAGATGATTAG

Protein sequence

>Msa1244610

MGRIFAVELDGRVYGCKSCKTHLALSTDLISRGFYCHRGKAYLFNNVVNFTSGEVVERAMLSGMHTVADIFCCRCGQIIGWKYETVQEKSQKYKEGKFVLERGRIVDEIGFSTEFCVEGCVSMSDTEDD*