AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0626230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626230 MtrunA17_Chr4g0002121 97.462 197 5 0 9 205 103 299 1.17e-142 399
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0626230 AT1G16080.1 78.680 197 42 0 9 205 117 313 7.57e-114 327

Find 79 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTAATTAGTTACTTAC+AGG 0.250201 4_3:-5581373 Msa0626230:three_prime_UTR
TGCTTATGGCAAGTGGTCTT+TGG 0.280904 4_3:-5583610 Msa0626230:CDS
TTGAAGCAATATGATGTAAA+TGG 0.309823 4_3:+5581316 None:intergenic
TTTCAACTCTTTAAGCCATT+TGG 0.333255 4_3:+5581486 None:intergenic
CTGATGCTAGTTCTGCTATC+AGG 0.381223 4_3:+5582089 None:intergenic
ATTTGTTCTGTCATGCTTGT+TGG 0.385378 4_3:-5582864 Msa0626230:CDS
TAAGCAGCTGTCAATCCTTC+AGG 0.391739 4_3:+5583627 None:intergenic
GAAGGATTGACAGCTGCTTA+TGG 0.394793 4_3:-5583624 Msa0626230:CDS
TTCTGTTGGTGTTGTGGAAA+AGG 0.395942 4_3:-5582823 Msa0626230:CDS
ATCGTTTGGTGTGGCAGATT+TGG 0.398652 4_3:-5583781 Msa0626230:CDS
TCACTTTCCCACGGCAGTTA+AGG 0.401542 4_3:-5581990 Msa0626230:CDS
TTTCTTGCAGCAAGTATATG+AGG 0.403444 4_3:+5581147 None:intergenic
AGGGGTTTCTGTTGGTGTTG+TGG 0.406514 4_3:-5582829 Msa0626230:CDS
GTATCAGTCTTACCATCAAT+AGG 0.407023 4_3:+5583654 None:intergenic
AATGAGTTGTTACTATCGTT+TGG 0.411010 4_3:-5583795 None:intergenic
ATCAGCAGCAGCTAGTGAAA+AGG 0.412413 4_3:-5582071 Msa0626230:CDS
AAGTCTACACATATAGCTAA+TGG 0.412739 4_3:+5581412 None:intergenic
TATCAGTCTTACCATCAATA+GGG 0.414325 4_3:+5583655 None:intergenic
TCAGCAGCAGCTAGTGAAAA+GGG 0.417729 4_3:-5582070 Msa0626230:CDS
GAGAGTAAAGGTTTGAAAGA+TGG 0.424292 4_3:-5583723 Msa0626230:CDS
CTTGGAGAGTCCCCTATTGA+TGG 0.426493 4_3:-5583666 Msa0626230:CDS
GGTCATGTTTGCAGTTCAAA+TGG 0.443722 4_3:-5581582 Msa0626230:intron
ACGGTTCCAACATTCCATTC+TGG 0.447867 4_3:+5583751 None:intergenic
GACATGGATCCTGCTTGCCT+TGG 0.448950 4_3:+5581518 None:intergenic
AGAGTAAAGGTTTGAAAGAT+GGG 0.455581 4_3:-5583722 Msa0626230:CDS
TTGTTGGAGCGCGTCATGGA+GGG 0.466204 4_3:-5582848 Msa0626230:CDS
AGATGTTAGAGAAGCTCATA+TGG 0.474520 4_3:-5582887 Msa0626230:CDS
TATTTCGCAGTGTCAAAACT+TGG 0.486806 4_3:-5583684 Msa0626230:CDS
CGTCATGGAGGGGTTTCTGT+TGG 0.491161 4_3:-5582837 Msa0626230:CDS
ACATGGATCCTGCTTGCCTT+GGG 0.493651 4_3:+5581519 None:intergenic
GGCTATTGCCCAAGGCAAGC+AGG 0.503997 4_3:-5581527 Msa0626230:CDS
AGTTCAAATGGAGGAATGGT+TGG 0.513675 4_3:-5581570 Msa0626230:CDS
TGTTGGAGCGCGTCATGGAG+GGG 0.514554 4_3:-5582847 Msa0626230:CDS
CTTGTTGGAGCGCGTCATGG+AGG 0.518604 4_3:-5582849 Msa0626230:CDS
ACCTATAAAACAAGTGTGTG+TGG 0.521466 4_3:-5581208 Msa0626230:three_prime_UTR
ATGCTTGTTGGAGCGCGTCA+TGG 0.522740 4_3:-5582852 Msa0626230:CDS
CTTTACCTCCTTAACTGCCG+TGG 0.529569 4_3:+5581982 None:intergenic
CTCGGGAGTACGCACACAAA+CGG 0.530423 4_3:+5582020 None:intergenic
AGCTGTCAATCCTTCAGGAT+TGG 0.538382 4_3:+5583632 None:intergenic
CAATATGATGTAAATGGACA+TGG 0.539245 4_3:+5581322 None:intergenic
GTTTCTGAAAGATTGAAAGC+TGG 0.541448 4_3:-5583585 Msa0626230:CDS
CTGCGAAATATGCCAACACT+TGG 0.541538 4_3:+5583697 None:intergenic
CCTATAAAACAAGTGTGTGT+GGG 0.542045 4_3:-5581207 Msa0626230:three_prime_UTR
CATGTCCTATGCATACCAAA+TGG 0.544512 4_3:-5581501 Msa0626230:CDS
GGGAAAGTGAGCAACAGCTC+GGG 0.545271 4_3:+5582003 None:intergenic
CTATAAAACAAGTGTGTGTG+GGG 0.547304 4_3:-5581206 Msa0626230:three_prime_UTR
TGGGAAAGTGAGCAACAGCT+CGG 0.549510 4_3:+5582002 None:intergenic
GAACCGTGGCTTGAGAGTAA+AGG 0.552420 4_3:-5583735 Msa0626230:CDS
TTAAGCCATTTGGTATGCAT+AGG 0.559098 4_3:+5581496 None:intergenic
CGCACACAAACGGTCTTCCA+TGG 0.562813 4_3:+5582030 None:intergenic
TTCTTGCAGCAAGTATATGA+GGG 0.564452 4_3:+5581148 None:intergenic
AAGGTATAAGGATTAGCCAT+GGG 0.564526 4_3:+5581109 None:intergenic
GTTAAAGTTTGAAGAAGCCA+TGG 0.564615 4_3:-5582047 Msa0626230:CDS
TGAATACTACCTTGCAAGAG+AGG 0.565186 4_3:+5583559 None:intergenic
TTTACCTCCTTAACTGCCGT+GGG 0.574195 4_3:+5581983 None:intergenic
AGCTGGAGGCCTCTCTTGCA+AGG 0.574480 4_3:-5583568 Msa0626230:intron
GAAAGATGGGAACCAAGTGT+TGG 0.583229 4_3:-5583709 Msa0626230:CDS
CTTTCCCACGGCAGTTAAGG+AGG 0.584441 4_3:-5581987 Msa0626230:intron
TCTGAGAAGGCTATTGCCCA+AGG 0.586147 4_3:-5581535 Msa0626230:CDS
TTGAACTCTCATGTGTCACT+AGG 0.596365 4_3:-5581445 Msa0626230:three_prime_UTR
TTGCAGTTCAAATGGAGGAA+TGG 0.597693 4_3:-5581574 Msa0626230:intron
ATCAGTCTTACCATCAATAG+GGG 0.599930 4_3:+5583656 None:intergenic
TCTGAAAGATTGAAAGCTGG+AGG 0.599953 4_3:-5583582 Msa0626230:CDS
AGCTGTTGCTCACTTTCCCA+CGG 0.605457 4_3:-5581999 Msa0626230:CDS
CATGTTTGCAGTTCAAATGG+AGG 0.608904 4_3:-5581579 Msa0626230:intron
TGACAGCTGCTTATGGCAAG+TGG 0.617113 4_3:-5583617 Msa0626230:CDS
AAGACTGATACCAATCCTGA+AGG 0.623096 4_3:-5583642 Msa0626230:CDS
GAAGGTATAAGGATTAGCCA+TGG 0.627990 4_3:+5581108 None:intergenic
CATTTGGTATGCATAGGACA+TGG 0.629892 4_3:+5581502 None:intergenic
AACAAGTAGTAGTACTACAA+AGG 0.631659 4_3:+5581292 None:intergenic
TGGACATGGTTATCTACATG+TGG 0.633706 4_3:+5581336 None:intergenic
AAAGCTTACTTACTTCAAGG+TGG 0.643257 4_3:+5582796 None:intergenic
AGAATGGAATGTTGGAACCG+TGG 0.644899 4_3:-5583749 Msa0626230:CDS
AAACCTTTACTCTCAAGCCA+CGG 0.646640 4_3:+5583732 None:intergenic
CAGCAGCAGCTAGTGAAAAG+GGG 0.664557 4_3:-5582069 Msa0626230:CDS
GTTGTTACTATCGTTTGGTG+TGG 0.672751 4_3:-5583790 Msa0626230:CDS
AGGTATAAGGATTAGCCATG+GGG 0.695942 4_3:+5581110 None:intergenic
GGTATAAGGATTAGCCATGG+GGG 0.734429 4_3:+5581111 None:intergenic
TATAAAACAAGTGTGTGTGG+GGG 0.770887 4_3:-5581205 Msa0626230:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAAAAACTTATTTTAC+GGG - chr4_3:5581427-5581446 Msa0626230:three_prime_UTR 10.0%
!! CCATTTAAAAATTAAAAATA+TGG + chr4_3:5582498-5582517 None:intergenic 10.0%
!!! CCATATTTTTAATTTTTAAA+TGG - chr4_3:5582495-5582514 Msa0626230:intron 10.0%
!! GTTTATAATGAATTATTAAG+CGG - chr4_3:5582296-5582315 Msa0626230:intron 15.0%
!!! GAACATATTTAATTTTAACT+TGG + chr4_3:5582587-5582606 None:intergenic 15.0%
!! ATTATGAATGTATTCTAATT+GGG + chr4_3:5583243-5583262 None:intergenic 15.0%
!! AATTATGAATGTATTCTAAT+TGG + chr4_3:5583244-5583263 None:intergenic 15.0%
!!! TAGAAGAAAATTAATGGATA+TGG + chr4_3:5581734-5581753 None:intergenic 20.0%
!!! ATCATTTTAGTATTGCTATA+TGG - chr4_3:5582471-5582490 Msa0626230:intron 20.0%
!!! TCATTTTAGTATTGCTATAT+GGG - chr4_3:5582472-5582491 Msa0626230:intron 20.0%
!! ATAACATGAGAATAAATTAG+AGG - chr4_3:5583017-5583036 Msa0626230:intron 20.0%
!! TTAGTGTTTAATCAATATCT+TGG - chr4_3:5583308-5583327 Msa0626230:intron 20.0%
!!! TAAAAACTTATTTTACGGGA+CGG - chr4_3:5581431-5581450 Msa0626230:three_prime_UTR 25.0%
! ATCTTTAGATGAAAATCAGA+AGG - chr4_3:5581578-5581597 Msa0626230:intron 25.0%
!!! TTCACGTTTATTTTCCAAAT+CGG + chr4_3:5581627-5581646 None:intergenic 25.0%
! CGAAGATAGAAGAAAATTAA+TGG + chr4_3:5581740-5581759 None:intergenic 25.0%
! TTTGTTACTATTTCAAGCTT+AGG + chr4_3:5581773-5581792 None:intergenic 25.0%
! AAGTTTATGAATTTCAAGCA+CGG - chr4_3:5581815-5581834 Msa0626230:intron 25.0%
!! GCATATTAACTTTGAGAAAA+TGG + chr4_3:5582148-5582167 None:intergenic 25.0%
! ATTTGTATATATAGAGAGAG+TGG + chr4_3:5582362-5582381 None:intergenic 25.0%
! CAATCTATTTATTCAGTTGT+TGG - chr4_3:5582613-5582632 Msa0626230:intron 25.0%
! TTATTCTCATGTTATCAGTA+TGG + chr4_3:5583012-5583031 None:intergenic 25.0%
!!! AGTTGGATTATTTTTTGGTT+AGG + chr4_3:5583194-5583213 None:intergenic 25.0%
!!! TGATGAGTTGGATTATTTTT+TGG + chr4_3:5583199-5583218 None:intergenic 25.0%
! AAGAGTAATTAGTTACTTAC+AGG - chr4_3:5583538-5583557 Msa0626230:intron 25.0%
! TTGAAGCAATATGATGTAAA+TGG + chr4_3:5583598-5583617 None:intergenic 25.0%
AGAGTAAAGGTTTGAAAGAT+GGG - chr4_3:5581189-5581208 Msa0626230:three_prime_UTR 30.0%
TATCAGTCTTACCATCAATA+GGG + chr4_3:5581259-5581278 None:intergenic 30.0%
GTAACCAAAACAAGAAAACT+TGG + chr4_3:5581406-5581425 None:intergenic 30.0%
!! CTCACGTGTTATTGTATTTT+TGG - chr4_3:5581494-5581513 Msa0626230:CDS 30.0%
! GGATTGCTTAACAATTTTTC+TGG - chr4_3:5581515-5581534 Msa0626230:CDS 30.0%
AAATCTTAGTAAGTCCGATT+TGG - chr4_3:5581610-5581629 Msa0626230:intron 30.0%
GTCATTCTATCTTCATTCAA+CGG - chr4_3:5581653-5581672 Msa0626230:intron 30.0%
! TTTTCTTCTATCTTCGATGT+TGG - chr4_3:5581744-5581763 Msa0626230:intron 30.0%
GGAAAATTCCTAAGATTAGA+GGG - chr4_3:5581836-5581855 Msa0626230:intron 30.0%
GAAAATTCCTAAGATTAGAG+GGG - chr4_3:5581837-5581856 Msa0626230:intron 30.0%
AATTAAACCCCTCTAATCTT+AGG + chr4_3:5581847-5581866 None:intergenic 30.0%
! AACTTTGAGAAAATGGCAAT+AGG + chr4_3:5582141-5582160 None:intergenic 30.0%
TTTGTCAATCAACATTTGCT+TGG - chr4_3:5582174-5582193 Msa0626230:intron 30.0%
! AATTGTGTCGTTAAGATAGT+TGG - chr4_3:5582236-5582255 Msa0626230:intron 30.0%
ATCAATTTCTGTGTGCAAAT+AGG - chr4_3:5582535-5582554 Msa0626230:intron 30.0%
AAATTGATTACCTATGTGTC+TGG - chr4_3:5582682-5582701 Msa0626230:intron 30.0%
AATTGATTACCTATGTGTCT+GGG - chr4_3:5582683-5582702 Msa0626230:intron 30.0%
TCAATTTCATAGTTGCAACA+TGG + chr4_3:5582743-5582762 None:intergenic 30.0%
TCATCTGTGAAATATAAGAC+TGG + chr4_3:5583149-5583168 None:intergenic 30.0%
GTCTTATATTTCACAGATGA+TGG - chr4_3:5583149-5583168 Msa0626230:intron 30.0%
ATGAATGAAATGTGATGAGT+TGG + chr4_3:5583211-5583230 None:intergenic 30.0%
TTTCAACTCTTTAAGCCATT+TGG + chr4_3:5583428-5583447 None:intergenic 30.0%
AAGTCTACACATATAGCTAA+TGG + chr4_3:5583502-5583521 None:intergenic 30.0%
CAATATGATGTAAATGGACA+TGG + chr4_3:5583592-5583611 None:intergenic 30.0%
AACAAGTAGTAGTACTACAA+AGG + chr4_3:5583622-5583641 None:intergenic 30.0%
!!! GATTTGGTGTTTTTCCAGAA+TGG - chr4_3:5581146-5581165 Msa0626230:three_prime_UTR 35.0%
! GTTTTTCCAGAATGGAATGT+TGG - chr4_3:5581154-5581173 Msa0626230:three_prime_UTR 35.0%
GAGAGTAAAGGTTTGAAAGA+TGG - chr4_3:5581188-5581207 Msa0626230:three_prime_UTR 35.0%
TATTTCGCAGTGTCAAAACT+TGG - chr4_3:5581227-5581246 Msa0626230:three_prime_UTR 35.0%
ATCAGTCTTACCATCAATAG+GGG + chr4_3:5581258-5581277 None:intergenic 35.0%
GTATCAGTCTTACCATCAAT+AGG + chr4_3:5581260-5581279 None:intergenic 35.0%
! GTTTCTGAAAGATTGAAAGC+TGG - chr4_3:5581326-5581345 Msa0626230:three_prime_UTR 35.0%
AAACAAGAAAACTTGGCTAC+TGG + chr4_3:5581399-5581418 None:intergenic 35.0%
!! GTAGCCAAGTTTTCTTGTTT+TGG - chr4_3:5581399-5581418 Msa0626230:three_prime_UTR 35.0%
!!! GGACCTGTTGTTTTCTTTTT+GGG - chr4_3:5581452-5581471 Msa0626230:three_prime_UTR 35.0%
TCTCCCAAAAAGAAAACAAC+AGG + chr4_3:5581458-5581477 None:intergenic 35.0%
ATTCTGATTCAACTGAACTC+TGG + chr4_3:5581560-5581579 None:intergenic 35.0%
GGTTTCGATATATACAGTGA+TGG - chr4_3:5581674-5581693 Msa0626230:intron 35.0%
CGGAAAATTCCTAAGATTAG+AGG - chr4_3:5581835-5581854 Msa0626230:intron 35.0%
AGATGTTAGAGAAGCTCATA+TGG - chr4_3:5582024-5582043 Msa0626230:CDS 35.0%
ATTTGTTCTGTCATGCTTGT+TGG - chr4_3:5582047-5582066 Msa0626230:CDS 35.0%
AAAGCTTACTTACTTCAAGG+TGG + chr4_3:5582118-5582137 None:intergenic 35.0%
AGGAAAGCTTACTTACTTCA+AGG + chr4_3:5582121-5582140 None:intergenic 35.0%
TGTGTCAGTGTTATCATGTA+TGG - chr4_3:5582384-5582403 Msa0626230:intron 35.0%
TTGCACACAGAAATTGATGT+AGG + chr4_3:5582533-5582552 None:intergenic 35.0%
AGATATTATCCCAGACACAT+AGG + chr4_3:5582695-5582714 None:intergenic 35.0%
GTTAAAGTTTGAAGAAGCCA+TGG - chr4_3:5582864-5582883 Msa0626230:CDS 35.0%
AGAGAATTTCGTTCTTTGTC+TGG - chr4_3:5583106-5583125 Msa0626230:intron 35.0%
!! GTTTTATGCTCTTTCTGAGA+AGG - chr4_3:5583363-5583382 Msa0626230:intron 35.0%
TTAAGCCATTTGGTATGCAT+AGG + chr4_3:5583418-5583437 None:intergenic 35.0%
ACCTATAAAACAAGTGTGTG+TGG - chr4_3:5583703-5583722 Msa0626230:CDS 35.0%
CCTATAAAACAAGTGTGTGT+GGG - chr4_3:5583704-5583723 Msa0626230:CDS 35.0%
CTATAAAACAAGTGTGTGTG+GGG - chr4_3:5583705-5583724 Msa0626230:CDS 35.0%
TATAAAACAAGTGTGTGTGG+GGG - chr4_3:5583706-5583725 Msa0626230:CDS 35.0%
TTCTTGCAGCAAGTATATGA+GGG + chr4_3:5583766-5583785 None:intergenic 35.0%
TTTCTTGCAGCAAGTATATG+AGG + chr4_3:5583767-5583786 None:intergenic 35.0%
! AATTTTACTTCATACCCCCA+TGG - chr4_3:5583786-5583805 Msa0626230:CDS 35.0%
AAACCTTTACTCTCAAGCCA+CGG + chr4_3:5581182-5581201 None:intergenic 40.0%
AAGACTGATACCAATCCTGA+AGG - chr4_3:5581269-5581288 Msa0626230:three_prime_UTR 40.0%
TCTGAAAGATTGAAAGCTGG+AGG - chr4_3:5581329-5581348 Msa0626230:three_prime_UTR 40.0%
TGAATACTACCTTGCAAGAG+AGG + chr4_3:5581355-5581374 None:intergenic 40.0%
!!! CGGACCTGTTGTTTTCTTTT+TGG - chr4_3:5581451-5581470 Msa0626230:three_prime_UTR 40.0%
ATGCTTCCTTATCCAAAACC+TGG + chr4_3:5581995-5582014 None:intergenic 40.0%
!! TTCTGTTGGTGTTGTGGAAA+AGG - chr4_3:5582088-5582107 Msa0626230:CDS 40.0%
GGATATTGCAATCAGTGAGT+TGG - chr4_3:5582257-5582276 Msa0626230:intron 40.0%
! TGCAATCAGTGAGTTGGATT+AGG - chr4_3:5582263-5582282 Msa0626230:intron 40.0%
! GCAATCAGTGAGTTGGATTA+GGG - chr4_3:5582264-5582283 Msa0626230:intron 40.0%
AGTGGCAATACATTGACAGT+AGG + chr4_3:5582344-5582363 None:intergenic 40.0%
TTCTGTGTGCAAATAGGTTG+TGG - chr4_3:5582541-5582560 Msa0626230:intron 40.0%
TCTGTGTGCAAATAGGTTGT+GGG - chr4_3:5582542-5582561 Msa0626230:intron 40.0%
CCTAGATCATCATACGACTA+TGG + chr4_3:5583053-5583072 None:intergenic 40.0%
CCATAGTCGTATGATGATCT+AGG - chr4_3:5583050-5583069 Msa0626230:intron 40.0%
ATTTCGTTCTTTGTCTGGTG+AGG - chr4_3:5583111-5583130 Msa0626230:intron 40.0%
GGTCATGTTTGCAGTTCAAA+TGG - chr4_3:5583329-5583348 Msa0626230:intron 40.0%
CATGTTTGCAGTTCAAATGG+AGG - chr4_3:5583332-5583351 Msa0626230:intron 40.0%
TTGCAGTTCAAATGGAGGAA+TGG - chr4_3:5583337-5583356 Msa0626230:intron 40.0%
AGTTCAAATGGAGGAATGGT+TGG - chr4_3:5583341-5583360 Msa0626230:intron 40.0%
CATTTGGTATGCATAGGACA+TGG + chr4_3:5583412-5583431 None:intergenic 40.0%
CATGTCCTATGCATACCAAA+TGG - chr4_3:5583410-5583429 Msa0626230:intron 40.0%
! TTGAACTCTCATGTGTCACT+AGG - chr4_3:5583466-5583485 Msa0626230:intron 40.0%
TGGACATGGTTATCTACATG+TGG + chr4_3:5583578-5583597 None:intergenic 40.0%
!!! CCCACACACACTTGTTTTAT+AGG + chr4_3:5583707-5583726 None:intergenic 40.0%
! TTGGGAGATGCTATCTTTTG+TGG - chr4_3:5583739-5583758 Msa0626230:CDS 40.0%
!! ATCGTTTGGTGTGGCAGATT+TGG - chr4_3:5581130-5581149 Msa0626230:three_prime_UTR 45.0%
ACGGTTCCAACATTCCATTC+TGG + chr4_3:5581163-5581182 None:intergenic 45.0%
AGAATGGAATGTTGGAACCG+TGG - chr4_3:5581162-5581181 Msa0626230:three_prime_UTR 45.0%
GAAAGATGGGAACCAAGTGT+TGG - chr4_3:5581202-5581221 Msa0626230:three_prime_UTR 45.0%
CTGCGAAATATGCCAACACT+TGG + chr4_3:5581217-5581236 None:intergenic 45.0%
AGCTGTCAATCCTTCAGGAT+TGG + chr4_3:5581282-5581301 None:intergenic 45.0%
TAAGCAGCTGTCAATCCTTC+AGG + chr4_3:5581287-5581306 None:intergenic 45.0%
GAAGGATTGACAGCTGCTTA+TGG - chr4_3:5581287-5581306 Msa0626230:three_prime_UTR 45.0%
TGCTTATGGCAAGTGGTCTT+TGG - chr4_3:5581301-5581320 Msa0626230:three_prime_UTR 45.0%
!!! TGAACGCCAGGTTTTGGATA+AGG - chr4_3:5581986-5582005 Msa0626230:intron 45.0%
!! CTGATGCTAGTTCTGCTATC+AGG + chr4_3:5582825-5582844 None:intergenic 45.0%
ATCAGCAGCAGCTAGTGAAA+AGG - chr4_3:5582840-5582859 Msa0626230:CDS 45.0%
TCAGCAGCAGCTAGTGAAAA+GGG - chr4_3:5582841-5582860 Msa0626230:CDS 45.0%
TTTACCTCCTTAACTGCCGT+GGG + chr4_3:5582931-5582950 None:intergenic 45.0%
GATCATCATACGACTATGGC+AGG + chr4_3:5583049-5583068 None:intergenic 45.0%
!!! TTTTTGGTTAGGCTGCTACG+AGG + chr4_3:5583183-5583202 None:intergenic 45.0%
!!! ATTAATAAAAACTTATTTTA+CGG - chr4_3:5581426-5581445 Msa0626230:three_prime_UTR 5.0%
GAACCGTGGCTTGAGAGTAA+AGG - chr4_3:5581176-5581195 Msa0626230:three_prime_UTR 50.0%
CTTGGAGAGTCCCCTATTGA+TGG - chr4_3:5581245-5581264 Msa0626230:three_prime_UTR 50.0%
TGACAGCTGCTTATGGCAAG+TGG - chr4_3:5581294-5581313 Msa0626230:three_prime_UTR 50.0%
CAAAACCTGGCGTTCAAGAC+GGG + chr4_3:5581982-5582001 None:intergenic 50.0%
CCAAAACCTGGCGTTCAAGA+CGG + chr4_3:5581983-5582002 None:intergenic 50.0%
!! AGGGGTTTCTGTTGGTGTTG+TGG - chr4_3:5582082-5582101 Msa0626230:CDS 50.0%
!! AGGTTGTGGGCTCTGACTTT+TGG - chr4_3:5582555-5582574 Msa0626230:intron 50.0%
!! GGTTGTGGGCTCTGACTTTT+GGG - chr4_3:5582556-5582575 Msa0626230:intron 50.0%
CAGCAGCAGCTAGTGAAAAG+GGG - chr4_3:5582842-5582861 Msa0626230:CDS 50.0%
TGGGAAAGTGAGCAACAGCT+CGG + chr4_3:5582912-5582931 None:intergenic 50.0%
AGCTGTTGCTCACTTTCCCA+CGG - chr4_3:5582912-5582931 Msa0626230:CDS 50.0%
TCACTTTCCCACGGCAGTTA+AGG - chr4_3:5582921-5582940 Msa0626230:intron 50.0%
CTTTACCTCCTTAACTGCCG+TGG + chr4_3:5582932-5582951 None:intergenic 50.0%
CGTTCTTTGTCTGGTGAGGT+AGG - chr4_3:5583115-5583134 Msa0626230:intron 50.0%
TCTTTGTCTGGTGAGGTAGG+TGG - chr4_3:5583118-5583137 Msa0626230:intron 50.0%
TCTGAGAAGGCTATTGCCCA+AGG - chr4_3:5583376-5583395 Msa0626230:intron 50.0%
ACATGGATCCTGCTTGCCTT+GGG + chr4_3:5583395-5583414 None:intergenic 50.0%
! TGTGGGGGCTGATATTGGTT+GGG - chr4_3:5583721-5583740 Msa0626230:CDS 50.0%
! CCGTCTTGAACGCCAGGTTT+TGG - chr4_3:5581980-5581999 Msa0626230:intron 55.0%
! ATGCTTGTTGGAGCGCGTCA+TGG - chr4_3:5582059-5582078 Msa0626230:CDS 55.0%
TTGTTGGAGCGCGTCATGGA+GGG - chr4_3:5582063-5582082 Msa0626230:CDS 55.0%
CGTCATGGAGGGGTTTCTGT+TGG - chr4_3:5582074-5582093 Msa0626230:CDS 55.0%
CGCACACAAACGGTCTTCCA+TGG + chr4_3:5582884-5582903 None:intergenic 55.0%
! CTCGGGAGTACGCACACAAA+CGG + chr4_3:5582894-5582913 None:intergenic 55.0%
GGGAAAGTGAGCAACAGCTC+GGG + chr4_3:5582911-5582930 None:intergenic 55.0%
CTTTCCCACGGCAGTTAAGG+AGG - chr4_3:5582924-5582943 Msa0626230:intron 55.0%
GACATGGATCCTGCTTGCCT+TGG + chr4_3:5583396-5583415 None:intergenic 55.0%
GTGTGTGTGGGGGCTGATAT+TGG - chr4_3:5583716-5583735 Msa0626230:CDS 55.0%
GTGTGGGGGCTGATATTGGT+TGG - chr4_3:5583720-5583739 Msa0626230:CDS 55.0%
AGCTGGAGGCCTCTCTTGCA+AGG - chr4_3:5581343-5581362 Msa0626230:three_prime_UTR 60.0%
TCTGACCCGTCTTGAACGCC+AGG - chr4_3:5581974-5581993 Msa0626230:intron 60.0%
CTTGTTGGAGCGCGTCATGG+AGG - chr4_3:5582062-5582081 Msa0626230:CDS 60.0%
TGTTGGAGCGCGTCATGGAG+GGG - chr4_3:5582064-5582083 Msa0626230:CDS 60.0%
GTCTGGTGAGGTAGGTGGCT+AGG - chr4_3:5583123-5583142 Msa0626230:intron 60.0%
GGCTATTGCCCAAGGCAAGC+AGG - chr4_3:5583384-5583403 Msa0626230:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 5581122 5583811 5581122 ID=Msa0626230;Name=Msa0626230
chr4_3 mRNA 5581122 5583811 5581122 ID=Msa0626230-mRNA-1;Parent=Msa0626230;Name=Msa0626230-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.75|1|1|1|4|355|205
chr4_3 exon 5581122 5581590 5581122 ID=Msa0626230-mRNA-1:exon:1583;Parent=Msa0626230-mRNA-1
chr4_3 exon 5581988 5582119 5581988 ID=Msa0626230-mRNA-1:exon:1582;Parent=Msa0626230-mRNA-1
chr4_3 exon 5582809 5582937 5582809 ID=Msa0626230-mRNA-1:exon:1581;Parent=Msa0626230-mRNA-1
chr4_3 exon 5583569 5583811 5583569 ID=Msa0626230-mRNA-1:exon:1580;Parent=Msa0626230-mRNA-1
chr4_3 CDS 5583569 5583811 5583569 ID=Msa0626230-mRNA-1:cds;Parent=Msa0626230-mRNA-1
chr4_3 CDS 5582809 5582937 5582809 ID=Msa0626230-mRNA-1:cds;Parent=Msa0626230-mRNA-1
chr4_3 CDS 5581988 5582119 5581988 ID=Msa0626230-mRNA-1:cds;Parent=Msa0626230-mRNA-1
chr4_3 CDS 5581477 5581590 5581477 ID=Msa0626230-mRNA-1:cds;Parent=Msa0626230-mRNA-1
chr4_3 three_prime_UTR 5581122 5581476 5581122 ID=Msa0626230-mRNA-1:three_prime_utr;Parent=Msa0626230-mRNA-1
Gene Sequence

>Msa0626230

TTGTTACTATCGTTTGGTGTGGCAGATTTGGTGTTTTTCCAGAATGGAATGTTGGAACCGTGGCTTGAGAGTAAAGGTTTGAAAGATGGGAACCAAGTGTTGGCATATTTCGCAGTGTCAAAACTTGGAGAGTCCCCTATTGATGGTAAGACTGATACCAATCCTGAAGGATTGACAGCTGCTTATGGCAAGTGGTCTTTGGCTGTTTCTGAAAGATTGAAAGCTGGAGGCCTCTCTTGCAAGGTTTTGGATAAGGAAGCATTTCAAAAGCAGATGTTAGAGAAGCTCATATGGATTTGTTCTGTCATGCTTGTTGGAGCGCGTCATGGAGGGGTTTCTGTTGGTGTTGTGGAAAAGGAATTCCACCTTGAATTATGTAGCCTGATAGCAGAACTAGCATCAGCAGCAGCTAGTGAAAAGGGGTTAAAGTTTGAAGAAGCCATGGAAGACCGTTTGTGTGCGTACTCCCGAGCTGTTGCTCACTTTCCCACGGCAGTTAAGGAGTTCAAATGGAGGAATGGTTGGTTTTATGCTCTTTCTGAGAAGGCTATTGCCCAAGGCAAGCAGGATCCATGTCCTATGCATACCAAATGGCTTAAAGAGTTGAAAATTGTATAA

Protein sequence

>Msa0626230

LLLSFGVADLVFFQNGMLEPWLESKGLKDGNQVLAYFAVSKLGESPIDGKTDTNPEGLTAAYGKWSLAVSERLKAGGLSCKVLDKEAFQKQMLEKLIWICSVMLVGARHGGVSVGVVEKEFHLELCSLIAELASAAASEKGLKFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYALSEKAIAQGKQDPCPMHTKWLKELKIV*