AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0287300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287300 MtrunA17_Chr2g0304251 85.714 84 12 0 14 97 73 156 2.31e-46 155
Msa0287300 MtrunA17_Chr4g0064851 60.465 86 32 1 14 97 75 160 2.87e-31 114
Msa0287300 MtrunA17_Chr4g0061271 46.316 95 50 1 4 97 50 144 2.97e-24 95.1
Msa0287300 MtrunA17_Chr5g0418671 49.398 83 42 0 15 97 59 141 3.16e-24 94.7
Msa0287300 MtrunA17_Chr3g0086291 45.455 88 46 1 12 97 59 146 2.00e-22 89.7
Msa0287300 MtrunA17_Chr3g0086271 46.429 84 45 0 14 97 61 144 2.08e-22 89.7
Msa0287300 MtrunA17_Chr3g0086251 46.429 84 45 0 14 97 170 253 3.88e-22 89.0
Msa0287300 MtrunA17_Chr3g0086241 45.455 88 46 1 12 97 59 146 1.01e-21 87.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287300 AT5G34940.2 57.143 84 36 0 14 97 67 150 2.59e-31 115
Msa0287300 AT5G34940.3 50.000 84 42 0 14 97 67 150 3.08e-26 99.8
Msa0287300 AT5G07830.1 48.193 83 43 0 15 97 67 149 5.16e-24 94.7
Msa0287300 AT5G61250.3 44.578 83 46 0 15 97 64 146 1.85e-22 90.5
Msa0287300 AT5G61250.1 44.578 83 46 0 15 97 64 146 1.85e-22 90.5
Msa0287300 AT5G61250.2 44.578 83 46 0 15 97 64 146 1.85e-22 90.5

Find 120 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGATGCAACGTGGTTTA+AGG 0.142167 2_3:-29642803 Msa0287300:three_prime_UTR
TTTGGATTGAATGCCCTTTA+TGG 0.158147 2_3:-29643193 Msa0287300:three_prime_UTR
GATTATGTCTATATACTATT+TGG 0.187068 2_3:-29644814 Msa0287300:CDS
TTGTATCATTAACAGGTATT+TGG 0.205946 2_3:-29642037 Msa0287300:intron
TGACTAATGGATTCGCCTTC+TGG 0.215158 2_3:-29643281 Msa0287300:three_prime_UTR
ATGCATTTGTGTATAGTTTC+TGG 0.217121 2_3:-29642297 Msa0287300:intron
ATTGTTAAACTGTTTATGTT+AGG 0.260046 2_3:-29643228 Msa0287300:three_prime_UTR
GAGAAAGGAGCAATCCTTAT+TGG 0.269954 2_3:+29640763 None:intergenic
TTGCAAGATGAACTGGTATA+TGG 0.282033 2_3:-29643498 Msa0287300:CDS
ATATTTGCAGTGCTCTTCTT+TGG 0.283909 2_3:-29641242 Msa0287300:intron
TATACCTGATGCTGTTGTTC+TGG 0.327866 2_3:-29640725 Msa0287300:three_prime_UTR
TGATTCTGGAAATGGGTTCT+TGG 0.346192 2_3:-29644842 None:intergenic
GTCTGGATTGGGAAGGAAAT+TGG 0.347707 2_3:+29641927 None:intergenic
TATTGCAGACAGAGTTTGAT+AGG 0.355616 2_3:-29641976 Msa0287300:three_prime_UTR
CACTAGGTGAAACCGAAAAT+TGG 0.368660 2_3:-29640683 Msa0287300:three_prime_UTR
AGAAACACATCTGCAATGTT+TGG 0.370641 2_3:-29643438 Msa0287300:CDS
CGACGGTTGTGTTGTTGTCC+AGG 0.381277 2_3:+29641019 None:intergenic
GTAAGGCATCTTTCTATGTA+AGG 0.381689 2_3:+29640969 None:intergenic
TAAGCTCATCAAAGCCAATA+AGG 0.386395 2_3:-29640777 Msa0287300:three_prime_UTR
TATGGAAAGTCGGTACATAA+TGG 0.393891 2_3:-29643175 Msa0287300:three_prime_UTR
ACAGCATGGGTTGGTGAGTC+AGG 0.398551 2_3:-29642355 Msa0287300:three_prime_UTR
TTTGATGAGCTTACATATAG+AGG 0.399936 2_3:+29640787 None:intergenic
ATGTACCGACTTTCCATAAA+GGG 0.407723 2_3:+29643180 None:intergenic
GCAGATGTGTTTCTAACAAA+AGG 0.408452 2_3:+29643447 None:intergenic
CCTCCAGGCGCAATGACTAA+TGG 0.413718 2_3:+29642829 None:intergenic
TTGTTAAACTGTTTATGTTA+GGG 0.418016 2_3:-29643227 Msa0287300:three_prime_UTR
TCTTCTTTGGCACCGACTCA+TGG 0.418252 2_3:-29641229 Msa0287300:three_prime_UTR
TTCCACCCTGTGGAGTTAGA+TGG 0.421853 2_3:+29640887 None:intergenic
GAAATTCATGGATGGGAACT+TGG 0.427992 2_3:-29643082 Msa0287300:intron
AGTTTGATAGGAGGAAACTA+TGG 0.431640 2_3:-29641964 Msa0287300:three_prime_UTR
TCACCATTGAAACTGAGATT+AGG 0.436550 2_3:-29643528 Msa0287300:CDS
TACCTATAGTAGTCTGGATT+GGG 0.447932 2_3:+29641916 None:intergenic
ACAACCGTCGAAGCGACATT+TGG 0.448324 2_3:-29641006 Msa0287300:three_prime_UTR
ATTTAATACCTATAGTAGTC+TGG 0.451269 2_3:+29641910 None:intergenic
GTACTATCAACTACCTTCTC+AGG 0.451571 2_3:-29641198 Msa0287300:three_prime_UTR
ACACACCACATTTATAGCCT+TGG 0.452398 2_3:-29642742 Msa0287300:three_prime_UTR
ATACCTATAGTAGTCTGGAT+TGG 0.458022 2_3:+29641915 None:intergenic
TCTCAGTTTCAATGGTGAAA+AGG 0.460420 2_3:+29643533 None:intergenic
TGGCAGTTTGCAAGATGAAC+TGG 0.463605 2_3:-29643505 Msa0287300:CDS
AGTTCATCCCATCTTGGCAT+TGG 0.469463 2_3:+29643396 None:intergenic
TGCATTCAATTAATAACCAC+AGG 0.469712 2_3:+29640547 None:intergenic
TGCAAGATGAACTGGTATAT+GGG 0.470523 2_3:-29643497 Msa0287300:CDS
TCGTTTATTCAATACACTGT+TGG 0.471428 2_3:-29643115 Msa0287300:three_prime_UTR
TGATTAAGTTCATCCCATCT+TGG 0.471533 2_3:+29643390 None:intergenic
CAAGCCAGAACAACAGCATC+AGG 0.472171 2_3:+29640721 None:intergenic
GTCCAGGTTGATCAATAGTA+TGG 0.473426 2_3:+29641035 None:intergenic
TTCCCAATCCAGACTACTAT+AGG 0.475408 2_3:-29641918 Msa0287300:intron
ATCTAATAAATCTGTGGATG+TGG 0.485447 2_3:-29642767 Msa0287300:three_prime_UTR
CCACCTAATCTCAGTTTCAA+TGG 0.488877 2_3:+29643525 None:intergenic
TTAAGAAAATCTTGTTGTTG+AGG 0.489628 2_3:+29643689 None:intergenic
AACCGAAAATTGGTGTTACT+TGG 0.489973 2_3:-29640673 Msa0287300:three_prime_UTR
TATGTACCGACTTTCCATAA+AGG 0.490448 2_3:+29643179 None:intergenic
TTGAATAAACGATTCGGCAT+TGG 0.492524 2_3:+29643126 None:intergenic
GGAAAGAACTATGAAATTCA+TGG 0.493133 2_3:-29643094 Msa0287300:three_prime_UTR
CATCCCATCTTGGCATTGGA+AGG 0.497102 2_3:+29643400 None:intergenic
AGCCAAGTCATGTTACTGAA+TGG 0.504434 2_3:-29640856 Msa0287300:three_prime_UTR
CTTCTTTGGCACCGACTCAT+GGG 0.507966 2_3:-29641228 Msa0287300:three_prime_UTR
CATGGGTTGGTGAGTCAGGA+GGG 0.509443 2_3:-29642351 Msa0287300:three_prime_UTR
AGTGTATTGAATAAACGATT+CGG 0.509792 2_3:+29643120 None:intergenic
CTTACATATAGAGGCTTCAA+AGG 0.510130 2_3:+29640796 None:intergenic
GGTGCCTTCCAATGCCAAGA+TGG 0.519720 2_3:-29643404 Msa0287300:CDS
TGTCTATATACTATTTGGCA+TGG 0.521164 2_3:-29644809 Msa0287300:CDS
AGAGACAAAACTACATTCAA+AGG 0.521273 2_3:-29642415 Msa0287300:three_prime_UTR
CACCATACTATTGATCAACC+TGG 0.524123 2_3:-29641037 Msa0287300:three_prime_UTR
TTCCATTCAGTAACATGACT+TGG 0.524741 2_3:+29640854 None:intergenic
TGAGAAAATACAATGGAGAA+AGG 0.526211 2_3:+29640748 None:intergenic
TATCTTGTTTGTTCCTGAGA+AGG 0.526469 2_3:+29641185 None:intergenic
AGAACTATGAAATTCATGGA+TGG 0.527137 2_3:-29643090 Msa0287300:three_prime_UTR
GTATGCACTCGCGTGAGCGC+AGG 0.529697 2_3:-29643323 Msa0287300:three_prime_UTR
AAGCCATTAGTCATTGCGCC+TGG 0.532443 2_3:-29642832 Msa0287300:three_prime_UTR
TTTCTAACAAAAGGAGTGCA+TGG 0.533788 2_3:+29643456 None:intergenic
GAACTATGAAATTCATGGAT+GGG 0.542759 2_3:-29643089 Msa0287300:three_prime_UTR
GTTGCATCAAAGAAACCTCC+AGG 0.545777 2_3:+29642814 None:intergenic
GGCGCAATGACTAATGGCTT+AGG 0.552752 2_3:+29642835 None:intergenic
GTGCCTTCCAATGCCAAGAT+GGG 0.557147 2_3:-29643403 Msa0287300:CDS
TGGCACCGACTCATGGGAAG+CGG 0.557248 2_3:-29641222 Msa0287300:three_prime_UTR
TGGCAGGCAATGAATTGAGT+GGG 0.557347 2_3:-29642951 Msa0287300:intron
TTGTCTCTATCAAGATAGGA+AGG 0.557907 2_3:+29642430 None:intergenic
ATCGCCAAATGTCGCTTCGA+CGG 0.560109 2_3:+29641002 None:intergenic
TCGGCATTGGTGTAGTTCCA+AGG 0.562201 2_3:+29643139 None:intergenic
AGAGTACCATCTAACTCCAC+AGG 0.562210 2_3:-29640893 Msa0287300:three_prime_UTR
CACATTTATAGCCTTGGACC+AGG 0.565926 2_3:-29642736 Msa0287300:intron
GCATGGGTTGGTGAGTCAGG+AGG 0.569855 2_3:-29642352 Msa0287300:three_prime_UTR
ATGGGTTGGTGAGTCAGGAG+GGG 0.574317 2_3:-29642350 Msa0287300:three_prime_UTR
ACCAACCCATGCTGTTGCTG+AGG 0.580019 2_3:+29642363 None:intergenic
CAGGAACCTCAGCAACAGCA+TGG 0.580368 2_3:-29642369 Msa0287300:three_prime_UTR
ACCTCAGCAACAGCATGGGT+TGG 0.582674 2_3:-29642364 Msa0287300:three_prime_UTR
CCATTGAAACTGAGATTAGG+TGG 0.583219 2_3:-29643525 Msa0287300:CDS
CTATGTATATTTCCACCCTG+TGG 0.586599 2_3:+29640877 None:intergenic
GCGGCTAGCAATGTTGCACT+AGG 0.587041 2_3:-29640699 Msa0287300:three_prime_UTR
ATGGTTATACAGAAGGACCT+TGG 0.589347 2_3:-29643156 Msa0287300:three_prime_UTR
ATGCATCGGATACAAGATGA+TGG 0.592109 2_3:+29642314 None:intergenic
GGCGAAAAGTACCTGGTCCA+AGG 0.595921 2_3:+29642725 None:intergenic
GCAATGTTTGGATTCTCACA+AGG 0.596531 2_3:-29643426 Msa0287300:CDS
TGGATTGGGAAGGAAATTGG+TGG 0.602050 2_3:+29641930 None:intergenic
GAATGCCCTTTATGGAAAGT+CGG 0.602404 2_3:-29643185 Msa0287300:three_prime_UTR
GTACATAATGGTTATACAGA+AGG 0.609586 2_3:-29643163 Msa0287300:three_prime_UTR
AAGCAAATCTAATAAATCTG+TGG 0.613723 2_3:-29642773 Msa0287300:three_prime_UTR
CTGGCAGGCAATGAATTGAG+TGG 0.614470 2_3:-29642952 Msa0287300:intron
GATGCTGTTGTTCTGGCTTG+CGG 0.614871 2_3:-29640718 Msa0287300:three_prime_UTR
GAAACTATACACAAATGCAT+CGG 0.619169 2_3:+29642300 None:intergenic
GCATAGTTTACAAGTCCAGA+AGG 0.620597 2_3:+29643266 None:intergenic
TGCAGACAGAGTTTGATAGG+AGG 0.621831 2_3:-29641973 Msa0287300:three_prime_UTR
AACAGGTATTTGGATCAACT+CGG 0.623593 2_3:-29642027 Msa0287300:intron
AGGAGTTGATACGCACCTTG+TGG 0.627565 2_3:-29642467 Msa0287300:three_prime_UTR
CCATTAGTCATTGCGCCTGG+AGG 0.629727 2_3:-29642829 Msa0287300:three_prime_UTR
AGGAACCTCAGCAACAGCAT+GGG 0.631168 2_3:-29642368 Msa0287300:three_prime_UTR
CTGGTCCAAGGCTATAAATG+TGG 0.631236 2_3:+29642737 None:intergenic
ACATATAGAGGCTTCAAAGG+AGG 0.639329 2_3:+29640799 None:intergenic
CAATGTTTGGATTCTCACAA+GGG 0.640318 2_3:-29643425 Msa0287300:CDS
TATAGTAGTCTGGATTGGGA+AGG 0.650930 2_3:+29641920 None:intergenic
GGCAGGCAATGAATTGAGTG+GGG 0.653685 2_3:-29642950 Msa0287300:intron
GTACACCGCTTCCCATGAGT+CGG 0.659571 2_3:+29641217 None:intergenic
GAGGTTTCTTTGATGCAACG+TGG 0.664358 2_3:-29642810 Msa0287300:three_prime_UTR
TCAGGAGGGGCTTATAACAG+TGG 0.681174 2_3:-29642337 Msa0287300:three_prime_UTR
AGGTATATGAGAAAATACAA+TGG 0.684429 2_3:+29640741 None:intergenic
TACCATCTAACTCCACAGGG+TGG 0.701843 2_3:-29640889 Msa0287300:three_prime_UTR
GAGTACCATCTAACTCCACA+GGG 0.705711 2_3:-29640892 Msa0287300:three_prime_UTR
GCATTCAATTAATAACCACA+GGG 0.706925 2_3:+29640548 None:intergenic
GCAGGCAATGAATTGAGTGG+GGG 0.733139 2_3:-29642949 Msa0287300:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAGATAAAGAAAA+AGG + chr2_3:29640770-29640789 None:intergenic 10.0%
!! TTATTAATTAATTAACTTCT+TGG - chr2_3:29641314-29641333 Msa0287300:intron 10.0%
!! CTATTAATCAATAAATTAAA+TGG + chr2_3:29641545-29641564 None:intergenic 10.0%
!!! TATTGTTATTGTGATAAAAA+TGG - chr2_3:29641711-29641730 Msa0287300:intron 15.0%
!!! TTCATTATTTTTGAATTGTA+AGG + chr2_3:29644392-29644411 None:intergenic 15.0%
!! GATTATGTCTATATACTATT+TGG - chr2_3:29640527-29640546 Msa0287300:three_prime_UTR 20.0%
!! AAAGATAAAGAAAAAGGAAA+AGG + chr2_3:29640764-29640783 None:intergenic 20.0%
!! ATTGTTAAACTGTTTATGTT+AGG - chr2_3:29642113-29642132 Msa0287300:intron 20.0%
!! TTGTTAAACTGTTTATGTTA+GGG - chr2_3:29642114-29642133 Msa0287300:intron 20.0%
!!! AGAAATAATTGATGATTTGA+AGG + chr2_3:29642830-29642849 None:intergenic 20.0%
!!! TACTTTCAATAACATTTTTC+AGG + chr2_3:29642952-29642971 None:intergenic 20.0%
!!! AAAAATGTTATTGAAAGTAC+AGG - chr2_3:29642953-29642972 Msa0287300:intron 20.0%
!! AAGAATGAGAAACATTATTA+TGG - chr2_3:29643558-29643577 Msa0287300:intron 20.0%
!!! TTTTTTGTTTGTTGAGAAAT+AGG - chr2_3:29644747-29644766 Msa0287300:intron 20.0%
!!! TGATTTTATTTGTGCAACTT+TGG - chr2_3:29640662-29640681 Msa0287300:three_prime_UTR 25.0%
! TGTTTGTCTTGAAATCTTTA+AGG - chr2_3:29640796-29640815 Msa0287300:three_prime_UTR 25.0%
!!! TTTTTATTTGCAGATTAGCT+TGG + chr2_3:29641113-29641132 None:intergenic 25.0%
!!! TCTTGTTTTCTACAAACAAT+GGG + chr2_3:29641189-29641208 None:intergenic 25.0%
!!! ATCTTGTTTTCTACAAACAA+TGG + chr2_3:29641190-29641209 None:intergenic 25.0%
!!! AAATCTTGTGCATTTTTTCA+AGG - chr2_3:29641587-29641606 Msa0287300:intron 25.0%
!!! TTAAGAAAATCTTGTTGTTG+AGG + chr2_3:29641655-29641674 None:intergenic 25.0%
!! ATTTTCTTAAATGCAGTGAA+AGG - chr2_3:29641665-29641684 Msa0287300:intron 25.0%
! TATCACAATAACAATAGAGA+TGG + chr2_3:29641707-29641726 None:intergenic 25.0%
! AATCATTTCTTCCAAAAATC+AGG - chr2_3:29641969-29641988 Msa0287300:three_prime_UTR 25.0%
! ATCATTTCTTCCAAAAATCA+GGG - chr2_3:29641970-29641989 Msa0287300:three_prime_UTR 25.0%
! AGTGTATTGAATAAACGATT+CGG + chr2_3:29642224-29642243 None:intergenic 25.0%
! AATAAAATTCTTCTTGCCTA+AGG - chr2_3:29642334-29642353 Msa0287300:three_prime_UTR 25.0%
! AAGCAAATCTAATAAATCTG+TGG - chr2_3:29642568-29642587 Msa0287300:intron 25.0%
! TGTATGATTGTATCATTAAC+AGG - chr2_3:29643297-29643316 Msa0287300:three_prime_UTR 25.0%
! TTGTATCATTAACAGGTATT+TGG - chr2_3:29643304-29643323 Msa0287300:three_prime_UTR 25.0%
! ATTTAATACCTATAGTAGTC+TGG + chr2_3:29643434-29643453 None:intergenic 25.0%
!! TTCAATGTGTTAGTTCATTT+TGG - chr2_3:29643614-29643633 Msa0287300:intron 25.0%
!! TCAATGTGTTAGTTCATTTT+GGG - chr2_3:29643615-29643634 Msa0287300:intron 25.0%
! CTTAATATATGTGTCATGTT+TGG - chr2_3:29643963-29643982 Msa0287300:intron 25.0%
! ATGTTACCATGAAAATACTA+TGG + chr2_3:29644054-29644073 None:intergenic 25.0%
!! TTTTCATGGTAACATTTTTG+TGG - chr2_3:29644059-29644078 Msa0287300:intron 25.0%
! TCATTCACTTGATATTCATA+GGG + chr2_3:29644231-29644250 None:intergenic 25.0%
! ATCATTCACTTGATATTCAT+AGG + chr2_3:29644232-29644251 None:intergenic 25.0%
!!! TTTTCAATTGAACTTTGAAG+AGG + chr2_3:29644419-29644438 None:intergenic 25.0%
! AGGTATATGAGAAAATACAA+TGG + chr2_3:29644603-29644622 None:intergenic 25.0%
TGTCTATATACTATTTGGCA+TGG - chr2_3:29640532-29640551 Msa0287300:three_prime_UTR 30.0%
! GTTATGATGATGTGAAGAAA+GGG - chr2_3:29640595-29640614 Msa0287300:three_prime_UTR 30.0%
AAAGGGAATGTTATGATTGA+TGG - chr2_3:29640612-29640631 Msa0287300:three_prime_UTR 30.0%
TTATTTGTGCAACTTTGGAT+TGG - chr2_3:29640667-29640686 Msa0287300:three_prime_UTR 30.0%
ACACTTGTAATTACATGTGT+CGG + chr2_3:29640898-29640917 None:intergenic 30.0%
ACACATGTAATTACAAGTGT+CGG - chr2_3:29640898-29640917 Msa0287300:three_prime_UTR 30.0%
!! TGTTTTCGAAATGTTGTTTG+AGG - chr2_3:29641066-29641085 Msa0287300:intron 30.0%
!!! CAGAACATTGTTGCTTTTTA+TGG + chr2_3:29641139-29641158 None:intergenic 30.0%
! ATAATAATCCTGTTTTCTGC+AGG - chr2_3:29641276-29641295 Msa0287300:intron 30.0%
! TAATAATCCTGTTTTCTGCA+GGG - chr2_3:29641277-29641296 Msa0287300:intron 30.0%
!! TAATTTTGATCTATGAAGCG+CGG - chr2_3:29641346-29641365 Msa0287300:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr2_3:29641424-29641443 Msa0287300:intron 30.0%
! CCAAATTTTACCCTGATTTT+TGG + chr2_3:29641983-29642002 None:intergenic 30.0%
CCAAAAATCAGGGTAAAATT+TGG - chr2_3:29641980-29641999 Msa0287300:three_prime_UTR 30.0%
! GTTAGGGCTAAGATTATTTT+TGG - chr2_3:29642130-29642149 Msa0287300:intron 30.0%
GTACATAATGGTTATACAGA+AGG - chr2_3:29642178-29642197 Msa0287300:intron 30.0%
TCGTTTATTCAATACACTGT+TGG - chr2_3:29642226-29642245 Msa0287300:intron 30.0%
GGAAAGAACTATGAAATTCA+TGG - chr2_3:29642247-29642266 Msa0287300:intron 30.0%
AGAACTATGAAATTCATGGA+TGG - chr2_3:29642251-29642270 Msa0287300:intron 30.0%
GAACTATGAAATTCATGGAT+GGG - chr2_3:29642252-29642271 Msa0287300:intron 30.0%
ATCTAATAAATCTGTGGATG+TGG - chr2_3:29642574-29642593 Msa0287300:intron 30.0%
GTAATGAATATCAGCCAATT+CGG + chr2_3:29642640-29642659 None:intergenic 30.0%
CAGTGTTAAACTACTTTACA+CGG + chr2_3:29642714-29642733 None:intergenic 30.0%
!!! AAGTTCTTTATTTTGCCACA+TGG + chr2_3:29642762-29642781 None:intergenic 30.0%
!! ACTTAATTTGTCTTCTACAC+AGG - chr2_3:29642854-29642873 Msa0287300:three_prime_UTR 30.0%
!!! GATTCAGAATTTTTTCCACA+AGG + chr2_3:29642892-29642911 None:intergenic 30.0%
!! AGTTTTGTCTCTATCAAGAT+AGG + chr2_3:29642918-29642937 None:intergenic 30.0%
AGAGACAAAACTACATTCAA+AGG - chr2_3:29642926-29642945 Msa0287300:three_prime_UTR 30.0%
GAAACTATACACAAATGCAT+CGG + chr2_3:29643044-29643063 None:intergenic 30.0%
ATGCATTTGTGTATAGTTTC+TGG - chr2_3:29643044-29643063 Msa0287300:intron 30.0%
TCCTTGATTTAGACTCATTT+AGG - chr2_3:29643087-29643106 Msa0287300:three_prime_UTR 30.0%
CCTTGATTTAGACTCATTTA+GGG - chr2_3:29643088-29643107 Msa0287300:three_prime_UTR 30.0%
CTTGATTTAGACTCATTTAG+GGG - chr2_3:29643089-29643108 Msa0287300:three_prime_UTR 30.0%
TTGAATGTAACCACATGTAT+TGG + chr2_3:29643188-29643207 None:intergenic 30.0%
ATGTTTCTCATTCTTTAGCA+AGG + chr2_3:29643553-29643572 None:intergenic 30.0%
GAACTAACACATTGAAAAAG+TGG + chr2_3:29643610-29643629 None:intergenic 30.0%
ATGATGAGAATCAATGCTAA+GGG + chr2_3:29643720-29643739 None:intergenic 30.0%
TATGATGAGAATCAATGCTA+AGG + chr2_3:29643721-29643740 None:intergenic 30.0%
!! CATTGATTCTCATCATATCA+CGG - chr2_3:29643724-29643743 Msa0287300:intron 30.0%
! AAAGCAATATAGAGTATTCG+AGG - chr2_3:29643878-29643897 Msa0287300:intron 30.0%
! TTGAAATAGGGAATTTTCCA+AGG + chr2_3:29644021-29644040 None:intergenic 30.0%
GGAAAATTCCCTATTTCAAA+TGG - chr2_3:29644022-29644041 Msa0287300:intron 30.0%
! ATCCATCCATAGTATTTTCA+TGG - chr2_3:29644045-29644064 Msa0287300:intron 30.0%
TACCATGAAAATACTATGGA+TGG + chr2_3:29644050-29644069 None:intergenic 30.0%
!! GTTTTAAGTGTAAACTCAGA+TGG - chr2_3:29644512-29644531 Msa0287300:intron 30.0%
TTTGATGAGCTTACATATAG+AGG + chr2_3:29644557-29644576 None:intergenic 30.0%
TGAGAAAATACAATGGAGAA+AGG + chr2_3:29644596-29644615 None:intergenic 30.0%
!!! TTTTTTTTTTTGCTTCCCTG+TGG - chr2_3:29644778-29644797 Msa0287300:intron 30.0%
GCATTCAATTAATAACCACA+GGG + chr2_3:29644796-29644815 None:intergenic 30.0%
TGCATTCAATTAATAACCAC+AGG + chr2_3:29644797-29644816 None:intergenic 30.0%
! GGTTATGATGATGTGAAGAA+AGG - chr2_3:29640594-29640613 Msa0287300:three_prime_UTR 35.0%
! ATTGATGGTAGTTCTGTGAT+TGG - chr2_3:29640627-29640646 Msa0287300:three_prime_UTR 35.0%
GTACCATAATCACATTTCTG+AGG + chr2_3:29640699-29640718 None:intergenic 35.0%
TGATTATGGTACATGTAGCT+GGG - chr2_3:29640707-29640726 Msa0287300:three_prime_UTR 35.0%
!! TGAGTTCTAGAATGTTTGCT+TGG - chr2_3:29640819-29640838 Msa0287300:three_prime_UTR 35.0%
CATTCTATGAAGCACAGATA+TGG - chr2_3:29640850-29640869 Msa0287300:three_prime_UTR 35.0%
! TTTGAGGTTTGAATGCATGT+TGG - chr2_3:29641082-29641101 Msa0287300:intron 35.0%
TTGAGGTTTGAATGCATGTT+GGG - chr2_3:29641083-29641102 Msa0287300:intron 35.0%
AGATCAAAACCTATGAAGCA+CGG + chr2_3:29641513-29641532 None:intergenic 35.0%
!!! TTTTTTTTTTCATCTCGCGC+AGG - chr2_3:29641628-29641647 Msa0287300:intron 35.0%
TCTCAGTTTCAATGGTGAAA+AGG + chr2_3:29641811-29641830 None:intergenic 35.0%
TCACCATTGAAACTGAGATT+AGG - chr2_3:29641813-29641832 Msa0287300:intron 35.0%
TTGCAAGATGAACTGGTATA+TGG - chr2_3:29641843-29641862 Msa0287300:intron 35.0%
TGCAAGATGAACTGGTATAT+GGG - chr2_3:29641844-29641863 Msa0287300:intron 35.0%
! TTTCTAACAAAAGGAGTGCA+TGG + chr2_3:29641888-29641907 None:intergenic 35.0%
! GCAGATGTGTTTCTAACAAA+AGG + chr2_3:29641897-29641916 None:intergenic 35.0%
AGAAACACATCTGCAATGTT+TGG - chr2_3:29641903-29641922 Msa0287300:intron 35.0%
CAATGTTTGGATTCTCACAA+GGG - chr2_3:29641916-29641935 Msa0287300:intron 35.0%
TGATTAAGTTCATCCCATCT+TGG + chr2_3:29641954-29641973 None:intergenic 35.0%
TTTGGATTGAATGCCCTTTA+TGG - chr2_3:29642148-29642167 Msa0287300:intron 35.0%
!! ATGTACCGACTTTCCATAAA+GGG + chr2_3:29642164-29642183 None:intergenic 35.0%
!! TATGTACCGACTTTCCATAA+AGG + chr2_3:29642165-29642184 None:intergenic 35.0%
TATGGAAAGTCGGTACATAA+TGG - chr2_3:29642166-29642185 Msa0287300:intron 35.0%
! TTGAATAAACGATTCGGCAT+TGG + chr2_3:29642218-29642237 None:intergenic 35.0%
! TTAGTCCTCTATTTTCCATG+TGG - chr2_3:29642744-29642763 Msa0287300:three_prime_UTR 35.0%
! TTTTGCCACATGGAAAATAG+AGG + chr2_3:29642752-29642771 None:intergenic 35.0%
TTGTCTCTATCAAGATAGGA+AGG + chr2_3:29642914-29642933 None:intergenic 35.0%
GAGTCTAAATCAAGGATCAA+GGG + chr2_3:29643083-29643102 None:intergenic 35.0%
TGAGTCTAAATCAAGGATCA+AGG + chr2_3:29643084-29643103 None:intergenic 35.0%
CCCTAAATGAGTCTAAATCA+AGG + chr2_3:29643091-29643110 None:intergenic 35.0%
! ATGCCTTCAATCTAAAGTGT+CGG + chr2_3:29643134-29643153 None:intergenic 35.0%
! ACTTTAGATTGAAGGCATGT+CGG - chr2_3:29643136-29643155 Msa0287300:three_prime_UTR 35.0%
AACAGGTATTTGGATCAACT+CGG - chr2_3:29643314-29643333 Msa0287300:three_prime_UTR 35.0%
TATTGCAGACAGAGTTTGAT+AGG - chr2_3:29643365-29643384 Msa0287300:exon 35.0%
AGTTTGATAGGAGGAAACTA+TGG - chr2_3:29643377-29643396 Msa0287300:CDS 35.0%
TACCTATAGTAGTCTGGATT+GGG + chr2_3:29643428-29643447 None:intergenic 35.0%
ATACCTATAGTAGTCTGGAT+TGG + chr2_3:29643429-29643448 None:intergenic 35.0%
! CAATATAGAGTATTCGAGGT+CGG - chr2_3:29643882-29643901 Msa0287300:intron 35.0%
ACATACAACTTTGTCTACCT+TGG - chr2_3:29644001-29644020 Msa0287300:intron 35.0%
! GGATGGATCCATTTGAAATA+GGG + chr2_3:29644033-29644052 None:intergenic 35.0%
! TGGATGGATCCATTTGAAAT+AGG + chr2_3:29644034-29644053 None:intergenic 35.0%
ATATTTGCAGTGCTCTTCTT+TGG - chr2_3:29644099-29644118 Msa0287300:intron 35.0%
! TATCTTGTTTGTTCCTGAGA+AGG + chr2_3:29644159-29644178 None:intergenic 35.0%
! GCATATTAGTTTCGATCTCA+AGG + chr2_3:29644264-29644283 None:intergenic 35.0%
ATATGCTTGATCTTACAGAG+AGG - chr2_3:29644278-29644297 Msa0287300:intron 35.0%
! GTAAGGCATCTTTCTATGTA+AGG + chr2_3:29644375-29644394 None:intergenic 35.0%
TTCCATTCAGTAACATGACT+TGG + chr2_3:29644490-29644509 None:intergenic 35.0%
CTTACATATAGAGGCTTCAA+AGG + chr2_3:29644548-29644567 None:intergenic 35.0%
TAAGCTCATCAAAGCCAATA+AGG - chr2_3:29644564-29644583 Msa0287300:intron 35.0%
!! AACCGAAAATTGGTGTTACT+TGG - chr2_3:29644668-29644687 Msa0287300:intron 35.0%
! CACCAAGTAACACCAATTTT+CGG + chr2_3:29644673-29644692 None:intergenic 35.0%
AACACAGTGAGTGATGAAAG+TGG - chr2_3:29640573-29640592 Msa0287300:three_prime_UTR 40.0%
! TTTGTGCAACTTTGGATTGG+TGG - chr2_3:29640670-29640689 Msa0287300:three_prime_UTR 40.0%
! CCATAATCACATTTCTGAGG+AGG + chr2_3:29640696-29640715 None:intergenic 40.0%
CCTCCTCAGAAATGTGATTA+TGG - chr2_3:29640693-29640712 Msa0287300:three_prime_UTR 40.0%
GTGATTATGGTACATGTAGC+TGG - chr2_3:29640706-29640725 Msa0287300:three_prime_UTR 40.0%
GATTATGGTACATGTAGCTG+GGG - chr2_3:29640708-29640727 Msa0287300:three_prime_UTR 40.0%
TCTTGCTTCTCTTCTCAATC+TGG - chr2_3:29640731-29640750 Msa0287300:three_prime_UTR 40.0%
CAATAAACCCTGCAGAAAAC+AGG + chr2_3:29641287-29641306 None:intergenic 40.0%
GTCGACACTGCTAATAATCT+GGG - chr2_3:29641385-29641404 Msa0287300:intron 40.0%
TCGACACTGCTAATAATCTG+GGG - chr2_3:29641386-29641405 Msa0287300:intron 40.0%
CCACCTAATCTCAGTTTCAA+TGG + chr2_3:29641819-29641838 None:intergenic 40.0%
CCATTGAAACTGAGATTAGG+TGG - chr2_3:29641816-29641835 Msa0287300:intron 40.0%
GCAATGTTTGGATTCTCACA+AGG - chr2_3:29641915-29641934 Msa0287300:intron 40.0%
! CGTGAGTGTTTTGTGACTAA+TGG - chr2_3:29642047-29642066 Msa0287300:intron 40.0%
GCATAGTTTACAAGTCCAGA+AGG + chr2_3:29642078-29642097 None:intergenic 40.0%
GAATGCCCTTTATGGAAAGT+CGG - chr2_3:29642156-29642175 Msa0287300:intron 40.0%
ATGGTTATACAGAAGGACCT+TGG - chr2_3:29642185-29642204 Msa0287300:intron 40.0%
GAAATTCATGGATGGGAACT+TGG - chr2_3:29642259-29642278 Msa0287300:intron 40.0%
ACTCAATGTACTCAAGCCTT+AGG + chr2_3:29642353-29642372 None:intergenic 40.0%
CTTTGATGCAACGTGGTTTA+AGG - chr2_3:29642538-29642557 Msa0287300:intron 40.0%
ACACACCACATTTATAGCCT+TGG - chr2_3:29642599-29642618 Msa0287300:intron 40.0%
ATGCATCGGATACAAGATGA+TGG + chr2_3:29643030-29643049 None:intergenic 40.0%
ACACCGACACTTTAGATTGA+AGG - chr2_3:29643128-29643147 Msa0287300:three_prime_UTR 40.0%
GTATCTAACGCCAATACATG+TGG - chr2_3:29643175-29643194 Msa0287300:three_prime_UTR 40.0%
! TATAGTAGTCTGGATTGGGA+AGG + chr2_3:29643424-29643443 None:intergenic 40.0%
TTCCCAATCCAGACTACTAT+AGG - chr2_3:29643423-29643442 Msa0287300:CDS 40.0%
!! CGGTTTTGTCCGTAGTTAAT+AGG - chr2_3:29643655-29643674 Msa0287300:intron 40.0%
! TCCAAGGTGCCTATTAACTA+CGG + chr2_3:29643667-29643686 None:intergenic 40.0%
TAGTTAATAGGCACCTTGGA+GGG - chr2_3:29643667-29643686 Msa0287300:intron 40.0%
ATTCACACATGCTAGCTGAA+AGG + chr2_3:29643787-29643806 None:intergenic 40.0%
AGACATTTGATTCCCACAGA+CGG - chr2_3:29643808-29643827 Msa0287300:intron 40.0%
GTACTATCAACTACCTTCTC+AGG - chr2_3:29644143-29644162 Msa0287300:intron 40.0%
CACCATACTATTGATCAACC+TGG - chr2_3:29644304-29644323 Msa0287300:intron 40.0%
!! GTCCAGGTTGATCAATAGTA+TGG + chr2_3:29644309-29644328 None:intergenic 40.0%
CTATGTATATTTCCACCCTG+TGG + chr2_3:29644467-29644486 None:intergenic 40.0%
AGCCAAGTCATGTTACTGAA+TGG - chr2_3:29644485-29644504 Msa0287300:intron 40.0%
ACATATAGAGGCTTCAAAGG+AGG + chr2_3:29644545-29644564 None:intergenic 40.0%
GAGAAAGGAGCAATCCTTAT+TGG + chr2_3:29644581-29644600 None:intergenic 40.0%
TATACCTGATGCTGTTGTTC+TGG - chr2_3:29644616-29644635 Msa0287300:intron 40.0%
CACTAGGTGAAACCGAAAAT+TGG - chr2_3:29644658-29644677 Msa0287300:intron 40.0%
TATGAAGCACGTACACTCCT+TGG + chr2_3:29640999-29641018 None:intergenic 45.0%
TCTGTTCTGTCACTGTTGTG+TGG + chr2_3:29641226-29641245 None:intergenic 45.0%
CGTCGACACTGCTAATAATC+TGG - chr2_3:29641384-29641403 Msa0287300:intron 45.0%
TGGCAGTTTGCAAGATGAAC+TGG - chr2_3:29641836-29641855 Msa0287300:intron 45.0%
AGTTCATCCCATCTTGGCAT+TGG + chr2_3:29641948-29641967 None:intergenic 45.0%
!! TGACTAATGGATTCGCCTTC+TGG - chr2_3:29642060-29642079 Msa0287300:intron 45.0%
ATTCATTGCCTGCCAGTGAA+AGG + chr2_3:29642385-29642404 None:intergenic 45.0%
TGGCAGGCAATGAATTGAGT+GGG - chr2_3:29642390-29642409 Msa0287300:three_prime_UTR 45.0%
GTTGCATCAAAGAAACCTCC+AGG + chr2_3:29642530-29642549 None:intergenic 45.0%
GAGGTTTCTTTGATGCAACG+TGG - chr2_3:29642531-29642550 Msa0287300:intron 45.0%
CTGGTCCAAGGCTATAAATG+TGG + chr2_3:29642607-29642626 None:intergenic 45.0%
! CACATTTATAGCCTTGGACC+AGG - chr2_3:29642605-29642624 Msa0287300:intron 45.0%
!! ATCGGTGTTGTTTCCAGTGT+CGG - chr2_3:29643231-29643250 Msa0287300:three_prime_UTR 45.0%
TGCAGACAGAGTTTGATAGG+AGG - chr2_3:29643368-29643387 Msa0287300:CDS 45.0%
! TGGATTGGGAAGGAAATTGG+TGG + chr2_3:29643414-29643433 None:intergenic 45.0%
! GTCTGGATTGGGAAGGAAAT+TGG + chr2_3:29643417-29643436 None:intergenic 45.0%
AAAGTGGTGTAGCAGACTTG+AGG + chr2_3:29643594-29643613 None:intergenic 45.0%
TCCGTAGTTAATAGGCACCT+TGG - chr2_3:29643663-29643682 Msa0287300:intron 45.0%
GTAGTTAATAGGCACCTTGG+AGG - chr2_3:29643666-29643685 Msa0287300:intron 45.0%
GCTAATGTTCCATGTGTGAG+AGG - chr2_3:29643832-29643851 Msa0287300:intron 45.0%
ATGTTCCATGTGTGAGAGGA+AGG - chr2_3:29643836-29643855 Msa0287300:intron 45.0%
GAAGGTCCAACTGTTTGTGT+CGG - chr2_3:29643854-29643873 Msa0287300:intron 45.0%
! GCTTTTCCGACACAAACAGT+TGG + chr2_3:29643863-29643882 None:intergenic 45.0%
! AGAGTACCATCTAACTCCAC+AGG - chr2_3:29644448-29644467 Msa0287300:intron 45.0%
GAGTACCATCTAACTCCACA+GGG - chr2_3:29644449-29644468 Msa0287300:intron 45.0%
!!! TTCATTTTTAAAATTATTAT+CGG - chr2_3:29643213-29643232 Msa0287300:three_prime_UTR 5.0%
GCACAGATATGGACACGACA+TGG - chr2_3:29640861-29640880 Msa0287300:three_prime_UTR 50.0%
!! TACAAGTGTCGGTGTCGTGA+CGG - chr2_3:29640909-29640928 Msa0287300:three_prime_UTR 50.0%
ATACGACACGTGTTCGACAC+CGG - chr2_3:29640961-29640980 Msa0287300:three_prime_UTR 50.0%
GCACGTACACTCCTTGGATT+AGG + chr2_3:29640993-29641012 None:intergenic 50.0%
TGATCTATGAAGCGCGGACA+CGG - chr2_3:29641352-29641371 Msa0287300:intron 50.0%
!! TGTCGGTGTCATGTCGATGT+CGG - chr2_3:29641441-29641460 Msa0287300:intron 50.0%
TATGAAGCACGGACACTCCT+CGG + chr2_3:29641502-29641521 None:intergenic 50.0%
GTGCCTTCCAATGCCAAGAT+GGG - chr2_3:29641938-29641957 Msa0287300:three_prime_UTR 50.0%
! CATCCCATCTTGGCATTGGA+AGG + chr2_3:29641944-29641963 None:intergenic 50.0%
!! TCGGCATTGGTGTAGTTCCA+AGG + chr2_3:29642205-29642224 None:intergenic 50.0%
AGTGAGCTAGCTCCTTTCAC+TGG - chr2_3:29642370-29642389 Msa0287300:three_prime_UTR 50.0%
CTGGCAGGCAATGAATTGAG+TGG - chr2_3:29642389-29642408 Msa0287300:three_prime_UTR 50.0%
GGCAGGCAATGAATTGAGTG+GGG - chr2_3:29642391-29642410 Msa0287300:three_prime_UTR 50.0%
GCAGGCAATGAATTGAGTGG+GGG - chr2_3:29642392-29642411 Msa0287300:three_prime_UTR 50.0%
GGCGCAATGACTAATGGCTT+AGG + chr2_3:29642509-29642528 None:intergenic 50.0%
AAGCCATTAGTCATTGCGCC+TGG - chr2_3:29642509-29642528 Msa0287300:intron 50.0%
!! CCAATTCGGCGAAAAGTACC+TGG + chr2_3:29642626-29642645 None:intergenic 50.0%
! CCAGGTACTTTTCGCCGAAT+TGG - chr2_3:29642623-29642642 Msa0287300:intron 50.0%
!! AGGAGTTGATACGCACCTTG+TGG - chr2_3:29642874-29642893 Msa0287300:three_prime_UTR 50.0%
AGGAACCTCAGCAACAGCAT+GGG - chr2_3:29642973-29642992 Msa0287300:intron 50.0%
TCAGGAGGGGCTTATAACAG+TGG - chr2_3:29643004-29643023 Msa0287300:intron 50.0%
! TGTCGGTGTTCGACACTTGT+TGG - chr2_3:29643153-29643172 Msa0287300:three_prime_UTR 50.0%
TGGTGTAGCAGACTTGAGGT+CGG + chr2_3:29643590-29643609 None:intergenic 50.0%
! GGGTCTTGTGTAAGCTGTCA+CGG - chr2_3:29643635-29643654 Msa0287300:intron 50.0%
CTTGGAGGGTAGATTAGCGT+GGG - chr2_3:29643681-29643700 Msa0287300:CDS 50.0%
TAGCCCACTGTCAAGGCTAA+GGG - chr2_3:29643752-29643771 Msa0287300:intron 50.0%
TGTCAAGGCTAAGGGGCTAA+AGG - chr2_3:29643760-29643779 Msa0287300:intron 50.0%
TTGGACCTTCCTCTCACACA+TGG + chr2_3:29643844-29643863 None:intergenic 50.0%
GAGTATTCGAGGTCGGAACA+TGG - chr2_3:29643889-29643908 Msa0287300:intron 50.0%
!! TCTTCTTTGGCACCGACTCA+TGG - chr2_3:29644112-29644131 Msa0287300:intron 50.0%
!! CTTCTTTGGCACCGACTCAT+GGG - chr2_3:29644113-29644132 Msa0287300:intron 50.0%
ACAACCGTCGAAGCGACATT+TGG - chr2_3:29644335-29644354 Msa0287300:intron 50.0%
! ATCGCCAAATGTCGCTTCGA+CGG + chr2_3:29644342-29644361 None:intergenic 50.0%
TACCATCTAACTCCACAGGG+TGG - chr2_3:29644452-29644471 Msa0287300:intron 50.0%
TTCCACCCTGTGGAGTTAGA+TGG + chr2_3:29644457-29644476 None:intergenic 50.0%
CAAGCCAGAACAACAGCATC+AGG + chr2_3:29644623-29644642 None:intergenic 50.0%
!! GATGCTGTTGTTCTGGCTTG+CGG - chr2_3:29644623-29644642 Msa0287300:intron 50.0%
GTGTCGGACACGACATGTGT+CGG - chr2_3:29640931-29640950 Msa0287300:three_prime_UTR 55.0%
! GACACGACATGTGTCGGTGT+CGG - chr2_3:29640937-29640956 Msa0287300:three_prime_UTR 55.0%
! ACACGACATGTGTCGGTGTC+GGG - chr2_3:29640938-29640957 Msa0287300:three_prime_UTR 55.0%
TACGACACGTGTTCGACACC+GGG - chr2_3:29640962-29640981 Msa0287300:three_prime_UTR 55.0%
! TCCTTGGATTAGGCGTGTCC+CGG + chr2_3:29640983-29641002 None:intergenic 55.0%
ATGAAGCACGGACACTCCTC+GGG + chr2_3:29641501-29641520 None:intergenic 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - chr2_3:29641501-29641520 Msa0287300:intron 55.0%
GGTGCCTTCCAATGCCAAGA+TGG - chr2_3:29641937-29641956 Msa0287300:three_prime_UTR 55.0%
AGCTAGCTCCTTTCACTGGC+AGG - chr2_3:29642374-29642393 Msa0287300:three_prime_UTR 55.0%
GGCAATGAATTGAGTGGGGG+TGG - chr2_3:29642395-29642414 Msa0287300:three_prime_UTR 55.0%
GAATTGAGTGGGGGTGGAGT+TGG - chr2_3:29642401-29642420 Msa0287300:three_prime_UTR 55.0%
CCTCCAGGCGCAATGACTAA+TGG + chr2_3:29642515-29642534 None:intergenic 55.0%
CCATTAGTCATTGCGCCTGG+AGG - chr2_3:29642512-29642531 Msa0287300:intron 55.0%
!! GGCGAAAAGTACCTGGTCCA+AGG + chr2_3:29642619-29642638 None:intergenic 55.0%
CAGGAACCTCAGCAACAGCA+TGG - chr2_3:29642972-29642991 Msa0287300:intron 55.0%
ACCTCAGCAACAGCATGGGT+TGG - chr2_3:29642977-29642996 Msa0287300:intron 55.0%
ACCAACCCATGCTGTTGCTG+AGG + chr2_3:29642981-29643000 None:intergenic 55.0%
!! ACAGCATGGGTTGGTGAGTC+AGG - chr2_3:29642986-29643005 Msa0287300:intron 55.0%
!! CATGGGTTGGTGAGTCAGGA+GGG - chr2_3:29642990-29643009 Msa0287300:intron 55.0%
!! ATGGGTTGGTGAGTCAGGAG+GGG - chr2_3:29642991-29643010 Msa0287300:intron 55.0%
TGTAGCACAGACACCGACAC+TGG + chr2_3:29643247-29643266 None:intergenic 55.0%
CCACGCTAATCTACCCTCCA+AGG + chr2_3:29643683-29643702 None:intergenic 55.0%
CCTTGGAGGGTAGATTAGCG+TGG - chr2_3:29643680-29643699 Msa0287300:CDS 55.0%
GGAACAGTAGCCCACTGTCA+AGG - chr2_3:29643745-29643764 Msa0287300:intron 55.0%
GTAGCCCACTGTCAAGGCTA+AGG - chr2_3:29643751-29643770 Msa0287300:intron 55.0%
AGCCCACTGTCAAGGCTAAG+GGG - chr2_3:29643753-29643772 Msa0287300:intron 55.0%
!! AGCCCCTTAGCCTTGACAGT+GGG + chr2_3:29643758-29643777 None:intergenic 55.0%
!! TAGCCCCTTAGCCTTGACAG+TGG + chr2_3:29643759-29643778 None:intergenic 55.0%
GGAACATTAGCGCCGTCTGT+GGG + chr2_3:29643823-29643842 None:intergenic 55.0%
TGGAACATTAGCGCCGTCTG+TGG + chr2_3:29643824-29643843 None:intergenic 55.0%
GTACACCGCTTCCCATGAGT+CGG + chr2_3:29644127-29644146 None:intergenic 55.0%
! CGACGGTTGTGTTGTTGTCC+AGG + chr2_3:29644325-29644344 None:intergenic 55.0%
GCGGCTAGCAATGTTGCACT+AGG - chr2_3:29644642-29644661 Msa0287300:intron 55.0%
!! TGTCGGTGTCGTGACGGTGT+CGG - chr2_3:29640915-29640934 Msa0287300:three_prime_UTR 60.0%
ACCGGGACACGCCTAATCCA+AGG - chr2_3:29640979-29640998 Msa0287300:three_prime_UTR 60.0%
ACACGACACGTGTCCGACAC+CGG - chr2_3:29641464-29641483 Msa0287300:intron 60.0%
!! GCATGGGTTGGTGAGTCAGG+AGG - chr2_3:29642989-29643008 Msa0287300:intron 60.0%
!! TGGCACCGACTCATGGGAAG+CGG - chr2_3:29644119-29644138 Msa0287300:intron 60.0%
CACGACACGTGTCCGACACC+GGG - chr2_3:29641465-29641484 Msa0287300:intron 65.0%
GGTTAGGCGTGTCCCGGTGT+CGG + chr2_3:29641480-29641499 None:intergenic 65.0%
! TCCTCGGGTTAGGCGTGTCC+CGG + chr2_3:29641486-29641505 None:intergenic 65.0%
GCACGGACACTCCTCGGGTT+AGG + chr2_3:29641496-29641515 None:intergenic 65.0%
GTATGCACTCGCGTGAGCGC+AGG - chr2_3:29642018-29642037 Msa0287300:three_prime_UTR 65.0%
ACCGGGACACGCCTAACCCG+AGG - chr2_3:29641482-29641501 Msa0287300:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 29640510 29644853 29640510 ID=Msa0287300;Name=Msa0287300
chr2_3 mRNA 29640510 29644853 29640510 ID=Msa0287300-mRNA-1;Parent=Msa0287300;Name=Msa0287300-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0.85|0.87|1|0.85|0.75|8|1490|97
chr2_3 exon 29640510 29641067 29640510 ID=Msa0287300-mRNA-1:exon:10381;Parent=Msa0287300-mRNA-1
chr2_3 exon 29641155 29641254 29641155 ID=Msa0287300-mRNA-1:exon:10380;Parent=Msa0287300-mRNA-1
chr2_3 exon 29641919 29642044 29641919 ID=Msa0287300-mRNA-1:exon:10379;Parent=Msa0287300-mRNA-1
chr2_3 exon 29642298 29642487 29642298 ID=Msa0287300-mRNA-1:exon:10378;Parent=Msa0287300-mRNA-1
chr2_3 exon 29642737 29642967 29642737 ID=Msa0287300-mRNA-1:exon:10377;Parent=Msa0287300-mRNA-1
chr2_3 exon 29643083 29643555 29643083 ID=Msa0287300-mRNA-1:exon:10376;Parent=Msa0287300-mRNA-1
chr2_3 exon 29643677 29643713 29643677 ID=Msa0287300-mRNA-1:exon:10375;Parent=Msa0287300-mRNA-1
chr2_3 exon 29644785 29644853 29644785 ID=Msa0287300-mRNA-1:exon:10374;Parent=Msa0287300-mRNA-1
chr2_3 CDS 29644785 29644853 29644785 ID=Msa0287300-mRNA-1:cds;Parent=Msa0287300-mRNA-1
chr2_3 CDS 29643677 29643713 29643677 ID=Msa0287300-mRNA-1:cds;Parent=Msa0287300-mRNA-1
chr2_3 CDS 29643368 29643555 29643368 ID=Msa0287300-mRNA-1:cds;Parent=Msa0287300-mRNA-1
chr2_3 three_prime_UTR 29643083 29643367 29643083 ID=Msa0287300-mRNA-1:three_prime_utr;Parent=Msa0287300-mRNA-1
chr2_3 three_prime_UTR 29642737 29642967 29642737 ID=Msa0287300-mRNA-1:three_prime_utr;Parent=Msa0287300-mRNA-1
chr2_3 three_prime_UTR 29642298 29642487 29642298 ID=Msa0287300-mRNA-1:three_prime_utr;Parent=Msa0287300-mRNA-1
chr2_3 three_prime_UTR 29641919 29642044 29641919 ID=Msa0287300-mRNA-1:three_prime_utr;Parent=Msa0287300-mRNA-1
chr2_3 three_prime_UTR 29641155 29641254 29641155 ID=Msa0287300-mRNA-1:three_prime_utr;Parent=Msa0287300-mRNA-1
chr2_3 three_prime_UTR 29640510 29641067 29640510 ID=Msa0287300-mRNA-1:three_prime_utr;Parent=Msa0287300-mRNA-1
Gene Sequence

>Msa0287300

ATGGGTTCTTGGATTCAGATTATGTCTATATACTATTTGGCATGGTTCAGTTTTCTTGTTGTGAACACAGACCTCAACAACAAGATTTTCTTAAATGCAGTGAAAGCCTTTTCACCATTGAAACTGAGATTAGGTGGCAGTTTGCAAGATGAACTGGTATATGGGACTGATGATTACAACAAACCATGCACTCCTTTTGTTAGAAACACATCTGCAATGTTTGGATTCTCACAAGGGTGCCTTCCAATGCCAAGATGGGATGAACTTAATCATTTCTTCCAAAAATCAGGGTAA
Protein sequence

>Msa0287300

MGSWIQIMSIYYLAWFSFLVVNTDLNNKIFLNAVKAFSPLKLRLGGSLQDELVYGTDDYNKPCTPFVRNTSAMFGFSQGCLPMPRWDELNHFFQKSG*